Experiment name	Biological sample category	Biological sample name	MS/MS sample name	Protein group	Protein accession number	Uniprot Terms	Protein name	Protein identification probability	Protein percentage of total spectra	Protein molecular weight (AMU)	Number of unique peptides	Number of unique spectra	Number of total spectra	Spectrum name	Peptide sequence	Peptide Sequence(with modifications)	Previous amino acid	Next amino acid	Peptide identification probability	Mascot Ion score	Mascot Identity score	Mascot Delta Ion score	Modifications identified by spectrum	Actual peptide mass (AMU)	Spectrum charge	Actual minus calculated peptide mass (AMU)	Actual minus calculated peptide mass (PPM)	Peptide start index	Peptide stop index	Replicate 1 HvsL	Replicate 1 MvsL	Replicate 1 MvsH	Replicate 2 HvsL	Replicate 2 MvsL	Replicate 2 MvsH	Replicate 3 HvsL	Replicate 3 MvsL	Replicate 3 MvsH	Replicate 1 Normalized HvsL	Replicate 1 Normalized MvsL	Replicate 1 Normalized MvsH	Replicate 2 Normalized HvsL	Replicate 2 Normalized MvsL	Replicate 2 Normalized MvsH	Replicate 3 Normalized HvsL	Replicate 3 Normalized MvsL	Replicate 3 Normalized MvsH	Average Normalized HvsL	Average Normalized MvsL	ttest p-value HvsL	ttest p-value MvsL	Benjamini-Hochberg corrected p-value HvsL (ttest)	Benjamini-Hochberg corrected p-value MvsL (ttest)	Benjamini-Hochberg corrected p-value HvsL (MWW)	Benjamini-Hochberg corrected p-value MvsL (MWW)
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	sp|Q86U42-2|PABP2_HUMAN	PABP2_HUMAN	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	100.000000	0.023700	31479.000000	2.000000	6.000000	18.000000	Spectrum20884 scans:19087,	AAAAAAAAAAGAAGGR	A[+42]AAAAAAAAAGAAGGR	M	G	99.700000	82.800000	49.000000	17.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1249.640000	2.000000	0.000260	0.210000	2.000000	17.000000	0.353867	0.785633	2.244600	0.674850	0.839800	1.240800	NaN	2.864886	NaN	0.444724	1.139810	3.902973	0.785052	1.140335	1.854847	NaN	1.220128	NaN	0.614888	1.166758	0.171877	0.000523	1.000000	0.362746	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	sp|Q86U42-2|PABP2_HUMAN	PABP2_HUMAN	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	100.000000	0.023700	31479.000000	2.000000	6.000000	18.000000	Spectrum31048 scans:19225,	AAAAAAAAAAGAAGGR	A[+42]AAAAAAAAAGAAGGR	M	G	99.700000	85.100000	48.700000	61.900000	Acetyl (+42)	1239.630000	2.000000	-0.000370	-0.300000	2.000000	17.000000	0.353867	0.785633	2.244600	0.674850	0.839800	1.240800	NaN	2.864886	NaN	0.444724	1.139810	3.902973	0.785052	1.140335	1.854847	NaN	1.220128	NaN	0.614888	1.166758	0.171877	0.000523	1.000000	0.302288	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	sp|Q86U42-2|PABP2_HUMAN	PABP2_HUMAN	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	100.000000	0.023700	31479.000000	2.000000	6.000000	18.000000	Spectrum31061 scans:19277,	AAAAAAAAAAGAAGGR	A[+42]AAAAAAAAAGAAGGR	M	G	99.700000	89.900000	49.300000	47.000000	Acetyl (+42), Label:13C(6) (+6)	1245.650000	2.000000	-0.000120	-0.095000	2.000000	17.000000	0.353867	0.785633	2.244600	0.674850	0.839800	1.240800	NaN	2.864886	NaN	0.444724	1.139810	3.902973	0.785052	1.140335	1.854847	NaN	1.220128	NaN	0.614888	1.166758	0.171877	0.000523	1.000000	0.259104	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	sp|Q86U42-2|PABP2_HUMAN	PABP2_HUMAN	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	100.000000	0.017500	31479.000000	3.000000	5.000000	7.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.21795.21795.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21795"	AAAAAAAAAGAAGGR	A[+42]AAAAAAAAGAAGGR	A	G	99.700000	62.200000	51.900000	20.700000	Acetyl (+42)	1168.600000	2.000000	0.000780	0.670000	3.000000	17.000000	1.539533	2.464000	1.748667	1.654800	0.654750	0.643000	NaN	4.855557	NaN	1.934816	3.574814	3.040631	1.925025	0.889062	0.961208	NaN	2.067936	NaN	1.929921	2.177271	0.001615	0.107308	0.350219	1.000000	1.000000	0.463904	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 3 subunit J OS=Homo sapiens GN=EIF3J PE=1 SV=2	EIF3J_HUMAN	EIF3J_HUMAN	Eukaryotic translation initiation factor 3 subunit J OS=Homo sapiens GN=EIF3J PE=1 SV=2	100.000000	0.012500	29045.300000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37679.37679.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37679"	AAAAAAAGDSDSWDADAFSVEDPVR	A[+42]AAAAAAGDSDSWDADAFSVEDPVR	M	K	99.700000	105.000000	47.400000	105.000000	Acetyl (+42)	2506.080000	2.000000	-0.003600	-1.400000	2.000000	26.000000	NaN	NaN	NaN	0.887400	0.524300	0.591300	NaN	NaN	NaN	NaN	NaN	NaN	1.032311	0.711929	0.883923	NaN	NaN	NaN	1.032311	0.711929	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 3 subunit J OS=Homo sapiens GN=EIF3J PE=1 SV=2	EIF3J_HUMAN	EIF3J_HUMAN	Eukaryotic translation initiation factor 3 subunit J OS=Homo sapiens GN=EIF3J PE=1 SV=2	100.000000	0.012500	29045.300000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37681.37681.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37681"	AAAAAAAGDSDSWDADAFSVEDPVR	A[+42]AAAAAAGDSDSWDADAFSVEDPVR	M	K	99.700000	122.000000	47.900000	121.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	2516.090000	2.000000	-0.002700	-1.100000	2.000000	26.000000	NaN	NaN	NaN	0.887400	0.524300	0.591300	NaN	NaN	NaN	NaN	NaN	NaN	1.032311	0.711929	0.883923	NaN	NaN	NaN	1.032311	0.711929	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 3 subunit J OS=Homo sapiens GN=EIF3J PE=1 SV=2	EIF3J_HUMAN	EIF3J_HUMAN	Eukaryotic translation initiation factor 3 subunit J OS=Homo sapiens GN=EIF3J PE=1 SV=2	100.000000	0.012500	29045.300000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37794.37794.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37794"	AAAAAAAGDSDSWDADAFSVEDPVR	A[+42]AAAAAAGDSDSWDADAFSVEDPVR	M	K	99.700000	124.000000	49.100000	124.000000	Acetyl (+42), Label:13C(6) (+6)	2512.110000	2.000000	-0.001000	-0.400000	2.000000	26.000000	NaN	NaN	NaN	0.887400	0.524300	0.591300	NaN	NaN	NaN	NaN	NaN	NaN	1.032311	0.711929	0.883923	NaN	NaN	NaN	1.032311	0.711929	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Mitogen-activated protein kinase 1 OS=Homo sapiens GN=MAPK1 PE=1 SV=3	MK01_HUMAN	MK01_HUMAN	Mitogen-activated protein kinase 1 OS=Homo sapiens GN=MAPK1 PE=1 SV=3	96.000000	0.008640	41373.900000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.12908.12908.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12908"	AAAAAAGAGPEMVR	A[+42]AAAAAGAGPEMVR	M	G	99.500000	55.100000	50.700000	31.900000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10)	1309.630000	2.000000	-0.000990	-0.760000	2.000000	15.000000	0.645967	1.949000	2.406700	0.569150	3.270150	4.404500	NaN	NaN	NaN	0.811822	2.827643	4.184837	0.662091	4.440424	6.584199	NaN	NaN	NaN	0.736956	3.634033	0.064451	0.139013	1.000000	1.000000	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Mitogen-activated protein kinase 1 OS=Homo sapiens GN=MAPK1 PE=1 SV=3	MK01_HUMAN	MK01_HUMAN	Mitogen-activated protein kinase 1 OS=Homo sapiens GN=MAPK1 PE=1 SV=3	99.800000	0.004720	41373.900000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.36817.36817.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36817"	AAAAAAGAGPEMVR	A[+42]AAAAAGAGPEMVR	M	G	99.400000	57.000000	51.500000	38.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1293.640000	2.000000	-0.001900	-1.500000	2.000000	15.000000	0.645967	1.949000	2.406700	0.569150	3.270150	4.404500	NaN	NaN	NaN	0.811822	2.827643	4.184837	0.662091	4.440424	6.584199	NaN	NaN	NaN	0.736956	3.634033	0.064451	0.139013	1.000000	1.000000	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Mitogen-activated protein kinase 1 OS=Homo sapiens GN=MAPK1 PE=1 SV=3	MK01_HUMAN	MK01_HUMAN	Mitogen-activated protein kinase 1 OS=Homo sapiens GN=MAPK1 PE=1 SV=3	98.900000	0.007510	41373.900000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.12968.12968.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12968"	AAAAAAGAGPEMVR	A[+42]AAAAAGAGPEMVR	M	G	99.700000	60.700000	51.700000	36.300000	Acetyl (+42), Oxidation (+16), Label:13C(6) (+6)	1305.640000	2.000000	-0.000200	-0.160000	2.000000	15.000000	0.645967	1.949000	2.406700	0.569150	3.270150	4.404500	NaN	NaN	NaN	0.811822	2.827643	4.184837	0.662091	4.440424	6.584199	NaN	NaN	NaN	0.736956	3.634033	0.064451	0.139013	1.000000	1.000000	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Mitogen-activated protein kinase 1 OS=Homo sapiens GN=MAPK1 PE=1 SV=3	MK01_HUMAN	MK01_HUMAN	Mitogen-activated protein kinase 1 OS=Homo sapiens GN=MAPK1 PE=1 SV=3	98.900000	0.007510	41373.900000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.12923.12923.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12923"	AAAAAAGAGPEMVR	A[+42]AAAAAGAGPEMVR	M	G	99.700000	76.800000	50.700000	47.100000	Acetyl (+42), Oxidation (+16)	1299.630000	2.000000	0.001300	1.000000	2.000000	15.000000	0.645967	1.949000	2.406700	0.569150	3.270150	4.404500	NaN	NaN	NaN	0.811822	2.827643	4.184837	0.662091	4.440424	6.584199	NaN	NaN	NaN	0.736956	3.634033	0.064451	0.139013	1.000000	1.000000	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Mitogen-activated protein kinase 1 OS=Homo sapiens GN=MAPK1 PE=1 SV=3	MK01_HUMAN	MK01_HUMAN	Mitogen-activated protein kinase 1 OS=Homo sapiens GN=MAPK1 PE=1 SV=3	97.700000	0.009330	41373.900000	1.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.35204.35204.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35204"	AAAAAAGAGPEMVR	A[+42]AAAAAGAGPEMVR	M	G	99.700000	60.400000	51.100000	31.800000	Acetyl (+42)	1283.630000	2.000000	-0.003700	-2.900000	2.000000	15.000000	0.645967	1.949000	2.406700	0.569150	3.270150	4.404500	NaN	NaN	NaN	0.811822	2.827643	4.184837	0.662091	4.440424	6.584199	NaN	NaN	NaN	0.736956	3.634033	0.064451	0.139013	1.000000	1.000000	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Dihydropteridine reductase OS=Homo sapiens GN=QDPR PE=1 SV=2	DHPR_HUMAN	DHPR_HUMAN	Dihydropteridine reductase OS=Homo sapiens GN=QDPR PE=1 SV=2	97.400000	0.005760	25771.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.8318.8318.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8318"	AAAAAAGEAR	A[+42]AAAAAGEAR	M	R	99.700000	80.100000	49.500000	50.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	909.450000	2.000000	0.000550	0.600000	2.000000	11.000000	0.387433	1.159867	3.620667	0.627450	1.893400	12.060250	NaN	NaN	NaN	0.486909	1.682755	6.295717	0.729911	2.570982	18.028627	NaN	NaN	NaN	0.608410	2.126869	0.125484	0.131050	1.000000	1.000000	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Dihydropteridine reductase OS=Homo sapiens GN=QDPR PE=1 SV=2	sp|P09417-2|DHPR_HUMAN	DHPR_HUMAN	Isoform 2 of Dihydropteridine reductase OS=Homo sapiens GN=QDPR	97.400000	0.005760	0.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.8330.8330.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8330"	AAAAAAGEAR	A[+42]AAAAAGEAR	M	R	99.700000	68.800000	49.300000	38.800000	Acetyl (+42)	899.450000	2.000000	0.000300	0.330000	0.000000	0.000000	0.387433	1.159867	3.620667	0.627450	1.893400	12.060250	NaN	NaN	NaN	0.486909	1.682755	6.295717	0.729911	2.570982	18.028627	NaN	NaN	NaN	0.608410	2.126869	0.125484	0.131050	1.000000	1.000000	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dihydropteridine reductase OS=Homo sapiens GN=QDPR PE=1 SV=2	DHPR_HUMAN	DHPR_HUMAN	Dihydropteridine reductase OS=Homo sapiens GN=QDPR PE=1 SV=2	100.000000	0.003950	25771.500000	1.000000	2.000000	3.000000	Spectrum38727 scans:8571,	AAAAAAGEAR	A[+42]AAAAAGEAR	M	R	99.700000	75.800000	47.100000	41.600000	Acetyl (+42), Label:13C(6) (+6)	905.470000	2.000000	0.000600	0.660000	2.000000	11.000000	0.387433	1.159867	3.620667	0.627450	1.893400	12.060250	NaN	NaN	NaN	0.486909	1.682755	6.295717	0.729911	2.570982	18.028627	NaN	NaN	NaN	0.608410	2.126869	0.125484	0.131050	1.000000	1.000000	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of ATPase WRNIP1 OS=Homo sapiens GN=WRNIP1	sp|Q96S55-2|WRIP1_HUMAN	WRIP1_HUMAN	Isoform 2 of ATPase WRNIP1 OS=Homo sapiens GN=WRNIP1	96.400000	0.002880	69442.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.7669.7669.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7669"	AAAAAAGSASPR	NaN	P	S	99.600000	56.200000	50.400000	9.140000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1051.530000	2.000000	-0.002100	-2.000000	144.000000	155.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1 SV=2	DPOE4_HUMAN	DPOE4_HUMAN	DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1 SV=2	95.800000	0.002500	12191.100000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.7303.7303.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7303"	AAAAAAGSGTPR	A[+42]AAAAAGSGTPR	M	E	98.900000	47.700000	50.500000	0.980000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1051.530000	2.000000	-0.001000	-1.000000	2.000000	13.000000	0.889767	0.320333	0.325200	0.391850	0.171500	1.570000	NaN	NaN	NaN	1.118219	0.464745	0.565467	0.455838	0.232874	2.346962	NaN	NaN	NaN	0.787029	0.348810	0.253577	0.204284	1.000000	1.000000	0.992847	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1 SV=2	DPOE4_HUMAN	DPOE4_HUMAN	DNA polymerase epsilon subunit 4 OS=Homo sapiens GN=POLE4 PE=1 SV=2	96.000000	0.002310	12191.100000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.7919.7919.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7919"	AAAAAAGSGTPR	A[+42]AAAAAGSGTPR	M	E	99.700000	80.600000	51.300000	14.400000	Acetyl (+42), Label:13C(6) (+6)	1047.540000	2.000000	0.000670	0.640000	2.000000	13.000000	0.889767	0.320333	0.325200	0.391850	0.171500	1.570000	NaN	NaN	NaN	1.118219	0.464745	0.565467	0.455838	0.232874	2.346962	NaN	NaN	NaN	0.787029	0.348810	0.253577	0.204284	1.000000	1.000000	0.988604	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Sec1 family domain-containing protein 1 OS=Homo sapiens GN=SCFD1 PE=1 SV=4	SCFD1_HUMAN	SCFD1_HUMAN	Sec1 family domain-containing protein 1 OS=Homo sapiens GN=SCFD1 PE=1 SV=4	98.900000	0.007510	72364.300000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33003.33003.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33003"	AAAAAATAAAAASIR	A[+42]AAAAATAAAAASIR	M	E	99.700000	85.500000	54.300000	57.500000	Acetyl (+42), Label:13C(6) (+6)	1304.710000	2.000000	-0.008800	-6.800000	2.000000	16.000000	0.825367	0.765733	0.946600	0.435100	0.952300	2.212850	NaN	NaN	NaN	1.037284	1.110939	1.645975	0.506151	1.293095	3.307945	NaN	NaN	NaN	0.771717	1.202017	0.210995	0.048145	1.000000	1.000000	0.984397	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Sec1 family domain-containing protein 1 OS=Homo sapiens GN=SCFD1 PE=1 SV=4	SCFD1_HUMAN	SCFD1_HUMAN	Sec1 family domain-containing protein 1 OS=Homo sapiens GN=SCFD1 PE=1 SV=4	98.900000	0.007510	72364.300000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.32894.32894.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32894"	AAAAAATAAAAASIR	A[+42]AAAAATAAAAASIR	M	E	99.700000	82.400000	54.300000	59.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1308.710000	2.000000	0.003000	2.300000	2.000000	16.000000	0.825367	0.765733	0.946600	0.435100	0.952300	2.212850	NaN	NaN	NaN	1.037284	1.110939	1.645975	0.506151	1.293095	3.307945	NaN	NaN	NaN	0.771717	1.202017	0.210995	0.048145	1.000000	1.000000	0.959889	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	sp|O00410|IPO5_HUMAN	IPO5_HUMAN	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	100.000000	0.017900	123614.200000	4.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.40282.40282.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40282"	AAAAAEQQQFYLLLGN	A[+42]AAAAEQQQFYLLLGN	M	L	99.700000	64.300000	54.700000	58.600000	Acetyl (+42)	1748.870000	2.000000	-0.000670	-0.380000	2.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	sp|O00410|IPO5_HUMAN	IPO5_HUMAN	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	100.000000	0.017900	123614.200000	4.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.48555.48555.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=48555"	AAAAAEQQQFYLLLGNLLSPDNVVR	A[+42]AAAAEQQQFYLLLGNLLSPDNVVR	M	K	99.400000	88.900000	60.900000	73.500000	Acetyl (+42)	2742.430000	3.000000	-0.001800	-0.670000	2.000000	26.000000	1.127700	0.355600	0.315300	0.474100	0.299450	0.635450	NaN	NaN	NaN	1.417243	0.515911	0.548252	0.551520	0.406613	0.949922	NaN	NaN	NaN	0.984381	0.461262	0.263739	0.075075	1.000000	1.000000	0.948087	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1	sp|Q9Y2Z0-2|SUGT1_HUMAN	SUGT1_HUMAN	Isoform 2 of Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1	100.000000	0.030300	37787.100000	3.000000	6.000000	23.000000	Spectrum38552 scans:8360,	AAAAAGTATSQR	A[+42]AAAAGTATSQR	M	F	99.700000	86.300000	48.100000	47.500000	Acetyl (+42), Label:13C(6) (+6)	1122.570000	2.000000	-0.000220	-0.190000	2.000000	13.000000	0.551800	0.394967	0.732500	0.611450	0.324800	0.531850	0.688714	0.495686	1.042957	0.693477	0.573024	1.273692	0.711299	0.441035	0.795052	0.460632	0.211108	0.499788	0.621803	0.408389	0.016449	0.060976	0.570797	1.000000	0.061854	0.073362	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1	sp|Q9Y2Z0-2|SUGT1_HUMAN	SUGT1_HUMAN	Isoform 2 of Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1	100.000000	0.030300	37787.100000	3.000000	6.000000	23.000000	Spectrum38563 scans:8374,	AAAAAGTATSQR	A[+42]AAAAGTATSQR	M	F	99.700000	90.400000	47.200000	64.400000	Acetyl (+42)	1116.550000	2.000000	0.000130	0.120000	2.000000	13.000000	0.551800	0.394967	0.732500	0.611450	0.324800	0.531850	0.688714	0.495686	1.042957	0.693477	0.573024	1.273692	0.711299	0.441035	0.795052	0.460632	0.211108	0.499788	0.621803	0.408389	0.016449	0.060976	0.565146	1.000000	0.061612	0.073022	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1	sp|Q9Y2Z0-2|SUGT1_HUMAN	SUGT1_HUMAN	Isoform 2 of Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1	100.000000	0.030300	37787.100000	3.000000	6.000000	23.000000	Spectrum38551 scans:8359,	AAAAAGTATSQR	A[+42]AAAAGTATSQR	M	F	99.700000	95.600000	47.300000	55.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1126.560000	2.000000	-0.000580	-0.510000	2.000000	13.000000	0.551800	0.394967	0.732500	0.611450	0.324800	0.531850	0.688714	0.495686	1.042957	0.693477	0.573024	1.273692	0.711299	0.441035	0.795052	0.460632	0.211108	0.499788	0.621803	0.408389	0.016449	0.060976	0.538488	1.000000	0.061372	0.069179	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Golgi to ER traffic protein 4 homolog OS=Homo sapiens GN=GET4 PE=1 SV=1	sp|Q7L5D6|GET4_HUMAN	GET4_HUMAN	Golgi to ER traffic protein 4 homolog OS=Homo sapiens GN=GET4 PE=1 SV=1	98.800000	0.006590	36486.800000	1.000000	3.000000	5.000000	Spectrum43953 scans:14609,	AAAAAMAEQESAR	A[+42]AAAAMAEQESAR	M	N	99.700000	77.500000	44.800000	63.600000	Acetyl (+42), Oxidation (+16), Label:13C(6) (+6)	1339.610000	2.000000	-0.001300	-0.930000	2.000000	14.000000	0.645467	0.643433	1.368467	0.442500	0.348400	0.780500	NaN	NaN	NaN	0.811193	0.933504	2.379528	0.514759	0.473080	1.166754	NaN	NaN	NaN	0.662976	0.703292	0.140022	0.201390	1.000000	1.000000	0.896641	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Golgi to ER traffic protein 4 homolog OS=Homo sapiens GN=GET4 PE=1 SV=1	sp|Q7L5D6|GET4_HUMAN	GET4_HUMAN	Golgi to ER traffic protein 4 homolog OS=Homo sapiens GN=GET4 PE=1 SV=1	98.900000	0.015000	36486.800000	1.000000	2.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.13493.13493.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13493"	AAAAAMAEQESAR	A[+42]AAAAMAEQESAR	M	N	99.700000	89.600000	47.500000	76.700000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10)	1343.610000	2.000000	0.004000	3.000000	2.000000	14.000000	0.645467	0.643433	1.368467	0.442500	0.348400	0.780500	NaN	NaN	NaN	0.811193	0.933504	2.379528	0.514759	0.473080	1.166754	NaN	NaN	NaN	0.662976	0.703292	0.140022	0.201390	1.000000	1.000000	0.893179	0.876263	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Golgi to ER traffic protein 4 homolog OS=Homo sapiens GN=GET4 PE=1 SV=1	sp|Q7L5D6|GET4_HUMAN	GET4_HUMAN	Golgi to ER traffic protein 4 homolog OS=Homo sapiens GN=GET4 PE=1 SV=1	98.900000	0.017900	36486.800000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.17809.17809.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17809"	AAAAAMAEQESAR	A[+42]AAAAMAEQESAR	M	N	98.600000	45.400000	48.100000	29.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1327.610000	2.000000	-0.001100	-0.800000	2.000000	14.000000	0.645467	0.643433	1.368467	0.442500	0.348400	0.780500	NaN	NaN	NaN	0.811193	0.933504	2.379528	0.514759	0.473080	1.166754	NaN	NaN	NaN	0.662976	0.703292	0.140022	0.201390	1.000000	1.000000	0.853629	0.872956	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Golgi to ER traffic protein 4 homolog OS=Homo sapiens GN=GET4 PE=1 SV=1	sp|Q7L5D6|GET4_HUMAN	GET4_HUMAN	Golgi to ER traffic protein 4 homolog OS=Homo sapiens GN=GET4 PE=1 SV=1	98.900000	0.017900	36486.800000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.17819.17819.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17819"	AAAAAMAEQESAR	A[+42]AAAAMAEQESAR	M	N	99.700000	58.900000	47.800000	48.200000	Acetyl (+42)	1317.600000	2.000000	-0.000930	-0.700000	2.000000	14.000000	0.645467	0.643433	1.368467	0.442500	0.348400	0.780500	NaN	NaN	NaN	0.811193	0.933504	2.379528	0.514759	0.473080	1.166754	NaN	NaN	NaN	0.662976	0.703292	0.140022	0.201390	1.000000	1.000000	0.803241	0.763476	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Golgi to ER traffic protein 4 homolog OS=Homo sapiens GN=GET4 PE=1 SV=1	sp|Q7L5D6|GET4_HUMAN	GET4_HUMAN	Golgi to ER traffic protein 4 homolog OS=Homo sapiens GN=GET4 PE=1 SV=1	98.900000	0.017900	36486.800000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.12303.12303.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12303"	AAAAAMAEQESAR	A[+42]AAAAMAEQESAR	M	N	99.700000	91.700000	46.700000	80.400000	Acetyl (+42), Oxidation (+16)	1333.590000	2.000000	-0.001400	-1.100000	2.000000	14.000000	0.645467	0.643433	1.368467	0.442500	0.348400	0.780500	NaN	NaN	NaN	0.811193	0.933504	2.379528	0.514759	0.473080	1.166754	NaN	NaN	NaN	0.662976	0.703292	0.140022	0.201390	1.000000	1.000000	0.766004	0.760965	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 3 of Mitogen-activated protein kinase 3 OS=Homo sapiens GN=MAPK3	sp|P27361-3|MK03_HUMAN	MK03_HUMAN	Isoform 3 of Mitogen-activated protein kinase 3 OS=Homo sapiens GN=MAPK3	97.700000	0.002330	40071.400000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.15487.15487.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15487"	AAAAAQGGGGGEPR	A[+42]AAAAQGGGGGEPR	M	R	99.700000	68.400000	48.900000	54.900000	Acetyl (+42)	1210.570000	2.000000	-0.001300	-1.100000	2.000000	15.000000	0.504067	0.181800	0.350700	1.129200	0.338550	0.302850	0.641329	2.546471	8.734914	0.633488	0.263759	0.609807	1.313596	0.459705	0.452724	0.428939	1.084518	4.185794	0.792008	0.602661	0.097586	0.135247	1.000000	1.000000	0.049914	0.050232	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens GN=TRIM32 PE=1 SV=2	TRI32_HUMAN	TRI32_HUMAN	E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens GN=TRIM32 PE=1 SV=2	99.500000	0.008960	71970.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.24852.24852.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24852"	AAAAASHLNLDALR	A[+42]AAAASHLNLDALR	M	E	99.700000	71.400000	54.700000	60.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1444.760000	2.000000	-0.005400	-3.800000	2.000000	15.000000	0.345300	0.422500	1.698467	0.574100	0.174350	0.304000	NaN	NaN	NaN	0.433958	0.612970	2.953341	0.667849	0.236744	0.454444	NaN	NaN	NaN	0.550903	0.424857	0.133165	0.265358	1.000000	1.000000	0.709611	0.734392	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens GN=TRIM32 PE=1 SV=2	TRI32_HUMAN	TRI32_HUMAN	E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens GN=TRIM32 PE=1 SV=2	99.500000	0.008960	71970.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.24846.24846.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24846"	AAAAASHLNLDALR	A[+42]AAAASHLNLDALR	M	E	99.700000	85.200000	54.800000	69.800000	Acetyl (+42)	1434.760000	2.000000	0.003500	2.400000	2.000000	15.000000	0.345300	0.422500	1.698467	0.574100	0.174350	0.304000	NaN	NaN	NaN	0.433958	0.612970	2.953341	0.667849	0.236744	0.454444	NaN	NaN	NaN	0.550903	0.424857	0.133165	0.265358	1.000000	1.000000	0.694695	0.725183	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2	DNJC7_HUMAN	DNJC7_HUMAN	DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2	98.200000	0.004480	56424.900000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.30489.30489.