Package | Description |
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ubic.erminej.analysis | |
ubic.erminej.data |
Modifier and Type | Method and Description |
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static QuantileBin1D |
ScoreQuantiles.computeQuantiles(SettingsHolder settings,
GeneScores geneScores) |
Constructor and Description |
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GeneSetPvalRun(SettingsHolder settings,
GeneScores geneScores)
Do a new analysis, starting from the bare essentials (correlation method not available) (simple API)
|
MultipleTestCorrector(SettingsHolder set,
List<GeneSetTerm> sc,
GeneAnnotations geneData,
GeneScores geneScores,
Map<GeneSetTerm,GeneSetResult> results,
StatusViewer messenger) |
OraPvalGenerator(SettingsHolder settings,
GeneScores geneScores,
GeneAnnotations a,
StatusViewer messenger) |
Modifier and Type | Method and Description |
---|---|
GeneScores |
GeneSetDetails.getSourceGeneScores()
The full set of GeneScores from which this was derived.
|
Modifier and Type | Method and Description |
---|---|
void |
GeneSetDetails.setGeneScores(GeneScores scores)
Switch out the gene scores.
|
Constructor and Description |
---|
GeneScores(GeneScores source,
GeneAnnotations geneAnnots)
Create a copy of source that contains only the probes given.
|
GeneSetDetails(GeneSetTerm classID,
GeneSetResult result,
GeneAnnotations geneData,
Settings settings,
GeneScores geneScores,
StatusViewer statusViewer)
The data matrix will be read in based on the settings, or can be changed later.
|
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