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30489"	AAAAECDVVMAATEPELLDDQEAKR	A[+42]AAAEC[+57]DVVM[+16]AATEPELLDDQEAKR	M	E	98.800000	75.400000	53.900000	75.400000	Acetyl (+42), Carbamidomethyl (+57), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2806.300000	3.000000	-0.014000	-5.000000	2.000000	26.000000	NaN	NaN	1.207700	75.036600	28.667100	0.395800	NaN	NaN	NaN	NaN	NaN	2.099983	87.289923	38.926064	0.591674	NaN	NaN	NaN	87.289923	38.926064	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens GN=BLOC1S2 PE=1 SV=1	sp|Q6QNY1|BL1S2_HUMAN	BL1S2_HUMAN	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens GN=BLOC1S2 PE=1 SV=1	97.400000	0.005760	15944.100000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.23847.23847.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23847"	AAAAEGVLATR	A[+42]AAAEGVLATR	M	S	99.700000	71.200000	52.300000	44.000000	Acetyl (+42)	1070.570000	2.000000	0.000750	0.700000	2.000000	12.000000	0.934533	1.277433	1.195400	0.587600	0.365650	0.622850	1.292957	0.820871	0.832186	1.174479	1.853322	2.078595	0.683554	0.496503	0.931086	0.864768	0.349601	0.398786	0.907600	0.899809	0.024043	0.200871	0.514987	1.000000	0.046119	0.047508	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens GN=BLOC1S2 PE=1 SV=1	sp|Q6QNY1|BL1S2_HUMAN	BL1S2_HUMAN	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens GN=BLOC1S2 PE=1 SV=1	98.600000	0.005270	15944.100000	1.000000	2.000000	4.000000	Spectrum30950 scans:18690,	AAAAEGVLATR	A[+42]AAAEGVLATR	M	S	99.400000	58.800000	49.100000	24.500000	Acetyl (+42), Label:13C(6) (+6)	1076.590000	2.000000	0.000220	0.210000	2.000000	12.000000	0.934533	1.277433	1.195400	0.587600	0.365650	0.622850	1.292957	0.820871	0.832186	1.174479	1.853322	2.078595	0.683554	0.496503	0.931086	0.864768	0.349601	0.398786	0.907600	0.899809	0.024043	0.200871	0.511827	1.000000	0.045985	0.045324	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens GN=BLOC1S2 PE=1 SV=1	sp|Q6QNY1|BL1S2_HUMAN	BL1S2_HUMAN	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens GN=BLOC1S2 PE=1 SV=1	98.900000	0.004480	15944.100000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.21028.21028.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21028"	AAAAEGVLATR	A[+42]AAAEGVLATR	M	S	99.700000	70.800000	52.300000	49.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1080.580000	2.000000	-0.000260	-0.240000	2.000000	12.000000	0.934533	1.277433	1.195400	0.587600	0.365650	0.622850	1.292957	0.820871	0.832186	1.174479	1.853322	2.078595	0.683554	0.496503	0.931086	0.864768	0.349601	0.398786	0.907600	0.899809	0.024043	0.200871	0.508706	1.000000	0.045851	0.045194	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation elongation factor 1 epsilon-1 OS=Homo sapiens GN=EEF1E1 PE=1 SV=1	MCA3_HUMAN	MCA3_HUMAN	Eukaryotic translation elongation factor 1 epsilon-1 OS=Homo sapiens GN=EEF1E1 PE=1 SV=1	100.000000	0.001320	19793.100000	1.000000	1.000000	1.000000	Spectrum13265 scans:49027,	AAAAELSLLEK	A[+42]AAAELSLLEK	M	S	99.700000	74.600000	49.700000	50.500000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1192.680000	2.000000	-0.001100	-0.910000	2.000000	12.000000	10.885200	3.706100	5.372700	94.800850	53.722850	0.562850	NaN	NaN	NaN	13.680030	5.376874	9.342201	110.281634	72.948401	0.841393	NaN	NaN	NaN	61.980832	39.162638	0.000000	0.185929	0.000000	1.000000	0.670531	0.660952	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Eukaryotic translation elongation factor 1 epsilon-1 OS=Homo sapiens GN=EEF1E1 PE=1 SV=1	MCA3_HUMAN	MCA3_HUMAN	Eukaryotic translation elongation factor 1 epsilon-1 OS=Homo sapiens GN=EEF1E1 PE=1 SV=1	100.000000	0.008640	19793.100000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.55363.55363.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=55363"	AAAAELSLLEKSLGL	A[+42]AAAELSLLEKSLGL	M	S	99.700000	64.700000	56.200000	45.800000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1562.900000	2.000000	-0.001100	-0.710000	2.000000	16.000000	313.036200	103.903400	9.206300	135.958450	72.102450	0.489650	NaN	NaN	NaN	393.409828	150.744850	16.008172	158.160186	97.905425	0.731968	NaN	NaN	NaN	275.785007	124.325137	0.000000	0.000000	0.000000	0.000000	0.668593	0.659069	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Eukaryotic translation elongation factor 1 epsilon-1 OS=Homo sapiens GN=EEF1E1 PE=1 SV=1	MCA3_HUMAN	MCA3_HUMAN	Eukaryotic translation elongation factor 1 epsilon-1 OS=Homo sapiens GN=EEF1E1 PE=1 SV=1	98.800000	0.002330	19793.100000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.64163.64163.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64163"	AAAAELSLLEKSLGL	A[+42]AAAELSLLEKSLGL	M	S	99.600000	64.200000	56.300000	50.700000	Acetyl (+42), Dimethyl (+28)	1554.880000	2.000000	-0.002600	-1.700000	2.000000	16.000000	313.036200	103.903400	9.206300	135.958450	72.102450	0.489650	NaN	NaN	NaN	393.409828	150.744850	16.008172	158.160186	97.905425	0.731968	NaN	NaN	NaN	275.785007	124.325137	0.000000	0.000000	0.000000	0.000000	0.666667	0.653484	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Eukaryotic translation elongation factor 1 epsilon-1 OS=Homo sapiens GN=EEF1E1 PE=1 SV=1	MCA3_HUMAN	MCA3_HUMAN	Eukaryotic translation elongation factor 1 epsilon-1 OS=Homo sapiens GN=EEF1E1 PE=1 SV=1	100.000000	0.022400	19793.100000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis.41796.41796.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41796"	AAAAELSLLEKSLGLSKGN	A[+42]AAAELSLLEKSLGLSKGN	M	K	99.700000	81.300000	58.400000	71.800000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	1969.110000	2.000000	-0.000680	-0.340000	2.000000	20.000000	5.606033	3.737700	0.241267	101.641850	46.957850	0.423850	NaN	NaN	NaN	7.045411	5.422720	0.419521	118.239756	63.762441	0.633605	NaN	NaN	NaN	62.642583	34.592581	0.109264	0.183670	1.000000	1.000000	0.616889	0.615248	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Eukaryotic translation elongation factor 1 epsilon-1 OS=Homo sapiens GN=EEF1E1 PE=1 SV=1	MCA3_HUMAN	MCA3_HUMAN	Eukaryotic translation elongation factor 1 epsilon-1 OS=Homo sapiens GN=EEF1E1 PE=1 SV=1	100.000000	0.022400	19793.100000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis.41797.41797.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41797"	AAAAELSLLEKSLGLSKGN	A[+42]AAAELSLLEKSLGLSKGN	M	K	99.700000	89.900000	58.400000	81.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1985.130000	2.000000	-0.003100	-1.600000	2.000000	20.000000	5.606033	3.737700	0.241267	101.641850	46.957850	0.423850	NaN	NaN	NaN	7.045411	5.422720	0.419521	118.239756	63.762441	0.633605	NaN	NaN	NaN	62.642583	34.592581	0.109264	0.183670	1.000000	1.000000	0.535494	0.613616	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Ankyrin repeat domain 54 OS=Homo sapiens GN=ANKRD54 PE=4 SV=1	D3YTC9_HUMAN	D3YTC9_HUMAN	Ankyrin repeat domain 54 OS=Homo sapiens GN=ANKRD54 PE=4 SV=1	99.400000	0.010800	30732.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.6733.6733.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6733"	AAAAGDADDEPR	A[+42]AAAGDADDEPR	M	S	99.700000	63.500000	42.800000	55.500000	Acetyl (+42)	1199.510000	2.000000	-0.000190	-0.160000	2.000000	13.000000	1.849800	3.399800	0.594367	NaN	NaN	1.265950	NaN	NaN	NaN	2.324746	4.932489	1.033501	NaN	NaN	1.892443	NaN	NaN	NaN	2.324746	4.932489	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Poly(ADP-ribose) glycohydrolase ARH3 OS=Homo sapiens GN=ADPRHL2 PE=1 SV=1	ARHL2_HUMAN	ARHL2_HUMAN	Poly(ADP-ribose) glycohydrolase ARH3 OS=Homo sapiens GN=ADPRHL2 PE=1 SV=1	100.000000	0.002360	38929.300000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.11277.11277.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11277"	AAAAGGGAGAAR	A[+42]AAAGGGAGAAR	M	S	98.900000	55.000000	49.600000	27.100000	Acetyl (+42)	941.470000	2.000000	0.001400	1.500000	7.000000	18.000000	0.794667	0.327000	0.428933	1.455950	NaN	NaN	NaN	NaN	1.643629	0.998701	0.474417	0.745841	1.693704	NaN	NaN	NaN	NaN	0.787631	1.346203	0.474417	0.160823	NaN	1.000000	NaN	0.511799	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Nucleoporin NUP188 homolog OS=Homo sapiens GN=NUP188	sp|Q5SRE5-2|NU188_HUMAN	NU188_HUMAN	Isoform 2 of Nucleoporin NUP188 homolog OS=Homo sapiens GN=NUP188	97.400000	0.004480	182279.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.7732.7732.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7732"	AAAAGGPCVR	A[+42]AAAGGPC[+57]VR	M	S	99.400000	52.500000	48.400000	24.700000	Acetyl (+42), Carbamidomethyl (+57)	970.470000	2.000000	-0.000054	-0.056000	2.000000	11.000000	1.014500	0.954867	0.902700	0.535450	0.239100	0.451200	NaN	1.352057	NaN	1.274978	1.385337	1.569640	0.622888	0.324666	0.674490	NaN	0.575828	NaN	0.948933	0.761944	0.210692	0.140230	1.000000	1.000000	0.505095	0.038470	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1	sp|Q9Y2Z0-2|SUGT1_HUMAN	SUGT1_HUMAN	Isoform 2 of Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1	100.000000	0.030300	37787.100000	3.000000	6.000000	23.000000	Spectrum36480 scans:5947,	AAAAGTATSQR	A[+42]AAAGTATSQR	A	F	99.700000	62.300000	46.800000	41.300000	Acetyl (+42)	1045.520000	2.000000	-0.000130	-0.120000	3.000000	13.000000	1.069300	1.745967	2.451233	NaN	2.497650	NaN	NaN	NaN	NaN	1.343848	2.533079	4.262273	NaN	3.391473	NaN	NaN	NaN	NaN	1.343848	2.962276	NaN	0.091601	NaN	1.000000	1.000000	0.526955	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1	sp|Q9Y2Z0-2|SUGT1_HUMAN	SUGT1_HUMAN	Isoform 2 of Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1	100.000000	0.030300	37787.100000	3.000000	6.000000	23.000000	Spectrum36484 scans:5952,	AAAAGTATSQR	A[+42]AAAGTATSQR	A	F	99.700000	90.700000	46.800000	58.600000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1055.520000	2.000000	0.000520	0.490000	3.000000	13.000000	1.069300	1.745967	2.451233	NaN	2.497650	NaN	NaN	NaN	NaN	1.343848	2.533079	4.262273	NaN	3.391473	NaN	NaN	NaN	NaN	1.343848	2.962276	NaN	0.091601	NaN	1.000000	1.000000	0.525758	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	DHSO_HUMAN	DHSO_HUMAN	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	100.000000	0.018400	38306.600000	4.000000	9.000000	14.000000	Spectrum49753 scans:21270,	AAAAKPNNLSLVVH	A[+42]AAAKPNNLSLVVH	M	G	99.700000	84.400000	51.100000	64.400000	Acetyl (+42), Dimethyl:2H(4) (+32)	1477.850000	2.000000	-0.000980	-0.660000	2.000000	15.000000	53.734667	26.489200	0.484967	NaN	NaN	NaN	NaN	NaN	NaN	67.531314	38.430989	0.843274	NaN	NaN	NaN	NaN	NaN	NaN	67.531314	38.430989	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	DHSO_HUMAN	DHSO_HUMAN	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	100.000000	0.018400	38306.600000	4.000000	9.000000	14.000000	Spectrum49831 scans:21362,	AAAAKPNNLSLVVH	A[+42]AAAKPNNLSLVVH	M	G	99.700000	95.600000	51.400000	75.500000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1481.840000	2.000000	-0.001800	-1.200000	2.000000	15.000000	53.734667	26.489200	0.484967	NaN	NaN	NaN	NaN	NaN	NaN	67.531314	38.430989	0.843274	NaN	NaN	NaN	NaN	NaN	NaN	67.531314	38.430989	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	DHSO_HUMAN	DHSO_HUMAN	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	100.000000	0.016200	38306.600000	3.000000	5.000000	7.000000	Nsco_Tails_biological_replicate_3_fraction6A.21363.21363.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21363"	AAAAKPNNLSLVVH	A[+42]AAAKPNNLSLVVH	M	G	99.700000	84.100000	55.800000	58.700000	Acetyl (+42), Dimethyl (+28)	1473.830000	2.000000	-0.001600	-1.100000	2.000000	15.000000	53.734667	26.489200	0.484967	NaN	NaN	NaN	NaN	NaN	NaN	67.531314	38.430989	0.843274	NaN	NaN	NaN	NaN	NaN	NaN	67.531314	38.430989	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	DHSO_HUMAN	DHSO_HUMAN	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	100.000000	0.011500	38306.600000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.22626.22626.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22626"	AAAAKPNNLSLVVHGPGDLR	A[+42]AAAKPNNLSLVVHGPGDLR	M	L	98.800000	72.500000	58.900000	69.000000	Acetyl (+42), Dimethyl (+28)	2069.140000	3.000000	-0.001800	-0.890000	2.000000	21.000000	153.725967	83.328567	0.533067	NaN	0.844700	NaN	NaN	NaN	NaN	193.195886	120.894526	0.926911	NaN	1.146989	NaN	NaN	NaN	NaN	193.195886	61.020757	NaN	0.427298	NaN	1.000000	1.000000	0.444018	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	DHSO_HUMAN	DHSO_HUMAN	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	100.000000	0.018400	38306.600000	4.000000	9.000000	14.000000	Spectrum52876 scans:24864,	AAAAKPNNLSLVVHGPGDLR	A[+42]AAAKPNNLSLVVHGPGDLR	M	L	99.700000	60.600000	54.100000	51.100000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2087.160000	3.000000	-0.003100	-1.500000	2.000000	21.000000	153.725967	83.328567	0.533067	NaN	0.844700	NaN	NaN	NaN	NaN	193.195886	120.894526	0.926911	NaN	1.146989	NaN	NaN	NaN	NaN	193.195886	61.020757	NaN	0.427298	NaN	1.000000	1.000000	0.438131	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	DHSO_HUMAN	DHSO_HUMAN	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	100.000000	0.018400	38306.600000	4.000000	9.000000	14.000000	Spectrum52662 scans:24628,	AAAAKPNNLSLVVHGPGDLR	A[+42]AAAKPNNLSLVVHGPGDLR	M	L	99.700000	82.200000	53.700000	73.300000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2079.180000	3.000000	-0.001800	-0.860000	2.000000	21.000000	153.725967	83.328567	0.533067	NaN	0.844700	NaN	NaN	NaN	NaN	193.195886	120.894526	0.926911	NaN	1.146989	NaN	NaN	NaN	NaN	193.195886	61.020757	NaN	0.427298	NaN	1.000000	1.000000	0.426028	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Rab GTPase-binding effector protein 2 OS=Homo sapiens GN=RABEP2 PE=2 SV=1	B4DHR0_HUMAN	B4DHR0_HUMAN	Rab GTPase-binding effector protein 2 OS=Homo sapiens GN=RABEP2 PE=2 SV=1	99.800000	0.005010	56094.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.10198.10198.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10198"	AAAAPVAADDDER	A[+42]AAAPVAADDDER	M	R	99.700000	59.400000	46.700000	52.800000	Acetyl (+42)	1312.590000	2.000000	-0.004200	-3.200000	2.000000	14.000000	0.137300	1.075033	NaN	0.529700	0.303650	0.586900	NaN	NaN	NaN	0.172552	1.559677	NaN	0.616199	0.412316	0.877345	NaN	NaN	NaN	0.394376	0.985996	0.326181	0.335467	1.000000	1.000000	0.458086	0.398164	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Rab GTPase-binding effector protein 2 OS=Homo sapiens GN=RABEP2 PE=2 SV=1	sp|Q9H5N1|RABE2_HUMAN	RABE2_HUMAN	Rab GTPase-binding effector protein 2 OS=Homo sapiens GN=RABEP2 PE=1 SV=2	99.800000	0.005010	63524.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.10216.10216.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10216"	AAAAPVAADDDER	A[+42]AAAPVAADDDER	M	R	99.300000	48.500000	47.400000	41.600000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1322.600000	2.000000	-0.002300	-1.700000	2.000000	14.000000	0.137300	1.075033	NaN	0.529700	0.303650	0.586900	NaN	NaN	NaN	0.172552	1.559677	NaN	0.616199	0.412316	0.877345	NaN	NaN	NaN	0.394376	0.985996	0.326181	0.335467	1.000000	1.000000	0.455381	0.397480	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	LRC47_HUMAN	LRC47_HUMAN	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	100.000000	0.029000	63456.700000	4.000000	13.000000	22.000000	Spectrum69009 scans:43828,	AAAAVSESWPELELAER	A[+42]AAAVSESWPELELAER	M	E	99.700000	101.000000	50.800000	83.200000	Acetyl (+42), Label:13C(6) (+6)	1875.930000	2.000000	-0.002800	-1.500000	2.000000	18.000000	1.014500	0.366167	0.397000	1.125900	0.395800	0.362100	NaN	NaN	NaN	1.274978	0.531241	0.690315	1.309757	0.537443	0.541296	NaN	NaN	NaN	1.292368	0.534342	0.008566	0.003695	0.123330	0.044515	0.454486	0.396798	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	LRC47_HUMAN	LRC47_HUMAN	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	100.000000	0.027500	63456.700000	3.000000	5.000000	11.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.41451.41451.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41451"	AAAAVSESWPELELAER	A[+42]AAAVSESWPELELAER	M	E	99.700000	104.000000	54.300000	80.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1879.920000	2.000000	-0.001100	-0.560000	2.000000	18.000000	1.014500	0.366167	0.397000	1.125900	0.395800	0.362100	NaN	NaN	NaN	1.274978	0.531241	0.690315	1.309757	0.537443	0.541296	NaN	NaN	NaN	1.292368	0.534342	0.008566	0.003695	0.122315	0.042452	0.440635	0.396119	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	LRC47_HUMAN	LRC47_HUMAN	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	100.000000	0.032400	63456.700000	3.000000	8.000000	14.000000	Nsco_Tails_biological_replicate_3_fraction6A.43915.43915.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43915"	AAAAVSESWPELELAER	A[+42]AAAVSESWPELELAER	M	E	99.700000	100.000000	54.000000	91.800000	Acetyl (+42)	1869.910000	2.000000	-0.000950	-0.510000	2.000000	18.000000	1.014500	0.366167	0.397000	1.125900	0.395800	0.362100	NaN	NaN	NaN	1.274978	0.531241	0.690315	1.309757	0.537443	0.541296	NaN	NaN	NaN	1.292368	0.534342	0.008566	0.003695	0.121814	0.042312	0.439797	0.395442	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of E3 ubiquitin-protein ligase ZFP91 OS=Homo sapiens GN=ZFP91	sp|Q96JP5-2|ZFP91_HUMAN	ZFP91_HUMAN	Isoform 2 of E3 ubiquitin-protein ligase ZFP91 OS=Homo sapiens GN=ZFP91	97.400000	0.002880	59553.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.7175.7175.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7175"	AAAAVSRRR	NaN	A	K	99.700000	65.500000	52.100000	0.000000	Acetyl (+42), Label:13C(6) (+6), Label:13C(6) (+6)	1010.610000	2.000000	-0.002300	-2.300000	64.000000	72.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	5-formyltetrahydrofolate cyclo-ligase OS=Homo sapiens GN=MTHFS PE=1 SV=2	MTHFS_HUMAN	MTHFS_HUMAN	5-formyltetrahydrofolate cyclo-ligase OS=Homo sapiens GN=MTHFS PE=1 SV=2	98.300000	0.002500	23238.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.6784.6784.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6784"	AAAAVSSAKR	A[+42]AAAVSSAKR	M	S	99.600000	55.300000	52.500000	27.100000	Acetyl (+42), Dimethyl (+28)	1000.570000	2.000000	-0.000990	-0.990000	2.000000	11.000000	22.573667	12.437900	0.544700	6.529400	2.311450	0.349550	5.716986	NaN	0.841600	28.369570	18.045120	0.947140	7.595638	3.138638	0.522535	3.823687	NaN	0.403297	13.262965	10.591879	0.057927	0.306387	0.785184	1.000000	0.029648	0.388796	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3	sp|O00231-2|PSD11_HUMAN	PSD11_HUMAN	Isoform 2 of 26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11	100.000000	0.002880	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.25889.25889.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25889"	AAAAVVEFQR	A[+42]AAAVVEFQR	M	A	99.700000	64.200000	52.700000	37.800000	Acetyl (+42), Label:13C(6) (+6)	1108.600000	2.000000	0.001000	0.930000	0.000000	0.000000	0.689667	0.213467	0.310533	0.626600	0.310850	0.496200	1.770486	3.965400	1.087043	0.866742	0.309701	0.539964	0.728922	0.422092	0.741759	1.184153	1.688826	0.520914	0.926606	0.806873	0.020508	0.209582	0.276905	1.000000	0.028994	0.026464	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3	PSD11_HUMAN	PSD11_HUMAN	26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3	100.000000	0.017100	47448.300000	3.000000	5.000000	13.000000	Spectrum23203 scans:16592,	AAAAVVEFQR	A[+42]AAAVVEFQR	M	A	99.700000	68.500000	48.400000	30.600000	Acetyl (+42)	1102.580000	2.000000	0.000690	0.630000	2.000000	11.000000	0.689667	0.213467	0.310533	0.626600	0.310850	0.496200	1.770486	3.965400	1.087043	0.866742	0.309701	0.539964	0.728922	0.422092	0.741759	1.184153	1.688826	0.520914	0.926606	0.806873	0.020508	0.209582	0.275831	1.000000	0.028782	0.026420	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3	PSD11_HUMAN	PSD11_HUMAN	26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3	100.000000	0.017100	47448.300000	3.000000	5.000000	13.000000	Spectrum20981 scans:20003,	AAAAVVEFQR	A[+42]AAAVVEFQR	M	A	99.700000	76.400000	48.600000	44.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1112.590000	2.000000	0.000480	0.430000	2.000000	11.000000	0.689667	0.213467	0.310533	0.626600	0.310850	0.496200	1.770486	3.965400	1.087043	0.866742	0.309701	0.539964	0.728922	0.422092	0.741759	1.184153	1.688826	0.520914	0.926606	0.806873	0.020508	0.209582	0.274766	1.000000	0.028574	0.025772	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens GN=DDX31	sp|Q9H8H2-2|DDX31_HUMAN	DDX31_HUMAN	Isoform 2 of Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens GN=DDX31	99.800000	0.001320	85799.100000	1.000000	1.000000	1.000000	Spectrum10257 scans:36848,	AAADGSLFDNPR	A[+42]AADGSLFDNPR	M	T	99.700000	74.300000	44.800000	58.400000	Acetyl (+42)	1274.590000	2.000000	-0.003400	-2.700000	107.000000	118.000000	0.581567	1.200933	1.445433	1.825700	0.172150	0.225600	NaN	NaN	NaN	0.730887	1.742335	2.513360	2.123833	0.233757	0.337245	NaN	NaN	NaN	1.427360	0.988046	0.288998	0.415096	1.000000	1.000000	0.416817	0.362591	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	PGP_HUMAN	PGP_HUMAN	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	100.000000	0.018400	33988.600000	5.000000	9.000000	14.000000	Spectrum25142 scans:4413,	AAAEAGGDDAR	A[+42]AAEAGGDDAR	M	C	99.700000	91.400000	42.400000	61.900000	Acetyl (+42), Label:13C(6) (+6)	1050.470000	2.000000	0.000400	0.380000	2.000000	12.000000	0.563700	0.284133	0.504067	0.683150	0.689050	1.016550	4.215686	1.634771	1.577357	0.708433	0.412226	0.876485	0.794707	0.935637	1.519620	2.819574	0.696234	0.755874	1.440905	0.681365	0.171923	0.045925	1.000000	0.481449	0.028166	0.024683	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	PGP_HUMAN	PGP_HUMAN	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	100.000000	0.018400	33988.600000	5.000000	9.000000	14.000000	Spectrum35736 scans:5106,	AAAEAGGDDAR	A[+42]AAEAGGDDAR	M	C	99.700000	106.000000	40.600000	68.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1054.460000	2.000000	-0.000560	-0.530000	2.000000	12.000000	0.563700	0.284133	0.504067	0.683150	0.689050	1.016550	4.215686	1.634771	1.577357	0.708433	0.412226	0.876485	0.794707	0.935637	1.519620	2.819574	0.696234	0.755874	1.440905	0.681365	0.171923	0.045925	1.000000	0.479999	0.027769	0.024530	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	PGP_HUMAN	PGP_HUMAN	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	98.900000	0.005010	33988.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.4711.4711.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4711"	AAAEAGGDDAR	A[+42]AAEAGGDDAR	M	C	99.700000	87.000000	43.400000	67.500000	Acetyl (+42)	1044.450000	2.000000	-0.000700	-0.670000	2.000000	12.000000	0.563700	0.284133	0.504067	0.683150	0.689050	1.016550	4.215686	1.634771	1.577357	0.708433	0.412226	0.876485	0.794707	0.935637	1.519620	2.819574	0.696234	0.755874	1.440905	0.681365	0.171923	0.045925	1.000000	0.478558	0.027720	0.024492	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peroxisomal biogenesis factor 19 OS=Homo sapiens GN=PEX19 PE=4 SV=1	E9PPB4_HUMAN	E9PPB4_HUMAN	Peroxisomal biogenesis factor 19 OS=Homo sapiens GN=PEX19 PE=4 SV=1	98.800000	0.007900	4459.000000	1.000000	2.000000	6.000000	Spectrum28201 scans:10131,	AAAEEGCSVGAEADR	A[+42]AAEEGC[+57]SVGAEADR	M	E	99.700000	97.300000	39.100000	69.800000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1543.640000	2.000000	-0.003000	-2.000000	2.000000	16.000000	0.810267	0.720333	0.376700	0.410200	0.055550	0.130600	NaN	NaN	NaN	1.018307	1.045072	0.655017	0.477185	0.075429	0.195231	NaN	NaN	NaN	0.747746	0.560251	0.221021	0.454131	1.000000	1.000000	0.399539	0.358656	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peroxisomal biogenesis factor 19 OS=Homo sapiens GN=PEX19 PE=4 SV=1	E9PPB4_HUMAN	E9PPB4_HUMAN	Peroxisomal biogenesis factor 19 OS=Homo sapiens GN=PEX19 PE=4 SV=1	98.800000	0.007900	4459.000000	1.000000	2.000000	6.000000	Spectrum28240 scans:10224,	AAAEEGCSVGAEADR	A[+42]AAEEGC[+57]SVGAEADR	M	E	99.700000	104.000000	38.800000	83.200000	Acetyl (+42), Carbamidomethyl (+57)	1533.640000	2.000000	-0.000510	-0.330000	2.000000	16.000000	0.810267	0.720333	0.376700	0.410200	0.055550	0.130600	NaN	NaN	NaN	1.018307	1.045072	0.655017	0.477185	0.075429	0.195231	NaN	NaN	NaN	0.747746	0.560251	0.221021	0.454131	1.000000	1.000000	0.394094	0.354806	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Pyrroline-5-carboxylate reductase 3 OS=Homo sapiens GN=PYCRL PE=1 SV=2	P5CR3_HUMAN	P5CR3_HUMAN	Pyrroline-5-carboxylate reductase 3 OS=Homo sapiens GN=PYCRL PE=1 SV=2	95.700000	0.003950	28630.400000	1.000000	2.000000	3.000000	Spectrum15394 scans:4581,	AAAEPSPR	A[+42]AAEPSPR	M	R	99.000000	53.200000	47.100000	28.300000	Acetyl (+42), Label:13C(6) (+6)	845.430000	2.000000	-0.001300	-1.600000	2.000000	9.000000	0.726900	3.912633	5.334233	0.761900	0.422750	0.554300	NaN	NaN	NaN	0.913535	5.676516	9.275314	0.886317	0.574038	0.828612	NaN	NaN	NaN	0.899926	3.125277	0.009627	0.435840	0.110246	1.000000	0.383637	0.354262	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Pyrroline-5-carboxylate reductase 3 OS=Homo sapiens GN=PYCRL PE=1 SV=2	P5CR3_HUMAN	P5CR3_HUMAN	Pyrroline-5-carboxylate reductase 3 OS=Homo sapiens GN=PYCRL PE=1 SV=2	95.700000	0.003950	28630.400000	1.000000	2.000000	3.000000	Spectrum21553 scans:3874,	AAAEPSPR	A[+42]AAEPSPR	M	R	99.000000	64.100000	45.000000	28.700000	Acetyl (+42)	839.410000	2.000000	0.000051	0.061000	2.000000	9.000000	0.726900	3.912633	5.334233	0.761900	0.422750	0.554300	NaN	NaN	NaN	0.913535	5.676516	9.275314	0.886317	0.574038	0.828612	NaN	NaN	NaN	0.899926	3.125277	0.009627	0.435840	0.109883	1.000000	0.383002	0.353721	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine/threonine-protein kinase PRP4 homolog OS=Homo sapiens GN=PRPF4B PE=1 SV=3	PRP4B_HUMAN	PRP4B_HUMAN	Serine/threonine-protein kinase PRP4 homolog OS=Homo sapiens GN=PRPF4B PE=1 SV=3	99.100000	0.007900	116975.000000	1.000000	3.000000	6.000000	Spectrum27857 scans:9397,	AAAETQSLR	A[+42]AAETQSLR	M	E	99.700000	86.900000	47.900000	48.700000	Acetyl (+42), Label:13C(6) (+6)	993.520000	2.000000	0.000660	0.670000	2.000000	10.000000	0.309700	0.203600	0.669500	0.856500	0.369150	0.431100	0.771014	1.262929	1.819386	0.389217	0.295386	1.164145	0.996365	0.501256	0.644443	0.515677	0.537869	0.871854	0.633753	0.444837	0.075627	0.027597	0.835754	0.277571	0.026071	0.024080	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Serine/threonine-protein kinase PRP4 homolog OS=Homo sapiens GN=PRPF4B PE=1 SV=3	PRP4B_HUMAN	PRP4B_HUMAN	Serine/threonine-protein kinase PRP4 homolog OS=Homo sapiens GN=PRPF4B PE=1 SV=3	99.800000	0.007510	116975.000000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.10766.10766.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10766"	AAAETQSLR	A[+42]AAETQSLR	M	E	99.700000	80.200000	50.600000	47.900000	Acetyl (+42)	987.500000	2.000000	0.001000	1.000000	2.000000	10.000000	0.309700	0.203600	0.669500	0.856500	0.369150	0.431100	0.771014	1.262929	1.819386	0.389217	0.295386	1.164145	0.996365	0.501256	0.644443	0.515677	0.537869	0.871854	0.633753	0.444837	0.075627	0.027597	0.833101	0.276769	0.025481	0.023898	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Serine/threonine-protein kinase PRP4 homolog OS=Homo sapiens GN=PRPF4B PE=1 SV=3	PRP4B_HUMAN	PRP4B_HUMAN	Serine/threonine-protein kinase PRP4 homolog OS=Homo sapiens GN=PRPF4B PE=1 SV=3	99.000000	0.004480	116975.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.10083.10083.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10083"	AAAETQSLR	A[+42]AAETQSLR	M	E	99.700000	67.100000	50.600000	32.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	997.510000	2.000000	0.000610	0.610000	2.000000	10.000000	0.309700	0.203600	0.669500	0.856500	0.369150	0.431100	0.771014	1.262929	1.819386	0.389217	0.295386	1.164145	0.996365	0.501256	0.644443	0.515677	0.537869	0.871854	0.633753	0.444837	0.075627	0.027597	0.822654	0.275971	0.025440	0.023862	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform Cytoplasmic of Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH	sp|P07954-2|FUMH_HUMAN	FUMH_HUMAN	Isoform Cytoplasmic of Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH	100.000000	0.002310	50195.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.18222.18222.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18222"	AAAEVNQDYGLD	A[+28]AAEVNQDYGLD	R	P	99.100000	52.100000	47.600000	39.400000	Dimethyl (+28)	1292.590000	2.000000	-0.003100	-2.400000	59.000000	70.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Nuclear pore complex protein Nup160 OS=Homo sapiens GN=NUP160 PE=1 SV=3	sp|Q12769|NU160_HUMAN	NU160_HUMAN	Nuclear pore complex protein Nup160 OS=Homo sapiens GN=NUP160 PE=1 SV=3	96.100000	0.005010	162107.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.11164.11164.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11164"	AAAGALER	A[+42]AAGALER	M	S	99.000000	74.200000	49.700000	37.300000	Acetyl (+42), Label:13C(6)15N(4) (+10)	809.430000	2.000000	-0.001700	-2.000000	36.000000	43.000000	4.118933	1.749267	2.030367	0.603800	0.187800	0.312050	0.592714	4.014771	6.398386	5.176490	2.537866	3.530458	0.702399	0.255007	0.466477	0.396425	1.709853	3.066123	2.091771	1.500909	0.308438	0.153410	1.000000	1.000000	0.024957	0.023790	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction3A (Nsco_Tails_biological_replicate_3_fraction3A_127089)	Nuclear pore complex protein Nup160 OS=Homo sapiens GN=NUP160 PE=1 SV=3	sp|Q12769|NU160_HUMAN	NU160_HUMAN	Nuclear pore complex protein Nup160 OS=Homo sapiens GN=NUP160 PE=1 SV=3	97.200000	0.079400	162107.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction3A.7842.7842.2 File:"Nsco_Tails_biological_replicate_3_fraction3A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7842"	AAAGALER	A[+42]AAGALER	M	S	99.000000	66.200000	49.600000	23.300000	Acetyl (+42)	799.430000	2.000000	0.006600	8.300000	36.000000	43.000000	4.118933	1.749267	2.030367	0.603800	0.187800	0.312050	0.592714	4.014771	6.398386	5.176490	2.537866	3.530458	0.702399	0.255007	0.466477	0.396425	1.709853	3.066123	2.091771	1.500909	0.308438	0.153410	1.000000	1.000000	0.024878	0.023754	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Zinc finger protein 598 OS=Homo sapiens GN=ZNF598	sp|Q86UK7-2|ZN598_HUMAN	ZN598_HUMAN	Isoform 2 of Zinc finger protein 598 OS=Homo sapiens GN=ZNF598	98.900000	0.002500	97788.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.3050.3050.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3050"	AAAGGAEGR	A[+42]AAGGAEGR	M	R	99.700000	82.100000	47.300000	37.100000	Acetyl (+42), Label:13C(6)15N(4) (+10)	810.390000	2.000000	-0.000560	-0.690000	2.000000	10.000000	0.986467	0.672600	0.775133	0.783950	0.568600	1.302500	NaN	NaN	NaN	1.239747	0.975820	1.347824	0.911967	0.772082	1.947081	NaN	NaN	NaN	1.075857	0.873951	0.096239	0.073872	1.000000	0.730299	0.364304	0.333814	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3	RAB21_HUMAN	RAB21_HUMAN	Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3	97.400000	0.005760	24329.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.4307.4307.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4307"	AAAGGGGGGAAAAGR	A[+42]AAGGGGGGAAAAGR	M	A	99.700000	113.000000	49.600000	83.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1122.540000	2.000000	0.000310	0.270000	2.000000	16.000000	0.546700	0.252900	0.466200	0.698650	0.474600	0.671650	NaN	NaN	5.910986	0.687068	0.366912	0.810642	0.812738	0.644443	1.004036	NaN	NaN	2.832560	0.749903	0.505677	0.053219	0.170501	0.541550	1.000000	0.363732	0.333333	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3	RAB21_HUMAN	RAB21_HUMAN	Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3	98.800000	0.002630	24329.900000	1.000000	1.000000	2.000000	Spectrum768 scans:10948,	AAAGGGGGGAAAAGR	A[+42]AAGGGGGGAAAAGR	M	A	99.700000	103.000000	45.800000	58.000000	Acetyl (+42)	1112.530000	2.000000	-0.000730	-0.650000	2.000000	16.000000	0.546700	0.252900	0.466200	0.698650	0.474600	0.671650	NaN	NaN	5.910986	0.687068	0.366912	0.810642	0.812738	0.644443	1.004036	NaN	NaN	2.832560	0.749903	0.505677	0.053219	0.170501	0.539967	1.000000	0.363161	0.332854	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Zinc finger protein AEBP2 OS=Homo sapiens GN=AEBP2	sp|Q6ZN18|AEBP2_HUMAN	AEBP2_HUMAN	Zinc finger protein AEBP2 OS=Homo sapiens GN=AEBP2 PE=1 SV=2	98.900000	0.027500	54448.800000	1.000000	6.000000	11.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.32699.32699.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32699"	AAAITDMADLEELSR	A[+42]AAITDMADLEELSR	M	L	99.700000	72.700000	51.200000	67.300000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10)	1672.790000	2.000000	-0.000073	-0.044000	2.000000	16.000000	0.600100	0.915900	1.526300	0.677450	0.684650	1.008150	NaN	NaN	NaN	0.754179	1.328804	2.653973	0.788076	0.929663	1.507063	NaN	NaN	NaN	0.771127	1.129233	0.013990	0.111361	0.141533	1.000000	0.356996	0.303587	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Zinc finger protein AEBP2 OS=Homo sapiens GN=AEBP2	sp|Q6ZN18|AEBP2_HUMAN	AEBP2_HUMAN	Zinc finger protein AEBP2 OS=Homo sapiens GN=AEBP2 PE=1 SV=2	98.900000	0.027500	54448.800000	1.000000	6.000000	11.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.32234.32234.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32234"	AAAITDMADLEELSR	A[+42]AAITDMADLEELSR	M	L	99.700000	86.800000	50.000000	77.600000	Acetyl (+42), Oxidation (+16)	1662.770000	2.000000	-0.012000	-7.100000	2.000000	16.000000	0.600100	0.915900	1.526300	0.677450	0.684650	1.008150	NaN	NaN	NaN	0.754179	1.328804	2.653973	0.788076	0.929663	1.507063	NaN	NaN	NaN	0.771127	1.129233	0.013990	0.111361	0.141121	1.000000	0.352642	0.303189	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Zinc finger protein AEBP2 OS=Homo sapiens GN=AEBP2	sp|Q6ZN18|AEBP2_HUMAN	AEBP2_HUMAN	Zinc finger protein AEBP2 OS=Homo sapiens GN=AEBP2 PE=1 SV=2	98.900000	0.027500	54448.800000	1.000000	6.000000	11.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.32236.32236.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32236"	AAAITDMADLEELSR	A[+42]AAITDMADLEELSR	M	L	99.700000	90.300000	52.700000	84.300000	Acetyl (+42), Oxidation (+16), Label:13C(6) (+6)	1668.810000	2.000000	0.008100	4.800000	2.000000	16.000000	0.600100	0.915900	1.526300	0.677450	0.684650	1.008150	NaN	NaN	NaN	0.754179	1.328804	2.653973	0.788076	0.929663	1.507063	NaN	NaN	NaN	0.771127	1.129233	0.013990	0.111361	0.140712	1.000000	0.346827	0.302792	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Zinc finger protein AEBP2 OS=Homo sapiens GN=AEBP2	sp|Q6ZN18|AEBP2_HUMAN	AEBP2_HUMAN	Zinc finger protein AEBP2 OS=Homo sapiens GN=AEBP2 PE=1 SV=2	98.900000	0.013400	54448.800000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.38006.38006.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38006"	AAAITDMADLEELSR	A[+42]AAITDMADLEELSR	M	L	99.700000	90.500000	53.100000	81.200000	Acetyl (+42), Label:13C(6) (+6)	1652.810000	2.000000	0.003000	1.800000	2.000000	16.000000	0.600100	0.915900	1.526300	0.677450	0.684650	1.008150	NaN	NaN	NaN	0.754179	1.328804	2.653973	0.788076	0.929663	1.507063	NaN	NaN	NaN	0.771127	1.129233	0.013990	0.111361	0.140306	0.944795	0.340196	0.295823	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Zinc finger protein AEBP2 OS=Homo sapiens GN=AEBP2	sp|Q6ZN18|AEBP2_HUMAN	AEBP2_HUMAN	Zinc finger protein AEBP2 OS=Homo sapiens GN=AEBP2 PE=1 SV=2	98.900000	0.013400	54448.800000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.37996.37996.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37996"	AAAITDMADLEELSR	A[+42]AAITDMADLEELSR	M	L	99.700000	96.100000	51.800000	83.500000	Acetyl (+42)	1646.780000	2.000000	0.000650	0.390000	2.000000	16.000000	0.600100	0.915900	1.526300	0.677450	0.684650	1.008150	NaN	NaN	NaN	0.754179	1.328804	2.653973	0.788076	0.929663	1.507063	NaN	NaN	NaN	0.771127	1.129233	0.013990	0.111361	0.139901	0.942490	0.338702	0.295445	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Zinc finger protein AEBP2 OS=Homo sapiens GN=AEBP2	sp|Q6ZN18|AEBP2_HUMAN	AEBP2_HUMAN	Zinc finger protein AEBP2 OS=Homo sapiens GN=AEBP2 PE=1 SV=2	98.900000	0.013400	54448.800000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.37997.37997.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37997"	AAAITDMADLEELSR	A[+42]AAITDMADLEELSR	M	L	99.700000	97.400000	51.900000	91.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1656.790000	2.000000	-0.001900	-1.200000	2.000000	16.000000	0.600100	0.915900	1.526300	0.677450	0.684650	1.008150	NaN	NaN	NaN	0.754179	1.328804	2.653973	0.788076	0.929663	1.507063	NaN	NaN	NaN	0.771127	1.129233	0.013990	0.111361	0.139499	0.894493	0.330476	0.295068	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Short transient receptor potential channel 4-associated protein OS=Homo sapiens GN=TRPC4AP PE=1 SV=2	sp|Q8TEL6-3|TP4AP_HUMAN	TP4AP_HUMAN	Isoform 3 of Short transient receptor potential channel 4-associated protein OS=Homo sapiens GN=TRPC4AP	96.900000	0.002500	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.7757.7757.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7757"	AAAPVAAGSGAGR	A[+42]AAPVAAGSGAGR	M	G	99.200000	53.600000	51.500000	40.300000	Acetyl (+42)	1096.560000	2.000000	-0.003500	-3.200000	0.000000	0.000000	0.819667	0.563400	0.688567	0.900550	0.301800	0.331400	NaN	NaN	NaN	1.030120	0.817390	1.197299	1.047608	0.409804	0.495403	NaN	NaN	NaN	1.038864	0.613597	0.005358	0.204142	0.053274	1.000000	0.326742	0.282458	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Lysophospholipase-like protein 1 OS=Homo sapiens GN=LYPLAL1	sp|Q5VWZ2-2|LYPL1_HUMAN	LYPL1_HUMAN	Isoform 2 of Lysophospholipase-like protein 1 OS=Homo sapiens GN=LYPLAL1	97.400000	0.005760	24458.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.12605.12605.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12605"	AAASGSVLQR	A[+42]AASGSVLQR	M	C	99.700000	68.500000	51.800000	49.300000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1010.540000	2.000000	0.001200	1.200000	2.000000	11.000000	0.582933	0.325200	0.560467	0.691500	1.009500	1.451450	4.085843	12.372614	4.926000	0.732604	0.471806	0.974555	0.804421	1.370765	2.169744	2.732731	5.269379	2.360552	1.423252	2.370650	0.161904	0.248679	1.000000	1.000000	0.022246	0.019072	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 2 of Lysophospholipase-like protein 1 OS=Homo sapiens GN=LYPLAL1	sp|Q5VWZ2|LYPL1_HUMAN	LYPL1_HUMAN	Lysophospholipase-like protein 1 OS=Homo sapiens GN=LYPLAL1 PE=1 SV=3	96.900000	0.002360	26299.000000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.26690.26690.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26690"	AAASGSVLQR	A[+42]AASGSVLQR	M	C	99.600000	68.100000	51.800000	46.200000	Acetyl (+42)	1000.530000	2.000000	0.004000	4.000000	2.000000	11.000000	0.582933	0.325200	0.560467	0.691500	1.009500	1.451450	4.085843	12.372614	4.926000	0.732604	0.471806	0.974555	0.804421	1.370765	2.169744	2.732731	5.269379	2.360552	1.423252	2.370650	0.161904	0.248679	1.000000	1.000000	0.021577	0.019049	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.039500	29487.900000	8.000000	18.000000	30.000000	Spectrum36688 scans:6181,	AAATGATPIAGR	AAATGATPIAGR	F	F	99.300000	58.000000	49.200000	39.700000	Dimethyl (+28), Label:13C(6) (+6)	1089.620000	2.000000	0.000089	0.082000	91.000000	102.000000	5.800567	10.596433	0.515400	NaN	2.058500	NaN	NaN	NaN	NaN	7.289892	15.373489	0.896192	NaN	2.795166	NaN	NaN	NaN	NaN	7.289892	9.084327	NaN	0.326483	NaN	1.000000	1.000000	0.276715	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.039500	29487.900000	8.000000	18.000000	30.000000	Spectrum15804 scans:5244,	AAATGATPIAGR	AAATGATPIAGR	F	F	99.600000	67.000000	49.200000	44.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1093.610000	2.000000	0.000730	0.670000	91.000000	102.000000	5.800567	10.596433	0.515400	NaN	2.058500	NaN	NaN	NaN	NaN	7.289892	15.373489	0.896192	NaN	2.795166	NaN	NaN	NaN	NaN	7.289892	9.084327	NaN	0.326483	NaN	1.000000	1.000000	0.274743	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.039500	29487.900000	8.000000	18.000000	30.000000	Spectrum15802 scans:5242,	AAATGATPIAGR	AAATGATPIAGR	F	F	99.700000	65.100000	49.000000	38.100000	Dimethyl (+28)	1083.600000	2.000000	-0.000280	-0.260000	91.000000	102.000000	5.800567	10.596433	0.515400	NaN	2.058500	NaN	NaN	NaN	NaN	7.289892	15.373489	0.896192	NaN	2.795166	NaN	NaN	NaN	NaN	7.289892	9.084327	NaN	0.326483	NaN	1.000000	1.000000	0.274417	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Interferon regulatory factor 2-binding protein 2 OS=Homo sapiens GN=IRF2BP2 PE=1 SV=2	sp|Q7Z5L9|I2BP2_HUMAN	I2BP2_HUMAN	Interferon regulatory factor 2-binding protein 2 OS=Homo sapiens GN=IRF2BP2 PE=1 SV=2	99.900000	0.007510	61006.200000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.21841.21841.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21841"	AAAVAVAAASR	A[+42]AAVAVAAASR	M	R	99.700000	63.600000	52.200000	37.100000	Acetyl (+42)	998.550000	2.000000	0.002800	2.800000	2.000000	12.000000	3.161067	2.670567	0.849800	0.849850	0.428250	0.504000	0.679086	0.903043	1.413600	3.972687	3.874504	1.477656	0.988629	0.581506	0.753420	0.454192	0.384597	0.677401	1.805169	1.613536	0.240916	0.290090	1.000000	1.000000	0.019965	0.018067	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Interferon regulatory factor 2-binding protein 2 OS=Homo sapiens GN=IRF2BP2 PE=1 SV=2	sp|Q7Z5L9|I2BP2_HUMAN	I2BP2_HUMAN	Interferon regulatory factor 2-binding protein 2 OS=Homo sapiens GN=IRF2BP2 PE=1 SV=2	99.900000	0.007510	61006.200000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.21894.21894.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21894"	AAAVAVAAASR	A[+42]AAVAVAAASR	M	R	99.700000	60.300000	52.200000	41.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1008.560000	2.000000	0.000680	0.670000	2.000000	12.000000	3.161067	2.670567	0.849800	0.849850	0.428250	0.504000	0.679086	0.903043	1.413600	3.972687	3.874504	1.477656	0.988629	0.581506	0.753420	0.454192	0.384597	0.677401	1.805169	1.613536	0.240916	0.290090	1.000000	1.000000	0.019890	0.017276	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2	ALKB1_HUMAN	ALKB1_HUMAN	Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2	98.800000	0.002630	43814.600000	1.000000	2.000000	2.000000	Spectrum66317 scans:40663,	AAAVGSVATLATEPGEDAFR	A[+42]AAVGSVATLATEPGEDAFR	M	K	99.700000	93.500000	50.800000	78.200000	Acetyl (+42)	1973.970000	2.000000	-0.002400	-1.200000	5.000000	24.000000	NaN	NaN	NaN	0.792300	0.300150	0.361050	NaN	NaN	NaN	NaN	NaN	NaN	0.921681	0.407563	0.539726	NaN	NaN	NaN	0.921681	0.407563	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2	ALKB1_HUMAN	ALKB1_HUMAN	Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2	96.000000	0.004630	43814.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction6A.40671.40671.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40671"	AAAVGSVATLATEPGEDAFR	A[+42]AAVGSVATLATEPGEDAFR	M	K	99.700000	73.100000	54.800000	58.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1983.970000	2.000000	-0.008800	-4.400000	5.000000	24.000000	NaN	NaN	NaN	0.792300	0.300150	0.361050	NaN	NaN	NaN	NaN	NaN	NaN	0.921681	0.407563	0.539726	NaN	NaN	NaN	0.921681	0.407563	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	UPF0600 protein C5orf51 OS=Homo sapiens GN=C5orf51 PE=1 SV=1	CE051_HUMAN	CE051_HUMAN	UPF0600 protein C5orf51 OS=Homo sapiens GN=C5orf51 PE=1 SV=1	98.100000	0.001320	33603.400000	1.000000	1.000000	1.000000	Spectrum30042 scans:15477,	AAAVSSVVR	A[+42]AAVSSVVR	M	R	99.600000	59.200000	47.600000	11.700000	Acetyl (+42)	900.500000	2.000000	-0.000510	-0.560000	2.000000	10.000000	1.417233	0.789333	0.544433	0.521100	0.571050	1.057500	NaN	NaN	NaN	1.781115	1.145178	0.946676	0.606195	0.775409	1.580836	NaN	NaN	NaN	1.193655	0.960294	0.291158	0.121086	1.000000	0.862771	0.284543	0.244538	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	UPF0600 protein C5orf51 OS=Homo sapiens GN=C5orf51 PE=1 SV=1	CE051_HUMAN	CE051_HUMAN	UPF0600 protein C5orf51 OS=Homo sapiens GN=C5orf51 PE=1 SV=1	98.900000	0.002500	33603.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.19269.19269.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19269"	AAAVSSVVR	A[+42]AAVSSVVR	M	R	99.700000	68.100000	51.600000	36.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	910.510000	2.000000	-0.005600	-6.100000	2.000000	10.000000	1.417233	0.789333	0.544433	0.521100	0.571050	1.057500	NaN	NaN	NaN	1.781115	1.145178	0.946676	0.606195	0.775409	1.580836	NaN	NaN	NaN	1.193655	0.960294	0.291158	0.121086	1.000000	0.852271	0.281770	0.244280	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3	PSD11_HUMAN	PSD11_HUMAN	26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3	100.000000	0.017100	47448.300000	3.000000	5.000000	13.000000	Spectrum20870 scans:18922,	AAAVVEFQR	A[+42]AAVVEFQR	A	A	99.000000	51.300000	48.100000	26.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1041.550000	2.000000	-0.000620	-0.590000	3.000000	11.000000	0.507800	0.218933	0.633067	0.053100	0.869300	27.471750	3.574500	NaN	NaN	0.638180	0.317632	1.100794	0.061771	1.180392	41.066971	2.390730	NaN	NaN	1.030227	0.749012	0.279090	0.332656	1.000000	1.000000	0.019118	0.242234	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1	sp|Q14980-2|NUMA1_HUMAN	NUMA1_HUMAN	Isoform 2 of Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1	100.000000	0.007900	236498.000000	6.000000	6.000000	6.000000	Spectrum1834 scans:14261,	AADALEEQQR	A[+28]ADALEEQQR	R	C	99.400000	59.100000	47.900000	23.100000	Dimethyl (+28), Label:13C(6) (+6)	1163.590000	2.000000	-0.001800	-1.500000	725.000000	734.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Density-regulated protein OS=Homo sapiens GN=DENR PE=1 SV=2	DENR_HUMAN	DENR_HUMAN	Density-regulated protein OS=Homo sapiens GN=DENR PE=1 SV=2	99.300000	0.001320	22074.400000	1.000000	1.000000	1.000000	Spectrum40450 scans:10567,	AADISESSGADCKGDPR	A[+42]ADISESSGADC[+57]KGDPR	M	N	98.700000	45.600000	44.400000	27.500000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1822.810000	2.000000	-0.001800	-1.000000	2.000000	18.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6	GCN1L_HUMAN	GCN1L_HUMAN	Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6	99.800000	0.008960	292746.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.12152.12152.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12152"	AADTQVSETLKR	A[+42]ADTQVSETLKR	M	F	99.700000	74.200000	54.300000	57.000000	Acetyl (+42), Dimethyl (+28)	1387.730000	2.000000	-0.002100	-1.500000	2.000000	13.000000	6.267267	0.523867	0.194867	15.442050	3.731050	0.246250	62.488129	NaN	NaN	7.876419	0.760035	0.338840	17.963705	5.066264	0.368114	41.793886	NaN	NaN	22.544670	2.913149	0.005753	0.405202	0.041677	1.000000	0.018822	0.237753	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6	GCN1L_HUMAN	GCN1L_HUMAN	Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6	99.800000	0.008960	292746.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.12156.12156.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12156"	AADTQVSETLKR	A[+42]ADTQVSETLKR	M	F	99.700000	81.200000	54.800000	62.800000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1405.750000	2.000000	-0.001100	-0.750000	2.000000	13.000000	6.267267	0.523867	0.194867	15.442050	3.731050	0.246250	62.488129	NaN	NaN	7.876419	0.760035	0.338840	17.963705	5.066264	0.368114	41.793886	NaN	NaN	22.544670	2.913149	0.005753	0.405202	0.041590	1.000000	0.018799	0.236296	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 3 of General transcription factor 3C polypeptide 5 OS=Homo sapiens GN=GTF3C5	sp|Q9Y5Q8-3|TF3C5_HUMAN	TF3C5_HUMAN	Isoform 3 of General transcription factor 3C polypeptide 5 OS=Homo sapiens GN=GTF3C5	97.400000	0.002880	60352.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.40350.40350.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40350"	AAEAADLGLGAAVPVELR	A[+42]AEAADLGLGAAVPVELR	M	R	99.700000	104.000000	57.000000	89.000000	Acetyl (+42)	1763.940000	2.000000	0.001200	0.670000	2.000000	19.000000	0.604800	0.193100	0.319200	0.555150	0.185850	0.336600	NaN	NaN	NaN	0.760085	0.280153	0.555034	0.645805	0.252359	0.503177	NaN	NaN	NaN	0.702945	0.266256	0.051635	0.033197	0.371732	0.223678	0.275397	0.236054	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of General transcription factor 3C polypeptide 5 OS=Homo sapiens GN=GTF3C5	sp|Q9Y5Q8|TF3C5_HUMAN	TF3C5_HUMAN	General transcription factor 3C polypeptide 5 OS=Homo sapiens GN=GTF3C5 PE=1 SV=2	98.800000	0.002630	59554.600000	1.000000	2.000000	2.000000	Spectrum13300 scans:49066,	AAEAADLGLGAAVPVELR	A[+42]AEAADLGLGAAVPVELR	M	R	99.700000	94.900000	52.600000	67.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1773.950000	2.000000	-0.001500	-0.840000	2.000000	19.000000	0.604800	0.193100	0.319200	0.555150	0.185850	0.336600	NaN	NaN	NaN	0.760085	0.280153	0.555034	0.645805	0.252359	0.503177	NaN	NaN	NaN	0.702945	0.266256	0.051635	0.033197	0.369433	0.221527	0.275069	0.234143	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.032900	140943.500000	9.000000	17.000000	25.000000	Spectrum18192 scans:9979,	AAECNIVVTQPR	A[+28]AEC[+57]NIVVTQPR	R	R	99.700000	71.600000	50.000000	52.000000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1394.720000	2.000000	-0.000680	-0.480000	435.000000	446.000000	5.354567	6.767133	0.818267	NaN	NaN	1.153550	NaN	NaN	NaN	6.729379	9.817874	1.422825	NaN	NaN	1.724419	NaN	NaN	NaN	6.729379	9.817874	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.032900	140943.500000	9.000000	17.000000	25.000000	Spectrum18190 scans:9973,	AAECNIVVTQPR	A[+28]AEC[+57]NIVVTQPR	R	R	99.700000	79.000000	49.900000	56.900000	Dimethyl (+28), Carbamidomethyl (+57)	1384.710000	2.000000	-0.001100	-0.780000	435.000000	446.000000	5.354567	6.767133	0.818267	NaN	NaN	1.153550	NaN	NaN	NaN	6.729379	9.817874	1.422825	NaN	NaN	1.724419	NaN	NaN	NaN	6.729379	9.817874	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.032900	140943.500000	9.000000	17.000000	25.000000	Spectrum18205 scans:10004,	AAECNIVVTQPR	A[+28]AEC[+57]NIVVTQPR	R	R	99.700000	84.400000	50.500000	57.400000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1390.730000	2.000000	-0.000220	-0.160000	435.000000	446.000000	5.354567	6.767133	0.818267	NaN	NaN	1.153550	NaN	NaN	NaN	6.729379	9.817874	1.422825	NaN	NaN	1.724419	NaN	NaN	NaN	6.729379	9.817874	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Immunoglobulin-binding protein 1 OS=Homo sapiens GN=IGBP1 PE=1 SV=1	IGBP1_HUMAN	IGBP1_HUMAN	Immunoglobulin-binding protein 1 OS=Homo sapiens GN=IGBP1 PE=1 SV=1	98.800000	0.003950	39204.500000	1.000000	2.000000	3.000000	Spectrum31079 scans:19341,	AAEDELQLPR	A[+42]AEDELQLPR	M	L	99.700000	89.900000	48.000000	34.700000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1192.600000	2.000000	0.000520	0.440000	2.000000	11.000000	1.676633	0.297733	0.230267	0.805800	0.383750	0.476600	0.437471	0.663629	1.677814	2.107117	0.431957	0.400394	0.937385	0.521081	0.712460	0.292594	0.282633	0.804013	1.112366	0.411890	0.171217	0.027357	1.000000	0.179786	0.018534	0.015679	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Immunoglobulin-binding protein 1 OS=Homo sapiens GN=IGBP1 PE=1 SV=1	IGBP1_HUMAN	IGBP1_HUMAN	Immunoglobulin-binding protein 1 OS=Homo sapiens GN=IGBP1 PE=1 SV=1	100.000000	0.013400	39204.500000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.21725.21725.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21725"	AAEDELQLPR	A[+42]AEDELQLPR	M	L	99.700000	75.200000	51.300000	50.000000	Acetyl (+42)	1182.590000	2.000000	0.001000	0.850000	2.000000	11.000000	1.676633	0.297733	0.230267	0.805800	0.383750	0.476600	0.437471	0.663629	1.677814	2.107117	0.431957	0.400394	0.937385	0.521081	0.712460	0.292594	0.282633	0.804013	1.112366	0.411890	0.171217	0.027357	1.000000	0.179447	0.018171	0.015570	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	sp|P68402|PA1B2_HUMAN	PA1B2_HUMAN	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	100.000000	0.014500	25551.500000	4.000000	11.000000	11.000000	Spectrum34745 scans:3976,	AAEDIQGDDR	AAEDIQGDDR	H	W	99.700000	57.800000	41.300000	33.300000		1088.470000	2.000000	-0.000420	-0.390000	14.000000	23.000000	0.565700	1.408033	3.001300	13.069950	0.545050	1.205300	NaN	NaN	NaN	0.710946	2.042799	5.218745	15.204246	0.740105	1.801779	NaN	NaN	NaN	7.957596	1.391452	0.454816	0.278718	1.000000	1.000000	0.266206	0.228139	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	sp|P68402|PA1B2_HUMAN	PA1B2_HUMAN	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	100.000000	0.014500	25551.500000	4.000000	11.000000	11.000000	Spectrum35116 scans:4395,	AAEDIQGDDR	AAEDIQGDDR	H	W	99.700000	68.200000	43.500000	27.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1126.510000	2.000000	-0.000810	-0.720000	14.000000	23.000000	0.565700	1.408033	3.001300	13.069950	0.545050	1.205300	NaN	NaN	NaN	0.710946	2.042799	5.218745	15.204246	0.740105	1.801779	NaN	NaN	NaN	7.957596	1.391452	0.454816	0.278718	1.000000	1.000000	0.265900	0.227466	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	sp|P68402|PA1B2_HUMAN	PA1B2_HUMAN	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	100.000000	0.014500	25551.500000	4.000000	11.000000	11.000000	Spectrum35117 scans:4396,	AAEDIQGDDR	AAEDIQGDDR	H	W	99.700000	70.100000	43.500000	46.000000	Dimethyl (+28)	1116.500000	2.000000	-0.001200	-1.100000	14.000000	23.000000	0.565700	1.408033	3.001300	13.069950	0.545050	1.205300	NaN	NaN	NaN	0.710946	2.042799	5.218745	15.204246	0.740105	1.801779	NaN	NaN	NaN	7.957596	1.391452	0.454816	0.278718	1.000000	1.000000	0.265595	0.224378	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	sp|P68402|PA1B2_HUMAN	PA1B2_HUMAN	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	100.000000	0.009250	25551.500000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction6A.4440.4440.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4440"	AAEDIQGDDR	AAEDIQGDDR	H	W	99.200000	52.800000	48.200000	28.800000	Dimethyl (+28), Label:13C(6) (+6)	1122.520000	2.000000	-0.000960	-0.860000	14.000000	23.000000	0.565700	1.408033	3.001300	13.069950	0.545050	1.205300	NaN	NaN	NaN	0.710946	2.042799	5.218745	15.204246	0.740105	1.801779	NaN	NaN	NaN	7.957596	1.391452	0.454816	0.278718	1.000000	1.000000	0.262879	0.223727	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Non-brain of Clathrin light chain A OS=Homo sapiens GN=CLTA	sp|P09496|CLCA_HUMAN	CLCA_HUMAN	Clathrin light chain A OS=Homo sapiens GN=CLTA PE=1 SV=1	100.000000	0.003950	27058.700000	2.000000	3.000000	3.000000	Spectrum12020 scans:43294,	AAEEAFVNDIDESSPGTEWER	A[+28]AEEAFVNDIDESSPGTEWER	Q	V	99.700000	80.500000	44.200000	68.400000	Dimethyl (+28)	2379.040000	3.000000	-0.006600	-2.800000	193.000000	213.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Non-brain of Clathrin light chain A OS=Homo sapiens GN=CLTA	sp|P09496-2|CLCA_HUMAN	CLCA_HUMAN	Isoform Non-brain of Clathrin light chain A OS=Homo sapiens GN=CLTA	100.000000	0.003950	23644.000000	2.000000	3.000000	3.000000	Spectrum12030 scans:43317,	AAEEAFVNDIDESSPGTEWER	A[+28]AEEAFVNDIDESSPGTEWER	R	V	99.700000	64.500000	44.500000	60.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2389.050000	3.000000	-0.006200	-2.600000	163.000000	183.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=4 SV=1	sp|Q96AE4|FUBP1_HUMAN	FUBP1_HUMAN	Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=1 SV=3	100.000000	0.006590	67542.600000	4.000000	5.000000	5.000000	Spectrum61494 scans:35136,	AAEIITDLLR	A[+28]AEIITDLLR	H	S	99.700000	69.400000	49.200000	33.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1151.680000	2.000000	0.000410	0.350000	335.000000	344.000000	4.633333	1.654433	0.446667	0.448450	0.171500	2.303650	NaN	NaN	NaN	5.822965	2.400280	0.776677	0.521681	0.232874	3.443680	NaN	NaN	NaN	3.172323	1.316577	0.443117	0.438428	1.000000	1.000000	0.261986	0.222009	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=4 SV=1	E9PEB5_HUMAN	E9PEB5_HUMAN	Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=4 SV=1	100.000000	0.009250	68886.100000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction6A.35172.35172.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35172"	AAEIITDLLR	A[+28]AEIITDLLR	H	S	99.600000	69.500000	53.400000	38.800000	Dimethyl (+28), Label:13C(6) (+6)	1147.690000	2.000000	-0.005600	-4.800000	335.000000	344.000000	4.633333	1.654433	0.446667	0.448450	0.171500	2.303650	NaN	NaN	NaN	5.822965	2.400280	0.776677	0.521681	0.232874	3.443680	NaN	NaN	NaN	3.172323	1.316577	0.443117	0.438428	1.000000	1.000000	0.261689	0.218652	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Transcription elongation factor B polypeptide 3 OS=Homo sapiens GN=TCEB3 PE=1 SV=2	ELOA1_HUMAN	ELOA1_HUMAN	Transcription elongation factor B polypeptide 3 OS=Homo sapiens GN=TCEB3 PE=1 SV=2	98.900000	0.010000	89892.300000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40306.40306.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40306"	AAESALQVVEKLQAR	A[+42]AESALQVVEKLQAR	M	L	99.700000	93.600000	56.900000	76.100000	Acetyl (+42), Dimethyl (+28)	1681.940000	2.000000	-0.001100	-0.670000	28.000000	42.000000	2.305500	1.772000	0.739400	27.315100	1.877950	0.077400	NaN	NaN	NaN	2.897449	2.570848	1.285689	31.775600	2.550003	0.115704	NaN	NaN	NaN	17.336524	2.560426	0.320459	0.002591	1.000000	0.015803	0.261394	0.218445	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Transcription elongation factor B polypeptide 3 OS=Homo sapiens GN=TCEB3 PE=1 SV=2	ELOA1_HUMAN	ELOA1_HUMAN	Transcription elongation factor B polypeptide 3 OS=Homo sapiens GN=TCEB3 PE=1 SV=2	98.900000	0.008960	89892.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.34083.34083.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34083"	AAESALQVVEKLQAR	A[+42]AESALQVVEKLQAR	M	L	99.700000	97.400000	57.100000	83.400000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1699.960000	2.000000	-0.002400	-1.400000	28.000000	42.000000	2.305500	1.772000	0.739400	27.315100	1.877950	0.077400	NaN	NaN	NaN	2.897449	2.570848	1.285689	31.775600	2.550003	0.115704	NaN	NaN	NaN	17.336524	2.560426	0.320459	0.002591	1.000000	0.015530	0.261099	0.213999	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 3 of Mediator of RNA polymerase II transcription subunit 12 OS=Homo sapiens GN=MED12	sp|Q93074-2|MED12_HUMAN	MED12_HUMAN	Isoform 2 of Mediator of RNA polymerase II transcription subunit 12 OS=Homo sapiens GN=MED12	98.900000	0.002500	243375.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.32595.32595.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32595"	AAFGILSYEHR	A[+42]AFGILSYEHR	M	P	99.700000	81.100000	51.900000	61.500000	Acetyl (+42)	1304.650000	2.000000	-0.002800	-2.100000	2.000000	12.000000	0.908167	0.953967	1.672967	1.041450	0.280900	0.247850	NaN	NaN	NaN	1.141343	1.384031	2.909001	1.211517	0.381424	0.370506	NaN	NaN	NaN	1.176430	0.882728	0.018981	0.328804	0.125458	1.000000	0.260804	0.213802	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2	GLRX3_HUMAN	GLRX3_HUMAN	Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2	100.000000	0.017100	37414.800000	3.000000	7.000000	13.000000	Spectrum73557 scans:51680,	AAGAAEAAVAAVEEVG	A[+42]AGAAEAAVAAVEEVG	M	S	99.700000	68.300000	48.000000	42.700000	Acetyl (+42)	1426.690000	2.000000	-0.000230	-0.160000	2.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2	GLRX3_HUMAN	GLRX3_HUMAN	Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2	100.000000	0.017300	37414.800000	1.000000	4.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.55100.55100.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=55100"	AAGAAEAAVAAVEEVGSAGQFEELLR	A[+42]AGAAEAAVAAVEEVGSAGQFEELLR	M	L	99.700000	125.000000	58.500000	112.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	2567.290000	2.000000	0.011000	4.300000	2.000000	27.000000	4.064367	0.788767	0.362600	0.693050	0.347750	0.516600	NaN	NaN	NaN	5.107913	1.144356	0.630499	0.806224	0.472198	0.772255	NaN	NaN	NaN	2.957069	0.808277	0.400339	0.250860	1.000000	1.000000	0.260217	0.208596	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2	GLRX3_HUMAN	GLRX3_HUMAN	Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2	100.000000	0.017100	37414.800000	3.000000	7.000000	13.000000	Spectrum74549 scans:59033,	AAGAAEAAVAAVEEVGSAGQFEELLR	A[+42]AGAAEAAVAAVEEVGSAGQFEELLR	M	L	99.700000	125.000000	53.400000	112.000000	Acetyl (+42)	2557.270000	2.000000	0.000750	0.290000	2.000000	27.000000	4.064367	0.788767	0.362600	0.693050	0.347750	0.516600	NaN	NaN	NaN	5.107913	1.144356	0.630499	0.806224	0.472198	0.772255	NaN	NaN	NaN	2.957069	0.808277	0.400339	0.250860	1.000000	1.000000	0.257037	0.205813	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA-directed RNA polymerase I subunit RPA43 OS=Homo sapiens GN=TWISTNB PE=1 SV=1	RPA43_HUMAN	RPA43_HUMAN	DNA-directed RNA polymerase I subunit RPA43 OS=Homo sapiens GN=TWISTNB PE=1 SV=1	98.800000	0.002630	37414.900000	1.000000	1.000000	2.000000	Spectrum25165 scans:4446,	AAGCSEAPR	A[+42]AGC[+57]SEAPR	M	P	99.700000	73.000000	40.700000	55.000000	Acetyl (+42), Carbamidomethyl (+57)	959.410000	2.000000	0.000330	0.340000	2.000000	10.000000	0.605300	1.532933	3.588500	0.703250	0.480750	0.686900	NaN	NaN	NaN	0.760714	2.224006	6.239784	0.818089	0.652794	1.026833	NaN	NaN	NaN	0.789402	1.438400	0.023125	0.318243	0.147780	1.000000	0.252547	0.203102	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	H0YGR4_HUMAN	H0YGR4_HUMAN	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	100.000000	0.014500	22099.800000	3.000000	8.000000	11.000000	Spectrum37886 scans:7575,	AAGESMAQR	A[+42]AGESMAQR	M	M	99.600000	65.400000	43.700000	35.600000	Acetyl (+42), Label:13C(6) (+6)	967.450000	2.000000	0.000760	0.790000	17.000000	25.000000	0.561133	1.204300	1.674133	0.580350	0.323800	0.618000	NaN	NaN	NaN	0.705207	1.747219	2.911030	0.675120	0.439677	0.923836	NaN	NaN	NaN	0.690164	1.093448	0.013874	0.343057	0.088500	1.000000	0.251997	0.200810	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	H0YGR4_HUMAN	H0YGR4_HUMAN	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	100.000000	0.014500	22099.800000	3.000000	8.000000	11.000000	Spectrum37902 scans:7594,	AAGESMAQR	A[+42]AGESMAQR	M	M	99.700000	63.500000	42.700000	32.500000	Acetyl (+42)	961.430000	2.000000	0.000490	0.510000	17.000000	25.000000	0.561133	1.204300	1.674133	0.580350	0.323800	0.618000	NaN	NaN	NaN	0.705207	1.747219	2.911030	0.675120	0.439677	0.923836	NaN	NaN	NaN	0.690164	1.093448	0.013874	0.343057	0.087854	1.000000	0.251723	0.200636	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	H0YGR4_HUMAN	H0YGR4_HUMAN	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	100.000000	0.014500	22099.800000	3.000000	8.000000	11.000000	Spectrum34126 scans:3279,	AAGESMAQR	A[+42]AGESMAQR	M	M	99.700000	57.600000	41.300000	39.600000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10)	987.430000	2.000000	-0.000053	-0.054000	17.000000	25.000000	0.561133	1.204300	1.674133	0.580350	0.323800	0.618000	NaN	NaN	NaN	0.705207	1.747219	2.911030	0.675120	0.439677	0.923836	NaN	NaN	NaN	0.690164	1.093448	0.013874	0.343057	0.087217	1.000000	0.250904	0.200462	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	H0YGR4_HUMAN	H0YGR4_HUMAN	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	100.000000	0.014500	22099.800000	3.000000	8.000000	11.000000	Spectrum34109 scans:3260,	AAGESMAQR	A[+42]AGESMAQR	M	M	99.700000	76.000000	42.600000	55.800000	Acetyl (+42), Oxidation (+16), Label:13C(6) (+6)	983.440000	2.000000	-0.000390	-0.400000	17.000000	25.000000	0.561133	1.204300	1.674133	0.580350	0.323800	0.618000	NaN	NaN	NaN	0.705207	1.747219	2.911030	0.675120	0.439677	0.923836	NaN	NaN	NaN	0.690164	1.093448	0.013874	0.343057	0.086746	1.000000	0.250632	0.198569	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	H0YGR4_HUMAN	H0YGR4_HUMAN	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	100.000000	0.014500	22099.800000	3.000000	8.000000	11.000000	Spectrum34110 scans:3261,	AAGESMAQR	A[+42]AGESMAQR	M	M	99.700000	75.700000	40.800000	46.300000	Acetyl (+42), Oxidation (+16)	977.420000	2.000000	-0.000580	-0.600000	17.000000	25.000000	0.561133	1.204300	1.674133	0.580350	0.323800	0.618000	NaN	NaN	NaN	0.705207	1.747219	2.911030	0.675120	0.439677	0.923836	NaN	NaN	NaN	0.690164	1.093448	0.013874	0.343057	0.086590	1.000000	0.249551	0.197383	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1	EXOS8_HUMAN	EXOS8_HUMAN	Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1	98.900000	0.007510	30022.000000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.30913.30913.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30913"	AAGFKTVEPLEYYR	A[+42]AGFKTVEPLEYYR	M	R	99.700000	61.800000	55.500000	55.300000	Acetyl (+42), Dimethyl (+28)	1712.880000	2.000000	-0.000440	-0.260000	2.000000	15.000000	7.561000	5.054600	9.809700	55.596900	35.389400	0.636850	NaN	NaN	NaN	9.502325	7.333301	17.057381	64.675760	48.054043	0.952014	NaN	NaN	NaN	37.089042	27.693672	0.016242	0.097181	0.100644	0.559233	0.246887	0.196045	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1	EXOS8_HUMAN	EXOS8_HUMAN	Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1	98.900000	0.007510	30022.000000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.30905.30905.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30905"	AAGFKTVEPLEYYR	A[+42]AGFKTVEPLEYYR	M	R	99.700000	79.300000	56.000000	69.100000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1730.900000	2.000000	-0.001800	-1.000000	2.000000	15.000000	7.561000	5.054600	9.809700	55.596900	35.389400	0.636850	NaN	NaN	NaN	9.502325	7.333301	17.057381	64.675760	48.054043	0.952014	NaN	NaN	NaN	37.089042	27.693672	0.016242	0.097181	0.100464	0.558308	0.246624	0.195879	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Muskelin OS=Homo sapiens GN=MKLN1 PE=4 SV=1	F8WEY7_HUMAN	F8WEY7_HUMAN	Muskelin OS=Homo sapiens GN=MKLN1 PE=4 SV=1	98.800000	0.003950	19490.200000	1.000000	2.000000	3.000000	Spectrum17861 scans:9140,	AAGGAVAAAPECR	A[+42]AGGAVAAAPEC[+57]R	M	L	99.700000	101.000000	45.900000	76.100000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1251.590000	2.000000	-0.000260	-0.210000	2.000000	14.000000	8.059433	1.497100	0.305100	0.670550	0.354250	0.550700	NaN	NaN	NaN	10.128734	2.172019	0.530516	0.780049	0.481024	0.823230	NaN	NaN	NaN	5.454392	1.326521	0.450441	0.361251	1.000000	1.000000	0.246361	0.195713	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Muskelin OS=Homo sapiens GN=MKLN1 PE=4 SV=1	F8WEY7_HUMAN	F8WEY7_HUMAN	Muskelin OS=Homo sapiens GN=MKLN1 PE=4 SV=1	98.900000	0.008960	19490.200000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.9790.9790.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9790"	AAGGAVAAAPECR	A[+42]AGGAVAAAPEC[+57]R	M	L	99.700000	79.400000	49.100000	69.800000	Acetyl (+42), Carbamidomethyl (+57)	1241.580000	2.000000	-0.000450	-0.360000	2.000000	14.000000	8.059433	1.497100	0.305100	0.670550	0.354250	0.550700	NaN	NaN	NaN	10.128734	2.172019	0.530516	0.780049	0.481024	0.823230	NaN	NaN	NaN	5.454392	1.326521	0.450441	0.361251	1.000000	1.000000	0.245838	0.195383	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2	sp|P30566|PUR8_HUMAN	PUR8_HUMAN	Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2	100.000000	0.011900	54872.500000	1.000000	3.000000	9.000000	Spectrum25812 scans:5521,	AAGGDHGSPDSYR	A[+42]AGGDHGSPDSYR	M	S	99.700000	83.500000	39.500000	75.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1340.560000	2.000000	-0.000720	-0.540000	2.000000	14.000000	0.553167	0.292600	0.529600	0.685900	0.475250	0.692900	0.862957	1.876186	2.069557	0.695195	0.424509	0.920883	0.797906	0.645326	1.035802	0.577171	0.799050	0.991737	0.690091	0.622961	0.008432	0.029122	0.051421	0.163250	0.016744	0.013310	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2	sp|P30566|PUR8_HUMAN	PUR8_HUMAN	Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2	100.000000	0.011900	54872.500000	1.000000	3.000000	9.000000	Spectrum25810 scans:5518,	AAGGDHGSPDSYR	A[+42]AGGDHGSPDSYR	M	S	99.700000	85.000000	41.000000	74.100000	Acetyl (+42), Label:13C(6) (+6)	1336.570000	2.000000	-0.000600	-0.450000	2.000000	14.000000	0.553167	0.292600	0.529600	0.685900	0.475250	0.692900	0.862957	1.876186	2.069557	0.695195	0.424509	0.920883	0.797906	0.645326	1.035802	0.577171	0.799050	0.991737	0.690091	0.622961	0.008432	0.029122	0.050533	0.162987	0.016585	0.013299	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2	sp|P30566|PUR8_HUMAN	PUR8_HUMAN	Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2	100.000000	0.011900	54872.500000	1.000000	3.000000	9.000000	Spectrum25809 scans:5517,	AAGGDHGSPDSYR	A[+42]AGGDHGSPDSYR	M	S	99.700000	92.100000	38.700000	74.500000	Acetyl (+42)	1330.550000	2.000000	-0.000370	-0.280000	2.000000	14.000000	0.553167	0.292600	0.529600	0.685900	0.475250	0.692900	0.862957	1.876186	2.069557	0.695195	0.424509	0.920883	0.797906	0.645326	1.035802	0.577171	0.799050	0.991737	0.690091	0.622961	0.008432	0.029122	0.050273	0.160145	0.016447	0.013254	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone H1.5 OS=Homo sapiens GN=HIST1H1B PE=1 SV=3	H15_HUMAN	H15_HUMAN	Histone H1.5 OS=Homo sapiens GN=HIST1H1B PE=1 SV=3	100.000000	0.006590	22563.700000	4.000000	5.000000	5.000000	Spectrum14967 scans:3856,	AAGGYDVEKNNSR	A[+28]AGGYDVEKNNSR	L	I	99.700000	54.500000	50.300000	35.400000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1445.750000	3.000000	-0.000150	-0.110000	70.000000	82.000000	NaN	1.137933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.650933	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.650933	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1	SF3B4_HUMAN	SF3B4_HUMAN	Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1	99.400000	0.052700	44368.500000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction2A.8426.8426.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8426"	AAGPISER	A[+42]AGPISER	M	N	99.000000	74.300000	50.300000	35.000000	Acetyl (+42), Label:13C(6) (+6)	847.450000	2.000000	0.000150	0.170000	2.000000	9.000000	0.525300	0.302467	0.587633	0.712350	0.518850	0.728600	0.471529	0.540414	1.499571	0.660173	0.438824	1.021793	0.828675	0.704528	1.089170	0.315372	0.230157	0.718599	0.601407	0.457837	0.057687	0.079341	0.342766	0.434250	0.016244	0.012897	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1	SF3B4_HUMAN	SF3B4_HUMAN	Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1	99.900000	0.014500	44368.500000	1.000000	3.000000	11.000000	Spectrum22855 scans:6725,	AAGPISER	A[+42]AGPISER	M	N	99.000000	63.300000	46.100000	23.000000	Acetyl (+42)	841.430000	2.000000	0.000110	0.130000	2.000000	9.000000	0.525300	0.302467	0.587633	0.712350	0.518850	0.728600	0.471529	0.540414	1.499571	0.660173	0.438824	1.021793	0.828675	0.704528	1.089170	0.315372	0.230157	0.718599	0.601407	0.457837	0.057687	0.079341	0.341014	0.433566	0.016194	0.012771	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1	SF3B4_HUMAN	SF3B4_HUMAN	Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1	96.100000	0.015000	44368.500000	1.000000	3.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.9625.9625.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9625"	AAGPISER	A[+42]AGPISER	M	N	99.000000	53.400000	49.700000	22.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	851.440000	2.000000	0.000310	0.360000	2.000000	9.000000	0.525300	0.302467	0.587633	0.712350	0.518850	0.728600	0.471529	0.540414	1.499571	0.660173	0.438824	1.021793	0.828675	0.704528	1.089170	0.315372	0.230157	0.718599	0.601407	0.457837	0.057687	0.079341	0.331965	0.432884	0.015980	0.012761	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Nucleoplasmin-3 OS=Homo sapiens GN=NPM3 PE=1 SV=3	NPM3_HUMAN	NPM3_HUMAN	Nucleoplasmin-3 OS=Homo sapiens GN=NPM3 PE=1 SV=3	100.000000	0.027500	19325.100000	2.000000	3.000000	11.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37803.37803.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37803"	AAGTAAALAF	A[+42]AGTAAALAF	M	L	99.500000	51.700000	50.000000	42.500000	Acetyl (+42)	904.470000	2.000000	0.000019	0.021000	2.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleoplasmin-3 OS=Homo sapiens GN=NPM3 PE=1 SV=3	NPM3_HUMAN	NPM3_HUMAN	Nucleoplasmin-3 OS=Homo sapiens GN=NPM3 PE=1 SV=3	100.000000	0.007900	19325.100000	2.000000	4.000000	6.000000	Spectrum71019 scans:46449,	AAGTAAALAFLSQESR	A[+42]AGTAAALAFLSQESR	M	T	99.700000	92.100000	51.200000	70.700000	Acetyl (+42), Label:13C(6) (+6)	1610.830000	2.000000	-0.002600	-1.600000	2.000000	17.000000	0.448900	0.252233	0.561767	0.943000	0.372450	0.395350	NaN	NaN	NaN	0.564157	0.365944	0.976816	1.096990	0.505737	0.591001	NaN	NaN	NaN	0.830574	0.435841	0.197603	0.101233	1.000000	0.550595	0.233199	0.185810	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Nucleoplasmin-3 OS=Homo sapiens GN=NPM3 PE=1 SV=3	NPM3_HUMAN	NPM3_HUMAN	Nucleoplasmin-3 OS=Homo sapiens GN=NPM3 PE=1 SV=3	100.000000	0.027500	19325.100000	2.000000	3.000000	11.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.43922.43922.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43922"	AAGTAAALAFLSQESR	A[+42]AGTAAALAFLSQESR	M	T	99.700000	101.000000	54.800000	89.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1614.820000	2.000000	-0.000890	-0.550000	2.000000	17.000000	0.448900	0.252233	0.561767	0.943000	0.372450	0.395350	NaN	NaN	NaN	0.564157	0.365944	0.976816	1.096990	0.505737	0.591001	NaN	NaN	NaN	0.830574	0.435841	0.197603	0.101233	1.000000	0.549734	0.232964	0.184036	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Nucleoplasmin-3 OS=Homo sapiens GN=NPM3 PE=1 SV=3	NPM3_HUMAN	NPM3_HUMAN	Nucleoplasmin-3 OS=Homo sapiens GN=NPM3 PE=1 SV=3	100.000000	0.027500	19325.100000	2.000000	3.000000	11.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.43919.43919.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43919"	AAGTAAALAFLSQESR	A[+42]AGTAAALAFLSQESR	M	T	99.700000	121.000000	54.600000	102.000000	Acetyl (+42)	1604.820000	2.000000	-0.000490	-0.310000	2.000000	17.000000	0.448900	0.252233	0.561767	0.943000	0.372450	0.395350	NaN	NaN	NaN	0.564157	0.365944	0.976816	1.096990	0.505737	0.591001	NaN	NaN	NaN	0.830574	0.435841	0.197603	0.101233	1.000000	0.546314	0.231333	0.183890	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	EF1G_HUMAN	EF1G_HUMAN	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	100.000000	0.017100	50101.400000	6.000000	11.000000	13.000000	Spectrum21153 scans:24150,	AAGTLYTYPENWR	A[+42]AGTLYTYPENWR	M	A	99.700000	71.000000	48.200000	48.100000	Acetyl (+42), Label:13C(6) (+6)	1588.760000	2.000000	-0.000940	-0.590000	2.000000	14.000000	0.419367	0.212767	0.507367	0.872750	0.447450	0.513450	0.980386	13.435714	8.299414	0.527041	0.308686	0.882223	1.015268	0.607577	0.767546	0.655711	5.722143	3.977101	0.732673	2.212802	0.037537	0.334901	0.210088	1.000000	0.015494	0.012265	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	EF1G_HUMAN	EF1G_HUMAN	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	100.000000	0.017100	50101.400000	6.000000	11.000000	13.000000	Spectrum21152 scans:24149,	AAGTLYTYPENWR	A[+42]AGTLYTYPENWR	M	A	99.700000	82.400000	47.300000	62.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1592.750000	2.000000	-0.000058	-0.036000	2.000000	14.000000	0.419367	0.212767	0.507367	0.872750	0.447450	0.513450	0.980386	13.435714	8.299414	0.527041	0.308686	0.882223	1.015268	0.607577	0.767546	0.655711	5.722143	3.977101	0.732673	2.212802	0.037537	0.334901	0.206426	1.000000	0.015479	0.012255	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	EF1G_HUMAN	EF1G_HUMAN	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	100.000000	0.047600	50101.400000	3.000000	5.000000	19.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33300.33300.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33300"	AAGTLYTYPENWR	A[+42]AGTLYTYPENWR	M	A	99.700000	83.700000	50.700000	76.300000	Acetyl (+42)	1582.740000	2.000000	-0.000500	-0.320000	2.000000	14.000000	0.419367	0.212767	0.507367	0.872750	0.447450	0.513450	0.980386	13.435714	8.299414	0.527041	0.308686	0.882223	1.015268	0.607577	0.767546	0.655711	5.722143	3.977101	0.732673	2.212802	0.037537	0.334901	0.206099	1.000000	0.015254	0.011931	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease H2 subunit B OS=Homo sapiens GN=RNASEH2B PE=1 SV=1	sp|Q5TBB1-2|RNH2B_HUMAN	RNH2B_HUMAN	Isoform 2 of Ribonuclease H2 subunit B OS=Homo sapiens GN=RNASEH2B	100.000000	0.011900	0.000000	2.000000	3.000000	9.000000	Spectrum27737 scans:9123,	AAGVDCGDGVGAR	A[+42]AGVDC[+57]GDGVGAR	M	Q	99.700000	84.600000	41.400000	48.700000	Acetyl (+42), Carbamidomethyl (+57)	1245.540000	2.000000	-0.000370	-0.300000	0.000000	0.000000	0.614667	0.153933	0.251067	0.690800	0.132950	0.192450	1.394743	NaN	NaN	0.772485	0.223329	0.436562	0.803606	0.180528	0.287690	0.932845	NaN	NaN	0.836312	0.201929	0.003429	0.067218	0.018765	0.357741	0.015122	0.174855	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease H2 subunit B OS=Homo sapiens GN=RNASEH2B PE=1 SV=1	sp|Q5TBB1-2|RNH2B_HUMAN	RNH2B_HUMAN	Isoform 2 of Ribonuclease H2 subunit B OS=Homo sapiens GN=RNASEH2B	100.000000	0.011900	0.000000	2.000000	3.000000	9.000000	Spectrum27736 scans:9121,	AAGVDCGDGVGAR	A[+42]AGVDC[+57]GDGVGAR	M	Q	99.700000	86.900000	41.900000	64.800000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1255.550000	2.000000	-0.000580	-0.460000	0.000000	0.000000	0.614667	0.153933	0.251067	0.690800	0.132950	0.192450	1.394743	NaN	NaN	0.772485	0.223329	0.436562	0.803606	0.180528	0.287690	0.932845	NaN	NaN	0.836312	0.201929	0.003429	0.067218	0.018735	0.357193	0.015079	0.174723	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Alpha- and gamma-adaptin-binding protein p34 OS=Homo sapiens GN=AAGAB PE=1 SV=1	AAGAB_HUMAN	AAGAB_HUMAN	Alpha- and gamma-adaptin-binding protein p34 OS=Homo sapiens GN=AAGAB PE=1 SV=1	98.900000	0.002500	34575.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.39513.39513.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39513"	AAGVPCALVTSCSSVFSGDQLVQH	A[+42]AGVPC[+57]ALVTSC[+57]SSVFSGDQLVQH	M	I	99.700000	67.400000	54.200000	65.800000	Acetyl (+42), Carbamidomethyl (+57), Carbamidomethyl (+57)	2531.190000	2.000000	0.006900	2.700000	2.000000	25.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	N-acetyl-D-glucosamine kinase (Fragment) OS=Homo sapiens GN=NAGK PE=4 SV=1	H7C3G9_HUMAN	H7C3G9_HUMAN	N-acetyl-D-glucosamine kinase (Fragment) OS=Homo sapiens GN=NAGK PE=4 SV=1	99.900000	0.007900	38990.500000	1.000000	3.000000	6.000000	Spectrum30184 scans:15915,	AAIYGGVEGGGTR	A[+42]AIYGGVEGGGTR	M	S	99.700000	69.200000	48.300000	43.900000	Acetyl (+42), Label:13C(6) (+6)	1254.630000	2.000000	-0.000920	-0.730000	24.000000	36.000000	3.259300	1.919667	0.431233	0.725050	0.444450	0.613850	1.337957	1.148471	1.931471	4.096142	2.785086	0.749841	0.843449	0.603503	0.917632	0.894865	0.489123	0.925566	1.944819	1.292571	0.212363	0.225703	1.000000	1.000000	0.015036	0.011833	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	N-acetyl-D-glucosamine kinase (Fragment) OS=Homo sapiens GN=NAGK PE=4 SV=1	H7C3G9_HUMAN	H7C3G9_HUMAN	N-acetyl-D-glucosamine kinase (Fragment) OS=Homo sapiens GN=NAGK PE=4 SV=1	99.900000	0.007900	38990.500000	1.000000	3.000000	6.000000	Spectrum30183 scans:15913,	AAIYGGVEGGGTR	A[+42]AIYGGVEGGGTR	M	S	99.700000	74.800000	47.800000	40.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1258.620000	2.000000	-0.000180	-0.140000	24.000000	36.000000	3.259300	1.919667	0.431233	0.725050	0.444450	0.613850	1.337957	1.148471	1.931471	4.096142	2.785086	0.749841	0.843449	0.603503	0.917632	0.894865	0.489123	0.925566	1.944819	1.292571	0.212363	0.225703	1.000000	1.000000	0.014894	0.011824	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	N-acetyl-D-glucosamine kinase (Fragment) OS=Homo sapiens GN=NAGK PE=4 SV=1	H7C3G9_HUMAN	H7C3G9_HUMAN	N-acetyl-D-glucosamine kinase (Fragment) OS=Homo sapiens GN=NAGK PE=4 SV=1	98.900000	0.005010	38990.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.19837.19837.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19837"	AAIYGGVEGGGTR	A[+42]AIYGGVEGGGTR	M	S	99.700000	61.000000	50.900000	37.800000	Acetyl (+42)	1248.610000	2.000000	-0.000760	-0.610000	24.000000	36.000000	3.259300	1.919667	0.431233	0.725050	0.444450	0.613850	1.337957	1.148471	1.931471	4.096142	2.785086	0.749841	0.843449	0.603503	0.917632	0.894865	0.489123	0.925566	1.944819	1.292571	0.212363	0.225703	1.000000	1.000000	0.014880	0.011736	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Vacuolar protein sorting-associated protein VTA1 homolog OS=Homo sapiens GN=VTA1 PE=1 SV=1	VTA1_HUMAN	VTA1_HUMAN	Vacuolar protein sorting-associated protein VTA1 homolog OS=Homo sapiens GN=VTA1 PE=1 SV=1	99.900000	0.010800	33861.900000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.28972.28972.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28972"	AALAPLPPLPAQFK	A[+42]ALAPLPPLPAQFK	M	S	99.700000	71.500000	55.700000	23.100000	Acetyl (+42), Dimethyl (+28)	1502.880000	2.000000	-0.002400	-1.600000	2.000000	15.000000	0.647200	NaN	NaN	37.284950	NaN	NaN	NaN	NaN	NaN	0.813372	NaN	NaN	43.373506	NaN	NaN	NaN	NaN	NaN	22.093439	NaN	0.448333	NaN	1.000000	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1	PSB10_HUMAN	PSB10_HUMAN	Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1	100.000000	0.005010	28918.000000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.18682.18682.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18682"	AALAVLEDR	A[+28]ALAVLEDR	D	F	99.700000	70.400000	52.500000	44.300000	Dimethyl (+28)	984.570000	2.000000	0.005000	5.100000	172.000000	180.000000	0.426133	0.303600	0.918633	0.734300	0.334300	0.454750	NaN	NaN	NaN	0.535545	0.440468	1.597345	0.854210	0.453934	0.679797	NaN	NaN	NaN	0.694877	0.447201	0.143494	0.009584	0.768399	0.050238	0.217828	0.169973	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1	sp|P47897-2|SYQ_HUMAN	SYQ_HUMAN	Isoform 2 of Glutamine--tRNA ligase OS=Homo sapiens GN=QARS	100.000000	0.005760	0.000000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.46981.46981.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46981"	AALDSLSLFTSLGLSEQKAR	A[+42]ALDSLSLFTSLGLSEQKAR	M	E	99.700000	96.500000	59.200000	87.100000	Acetyl (+42), Dimethyl (+28)	2176.170000	2.000000	0.000320	0.150000	0.000000	0.000000	12.077200	2.542600	0.325900	335.680350	152.121850	0.441050	NaN	NaN	NaN	15.178082	3.688848	0.566684	390.496263	206.561002	0.659317	NaN	NaN	NaN	202.837173	105.124925	0.000000	0.275019	0.000000	1.000000	0.217419	0.169848	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	General transcription factor IIF subunit 1 OS=Homo sapiens GN=GTF2F1 PE=1 SV=2	T2FA_HUMAN	T2FA_HUMAN	General transcription factor IIF subunit 1 OS=Homo sapiens GN=GTF2F1 PE=1 SV=2	99.800000	0.010500	58223.900000	1.000000	6.000000	8.000000	Spectrum31671 scans:22148,	AALGPSSQNVTEYVVR	A[+42]ALGPSSQNVTEYVVR	M	V	99.700000	115.000000	51.300000	87.300000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1741.890000	2.000000	-0.001700	-0.970000	2.000000	17.000000	0.734533	0.377800	0.530633	0.921200	0.296000	0.321750	NaN	NaN	NaN	0.923128	0.548119	0.922680	1.071630	0.401928	0.480978	NaN	NaN	NaN	0.997379	0.475023	0.047306	0.097199	0.251384	0.507952	0.216402	0.169724	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	General transcription factor IIF subunit 1 OS=Homo sapiens GN=GTF2F1 PE=1 SV=2	T2FA_HUMAN	T2FA_HUMAN	General transcription factor IIF subunit 1 OS=Homo sapiens GN=GTF2F1 PE=1 SV=2	98.900000	0.012500	58223.900000	1.000000	3.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.29499.29499.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29499"	AALGPSSQNVTEYVVR	A[+42]ALGPSSQNVTEYVVR	M	V	99.700000	108.000000	55.300000	95.300000	Acetyl (+42)	1731.880000	2.000000	-0.000340	-0.200000	2.000000	17.000000	0.734533	0.377800	0.530633	0.921200	0.296000	0.321750	NaN	NaN	NaN	0.923128	0.548119	0.922680	1.071630	0.401928	0.480978	NaN	NaN	NaN	0.997379	0.475023	0.047306	0.097199	0.250999	0.505668	0.215595	0.166907	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	General transcription factor IIF subunit 1 OS=Homo sapiens GN=GTF2F1 PE=1 SV=2	T2FA_HUMAN	T2FA_HUMAN	General transcription factor IIF subunit 1 OS=Homo sapiens GN=GTF2F1 PE=1 SV=2	99.400000	0.075400	58223.900000	1.000000	5.000000	7.000000	Nsco_Tails_biological_replicate_3_fraction5A.22171.22171.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22171"	AALGPSSQNVTEYVVR	A[+42]ALGPSSQNVTEYVVR	M	V	99.700000	92.900000	56.100000	81.000000	Acetyl (+42), Label:13C(6) (+6)	1737.910000	2.000000	0.006200	3.600000	2.000000	17.000000	0.734533	0.377800	0.530633	0.921200	0.296000	0.321750	NaN	NaN	NaN	0.923128	0.548119	0.922680	1.071630	0.401928	0.480978	NaN	NaN	NaN	0.997379	0.475023	0.047306	0.097199	0.250616	0.496000	0.215394	0.166787	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1	RS25_HUMAN	RS25_HUMAN	40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1	97.400000	0.005760	13725.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.35081.35081.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35081"	AALQELLSKGL	A[+28]ALQELLSKGL	R	I	99.700000	68.700000	52.900000	34.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1205.750000	2.000000	-0.000025	-0.021000	86.000000	96.000000	33.170533	12.749633	0.386000	NaN	NaN	NaN	NaN	NaN	NaN	41.687236	18.497389	0.671188	NaN	NaN	NaN	NaN	NaN	NaN	41.687236	18.497389	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.042100	52861.700000	8.000000	16.000000	32.000000	Spectrum68806 scans:43580,	AALTTLFK	A[+42]ALTTLFK	M	Y	99.000000	53.500000	47.300000	23.900000	Acetyl (+42), Dimethyl:2H(4) (+32)	937.580000	2.000000	-0.000220	-0.230000	2.000000	9.000000	NaN	NaN	0.018900	23.831450	16.073500	0.610500	NaN	NaN	NaN	NaN	NaN	0.032864	27.723077	21.825650	0.912624	NaN	NaN	NaN	27.723077	21.825650	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.042100	52861.700000	8.000000	16.000000	32.000000	Spectrum68830 scans:43609,	AALTTLFK	A[+42]ALTTLFK	M	Y	99.000000	65.500000	47.400000	40.600000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	941.570000	2.000000	-0.000290	-0.300000	2.000000	9.000000	NaN	NaN	0.018900	23.831450	16.073500	0.610500	NaN	NaN	NaN	NaN	NaN	0.032864	27.723077	21.825650	0.912624	NaN	NaN	NaN	27.723077	21.825650	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.057800	52861.700000	7.000000	13.000000	25.000000	Nsco_Tails_biological_replicate_3_fraction6A.43569.43569.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43569"	AALTTLFK	A[+42]ALTTLFK	M	Y	99.000000	61.400000	51.800000	49.000000	Acetyl (+42), Dimethyl (+28)	933.550000	2.000000	0.000240	0.260000	2.000000	9.000000	NaN	NaN	0.018900	23.831450	16.073500	0.610500	NaN	NaN	NaN	NaN	NaN	0.032864	27.723077	21.825650	0.912624	NaN	NaN	NaN	27.723077	21.825650	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.042100	52861.700000	8.000000	16.000000	32.000000	Spectrum72549 scans:48916,	AALTTLFKY	A[+42]ALTTLFKY	M	I	99.700000	77.200000	49.000000	36.900000	Acetyl (+42), Dimethyl:2H(4) (+32)	1100.640000	2.000000	-0.000097	-0.088000	2.000000	10.000000	6.527500	4.271300	0.707600	4.908100	5.748250	1.225650	NaN	NaN	NaN	8.203469	6.196876	1.230395	5.709583	7.805350	1.832200	NaN	NaN	NaN	6.956526	7.001113	0.112914	0.072811	0.576192	0.360935	0.206732	0.162911	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.057800	52861.700000	7.000000	13.000000	25.000000	Nsco_Tails_biological_replicate_3_fraction6A.48904.48904.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=48904"	AALTTLFKY	A[+42]ALTTLFKY	M	I	98.800000	56.000000	53.000000	37.000000	Acetyl (+42), Dimethyl (+28)	1096.620000	2.000000	0.000190	0.170000	2.000000	10.000000	6.527500	4.271300	0.707600	4.908100	5.748250	1.225650	NaN	NaN	NaN	8.203469	6.196876	1.230395	5.709583	7.805350	1.832200	NaN	NaN	NaN	6.956526	7.001113	0.112914	0.072811	0.573661	0.356857	0.206363	0.162796	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.057800	52861.700000	7.000000	13.000000	25.000000	Nsco_Tails_biological_replicate_3_fraction6A.48909.48909.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=48909"	AALTTLFKY	A[+42]ALTTLFKY	M	I	99.700000	77.400000	53.300000	51.700000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1104.630000	2.000000	0.000190	0.170000	2.000000	10.000000	6.527500	4.271300	0.707600	4.908100	5.748250	1.225650	NaN	NaN	NaN	8.203469	6.196876	1.230395	5.709583	7.805350	1.832200	NaN	NaN	NaN	6.956526	7.001113	0.112914	0.072811	0.565383	0.356353	0.205630	0.161320	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.028800	52861.700000	3.000000	5.000000	10.000000	Nsco_Tails_biological_replicate1_apoptosis.48447.48447.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=48447"	AALTTLFKYIDENQDR	A[+42]ALTTLFKYIDENQDR	M	Y	99.700000	92.200000	57.200000	80.800000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1985.030000	2.000000	0.002700	1.400000	2.000000	17.000000	77.504567	36.307233	0.456167	381.336700	244.562200	0.645800	NaN	NaN	NaN	97.404256	52.675162	0.793195	443.608201	332.082558	0.965394	NaN	NaN	NaN	270.506229	192.378860	0.000000	0.000000	0.000000	0.000000	0.205265	0.160872	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.017900	52861.700000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.41564.41564.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41564"	AALTTLFKYIDENQDR	A[+42]ALTTLFKYIDENQDR	M	Y	99.700000	79.100000	57.800000	66.800000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1977.040000	2.000000	-0.001200	-0.600000	2.000000	17.000000	77.504567	36.307233	0.456167	381.336700	244.562200	0.645800	NaN	NaN	NaN	97.404256	52.675162	0.793195	443.608201	332.082558	0.965394	NaN	NaN	NaN	270.506229	192.378860	0.000000	0.000000	0.000000	0.000000	0.204720	0.159982	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.057800	52861.700000	7.000000	13.000000	25.000000	Nsco_Tails_biological_replicate_3_fraction6A.52316.52316.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=52316"	AALTTLFKYIDENQDR	A[+42]ALTTLFKYIDENQDR	M	Y	99.700000	84.700000	56.500000	70.000000	Acetyl (+42), Dimethyl (+28)	1967.000000	2.000000	-0.001900	-0.960000	2.000000	17.000000	77.504567	36.307233	0.456167	381.336700	244.562200	0.645800	NaN	NaN	NaN	97.404256	52.675162	0.793195	443.608201	332.082558	0.965394	NaN	NaN	NaN	270.506229	192.378860	0.000000	0.000000	0.000000	0.000000	0.204539	0.159430	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	PYR1_HUMAN	PYR1_HUMAN	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	100.000000	0.021100	242964.500000	6.000000	12.000000	16.000000	Spectrum32239 scans:28104,	AALVLEDGSVLR	A[+42]ALVLEDGSVLR	M	G	99.500000	60.900000	50.400000	35.000000	Acetyl (+42), Label:13C(6) (+6)	1289.730000	2.000000	-0.001100	-0.880000	2.000000	13.000000	0.630667	0.087400	0.140533	0.667300	0.146850	0.220200	765.782957	3.142229	1.178043	0.792594	0.126801	0.244363	0.776269	0.199403	0.329173	512.178014	1.338245	0.564521	171.248959	0.554816	0.336144	0.292857	1.000000	1.000000	0.013897	0.010840	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	PYR1_HUMAN	PYR1_HUMAN	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	100.000000	0.021100	242964.500000	6.000000	12.000000	16.000000	Spectrum21200 scans:27524,	AALVLEDGSVLR	A[+42]ALVLEDGSVLR	M	G	99.700000	119.000000	50.600000	82.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1293.720000	2.000000	-0.000260	-0.200000	2.000000	13.000000	0.630667	0.087400	0.140533	0.667300	0.146850	0.220200	765.782957	3.142229	1.178043	0.792594	0.126801	0.244363	0.776269	0.199403	0.329173	512.178014	1.338245	0.564521	171.248959	0.554816	0.336144	0.292857	1.000000	1.000000	0.013799	0.010833	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	PYR1_HUMAN	PYR1_HUMAN	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	100.000000	0.004670	242964.500000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.63670.63670.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=63670"	AALVLEDGSVLR	A[+42]ALVLEDGSVLR	M	G	99.700000	75.500000	54.500000	44.700000	Acetyl (+42)	1283.710000	2.000000	0.000310	0.240000	2.000000	13.000000	0.630667	0.087400	0.140533	0.667300	0.146850	0.220200	765.782957	3.142229	1.178043	0.792594	0.126801	0.244363	0.776269	0.199403	0.329173	512.178014	1.338245	0.564521	171.248959	0.554816	0.336144	0.292857	1.000000	1.000000	0.013787	0.010759	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Diphthamide biosynthesis protein 1 OS=Homo sapiens GN=DPH1 PE=1 SV=2	sp|Q9BZG8|DPH1_HUMAN	DPH1_HUMAN	Diphthamide biosynthesis protein 1 OS=Homo sapiens GN=DPH1 PE=1 SV=2	99.400000	0.005270	48787.600000	1.000000	2.000000	4.000000	Spectrum30758 scans:18075,	AALVVSGAAEQGGR	A[+42]ALVVSGAAEQGGR	M	D	99.300000	69.200000	49.700000	40.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1336.690000	2.000000	-0.003700	-2.700000	7.000000	20.000000	0.851033	0.335767	0.489000	0.630200	0.306450	0.474850	NaN	NaN	NaN	1.069540	0.487136	0.850287	0.733110	0.416118	0.709844	NaN	NaN	NaN	0.901325	0.451627	0.117461	0.049951	0.555302	0.221651	0.200985	0.157691	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Diphthamide biosynthesis protein 1 OS=Homo sapiens GN=DPH1 PE=1 SV=2	sp|Q9BZG8|DPH1_HUMAN	DPH1_HUMAN	Diphthamide biosynthesis protein 1 OS=Homo sapiens GN=DPH1 PE=1 SV=2	99.400000	0.005270	48787.600000	1.000000	2.000000	4.000000	Spectrum30760 scans:18080,	AALVVSGAAEQGGR	A[+42]ALVVSGAAEQGGR	M	D	99.700000	84.000000	49.800000	44.700000	Acetyl (+42)	1326.690000	2.000000	0.001400	1.100000	7.000000	20.000000	0.851033	0.335767	0.489000	0.630200	0.306450	0.474850	NaN	NaN	NaN	1.069540	0.487136	0.850287	0.733110	0.416118	0.709844	NaN	NaN	NaN	0.901325	0.451627	0.117461	0.049951	0.546369	0.221368	0.199770	0.157584	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=4 SV=1	LSM5_HUMAN	LSM5_HUMAN	U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=1 SV=3	97.400000	0.008640	9919.700000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.42247.42247.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42247"	AANATTNPSQLLPLELVDKCIGSR	A[+42]ANATTNPSQLLPLELVDKC[+57]IGSR	M	I	98.700000	63.100000	61.200000	59.200000	Acetyl (+42), Dimethyl:2H(4) (+32), Carbamidomethyl (+57), Label:13C(6) (+6)	2647.430000	2.000000	0.003100	1.200000	2.000000	25.000000	15.325300	8.645133	0.642100	100.856500	60.145700	0.597350	NaN	NaN	NaN	19.260148	12.542509	1.116501	117.326160	81.669767	0.892967	NaN	NaN	NaN	68.293154	47.106138	0.000000	0.000000	0.000000	0.000000	0.199597	0.157477	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=4 SV=1	B8ZZF8_HUMAN	B8ZZF8_HUMAN	U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=4 SV=1	98.000000	0.004720	7002.500000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64573.64573.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64573"	AANATTNPSQLLPLELVDKCIGSR	A[+42]ANATTNPSQLLPLELVDKC[+57]IGSR	M	I	99.700000	80.700000	60.900000	73.500000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2655.400000	2.000000	-0.000071	-0.027000	2.000000	25.000000	15.325300	8.645133	0.642100	100.856500	60.145700	0.597350	NaN	NaN	NaN	19.260148	12.542509	1.116501	117.326160	81.669767	0.892967	NaN	NaN	NaN	68.293154	47.106138	0.000000	0.000000	0.000000	0.000000	0.198399	0.155780	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=4 SV=1	B8ZZF8_HUMAN	B8ZZF8_HUMAN	U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=4 SV=1	98.000000	0.004720	7002.500000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64571.64571.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64571"	AANATTNPSQLLPLELVDKCIGSR	A[+42]ANATTNPSQLLPLELVDKC[+57]IGSR	M	I	99.700000	100.000000	60.500000	99.700000	Acetyl (+42), Dimethyl (+28), Carbamidomethyl (+57)	2637.380000	2.000000	-0.000230	-0.088000	2.000000	25.000000	15.325300	8.645133	0.642100	100.856500	60.145700	0.597350	NaN	NaN	NaN	19.260148	12.542509	1.116501	117.326160	81.669767	0.892967	NaN	NaN	NaN	68.293154	47.106138	0.000000	0.000000	0.000000	0.000000	0.198229	0.155570	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	RL22_HUMAN	RL22_HUMAN	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	100.000000	0.028800	14769.300000	3.000000	7.000000	10.000000	Nsco_Tails_biological_replicate1_apoptosis.30131.30131.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30131"	AANFEQFLQER	A[+28]ANFEQFLQER	D	I	99.700000	92.100000	52.200000	75.200000	Dimethyl (+28)	1379.680000	2.000000	-0.000740	-0.540000	36.000000	46.000000	0.474300	0.176267	0.371633	0.827650	0.339900	0.410700	NaN	NaN	NaN	0.596079	0.255731	0.646206	0.962804	0.461538	0.613947	NaN	NaN	NaN	0.779441	0.358635	0.147089	0.177888	0.648539	0.778399	0.198059	0.154738	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	RL22_HUMAN	RL22_HUMAN	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	100.000000	0.014500	14769.300000	2.000000	10.000000	11.000000	Spectrum59036 scans:32079,	AANFEQFLQER	A[+28]ANFEQFLQER	D	I	99.700000	67.200000	49.500000	54.400000	Dimethyl (+28), Label:13C(6) (+6)	1385.700000	2.000000	-0.000650	-0.470000	36.000000	46.000000	0.474300	0.176267	0.371633	0.827650	0.339900	0.410700	NaN	NaN	NaN	0.596079	0.255731	0.646206	0.962804	0.461538	0.613947	NaN	NaN	NaN	0.779441	0.358635	0.147089	0.177888	0.646076	0.777419	0.197890	0.154635	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	RL22_HUMAN	RL22_HUMAN	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	100.000000	0.067200	14769.300000	3.000000	11.000000	15.000000	Nsco_Tails_biological_replicate2_apoptosis.26272.26272.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26272"	AANFEQFLQER	A[+28]ANFEQFLQER	D	I	99.700000	87.400000	52.500000	71.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1389.690000	2.000000	-0.001100	-0.800000	36.000000	46.000000	0.474300	0.176267	0.371633	0.827650	0.339900	0.410700	NaN	NaN	NaN	0.596079	0.255731	0.646206	0.962804	0.461538	0.613947	NaN	NaN	NaN	0.779441	0.358635	0.147089	0.177888	0.643632	0.776441	0.197721	0.153608	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform P of Kinesin light chain 1 OS=Homo sapiens GN=KLC1	sp|Q07866-7|KLC1_HUMAN	KLC1_HUMAN	Isoform P of Kinesin light chain 1 OS=Homo sapiens GN=KLC1	100.000000	0.008960	66274.900000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.27600.27600.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27600"	AANLLNDALAIR	A[+28]ANLLNDALAIR	D	E	99.700000	76.200000	54.600000	36.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1291.750000	2.000000	0.001200	0.940000	274.000000	285.000000	0.161567	0.034933	0.180300	0.624200	0.248500	0.398100	NaN	NaN	NaN	0.203050	0.050682	0.313511	0.726131	0.337430	0.595112	NaN	NaN	NaN	0.464590	0.194056	0.326414	0.405089	1.000000	1.000000	0.197552	0.153506	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	THUMP domain-containing protein 1 OS=Homo sapiens GN=THUMPD1 PE=4 SV=1	H3BNW0_HUMAN	H3BNW0_HUMAN	THUMP domain-containing protein 1 OS=Homo sapiens GN=THUMPD1 PE=4 SV=1	98.800000	0.007900	15743.700000	1.000000	3.000000	6.000000	Spectrum22598 scans:3057,	AAPAQQTTQPGGGKR	A[+42]APAQQTTQPGGGKR	M	K	99.700000	67.900000	51.700000	45.400000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1546.850000	2.000000	-0.001200	-0.770000	2.000000	16.000000	112.057900	61.864833	0.537600	56.290200	35.574050	0.635950	NaN	NaN	NaN	140.829333	89.754570	0.934794	65.482274	48.304773	0.950669	NaN	NaN	NaN	103.155803	69.029671	0.000000	0.000000	0.000000	0.000000	0.197215	0.152193	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	THUMP domain-containing protein 1 OS=Homo sapiens GN=THUMPD1 PE=4 SV=1	H3BNW0_HUMAN	H3BNW0_HUMAN	THUMP domain-containing protein 1 OS=Homo sapiens GN=THUMPD1 PE=4 SV=1	98.800000	0.007900	15743.700000	1.000000	3.000000	6.000000	Spectrum22599 scans:3058,	AAPAQQTTQPGGGKR	A[+42]APAQQTTQPGGGKR	M	K	99.700000	78.200000	51.300000	60.100000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1554.820000	2.000000	-0.001600	-1.000000	2.000000	16.000000	112.057900	61.864833	0.537600	56.290200	35.574050	0.635950	NaN	NaN	NaN	140.829333	89.754570	0.934794	65.482274	48.304773	0.950669	NaN	NaN	NaN	103.155803	69.029671	0.000000	0.000000	0.000000	0.000000	0.196545	0.152093	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	THUMP domain-containing protein 1 OS=Homo sapiens GN=THUMPD1 PE=4 SV=1	THUM1_HUMAN	THUM1_HUMAN	THUMP domain-containing protein 1 OS=Homo sapiens GN=THUMPD1 PE=1 SV=2	98.800000	0.007510	39297.500000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.3674.3674.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3674"	AAPAQQTTQPGGGKR	A[+42]APAQQTTQPGGGKR	M	K	99.700000	59.700000	55.000000	43.600000	Acetyl (+42), Dimethyl (+28)	1536.800000	2.000000	0.000310	0.200000	2.000000	16.000000	112.057900	61.864833	0.537600	56.290200	35.574050	0.635950	NaN	NaN	NaN	140.829333	89.754570	0.934794	65.482274	48.304773	0.950669	NaN	NaN	NaN	103.155803	69.029671	0.000000	0.000000	0.000000	0.000000	0.196211	0.151993	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Trifunctional enzyme subunit beta, mitochondrial OS=Homo sapiens GN=HADHB PE=1 SV=3	ECHB_HUMAN	ECHB_HUMAN	Trifunctional enzyme subunit beta, mitochondrial OS=Homo sapiens GN=HADHB PE=1 SV=3	100.000000	0.011900	51278.000000	2.000000	3.000000	9.000000	Spectrum22570 scans:2678,	AAPAVQTK	A[+28]APAVQTK	R	T	99.000000	61.000000	46.700000	32.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	848.520000	2.000000	0.000160	0.190000	34.000000	41.000000	1.865167	0.601333	0.382700	24.498200	17.363200	0.702000	NaN	NaN	NaN	2.344058	0.872425	0.665449	28.498706	23.576889	1.049406	NaN	NaN	NaN	15.421382	12.224657	0.353419	0.444600	1.000000	1.000000	0.195548	0.146785	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Trifunctional enzyme subunit beta, mitochondrial OS=Homo sapiens GN=HADHB PE=1 SV=3	ECHB_HUMAN	ECHB_HUMAN	Trifunctional enzyme subunit beta, mitochondrial OS=Homo sapiens GN=HADHB PE=1 SV=3	100.000000	0.011900	51278.000000	2.000000	3.000000	9.000000	Spectrum21373 scans:2722,	AAPAVQTK	A[+28]APAVQTK	R	T	99.000000	61.200000	45.200000	30.400000	Dimethyl (+28), Dimethyl:2H(4) (+32)	844.530000	2.000000	0.000310	0.370000	34.000000	41.000000	1.865167	0.601333	0.382700	24.498200	17.363200	0.702000	NaN	NaN	NaN	2.344058	0.872425	0.665449	28.498706	23.576889	1.049406	NaN	NaN	NaN	15.421382	12.224657	0.353419	0.444600	1.000000	1.000000	0.195383	0.146692	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglucomutase-2 OS=Homo sapiens GN=PGM2 PE=1 SV=4	PGM2_HUMAN	PGM2_HUMAN	Phosphoglucomutase-2 OS=Homo sapiens GN=PGM2 PE=1 SV=4	100.000000	0.009220	68267.700000	2.000000	4.000000	7.000000	Spectrum42058 scans:12422,	AAPEGSGLGEDAR	A[+42]APEGSGLGEDAR	M	L	99.700000	79.900000	46.000000	67.200000	Acetyl (+42), Label:13C(6) (+6)	1276.600000	2.000000	-0.001000	-0.800000	2.000000	14.000000	0.543000	0.356667	0.658767	1.371250	3.501750	0.920000	NaN	1.725429	NaN	0.682418	0.517458	1.145482	1.595172	4.754905	1.375290	NaN	0.734844	NaN	1.138795	2.002402	0.242652	0.283283	1.000000	1.000000	0.195218	0.009995	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Phosphoglucomutase-2 OS=Homo sapiens GN=PGM2 PE=1 SV=4	PGM2_HUMAN	PGM2_HUMAN	Phosphoglucomutase-2 OS=Homo sapiens GN=PGM2 PE=1 SV=4	100.000000	0.004670	68267.700000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.24918.24918.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24918"	AAPEGSGLGEDAR	A[+42]APEGSGLGEDAR	M	L	99.700000	87.200000	48.000000	66.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1280.590000	2.000000	-0.002100	-1.600000	2.000000	14.000000	0.543000	0.356667	0.658767	1.371250	3.501750	0.920000	NaN	1.725429	NaN	0.682418	0.517458	1.145482	1.595172	4.754905	1.375290	NaN	0.734844	NaN	1.138795	2.002402	0.242652	0.283283	1.000000	1.000000	0.195053	0.009951	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Phosphoglucomutase-2 OS=Homo sapiens GN=PGM2 PE=1 SV=4	PGM2_HUMAN	PGM2_HUMAN	Phosphoglucomutase-2 OS=Homo sapiens GN=PGM2 PE=1 SV=4	100.000000	0.004670	68267.700000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.25003.25003.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25003"	AAPEGSGLGEDAR	A[+42]APEGSGLGEDAR	M	L	99.700000	87.300000	47.600000	56.000000	Acetyl (+42)	1270.580000	2.000000	-0.002500	-2.000000	2.000000	14.000000	0.543000	0.356667	0.658767	1.371250	3.501750	0.920000	NaN	1.725429	NaN	0.682418	0.517458	1.145482	1.595172	4.754905	1.375290	NaN	0.734844	NaN	1.138795	2.002402	0.242652	0.283283	1.000000	1.000000	0.194889	0.009945	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 SV=1	PMM2_HUMAN	PMM2_HUMAN	Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 SV=1	100.000000	0.005760	28065.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.43769.43769.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43769"	AAPGPALCLFDVDGTLTAPR	A[+42]APGPALC[+57]LFDVDGTLTAPR	M	Q	99.700000	81.300000	56.600000	80.900000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2093.050000	2.000000	0.000690	0.330000	2.000000	21.000000	0.642633	0.425967	0.664033	0.583250	0.461700	0.906950	NaN	NaN	NaN	0.807633	0.618000	1.154640	0.678494	0.626926	1.355781	NaN	NaN	NaN	0.743063	0.622463	0.055181	0.004565	0.228769	0.018902	0.194725	0.145768	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 SV=1	PMM2_HUMAN	PMM2_HUMAN	Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 SV=1	98.800000	0.009220	28065.400000	1.000000	4.000000	7.000000	Spectrum71705 scans:47498,	AAPGPALCLFDVDGTLTAPR	A[+42]APGPALC[+57]LFDVDGTLTAPR	M	Q	99.700000	81.300000	52.600000	78.900000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6) (+6)	2089.060000	2.000000	-0.005300	-2.500000	2.000000	21.000000	0.642633	0.425967	0.664033	0.583250	0.461700	0.906950	NaN	NaN	NaN	0.807633	0.618000	1.154640	0.678494	0.626926	1.355781	NaN	NaN	NaN	0.743063	0.622463	0.055181	0.004565	0.228496	0.018879	0.194398	0.145310	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 SV=1	PMM2_HUMAN	PMM2_HUMAN	Phosphomannomutase 2 OS=Homo sapiens GN=PMM2 PE=1 SV=1	98.800000	0.009220	28065.400000	1.000000	4.000000	7.000000	Spectrum71717 scans:47514,	AAPGPALCLFDVDGTLTAPR	A[+42]APGPALC[+57]LFDVDGTLTAPR	M	Q	99.700000	85.800000	52.000000	73.600000	Acetyl (+42), Carbamidomethyl (+57)	2083.040000	2.000000	-0.003000	-1.400000	2.000000	21.000000	0.642633	0.425967	0.664033	0.583250	0.461700	0.906950	NaN	NaN	NaN	0.807633	0.618000	1.154640	0.678494	0.626926	1.355781	NaN	NaN	NaN	0.743063	0.622463	0.055181	0.004565	0.228223	0.018857	0.194235	0.143152	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=3	GLGB_HUMAN	GLGB_HUMAN	1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=3	100.000000	0.005270	80459.100000	2.000000	4.000000	4.000000	Spectrum72823 scans:49540,	AAPMTPAARPEDYEAALNAALADVPELAR	A[+42]APM[+16]TPAARPEDYEAALNAALADVPELAR	M	L	99.700000	52.800000	54.600000	42.000000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10), Label:13C(6)15N(4) (+10)	3071.510000	3.000000	0.000660	0.220000	2.000000	30.000000	0.378300	2.307000	6.394400	NaN	NaN	NaN	NaN	NaN	NaN	0.475430	3.347035	11.118762	NaN	NaN	NaN	NaN	NaN	NaN	0.475430	3.347035	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=3	GLGB_HUMAN	GLGB_HUMAN	1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=3	100.000000	0.005270	80459.100000	2.000000	4.000000	4.000000	Spectrum72820 scans:49536,	AAPMTPAARPEDYEAALNAALADVPELAR	A[+42]APM[+16]TPAARPEDYEAALNAALADVPELAR	M	L	99.700000	68.700000	55.300000	61.000000	Acetyl (+42), Oxidation (+16), Label:13C(6) (+6), Label:13C(6) (+6)	3063.530000	3.000000	-0.005400	-1.800000	2.000000	30.000000	0.378300	2.307000	6.394400	NaN	NaN	NaN	NaN	NaN	NaN	0.475430	3.347035	11.118762	NaN	NaN	NaN	NaN	NaN	NaN	0.475430	3.347035	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Protein LSM12 homolog OS=Homo sapiens GN=LSM12	sp|Q3MHD2|LSM12_HUMAN	LSM12_HUMAN	Protein LSM12 homolog OS=Homo sapiens GN=LSM12 PE=1 SV=2	94.000000	0.001320	21682.400000	1.000000	1.000000	1.000000	Spectrum57296 scans:29995,	AAPPGEYFSVGSQVSCR	A[+42]APPGEYFSVGSQVSC[+57]R	M	T	98.600000	48.300000	47.000000	40.200000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6) (+6)	1858.860000	2.000000	-0.002200	-1.200000	2.000000	18.000000	0.236633	0.152200	0.633200	1.378150	0.756050	0.508150	NaN	NaN	NaN	0.297390	0.220814	1.101026	1.603199	1.026614	0.759623	NaN	NaN	NaN	0.950295	0.623714	0.383236	0.365124	1.000000	1.000000	0.193261	0.139610	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Protein LSM12 homolog OS=Homo sapiens GN=LSM12	tr|K7ELG9|K7ELG9_HUMAN	K7ELG9_HUMAN	Protein LSM12 homolog OS=Homo sapiens GN=LSM12 PE=1 SV=1	98.900000	0.007510	0.000000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.28326.28326.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28326"	AAPPGEYFSVGSQVSCR	A[+42]APPGEYFSVGSQVSC[+57]R	M	T	99.700000	81.300000	50.000000	73.900000	Acetyl (+42), Carbamidomethyl (+57)	1852.850000	2.000000	0.004000	2.200000	0.000000	0.000000	0.236633	0.152200	0.633200	1.378150	0.756050	0.508150	NaN	NaN	NaN	0.297390	0.220814	1.101026	1.603199	1.026614	0.759623	NaN	NaN	NaN	0.950295	0.623714	0.383236	0.365124	1.000000	1.000000	0.193100	0.139526	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Protein LSM12 homolog OS=Homo sapiens GN=LSM12	tr|K7ELG9|K7ELG9_HUMAN	K7ELG9_HUMAN	Protein LSM12 homolog OS=Homo sapiens GN=LSM12 PE=1 SV=1	98.900000	0.008960	0.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.24399.24399.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24399"	AAPPGEYFSVGSQVSCR	A[+42]APPGEYFSVGSQVSC[+57]R	M	T	99.700000	68.800000	49.800000	60.600000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1862.850000	2.000000	-0.004200	-2.300000	0.000000	0.000000	0.236633	0.152200	0.633200	1.378150	0.756050	0.508150	NaN	NaN	NaN	0.297390	0.220814	1.101026	1.603199	1.026614	0.759623	NaN	NaN	NaN	0.950295	0.623714	0.383236	0.365124	1.000000	1.000000	0.192457	0.137698	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Coiled-coil domain-containing protein 43 OS=Homo sapiens GN=CCDC43	tr|Q86WV7|Q86WV7_HUMAN	Q86WV7_HUMAN	CCDC43 protein OS=Homo sapiens GN=CCDC43 PE=1 SV=1	99.900000	0.006590	0.000000	1.000000	3.000000	5.000000	Spectrum69380 scans:44269,	AAPSEVAAIAPGEGDGGGGGFGSWLDGR	A[+42]APSEVAAIAPGEGDGGGGGFGSWLDGR	M	L	99.700000	97.200000	48.100000	84.200000	Acetyl (+42)	2599.190000	3.000000	-0.004900	-1.900000	0.000000	0.000000	NaN	1.859400	NaN	0.655400	0.312600	0.475450	NaN	NaN	NaN	NaN	2.697650	NaN	0.762425	0.424469	0.710741	NaN	NaN	NaN	0.762425	1.561059	NaN	0.400644	NaN	1.000000	1.000000	0.136722	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Coiled-coil domain-containing protein 43 OS=Homo sapiens GN=CCDC43	tr|Q86WV7|Q86WV7_HUMAN	Q86WV7_HUMAN	CCDC43 protein OS=Homo sapiens GN=CCDC43 PE=1 SV=1	99.900000	0.006590	0.000000	1.000000	3.000000	5.000000	Spectrum69251 scans:44119,	AAPSEVAAIAPGEGDGGGGGFGSWLDGR	A[+42]APSEVAAIAPGEGDGGGGGFGSWLDGR	M	L	99.700000	92.100000	49.700000	87.200000	Acetyl (+42), Label:13C(6) (+6)	2605.220000	3.000000	0.000760	0.290000	0.000000	0.000000	NaN	1.859400	NaN	0.655400	0.312600	0.475450	NaN	NaN	NaN	NaN	2.697650	NaN	0.762425	0.424469	0.710741	NaN	NaN	NaN	0.762425	1.561059	NaN	0.400644	NaN	1.000000	1.000000	0.135919	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=4 SV=1	E5RGS4_HUMAN	E5RGS4_HUMAN	Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=4 SV=1	98.800000	0.021500	13448.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction5A.23910.23910.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23910"	AAPVDLELKKAF	A[+42]APVDLELKKAF	M	T	99.500000	59.900000	54.200000	45.900000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1406.860000	2.000000	-0.000780	-0.550000	2.000000	13.000000	54.899867	20.949600	0.377900	65.812250	35.653500	0.540100	NaN	NaN	NaN	68.995685	30.394042	0.657103	76.559255	48.412655	0.807385	NaN	NaN	NaN	72.777470	39.403349	0.000000	0.000000	0.000000	0.000000	0.188382	0.135600	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=4 SV=1	E5RGS4_HUMAN	E5RGS4_HUMAN	Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=4 SV=1	98.300000	0.004480	13448.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.27478.27478.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27478"	AAPVDLELKKAF	A[+42]APVDLELKKAF	M	T	99.000000	54.800000	55.000000	41.900000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1414.840000	2.000000	-0.002000	-1.400000	2.000000	13.000000	54.899867	20.949600	0.377900	65.812250	35.653500	0.540100	NaN	NaN	NaN	68.995685	30.394042	0.657103	76.559255	48.412655	0.807385	NaN	NaN	NaN	72.777470	39.403349	0.000000	0.000000	0.000000	0.000000	0.188229	0.134888	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Translation initiation factor eIF-2B subunit epsilon OS=Homo sapiens GN=EIF2B5 PE=4 SV=1	E9PC74_HUMAN	E9PC74_HUMAN	Translation initiation factor eIF-2B subunit epsilon OS=Homo sapiens GN=EIF2B5 PE=4 SV=1	98.600000	0.005010	78328.700000	1.000000	1.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.24398.24398.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24398"	AAPVVAPPGVVVSR	A[+42]APVVAPPGVVVSR	M	A	99.600000	59.100000	55.000000	43.800000	Acetyl (+42)	1359.790000	2.000000	-0.002000	-1.500000	2.000000	15.000000	NaN	1.011033	NaN	0.453550	0.175100	0.408700	NaN	NaN	17.955400	NaN	1.466825	NaN	0.527614	0.237762	0.610957	NaN	NaN	8.604274	0.527614	0.852293	NaN	0.397698	NaN	1.000000	1.000000	0.134810	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6	sp|O94906|PRP6_HUMAN	PRP6_HUMAN	Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1	100.000000	0.005270	106909.700000	2.000000	3.000000	4.000000	Spectrum6691 scans:26768,	AAQDLCEEALR	A[+28]AQDLC[+57]EEALR	R	H	99.700000	64.000000	46.900000	43.500000	Dimethyl (+28), Carbamidomethyl (+57)	1302.620000	2.000000	-0.001800	-1.400000	693.000000	703.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6	sp|O94906-2|PRP6_HUMAN	PRP6_HUMAN	Isoform 2 of Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6	100.000000	0.005270	102413.500000	2.000000	3.000000	4.000000	Spectrum6694 scans:26781,	AAQDLCEEALR	A[+28]AQDLC[+57]EEALR	R	H	99.400000	67.100000	46.900000	36.200000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1312.630000	2.000000	-0.003800	-2.900000	653.000000	663.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3	RAN_HUMAN	RAN_HUMAN	GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3	100.000000	0.008640	24405.100000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.17377.17377.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17377"	AAQGEPQVQFK	A[+42]AQGEPQVQFK	M	L	99.700000	66.000000	52.800000	53.900000	Acetyl (+42), Dimethyl (+28)	1271.650000	2.000000	-0.001100	-0.880000	2.000000	12.000000	19.554267	18.416000	0.787800	1.388500	4.348500	2.914950	NaN	NaN	NaN	24.574924	26.718251	1.369849	1.615239	5.904678	4.357501	NaN	NaN	NaN	13.095081	16.311465	0.398051	0.160439	1.000000	0.632640	0.187012	0.132417	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3	RAN_HUMAN	RAN_HUMAN	GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3	100.000000	0.004670	24405.100000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.34499.34499.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34499"	AAQGEPQVQFK	A[+42]AQGEPQVQFK	M	L	99.500000	58.300000	53.200000	51.200000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1279.660000	2.000000	-0.001200	-0.920000	2.000000	12.000000	19.554267	18.416000	0.787800	1.388500	4.348500	2.914950	NaN	NaN	NaN	24.574924	26.718251	1.369849	1.615239	5.904678	4.357501	NaN	NaN	NaN	13.095081	16.311465	0.398051	0.160439	1.000000	0.631922	0.186861	0.132342	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3	ATPB_HUMAN	ATPB_HUMAN	ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3	100.000000	0.006590	56542.500000	3.000000	5.000000	5.000000	Spectrum33627 scans:2724,	AAQTSPSPKAGAATGR	A[+28]AQTSPSPKAGAATGR	Y	I	98.500000	33.500000	51.700000	12.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1535.870000	3.000000	0.001300	0.880000	47.000000	62.000000	468.839600	189.078300	0.406567	NaN	NaN	NaN	NaN	NaN	NaN	589.216539	274.318068	0.706950	NaN	NaN	NaN	NaN	NaN	NaN	589.216539	274.318068	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	sp|Q13263|TIF1B_HUMAN	TIF1B_HUMAN	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	100.000000	0.013200	88531.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction2A.16387.16387.3 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16387"	AASAAAASAAAASAASGSPGPGEGSAGGEKR	A[+42]ASAAAASAAAASAASGSPGPGEGSAGGEKR	M	S	99.700000	91.700000	55.300000	91.700000	Acetyl (+42), Dimethyl (+28)	2612.240000	3.000000	-0.003800	-1.500000	2.000000	32.000000	62.210267	39.074867	0.712300	616.702450	289.311500	0.507000	NaN	NaN	NaN	78.183067	56.690492	1.238567	717.408696	392.846086	0.757904	NaN	NaN	NaN	397.795881	224.768289	0.000000	0.000000	0.000000	0.000000	0.186559	0.132115	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	sp|Q13263|TIF1B_HUMAN	TIF1B_HUMAN	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	100.000000	0.007900	88531.000000	4.000000	6.000000	6.000000	Spectrum22263 scans:13476,	AASAAAASAAAASAASGSPGPGEGSAGGEKR	A[+42]ASAAAASAAAASAASGSPGPGEGSAGGEKR	M	S	99.700000	84.400000	53.200000	72.100000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2622.290000	3.000000	0.003000	1.200000	2.000000	32.000000	62.210267	39.074867	0.712300	616.702450	289.311500	0.507000	NaN	NaN	NaN	78.183067	56.690492	1.238567	717.408696	392.846086	0.757904	NaN	NaN	NaN	397.795881	224.768289	0.000000	0.000000	0.000000	0.000000	0.186409	0.131964	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	sp|Q13263|TIF1B_HUMAN	TIF1B_HUMAN	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	100.000000	0.007900	88531.000000	4.000000	6.000000	6.000000	Spectrum22262 scans:13472,	AASAAAASAAAASAASGSPGPGEGSAGGEKR	A[+42]ASAAAASAAAASAASGSPGPGEGSAGGEKR	M	S	99.700000	82.800000	51.800000	71.100000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2630.270000	3.000000	0.000420	0.160000	2.000000	32.000000	62.210267	39.074867	0.712300	616.702450	289.311500	0.507000	NaN	NaN	NaN	78.183067	56.690492	1.238567	717.408696	392.846086	0.757904	NaN	NaN	NaN	397.795881	224.768289	0.000000	0.000000	0.000000	0.000000	0.186259	0.131141	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Kelch-like protein 7 OS=Homo sapiens GN=KLHL7 PE=4 SV=1	E5RFN1_HUMAN	E5RFN1_HUMAN	Kelch-like protein 7 OS=Homo sapiens GN=KLHL7 PE=4 SV=1	99.400000	0.010800	4380.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.3099.3099.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3099"	AASGVEKSSK	A[+42]ASGVEKSSK	M	K	99.700000	62.100000	52.400000	29.600000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	1060.580000	2.000000	0.000160	0.150000	2.000000	11.000000	0.592267	0.216800	0.552433	1.273600	6.218750	0.146900	NaN	NaN	NaN	0.744334	0.314537	0.960587	1.481576	8.444226	0.219598	NaN	NaN	NaN	1.112955	4.379381	0.203615	0.476298	0.796555	1.000000	0.186109	0.131067	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	THOP1_HUMAN	THOP1_HUMAN	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	100.000000	0.011900	78822.600000	5.000000	8.000000	9.000000	Spectrum49259 scans:20713,	AASPCSVVNDLR	A[+28]ASPC[+57]SVVNDLR	D	W	99.700000	81.100000	49.300000	65.900000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1321.670000	2.000000	-0.001400	-1.100000	14.000000	25.000000	0.554700	1.509100	5.471433	0.740600	0.573400	0.855100	NaN	NaN	NaN	0.697122	2.189428	9.513882	0.861538	0.778600	1.278272	NaN	NaN	NaN	0.779330	1.484014	0.066907	0.282486	0.261449	1.000000	0.185661	0.129381	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Dual specificity mitogen-activated protein kinase kinase 7 OS=Homo sapiens GN=MAP2K7	sp|O14733-2|MP2K7_HUMAN	MP2K7_HUMAN	Isoform 2 of Dual specificity mitogen-activated protein kinase kinase 7 OS=Homo sapiens GN=MAP2K7	96.000000	0.002500	51864.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.19161.19161.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19161"	AASSLEQKLSR	A[+42]ASSLEQKLSR	M	L	99.000000	53.700000	54.100000	32.500000	Acetyl (+42), Dimethyl (+28)	1258.690000	2.000000	-0.002700	-2.100000	2.000000	12.000000	2.057300	2.260533	1.602333	9.896800	3.157400	0.305450	85.934471	NaN	NaN	2.585522	3.279621	2.786182	11.512927	4.287324	0.456611	57.475485	NaN	NaN	23.857978	3.783473	0.092984	0.084284	0.362940	0.329352	0.012608	0.129309	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 3 of Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1	sp|Q9BZJ0-3|CRNL1_HUMAN	CRNL1_HUMAN	Isoform 3 of Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1	98.100000	0.002500	99058.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.2360.2360.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2360"	AASTAAGKQR	A[+42]ASTAAGKQR	M	I	99.500000	65.600000	52.800000	40.700000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1047.590000	2.000000	0.006200	6.000000	151.000000	160.000000	1.658067	1.191633	0.448033	NaN	NaN	0.241450	NaN	NaN	NaN	2.083784	1.728842	0.779053	NaN	NaN	0.360939	NaN	NaN	NaN	2.083784	1.728842	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 3 of Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1	sp|Q9BZJ0-3|CRNL1_HUMAN	CRNL1_HUMAN	Isoform 3 of Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1	98.900000	0.008960	99058.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.2576.2576.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2576"	AASTAAGKQR	A[+42]ASTAAGKQR	M	I	99.400000	56.600000	52.300000	36.000000	Acetyl (+42), Dimethyl (+28)	1029.560000	2.000000	-0.000180	-0.180000	151.000000	160.000000	1.658067	1.191633	0.448033	NaN	NaN	0.241450	NaN	NaN	NaN	2.083784	1.728842	0.779053	NaN	NaN	0.360939	NaN	NaN	NaN	2.083784	1.728842	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein phosphatase inhibitor 2 (Fragment) OS=Homo sapiens GN=PPP1R2 PE=4 SV=1	E7EMN6_HUMAN	E7EMN6_HUMAN	Protein phosphatase inhibitor 2 (Fragment) OS=Homo sapiens GN=PPP1R2 PE=4 SV=1	95.700000	0.006590	19227.800000	1.000000	3.000000	5.000000	Spectrum23682 scans:2030,	AASTASHR	A[+42]ASTASHR	M	P	99.000000	57.900000	44.600000	23.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	851.410000	2.000000	0.000100	0.120000	2.000000	9.000000	1.171467	12.948467	5.789833	0.285150	0.795100	0.390600	NaN	NaN	NaN	1.472247	18.785859	10.067524	0.331714	1.079639	0.583900	NaN	NaN	NaN	0.901981	9.932749	0.358918	0.431533	1.000000	1.000000	0.181866	0.128234	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein phosphatase inhibitor 2 (Fragment) OS=Homo sapiens GN=PPP1R2 PE=4 SV=1	E7EMN6_HUMAN	E7EMN6_HUMAN	Protein phosphatase inhibitor 2 (Fragment) OS=Homo sapiens GN=PPP1R2 PE=4 SV=1	95.700000	0.006590	19227.800000	1.000000	3.000000	5.000000	Spectrum33069 scans:2094,	AASTASHR	A[+42]ASTASHR	M	P	99.000000	74.000000	45.600000	39.200000	Acetyl (+42), Label:13C(6) (+6)	847.420000	2.000000	0.000022	0.026000	2.000000	9.000000	1.171467	12.948467	5.789833	0.285150	0.795100	0.390600	NaN	NaN	NaN	1.472247	18.785859	10.067524	0.331714	1.079639	0.583900	NaN	NaN	NaN	0.901981	9.932749	0.358918	0.431533	1.000000	1.000000	0.181723	0.128021	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein phosphatase inhibitor 2 (Fragment) OS=Homo sapiens GN=PPP1R2 PE=4 SV=1	E7EMN6_HUMAN	E7EMN6_HUMAN	Protein phosphatase inhibitor 2 (Fragment) OS=Homo sapiens GN=PPP1R2 PE=4 SV=1	95.700000	0.006590	19227.800000	1.000000	3.000000	5.000000	Spectrum33070 scans:2095,	AASTASHR	A[+42]ASTASHR	M	P	99.000000	73.700000	44.700000	44.200000	Acetyl (+42)	841.400000	2.000000	-0.000290	-0.340000	2.000000	9.000000	1.171467	12.948467	5.789833	0.285150	0.795100	0.390600	NaN	NaN	NaN	1.472247	18.785859	10.067524	0.331714	1.079639	0.583900	NaN	NaN	NaN	0.901981	9.932749	0.358918	0.431533	1.000000	1.000000	0.181580	0.127879	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 3 of T-cell activation Rho GTPase-activating protein OS=Homo sapiens GN=TAGAP	sp|Q8N103-3|TAGAP_HUMAN	TAGAP_HUMAN	Isoform 3 of T-cell activation Rho GTPase-activating protein OS=Homo sapiens GN=TAGAP	99.900000	0.007510	56900.900000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.34834.34834.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34834"	AATAAAVVAEEDTELR	A[+42]ATAAAVVAEEDTELR	M	D	99.700000	105.000000	53.700000	83.100000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1667.820000	2.000000	-0.002100	-1.200000	2.000000	17.000000	0.790067	1.205767	1.059300	0.674450	0.321050	0.481050	NaN	NaN	NaN	0.992920	1.749347	1.841941	0.784586	0.435943	0.719112	NaN	NaN	NaN	0.888753	1.092645	0.074277	0.344519	0.280762	1.000000	0.181438	0.127808	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 3 of T-cell activation Rho GTPase-activating protein OS=Homo sapiens GN=TAGAP	sp|Q8N103-3|TAGAP_HUMAN	TAGAP_HUMAN	Isoform 3 of T-cell activation Rho GTPase-activating protein OS=Homo sapiens GN=TAGAP	99.900000	0.007510	56900.900000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.34833.34833.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34833"	AATAAAVVAEEDTELR	A[+42]ATAAAVVAEEDTELR	M	D	99.700000	108.000000	53.500000	85.800000	Acetyl (+42)	1657.810000	2.000000	-0.001100	-0.660000	2.000000	17.000000	0.790067	1.205767	1.059300	0.674450	0.321050	0.481050	NaN	NaN	NaN	0.992920	1.749347	1.841941	0.784586	0.435943	0.719112	NaN	NaN	NaN	0.888753	1.092645	0.074277	0.344519	0.280457	1.000000	0.181296	0.127527	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Hypoxia-inducible factor 1-alpha inhibitor OS=Homo sapiens GN=HIF1AN PE=1 SV=2	HIF1N_HUMAN	HIF1N_HUMAN	Hypoxia-inducible factor 1-alpha inhibitor OS=Homo sapiens GN=HIF1AN PE=1 SV=2	100.000000	0.018400	40268.100000	2.000000	5.000000	14.000000	Spectrum50184 scans:21770,	AATAAEAVASGSGEPR	A[+42]ATAAEAVASGSGEPR	M	E	99.700000	96.100000	47.400000	72.100000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1495.710000	2.000000	-0.002000	-1.300000	2.000000	17.000000	0.480367	0.225333	0.479100	0.743600	0.446400	0.601400	0.885014	NaN	NaN	0.603703	0.326917	0.833073	0.865028	0.606151	0.899021	0.591923	NaN	NaN	0.686885	0.466534	0.016426	0.185117	0.061821	0.695944	0.012351	0.127456	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Hypoxia-inducible factor 1-alpha inhibitor OS=Homo sapiens GN=HIF1AN PE=1 SV=2	HIF1N_HUMAN	HIF1N_HUMAN	Hypoxia-inducible factor 1-alpha inhibitor OS=Homo sapiens GN=HIF1AN PE=1 SV=2	100.000000	0.018400	40268.100000	2.000000	5.000000	14.000000	Spectrum50060 scans:21626,	AATAAEAVASGSGEPR	A[+42]ATAAEAVASGSGEPR	M	E	99.700000	95.500000	47.300000	81.600000	Acetyl (+42)	1485.710000	2.000000	-0.000770	-0.520000	2.000000	17.000000	0.480367	0.225333	0.479100	0.743600	0.446400	0.601400	0.885014	NaN	NaN	0.603703	0.326917	0.833073	0.865028	0.606151	0.899021	0.591923	NaN	NaN	0.686885	0.466534	0.016426	0.185117	0.061754	0.692941	0.012342	0.127386	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Hypoxia-inducible factor 1-alpha inhibitor OS=Homo sapiens GN=HIF1AN PE=1 SV=2	HIF1N_HUMAN	HIF1N_HUMAN	Hypoxia-inducible factor 1-alpha inhibitor OS=Homo sapiens GN=HIF1AN PE=1 SV=2	100.000000	0.018400	40268.100000	2.000000	5.000000	14.000000	Spectrum50305 scans:21905,	AATAAEAVASGSGEPR	A[+42]ATAAEAVASGSGEPR	M	E	99.700000	117.000000	48.400000	85.000000	Acetyl (+42), Label:13C(6) (+6)	1491.730000	2.000000	-0.000880	-0.590000	2.000000	17.000000	0.480367	0.225333	0.479100	0.743600	0.446400	0.601400	0.885014	NaN	NaN	0.603703	0.326917	0.833073	0.865028	0.606151	0.899021	0.591923	NaN	NaN	0.686885	0.466534	0.016426	0.185117	0.061488	0.685546	0.012246	0.126967	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Proteasome assembly chaperone 1 OS=Homo sapiens GN=PSMG1	sp|O95456|PSMG1_HUMAN	PSMG1_HUMAN	Proteasome assembly chaperone 1 OS=Homo sapiens GN=PSMG1 PE=1 SV=1	98.800000	0.007900	32836.100000	1.000000	3.000000	6.000000	Spectrum32153 scans:26304,	AATFFGEVVKAPCR	A[+42]ATFFGEVVKAPC[+57]R	M	A	99.700000	96.100000	51.900000	74.600000	Acetyl (+42), Dimethyl:2H(4) (+32), Carbamidomethyl (+57), Label:13C(6) (+6)	1631.870000	2.000000	-0.003700	-2.300000	2.000000	15.000000	14.976300	7.551400	0.503333	19.192700	12.185100	0.636550	NaN	NaN	1.170057	18.821541	10.955702	0.875210	22.326829	16.545726	0.951566	NaN	NaN	0.560694	20.574185	13.750714	0.000000	0.000000	0.000000	0.000000	0.179467	0.126205	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Proteasome assembly chaperone 1 OS=Homo sapiens GN=PSMG1	sp|O95456|PSMG1_HUMAN	PSMG1_HUMAN	Proteasome assembly chaperone 1 OS=Homo sapiens GN=PSMG1 PE=1 SV=1	98.800000	0.007900	32836.100000	1.000000	3.000000	6.000000	Spectrum23309 scans:22385,	AATFFGEVVKAPCR	A[+42]ATFFGEVVKAPC[+57]R	M	A	99.700000	109.000000	51.300000	78.700000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1639.850000	2.000000	-0.001600	-0.960000	2.000000	15.000000	14.976300	7.551400	0.503333	19.192700	12.185100	0.636550	NaN	NaN	1.170057	18.821541	10.955702	0.875210	22.326829	16.545726	0.951566	NaN	NaN	0.560694	20.574185	13.750714	0.000000	0.000000	0.000000	0.000000	0.179189	0.126136	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Proteasome assembly chaperone 1 OS=Homo sapiens GN=PSMG1	sp|O95456|PSMG1_HUMAN	PSMG1_HUMAN	Proteasome assembly chaperone 1 OS=Homo sapiens GN=PSMG1 PE=1 SV=1	98.900000	0.025000	32836.100000	1.000000	3.000000	10.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.36013.36013.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36013"	AATFFGEVVKAPCR	A[+42]ATFFGEVVKAPC[+57]R	M	A	99.700000	110.000000	54.800000	96.900000	Acetyl (+42), Dimethyl (+28), Carbamidomethyl (+57)	1621.830000	2.000000	-0.001200	-0.720000	2.000000	15.000000	14.976300	7.551400	0.503333	19.192700	12.185100	0.636550	NaN	NaN	1.170057	18.821541	10.955702	0.875210	22.326829	16.545726	0.951566	NaN	NaN	0.560694	20.574185	13.750714	0.000000	0.000000	0.000000	0.000000	0.178498	0.125725	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=4 SV=1	F5H4R4_HUMAN	F5H4R4_HUMAN	mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=4 SV=1	97.800000	0.008960	13526.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.14515.14515.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14515"	AAVAAGGLVGKGR	A[+42]AVAAGGLVGKGR	M	D	99.400000	55.800000	53.800000	33.700000	Acetyl (+42), Dimethyl (+28)	1195.700000	2.000000	-0.000950	-0.800000	2.000000	14.000000	NaN	NaN	NaN	32.230700	6.157250	0.194350	NaN	NaN	NaN	NaN	NaN	NaN	37.493907	8.360717	0.290530	NaN	NaN	NaN	37.493907	8.360717	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=4 SV=1	F5H4R4_HUMAN	F5H4R4_HUMAN	mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=4 SV=1	97.800000	0.008960	13526.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.14517.14517.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14517"	AAVAAGGLVGKGR	A[+42]AVAAGGLVGKGR	M	D	99.500000	59.100000	53.900000	44.700000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1213.730000	2.000000	-0.000330	-0.270000	2.000000	14.000000	NaN	NaN	NaN	32.230700	6.157250	0.194350	NaN	NaN	NaN	NaN	NaN	NaN	37.493907	8.360717	0.290530	NaN	NaN	NaN	37.493907	8.360717	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Heterogeneous nuclear ribonucleoproteins C1/C2 OS=Homo sapiens GN=HNRNPC PE=2 SV=1	B4DY08_HUMAN	B4DY08_HUMAN	Heterogeneous nuclear ribonucleoproteins C1/C2 OS=Homo sapiens GN=HNRNPC PE=2 SV=1	99.900000	0.005760	31953.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.2791.2791.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2791"	AAVAGEDGR	A[+28]AVAGEDGR	R	M	99.700000	65.800000	49.300000	34.200000	Dimethyl (+28)	872.440000	2.000000	-0.000190	-0.210000	65.000000	73.000000	0.244267	1.583467	10.901667	NaN	1.493150	6.411750	NaN	NaN	NaN	0.306983	2.297321	18.956124	NaN	2.027497	9.584797	NaN	NaN	NaN	0.306983	2.162409	NaN	0.039667	NaN	0.145348	1.000000	0.125316	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Heterogeneous nuclear ribonucleoproteins C1/C2 OS=Homo sapiens GN=HNRNPC PE=2 SV=1	G3V2Q1_HUMAN	G3V2Q1_HUMAN	Heterogeneous nuclear ribonucleoproteins C1/C2 OS=Homo sapiens GN=HNRNPC PE=4 SV=1	99.900000	0.005760	33553.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.2797.2797.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2797"	AAVAGEDGR	A[+28]AVAGEDGR	R	M	99.700000	65.600000	50.000000	34.300000	Dimethyl (+28), Label:13C(6) (+6)	878.450000	2.000000	-0.000430	-0.490000	65.000000	73.000000	0.244267	1.583467	10.901667	NaN	1.493150	6.411750	NaN	NaN	NaN	0.306983	2.297321	18.956124	NaN	2.027497	9.584797	NaN	NaN	NaN	0.306983	2.162409	NaN	0.039667	NaN	0.144737	1.000000	0.124843	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4	sp|Q9UI10|EI2BD_HUMAN	EI2BD_HUMAN	Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2	100.000000	0.003950	57538.900000	2.000000	3.000000	3.000000	Spectrum19723 scans:13561,	AAVAVAVR	A[+42]AVAVAVR	M	E	99.000000	68.600000	46.700000	1.550000	Acetyl (+42), Label:13C(6)15N(4) (+10)	807.480000	2.000000	-0.000240	-0.290000	2.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4	sp|Q9UI10-3|EI2BD_HUMAN	EI2BD_HUMAN	Isoform 3 of Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4	100.000000	0.003950	57439.800000	2.000000	3.000000	3.000000	Spectrum19729 scans:13572,	AAVAVAVR	A[+42]AVAVAVR	M	E	99.000000	54.800000	46.500000	18.900000	Acetyl (+42), Label:13C(6) (+6)	803.500000	2.000000	-0.000140	-0.170000	2.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Programmed cell death protein 2-like OS=Homo sapiens GN=PDCD2L PE=1 SV=1	PDD2L_HUMAN	PDD2L_HUMAN	Programmed cell death protein 2-like OS=Homo sapiens GN=PDCD2L PE=1 SV=1	100.000000	0.007510	39398.800000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40374.40374.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40374"	AAVLKPVLLGLR	A[+42]AVLKPVLLGLR	M	D	99.100000	49.500000	50.200000	26.700000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1336.890000	2.000000	-0.001900	-1.400000	2.000000	13.000000	NaN	NaN	0.365400	NaN	NaN	0.670350	NaN	NaN	NaN	NaN	NaN	0.635368	NaN	NaN	1.002093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Programmed cell death protein 2-like OS=Homo sapiens GN=PDCD2L PE=1 SV=1	PDD2L_HUMAN	PDD2L_HUMAN	Programmed cell death protein 2-like OS=Homo sapiens GN=PDCD2L PE=1 SV=1	100.000000	0.007510	39398.800000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40397.40397.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40397"	AAVLKPVLLGLR	A[+42]AVLKPVLLGLR	M	D	99.700000	65.000000	50.800000	49.100000	Acetyl (+42), Dimethyl (+28)	1318.870000	2.000000	-0.000650	-0.500000	2.000000	13.000000	NaN	NaN	0.365400	NaN	NaN	0.670350	NaN	NaN	NaN	NaN	NaN	0.635368	NaN	NaN	1.002093	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Sorting nexin-5 OS=Homo sapiens GN=SNX5 PE=1 SV=1	SNX5_HUMAN	SNX5_HUMAN	Sorting nexin-5 OS=Homo sapiens GN=SNX5 PE=1 SV=1	98.800000	0.009220	46799.800000	1.000000	3.000000	7.000000	Spectrum12353 scans:45032,	AAVPELLQQQEEDR	A[+42]AVPELLQQQEEDR	M	S	99.500000	68.900000	50.200000	47.600000	Acetyl (+42), Label:13C(6) (+6)	1672.830000	2.000000	-0.004000	-2.400000	2.000000	15.000000	1.060767	0.366933	0.340933	0.657400	0.367750	0.545200	NaN	NaN	2.160114	1.333124	0.532353	0.592824	0.764752	0.499355	0.815009	NaN	NaN	1.035132	1.048938	0.515854	0.168434	0.020355	0.600685	0.072740	0.175518	0.123840	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Sorting nexin-5 OS=Homo sapiens GN=SNX5 PE=1 SV=1	SNX5_HUMAN	SNX5_HUMAN	Sorting nexin-5 OS=Homo sapiens GN=SNX5 PE=1 SV=1	98.800000	0.009220	46799.800000	1.000000	3.000000	7.000000	Spectrum31882 scans:23526,	AAVPELLQQQEEDR	A[+42]AVPELLQQQEEDR	M	S	99.600000	69.100000	49.300000	52.700000	Acetyl (+42)	1666.810000	2.000000	-0.003100	-1.900000	2.000000	15.000000	1.060767	0.366933	0.340933	0.657400	0.367750	0.545200	NaN	NaN	2.160114	1.333124	0.532353	0.592824	0.764752	0.499355	0.815009	NaN	NaN	1.035132	1.048938	0.515854	0.168434	0.020355	0.600069	0.072666	0.175385	0.123774	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Sorting nexin-5 OS=Homo sapiens GN=SNX5 PE=1 SV=1	SNX5_HUMAN	SNX5_HUMAN	Sorting nexin-5 OS=Homo sapiens GN=SNX5 PE=1 SV=1	98.800000	0.009220	46799.800000	1.000000	3.000000	7.000000	Spectrum31854 scans:23361,	AAVPELLQQQEEDR	A[+42]AVPELLQQQEEDR	M	S	99.700000	75.800000	49.500000	61.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1676.820000	2.000000	-0.003000	-1.800000	2.000000	15.000000	1.060767	0.366933	0.340933	0.657400	0.367750	0.545200	NaN	NaN	2.160114	1.333124	0.532353	0.592824	0.764752	0.499355	0.815009	NaN	NaN	1.035132	1.048938	0.515854	0.168434	0.020355	0.597004	0.072591	0.175253	0.122854	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.162000	15036.300000	9.000000	26.000000	123.000000	Spectrum60495 scans:33872,	AAVPGKTFVNITPAEVGVLVGKDR	A[+28]AVPGKTFVNITPAEVGVLVGKDR	W	S	99.100000	27.900000	52.200000	18.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2535.530000	4.000000	-0.001400	-0.550000	33.000000	56.000000	12.657833	8.162933	0.931733	13.509100	7.659850	0.626850	NaN	NaN	NaN	15.907796	11.842925	1.620124	15.715108	10.401046	0.937066	NaN	NaN	NaN	15.811452	11.121985	0.000000	0.000000	0.000000	0.000000	0.175120	0.122788	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.162000	15036.300000	9.000000	26.000000	123.000000	Spectrum60527 scans:33909,	AAVPGKTFVNITPAEVGVLVGKDR	A[+28]AVPGKTFVNITPAEVGVLVGKDR	W	S	99.700000	38.800000	53.600000	27.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2547.500000	4.000000	0.002000	0.790000	33.000000	56.000000	12.657833	8.162933	0.931733	13.509100	7.659850	0.626850	NaN	NaN	NaN	15.907796	11.842925	1.620124	15.715108	10.401046	0.937066	NaN	NaN	NaN	15.811452	11.121985	0.000000	0.000000	0.000000	0.000000	0.174987	0.122723	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome subunit beta type (Fragment) OS=Homo sapiens GN=PSMB7 PE=2 SV=1	Q5TBG5_HUMAN	Q5TBG5_HUMAN	Proteasome subunit beta type (Fragment) OS=Homo sapiens GN=PSMB7 PE=2 SV=1	100.000000	0.001320	22761.200000	1.000000	1.000000	1.000000	Spectrum23331 scans:25829,	AAVSVYAPPVGGF	A[+42]AVSVYAPPVGGF	M	S	98.500000	50.100000	48.900000	32.100000	Acetyl (+42)	1275.650000	2.000000	0.000430	0.340000	2.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit beta type (Fragment) OS=Homo sapiens GN=PSMB7 PE=2 SV=1	Q5TBG5_HUMAN	Q5TBG5_HUMAN	Proteasome subunit beta type (Fragment) OS=Homo sapiens GN=PSMB7 PE=2 SV=1	100.000000	0.005010	22761.200000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38961.38961.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38961"	AAVSVYAPPVGGFSFDNCR	A[+42]AVSVYAPPVGGFSFDNC[+57]R	M	R	99.600000	58.600000	51.400000	57.900000	Acetyl (+42), Carbamidomethyl (+57)	2054.950000	2.000000	-0.006600	-3.200000	2.000000	20.000000	0.145800	0.299000	1.533600	0.992750	0.599900	0.602950	NaN	NaN	NaN	0.183235	0.433794	2.666667	1.154864	0.814583	0.901338	NaN	NaN	NaN	0.669049	0.624189	0.399827	0.188479	1.000000	0.662637	0.174723	0.122076	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Zinc finger protein ubi-d4 OS=Homo sapiens GN=DPF2 PE=1 SV=2	REQU_HUMAN	REQU_HUMAN	Zinc finger protein ubi-d4 OS=Homo sapiens GN=DPF2 PE=1 SV=2	94.800000	0.002500	44138.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.57081.57081.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=57081"	AAVVENVVKLLGEQY	A[+42]AVVENVVKLLGEQY	M	Y	98.700000	57.900000	57.100000	52.700000	Acetyl (+42), Dimethyl:2H(4) (+32)	1704.970000	2.000000	0.005400	3.200000	2.000000	16.000000	NaN	NaN	NaN	NaN	NaN	1.115050	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.666866	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.032900	28786.800000	10.000000	21.000000	25.000000	Spectrum69309 scans:44187,	AAYKLVLI	NaN	M	R	98.600000	46.800000	45.900000	15.900000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	967.620000	2.000000	-0.000970	-1.000000	2.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.032900	28786.800000	10.000000	21.000000	25.000000	Spectrum58785 scans:31797,	AAYKLVLIR	A[+42]AYKLVLIR	M	H	99.400000	55.800000	46.200000	30.700000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1133.730000	2.000000	0.000380	0.340000	2.000000	10.000000	55.815633	38.287333	0.647533	0.404450	0.454800	1.393900	NaN	NaN	NaN	70.146580	55.547925	1.125949	0.470496	0.617557	2.083713	NaN	NaN	NaN	35.308538	28.082741	0.470069	0.460735	1.000000	1.000000	0.173024	0.119862	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.009330	28786.800000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.53065.53065.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=53065"	AAYKLVLIR	A[+42]AYKLVLIR	M	H	99.500000	62.800000	51.500000	34.900000	Acetyl (+42), Dimethyl (+28)	1115.710000	2.000000	0.000810	0.730000	2.000000	10.000000	55.815633	38.287333	0.647533	0.404450	0.454800	1.393900	NaN	NaN	NaN	70.146580	55.547925	1.125949	0.470496	0.617557	2.083713	NaN	NaN	NaN	35.308538	28.082741	0.470069	0.460735	1.000000	1.000000	0.172895	0.119800	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.023100	28786.800000	5.000000	9.000000	10.000000	Nsco_Tails_biological_replicate_3_fraction6A.31772.31772.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31772"	AAYKLVLIR	A[+42]AYKLVLIR	M	H	99.600000	62.700000	49.800000	39.300000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1125.750000	2.000000	0.000560	0.500000	2.000000	10.000000	55.815633	38.287333	0.647533	0.404450	0.454800	1.393900	NaN	NaN	NaN	70.146580	55.547925	1.125949	0.470496	0.617557	2.083713	NaN	NaN	NaN	35.308538	28.082741	0.470069	0.460735	1.000000	1.000000	0.171867	0.119738	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Galectin-1 OS=Homo sapiens GN=LGALS1 PE=4 SV=1	LEG1_HUMAN	LEG1_HUMAN	Galectin-1 OS=Homo sapiens GN=LGALS1 PE=1 SV=2	97.400000	0.002880	14697.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.29103.29103.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29103"	ACGLVASNLNLKPGECLR	A[+42]C[+57]GLVASNLNLKPGEC[+57]LR	M	V	99.700000	75.000000	57.700000	73.100000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2059.070000	2.000000	-0.002100	-1.000000	2.000000	19.000000	5.078033	2.786867	0.498500	40.998200	41.607350	7.241400	NaN	NaN	NaN	6.381844	4.043234	0.866806	47.693122	56.497182	10.825024	NaN	NaN	NaN	27.037483	30.270208	0.138385	0.255393	0.477331	0.892461	0.171740	0.119490	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1	sp|Q08257|QOR_HUMAN	QOR_HUMAN	Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1	100.000000	0.002310	35189.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.23094.23094.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23094"	ACGVNPVETYIR	A[+28]C[+57]GVNPVETYIR	H	S	99.300000	61.200000	52.800000	44.200000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1415.710000	2.000000	-0.005300	-3.700000	44.000000	55.000000	10.579300	9.815967	1.140033	0.851050	1.422250	6.946750	NaN	NaN	NaN	13.295589	14.241174	1.982322	0.990025	1.931224	10.384558	NaN	NaN	NaN	7.142807	8.086199	0.437178	0.378550	1.000000	1.000000	0.171358	0.119121	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	m7GpppX diphosphatase OS=Homo sapiens GN=DCPS PE=1 SV=2	DCPS_HUMAN	DCPS_HUMAN	m7GpppX diphosphatase OS=Homo sapiens GN=DCPS PE=1 SV=2	100.000000	0.007900	38591.800000	2.000000	4.000000	6.000000	Spectrum27162 scans:8070,	ADAAPQLGKR	A[+42]DAAPQLGKR	M	K	99.400000	58.900000	49.300000	42.200000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1113.630000	2.000000	-0.000240	-0.210000	2.000000	11.000000	311.947233	163.614167	0.524200	9.288150	6.442100	0.685350	61.428757	64.743114	1.760557	392.041263	237.374263	0.911494	10.804886	8.747505	1.024516	41.085347	27.573477	0.843664	147.977166	91.231748	0.000000	0.001893	0.000000	0.006568	0.011505	0.008118	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	m7GpppX diphosphatase OS=Homo sapiens GN=DCPS PE=1 SV=2	DCPS_HUMAN	DCPS_HUMAN	m7GpppX diphosphatase OS=Homo sapiens GN=DCPS PE=1 SV=2	98.500000	0.032300	38591.800000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction5A.8026.8026.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8026"	ADAAPQLGKR	A[+42]DAAPQLGKR	M	K	98.500000	51.100000	53.300000	33.800000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1105.650000	2.000000	0.000150	0.130000	2.000000	11.000000	311.947233	163.614167	0.524200	9.288150	6.442100	0.685350	61.428757	64.743114	1.760557	392.041263	237.374263	0.911494	10.804886	8.747505	1.024516	41.085347	27.573477	0.843664	147.977166	91.231748	0.000000	0.001893	0.000000	0.006529	0.011454	0.008105	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	m7GpppX diphosphatase OS=Homo sapiens GN=DCPS PE=1 SV=2	DCPS_HUMAN	DCPS_HUMAN	m7GpppX diphosphatase OS=Homo sapiens GN=DCPS PE=1 SV=2	100.000000	0.004630	38591.800000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction6A.9639.9639.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9639"	ADAAPQLGKR	A[+42]DAAPQLGKR	M	K	99.600000	63.800000	52.900000	46.300000	Acetyl (+42), Dimethyl (+28)	1095.600000	2.000000	-0.000014	-0.013000	2.000000	11.000000	311.947233	163.614167	0.524200	9.288150	6.442100	0.685350	61.428757	64.743114	1.760557	392.041263	237.374263	0.911494	10.804886	8.747505	1.024516	41.085347	27.573477	0.843664	147.977166	91.231748	0.000000	0.001893	0.000000	0.006484	0.011421	0.008060	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Isoform 2B of Cytoplasmic dynein 1 intermediate chain 2 OS=Homo sapiens GN=DYNC1I2	sp|Q13409-2|DC1I2_HUMAN	DC1I2_HUMAN	Isoform 2B of Cytoplasmic dynein 1 intermediate chain 2 OS=Homo sapiens GN=DYNC1I2	100.000000	0.013200	70625.900000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction2A.3689.3689.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3689"	ADAEEEAATR	A[+28]DAEEEAATR	R	I	99.600000	71.500000	47.300000	48.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1099.510000	2.000000	0.003300	3.000000	620.000000	629.000000	0.418700	0.129700	0.299067	0.453650	0.027850	43.417400	NaN	NaN	NaN	0.526203	0.188171	0.520026	0.527730	0.037817	64.903804	NaN	NaN	NaN	0.526967	0.112994	0.000922	0.373741	0.003156	1.000000	0.166667	0.117607	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2B of Cytoplasmic dynein 1 intermediate chain 2 OS=Homo sapiens GN=DYNC1I2	sp|Q13409|DC1I2_HUMAN	DC1I2_HUMAN	Cytoplasmic dynein 1 intermediate chain 2 OS=Homo sapiens GN=DYNC1I2 PE=1 SV=3	93.200000	0.002330	71437.800000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.10415.10415.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10415"	ADAEEEAATR	A[+28]DAEEEAATR	R	I	99.100000	49.800000	46.800000	32.800000	Dimethyl (+28)	1089.490000	2.000000	-0.000710	-0.650000	626.000000	635.000000	0.418700	0.129700	0.299067	0.453650	0.027850	43.417400	NaN	NaN	NaN	0.526203	0.188171	0.520026	0.527730	0.037817	64.903804	NaN	NaN	NaN	0.526967	0.112994	0.000922	0.373741	0.003144	1.000000	0.166307	0.116953	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum32808 scans:1700,	ADAMAKDR	NaN	R	S	99.000000	37.600000	47.300000	16.000000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	966.490000	3.000000	-0.000410	-0.420000	496.000000	503.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1	SND1_HUMAN	SND1_HUMAN	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1	100.000000	0.006940	101980.500000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction6A.13903.13903.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13903"	ADDADEFGYSR	A[+28]DDADEFGYSR	R	-	99.700000	56.900000	44.100000	37.100000	Dimethyl (+28), Label:13C(6) (+6)	1278.550000	2.000000	-0.000650	-0.510000	900.000000	910.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.029000	31307.200000	7.000000	15.000000	22.000000	Spectrum4708 scans:21847,	ADDAGAAGGPGGPGGPGMGN	A[+42]DDAGAAGGPGGPGGPGM[+16]GN	M	R	99.700000	64.400000	35.300000	59.700000	Acetyl (+42), Oxidation (+16)	1639.650000	2.000000	-0.003700	-2.300000	2.000000	21.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.029000	31307.200000	7.000000	15.000000	22.000000	Spectrum6861 scans:27190,	ADDAGAAGGPGGPGGPGMGN	A[+42]DDAGAAGGPGGPGGPGM[+16]GN	M	R	99.700000	68.200000	36.400000	68.200000	Acetyl (+42)	1623.660000	2.000000	-0.003200	-2.000000	2.000000	21.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.032700	16100.700000	5.000000	11.000000	14.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.64150.64150.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64150"	ADDLDFETGDAGASATFPMQC	A[+42]DDLDFETGDAGASATFPMQC[+57]	M	S	99.700000	57.300000	36.600000	57.300000	Acetyl (+42), Oxidation (+16), Carbamidomethyl (+57)	2275.880000	2.000000	-0.007600	-3.400000	2.000000	22.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.034600	16100.700000	6.000000	12.000000	12.000000	Nsco_Tails_biological_replicate1_apoptosis.38148.38148.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38148"	ADDLDFETGDAGASATFPMQCSALR	A[+42]DDLDFETGDAGASATFPMQC[+57]SALR	M	K	99.700000	79.500000	46.100000	79.500000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2697.150000	2.000000	-0.006500	-2.400000	2.000000	26.000000	1.227400	16.395733	4.749833	0.335700	0.354800	0.926150	NaN	NaN	NaN	1.542541	23.787213	8.259143	0.390519	0.481771	1.384483	NaN	NaN	NaN	0.966530	12.134492	0.342146	0.469353	1.000000	1.000000	0.161998	0.116131	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.032700	16100.700000	5.000000	11.000000	14.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.59711.59711.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=59711"	ADDLDFETGDAGASATFPMQCSALR	A[+42]DDLDFETGDAGASATFPMQC[+57]SALR	M	K	99.700000	102.000000	45.600000	102.000000	Acetyl (+42), Oxidation (+16), Carbamidomethyl (+57)	2703.150000	2.000000	0.002200	0.830000	2.000000	26.000000	1.227400	16.395733	4.749833	0.335700	0.354800	0.926150	NaN	NaN	NaN	1.542541	23.787213	8.259143	0.390519	0.481771	1.384483	NaN	NaN	NaN	0.966530	12.134492	0.342146	0.469353	1.000000	1.000000	0.161320	0.112298	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.032700	16100.700000	5.000000	11.000000	14.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.59862.59862.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=59862"	ADDLDFETGDAGASATFPMQCSALR	A[+42]DDLDFETGDAGASATFPMQC[+57]SALR	M	K	99.700000	99.200000	45.200000	99.200000	Acetyl (+42), Oxidation (+16), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2713.150000	2.000000	-0.006000	-2.200000	2.000000	26.000000	1.227400	16.395733	4.749833	0.335700	0.354800	0.926150	NaN	NaN	NaN	1.542541	23.787213	8.259143	0.390519	0.481771	1.384483	NaN	NaN	NaN	0.966530	12.134492	0.342146	0.469353	1.000000	1.000000	0.160760	0.112243	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.032700	16100.700000	5.000000	11.000000	14.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.63490.63490.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=63490"	ADDLDFETGDAGASATFPMQCSALR	A[+42]DDLDFETGDAGASATFPMQC[+57]SALR	M	K	99.700000	115.000000	45.700000	115.000000	Acetyl (+42), Carbamidomethyl (+57)	2687.140000	2.000000	-0.007000	-2.600000	2.000000	26.000000	1.227400	16.395733	4.749833	0.335700	0.354800	0.926150	NaN	NaN	NaN	1.542541	23.787213	8.259143	0.390519	0.481771	1.384483	NaN	NaN	NaN	0.966530	12.134492	0.342146	0.469353	1.000000	1.000000	0.160314	0.111701	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	m7GpppX diphosphatase OS=Homo sapiens GN=DCPS PE=1 SV=2	DCPS_HUMAN	DCPS_HUMAN	m7GpppX diphosphatase OS=Homo sapiens GN=DCPS PE=1 SV=2	100.000000	0.007900	38591.800000	2.000000	4.000000	6.000000	Spectrum71080 scans:46543,	ADDPLLKLLQEAQQS	A[+28]DDPLLKLLQEAQQS	R	-	99.200000	60.300000	52.700000	51.300000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1727.960000	2.000000	-0.002400	-1.400000	323.000000	337.000000	0.155300	0.102400	0.832200	NaN	NaN	NaN	NaN	NaN	NaN	0.195174	0.148564	1.447053	NaN	NaN	NaN	NaN	NaN	NaN	0.195174	0.148564	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	m7GpppX diphosphatase OS=Homo sapiens GN=DCPS PE=1 SV=2	DCPS_HUMAN	DCPS_HUMAN	m7GpppX diphosphatase OS=Homo sapiens GN=DCPS PE=1 SV=2	100.000000	0.007900	38591.800000	2.000000	4.000000	6.000000	Spectrum71158 scans:46648,	ADDPLLKLLQEAQQS	A[+28]DDPLLKLLQEAQQS	R	-	99.500000	63.000000	52.600000	53.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1731.950000	2.000000	-0.000480	-0.280000	323.000000	337.000000	0.155300	0.102400	0.832200	NaN	NaN	NaN	NaN	NaN	NaN	0.195174	0.148564	1.447053	NaN	NaN	NaN	NaN	NaN	NaN	0.195174	0.148564	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3	ERF1_HUMAN	ERF1_HUMAN	Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3	100.000000	0.017900	49014.600000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.4776.4776.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4776"	ADDPSAADR	A[+42]DDPSAADR	M	N	99.300000	59.300000	42.700000	32.400000	Acetyl (+42)	958.410000	2.000000	0.006100	6.400000	2.000000	10.000000	0.658133	0.253300	0.396767	0.811850	0.593450	0.731250	6.677671	9.055457	1.828143	0.827112	0.367492	0.689909	0.944423	0.805825	1.093131	4.466222	3.856633	0.876051	2.079253	1.676650	0.223727	0.266104	0.732389	0.872760	0.010730	0.007572	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3	ERF1_HUMAN	ERF1_HUMAN	Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3	100.000000	0.017900	49014.600000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.4763.4763.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4763"	ADDPSAADR	A[+42]DDPSAADR	M	N	99.700000	58.900000	42.600000	28.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	968.410000	2.000000	0.000700	0.720000	2.000000	10.000000	0.658133	0.253300	0.396767	0.811850	0.593450	0.731250	6.677671	9.055457	1.828143	0.827112	0.367492	0.689909	0.944423	0.805825	1.093131	4.466222	3.856633	0.876051	2.079253	1.676650	0.223727	0.266104	0.731699	0.871936	0.010722	0.007500	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3	ERF1_HUMAN	ERF1_HUMAN	Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3	100.000000	0.017900	49014.600000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.4837.4837.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4837"	ADDPSAADR	A[+42]DDPSAADR	M	N	99.700000	59.300000	44.200000	32.500000	Acetyl (+42), Label:13C(6) (+6)	964.420000	2.000000	-0.000094	-0.097000	2.000000	10.000000	0.658133	0.253300	0.396767	0.811850	0.593450	0.731250	6.677671	9.055457	1.828143	0.827112	0.367492	0.689909	0.944423	0.805825	1.093131	4.466222	3.856633	0.876051	2.079253	1.676650	0.223727	0.266104	0.731010	0.871114	0.010701	0.007497	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2	LSM3_HUMAN	LSM3_HUMAN	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2	100.000000	0.010500	11827.500000	2.000000	4.000000	8.000000	Spectrum64464 scans:38584,	ADDVDQQQTTNTVEEPLDLIR	A[+42]DDVDQQQTTNTVEEPLDLIR	M	L	99.700000	111.000000	50.200000	105.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	2451.160000	2.000000	-0.005500	-2.200000	2.000000	22.000000	0.500667	0.286500	0.727133	0.807600	0.244400	0.302000	NaN	NaN	NaN	0.629215	0.415659	1.264360	0.939479	0.331862	0.451454	NaN	NaN	NaN	0.784347	0.373761	0.124309	0.071068	0.405789	0.232428	0.156518	0.109897	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2	LSM3_HUMAN	LSM3_HUMAN	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2	100.000000	0.010500	11827.500000	2.000000	4.000000	8.000000	Spectrum64599 scans:38733,	ADDVDQQQTTNTVEEPLDLIR	A[+42]DDVDQQQTTNTVEEPLDLIR	M	L	99.700000	145.000000	50.300000	135.000000	Acetyl (+42)	2441.160000	2.000000	-0.000870	-0.360000	2.000000	22.000000	0.500667	0.286500	0.727133	0.807600	0.244400	0.302000	NaN	NaN	NaN	0.629215	0.415659	1.264360	0.939479	0.331862	0.451454	NaN	NaN	NaN	0.784347	0.373761	0.124309	0.071068	0.405407	0.232209	0.156412	0.109741	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Sorting nexin-27 OS=Homo sapiens GN=SNX27	sp|Q96L92-3|SNX27_HUMAN	SNX27_HUMAN	Isoform 2 of Sorting nexin-27 OS=Homo sapiens GN=SNX27	100.000000	0.001320	59792.200000	1.000000	1.000000	1.000000	Spectrum38700 scans:8541,	ADEDGEGIHPSAPHR	A[+42]DEDGEGIHPSAPHR	M	N	99.700000	35.300000	43.400000	26.200000	Acetyl (+42)	1628.720000	3.000000	0.000570	0.350000	2.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Eukaryotic elongation factor 2 kinase OS=Homo sapiens GN=EEF2K PE=1 SV=2	EF2K_HUMAN	EF2K_HUMAN	Eukaryotic elongation factor 2 kinase OS=Homo sapiens GN=EEF2K PE=1 SV=2	97.700000	0.021500	82127.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction5A.23186.23186.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23186"	ADEDLIFR	A[+42]DEDLIFR	M	L	99.000000	52.000000	49.400000	16.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1029.500000	2.000000	0.000490	0.480000	2.000000	9.000000	1.595400	0.343467	0.212333	0.761050	0.070200	0.100100	NaN	NaN	NaN	2.005027	0.498307	0.369211	0.885328	0.095322	0.149637	NaN	NaN	NaN	1.445177	0.296815	0.235288	0.379673	0.763752	1.000000	0.153812	0.109068	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Eukaryotic elongation factor 2 kinase OS=Homo sapiens GN=EEF2K PE=1 SV=2	EF2K_HUMAN	EF2K_HUMAN	Eukaryotic elongation factor 2 kinase OS=Homo sapiens GN=EEF2K PE=1 SV=2	97.700000	0.021500	82127.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction5A.23157.23157.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23157"	ADEDLIFR	A[+42]DEDLIFR	M	L	99.000000	56.800000	49.100000	34.400000	Acetyl (+42)	1019.490000	2.000000	0.000067	0.066000	2.000000	9.000000	1.595400	0.343467	0.212333	0.761050	0.070200	0.100100	NaN	NaN	NaN	2.005027	0.498307	0.369211	0.885328	0.095322	0.149637	NaN	NaN	NaN	1.445177	0.296815	0.235288	0.379673	0.760904	1.000000	0.153710	0.108812	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1	IPO7_HUMAN	IPO7_HUMAN	Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1	100.000000	0.013400	119501.500000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.30008.30008.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30008"	ADEELWQEDPYEYIR	A[+28]DEELWQEDPYEYIR	D	M	99.700000	73.400000	48.800000	65.800000	Dimethyl (+28)	1982.890000	2.000000	-0.004500	-2.300000	363.000000	377.000000	NaN	1.897333	NaN	0.298950	0.314100	0.917450	NaN	NaN	NaN	NaN	2.752684	NaN	0.347768	0.426506	1.371478	NaN	NaN	NaN	0.347768	1.589595	NaN	0.402139	NaN	1.000000	1.000000	0.108505	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Histidine triad nucleotide-binding protein 1 OS=Homo sapiens GN=HINT1 PE=1 SV=2	HINT1_HUMAN	HINT1_HUMAN	Histidine triad nucleotide-binding protein 1 OS=Homo sapiens GN=HINT1 PE=1 SV=2	100.000000	0.023000	13784.100000	2.000000	4.000000	8.000000	Nsco_Tails_biological_replicate1_apoptosis.14557.14557.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14557"	ADEIAKAQVAR	A[+42]DEIAKAQVAR	M	P	99.700000	71.100000	54.300000	39.200000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1258.710000	2.000000	0.005300	4.200000	2.000000	12.000000	1938.922967	1161.218433	0.586567	64.836200	84.896100	1.099200	NaN	NaN	NaN	2436.751246	1684.715785	1.019939	75.423819	115.277480	1.643172	NaN	NaN	NaN	1256.087532	899.996632	0.000000	0.000000	0.000000	0.000000	0.150608	0.107898	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Histidine triad nucleotide-binding protein 1 OS=Homo sapiens GN=HINT1 PE=1 SV=2	HINT1_HUMAN	HINT1_HUMAN	Histidine triad nucleotide-binding protein 1 OS=Homo sapiens GN=HINT1 PE=1 SV=2	100.000000	0.023000	13784.100000	2.000000	4.000000	8.000000	Nsco_Tails_biological_replicate1_apoptosis.14801.14801.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14801"	ADEIAKAQVAR	A[+42]DEIAKAQVAR	M	P	99.700000	65.800000	54.300000	43.700000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1250.720000	2.000000	-0.001400	-1.100000	2.000000	12.000000	1938.922967	1161.218433	0.586567	64.836200	84.896100	1.099200	NaN	NaN	NaN	2436.751246	1684.715785	1.019939	75.423819	115.277480	1.643172	NaN	NaN	NaN	1256.087532	899.996632	0.000000	0.000000	0.000000	0.000000	0.150510	0.107397	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Histidine triad nucleotide-binding protein 1 OS=Homo sapiens GN=HINT1 PE=1 SV=2	HINT1_HUMAN	HINT1_HUMAN	Histidine triad nucleotide-binding protein 1 OS=Homo sapiens GN=HINT1 PE=1 SV=2	100.000000	0.023000	13784.100000	2.000000	4.000000	8.000000	Nsco_Tails_biological_replicate1_apoptosis.14797.14797.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14797"	ADEIAKAQVAR	A[+42]DEIAKAQVAR	M	P	99.700000	78.200000	53.800000	46.800000	Acetyl (+42), Dimethyl (+28)	1240.680000	2.000000	-0.001900	-1.500000	2.000000	12.000000	1938.922967	1161.218433	0.586567	64.836200	84.896100	1.099200	NaN	NaN	NaN	2436.751246	1684.715785	1.019939	75.423819	115.277480	1.643172	NaN	NaN	NaN	1256.087532	899.996632	0.000000	0.000000	0.000000	0.000000	0.149924	0.105535	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Eukaryotic translation initiation factor 4H OS=Homo sapiens GN=EIF4H PE=1 SV=5	sp|Q15056|IF4H_HUMAN	IF4H_HUMAN	Eukaryotic translation initiation factor 4H OS=Homo sapiens GN=EIF4H PE=1 SV=5	96.700000	0.010800	27368.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.15865.15865.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15865"	ADFDTYDDR	A[+42]DFDTYDDR	M	A	98.600000	46.500000	36.400000	44.300000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1168.450000	2.000000	-0.009600	-8.200000	2.000000	10.000000	0.441633	0.056167	0.127533	0.842700	0.131850	0.153650	NaN	NaN	1.283814	0.555025	0.081488	0.221759	0.980311	0.179035	0.229688	NaN	NaN	0.615207	0.767668	0.130261	0.172030	0.228082	0.550685	0.726761	0.149827	0.101730	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Eukaryotic translation initiation factor 4H OS=Homo sapiens GN=EIF4H PE=1 SV=5	sp|Q15056|IF4H_HUMAN	IF4H_HUMAN	Eukaryotic translation initiation factor 4H OS=Homo sapiens GN=EIF4H PE=1 SV=5	100.000000	0.002330	27368.000000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.38351.38351.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38351"	ADFDTYDDR	A[+42]DFDTYDDR	M	A	99.700000	52.800000	37.000000	52.800000	Acetyl (+42)	1158.450000	2.000000	-0.000770	-0.660000	2.000000	10.000000	0.441633	0.056167	0.127533	0.842700	0.131850	0.153650	NaN	NaN	1.283814	0.555025	0.081488	0.221759	0.980311	0.179035	0.229688	NaN	NaN	0.615207	0.767668	0.130261	0.172030	0.228082	0.550178	0.720149	0.149247	0.101551	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2	sp|Q8TBC4|UBA3_HUMAN	UBA3_HUMAN	NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2	100.000000	0.003950	51835.400000	2.000000	3.000000	3.000000	Spectrum33481 scans:2562,	ADGEEPEKKR	A[+42]DGEEPEKKR	M	R	98.900000	33.600000	49.900000	19.600000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1281.680000	3.000000	0.000940	0.730000	2.000000	11.000000	9.374300	0.826900	0.226900	53.064750	7.965500	0.146150	NaN	NaN	NaN	11.781199	1.199681	0.394540	61.730115	10.816077	0.218477	NaN	NaN	NaN	36.755657	6.007879	0.000000	0.423989	0.000000	1.000000	0.147628	0.101507	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2	sp|Q8TBC4|UBA3_HUMAN	UBA3_HUMAN	NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2	100.000000	0.003950	51835.400000	2.000000	3.000000	3.000000	Spectrum23840 scans:2374,	ADGEEPEKKR	A[+42]DGEEPEKKR	M	R	99.300000	35.000000	50.400000	13.500000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1269.710000	3.000000	-0.000250	-0.200000	2.000000	11.000000	9.374300	0.826900	0.226900	53.064750	7.965500	0.146150	NaN	NaN	NaN	11.781199	1.199681	0.394540	61.730115	10.816077	0.218477	NaN	NaN	NaN	36.755657	6.007879	0.000000	0.423989	0.000000	1.000000	0.147534	0.101462	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Homo sapiens GN=PPP1CB PE=1 SV=3	PP1B_HUMAN	PP1B_HUMAN	Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Homo sapiens GN=PPP1CB PE=1 SV=3	99.600000	0.015800	37170.300000	1.000000	3.000000	12.000000	Spectrum62580 scans:36473,	ADGELNVDSLITR	A[+42]DGELNVDSLITR	M	L	99.700000	100.000000	49.200000	81.500000	Acetyl (+42)	1443.720000	2.000000	-0.000310	-0.210000	2.000000	14.000000	0.619733	0.976000	1.506633	0.881850	0.482250	0.548500	24.842471	10.054643	1.133914	0.778853	1.415998	2.619776	1.025854	0.654831	0.819942	16.615371	4.282177	0.543375	6.140026	2.117668	0.324039	0.195194	1.000000	0.605836	0.009926	0.006909	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Homo sapiens GN=PPP1CB PE=1 SV=3	PP1B_HUMAN	PP1B_HUMAN	Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Homo sapiens GN=PPP1CB PE=1 SV=3	99.600000	0.015800	37170.300000	1.000000	3.000000	12.000000	Spectrum32097 scans:25407,	ADGELNVDSLITR	A[+42]DGELNVDSLITR	M	L	99.700000	104.000000	49.900000	90.900000	Acetyl (+42), Label:13C(6) (+6)	1449.740000	2.000000	-0.001300	-0.880000	2.000000	14.000000	0.619733	0.976000	1.506633	0.881850	0.482250	0.548500	24.842471	10.054643	1.133914	0.778853	1.415998	2.619776	1.025854	0.654831	0.819942	16.615371	4.282177	0.543375	6.140026	2.117668	0.324039	0.195194	1.000000	0.605294	0.009870	0.006903	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Homo sapiens GN=PPP1CB PE=1 SV=3	PP1B_HUMAN	PP1B_HUMAN	Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Homo sapiens GN=PPP1CB PE=1 SV=3	100.000000	0.012500	37170.300000	2.000000	3.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.34831.34831.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34831"	ADGELNVDSLITR	A[+42]DGELNVDSLITR	M	L	99.700000	96.900000	53.200000	88.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1453.730000	2.000000	-0.001100	-0.760000	2.000000	14.000000	0.619733	0.976000	1.506633	0.881850	0.482250	0.548500	24.842471	10.054643	1.133914	0.778853	1.415998	2.619776	1.025854	0.654831	0.819942	16.615371	4.282177	0.543375	6.140026	2.117668	0.324039	0.195194	1.000000	0.604214	0.009864	0.006894	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Kelch domain-containing protein 2 OS=Homo sapiens GN=KLHDC2 PE=4 SV=1	sp|Q9Y2U9-2|KLDC2_HUMAN	KLDC2_HUMAN	Isoform 2 of Kelch domain-containing protein 2 OS=Homo sapiens GN=KLHDC2	96.100000	0.002500	28179.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.7138.7138.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7138"	ADGNEDLR	A[+42]DGNEDLR	M	A	99.000000	45.300000	44.200000	27.000000	Acetyl (+42)	930.400000	2.000000	-0.000140	-0.150000	2.000000	9.000000	0.887467	7.926933	9.350600	0.563950	0.410250	0.714450	NaN	NaN	NaN	1.115328	11.500532	16.259085	0.656042	0.557064	1.068017	NaN	NaN	NaN	0.885685	6.028798	0.161508	0.464573	0.507180	1.000000	0.144583	0.101063	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2	PSMD3_HUMAN	PSMD3_HUMAN	26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2	100.000000	0.013400	60961.600000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.37340.37340.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37340"	ADGQATLLNLLLR	A[+28]DGQATLLNLLLR	D	N	98.600000	54.000000	55.200000	47.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1434.840000	2.000000	-0.000230	-0.160000	244.000000	256.000000	0.545500	0.202200	0.370600	0.809100	0.340750	0.422850	NaN	NaN	NaN	0.685560	0.293355	0.644410	0.941224	0.462693	0.632110	NaN	NaN	NaN	0.813392	0.378024	0.099239	0.140273	0.308014	0.432665	0.143507	0.100014	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2	PSMD3_HUMAN	PSMD3_HUMAN	26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2	100.000000	0.013400	60961.600000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.37336.37336.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37336"	ADGQATLLNLLLR	A[+28]DGQATLLNLLLR	D	N	99.700000	70.900000	55.200000	61.500000	Dimethyl (+28)	1424.830000	2.000000	-0.000510	-0.360000	244.000000	256.000000	0.545500	0.202200	0.370600	0.809100	0.340750	0.422850	NaN	NaN	NaN	0.685560	0.293355	0.644410	0.941224	0.462693	0.632110	NaN	NaN	NaN	0.813392	0.378024	0.099239	0.140273	0.307739	0.431897	0.142622	0.099971	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	RS3A_HUMAN	RS3A_HUMAN	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	100.000000	0.009220	29927.300000	6.000000	7.000000	7.000000	Spectrum8366 scans:31231,	ADGYEPPVQESV	A[+28]DGYEPPVQESV	R	-	99.400000	55.300000	45.100000	40.100000	Dimethyl (+28)	1317.610000	2.000000	-0.001600	-1.200000	253.000000	264.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.039500	29487.900000	8.000000	18.000000	30.000000	Spectrum63414 scans:37411,	ADHQPLTEASYVNLPTIALCNTDSPLR	A[+28]DHQPLTEASYVNLPTIALC[+57]NTDSPLR	R	Y	99.700000	93.200000	54.800000	91.100000	Dimethyl (+28), Carbamidomethyl (+57)	3023.500000	3.000000	-0.002600	-0.870000	129.000000	155.000000	0.531000	0.305200	0.573267	0.635850	0.591850	5.453500	NaN	NaN	NaN	0.667337	0.442789	0.996812	0.739683	0.803653	8.152328	NaN	NaN	NaN	0.703510	0.623221	0.032705	0.179406	0.100876	0.550431	0.140799	0.099799	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.039500	29487.900000	8.000000	18.000000	30.000000	Spectrum63426 scans:37424,	ADHQPLTEASYVNLPTIALCNTDSPLR	A[+28]DHQPLTEASYVNLPTIALC[+57]NTDSPLR	R	Y	99.700000	97.700000	55.400000	88.200000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	3029.520000	3.000000	-0.001500	-0.500000	129.000000	155.000000	0.531000	0.305200	0.573267	0.635850	0.591850	5.453500	NaN	NaN	NaN	0.667337	0.442789	0.996812	0.739683	0.803653	8.152328	NaN	NaN	NaN	0.703510	0.623221	0.032705	0.179406	0.100697	0.548491	0.139357	0.099627	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.007000	29487.900000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.61470.61470.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=61470"	ADHQPLTEASYVNLPTIALCNTDSPLR	A[+28]DHQPLTEASYVNLPTIALC[+57]NTDSPLR	R	Y	98.800000	67.600000	60.200000	67.600000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	3033.520000	3.000000	0.007400	2.400000	129.000000	155.000000	0.531000	0.305200	0.573267	0.635850	0.591850	5.453500	NaN	NaN	NaN	0.667337	0.442789	0.996812	0.739683	0.803653	8.152328	NaN	NaN	NaN	0.703510	0.623221	0.032705	0.179406	0.100430	0.546565	0.139274	0.099541	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Exportin-7 OS=Homo sapiens GN=XPO7 PE=1 SV=3	XPO7_HUMAN	XPO7_HUMAN	Exportin-7 OS=Homo sapiens GN=XPO7 PE=1 SV=3	100.000000	0.008960	123894.800000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.33394.33394.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33394"	ADHVQSLAQLENLCKQLY	A[+42]DHVQSLAQLENLC[+57]KQLY	M	E	99.700000	84.000000	57.200000	80.500000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl (+28)	2199.110000	2.000000	0.005800	2.700000	2.000000	19.000000	1.389200	2.122500	0.859300	13.737100	8.922450	0.631300	NaN	NaN	NaN	1.745884	3.079360	1.494175	15.980340	12.115486	0.943718	NaN	NaN	NaN	8.863112	7.597423	0.389963	0.309828	1.000000	0.940598	0.139190	0.099498	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=3 SV=1	F8W543_HUMAN	F8W543_HUMAN	Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=3 SV=1	96.400000	0.025000	38183.200000	1.000000	3.000000	19.000000	Spectrum30221 scans:16062,	ADIDNLPR	A[+42]DIDNLPR	M	V	98.800000	55.400000	46.200000	30.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	964.490000	2.000000	0.000860	0.890000	2.000000	9.000000	0.787133	0.319433	0.469867	1.316900	0.449600	0.347300	0.872414	0.758400	0.910486	0.989234	0.463439	0.817017	1.531947	0.610496	0.519172	0.583496	0.322995	0.436307	1.034892	0.465644	0.063808	0.030335	0.195080	0.092013	0.009485	0.006772	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=3 SV=1	F8W543_HUMAN	F8W543_HUMAN	Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=3 SV=1	96.400000	0.025000	38183.200000	1.000000	3.000000	19.000000	Spectrum30222 scans:16063,	ADIDNLPR	A[+42]DIDNLPR	M	V	99.000000	59.300000	46.300000	31.300000	Acetyl (+42)	954.480000	2.000000	0.000031	0.033000	2.000000	9.000000	0.787133	0.319433	0.469867	1.316900	0.449600	0.347300	0.872414	0.758400	0.910486	0.989234	0.463439	0.817017	1.531947	0.610496	0.519172	0.583496	0.322995	0.436307	1.034892	0.465644	0.063808	0.030335	0.193714	0.091454	0.009433	0.006769	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=3 SV=1	F8W543_HUMAN	F8W543_HUMAN	Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=3 SV=1	96.400000	0.025000	38183.200000	1.000000	3.000000	19.000000	Spectrum30271 scans:16250,	ADIDNLPR	A[+42]DIDNLPR	M	V	99.000000	63.300000	47.200000	32.600000	Acetyl (+42), Label:13C(6) (+6)	960.500000	2.000000	-0.002300	-2.400000	2.000000	9.000000	0.787133	0.319433	0.469867	1.316900	0.449600	0.347300	0.872414	0.758400	0.910486	0.989234	0.463439	0.817017	1.531947	0.610496	0.519172	0.583496	0.322995	0.436307	1.034892	0.465644	0.063808	0.030335	0.193545	0.091374	0.009394	0.006703	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Polymerase delta-interacting protein 3 OS=Homo sapiens GN=POLDIP3 PE=4 SV=1	Q6R954_HUMAN	Q6R954_HUMAN	Polymerase delta interacting protein 46 OS=Homo sapiens GN=PDIP46 PE=2 SV=1	94.900000	0.004480	20063.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.34479.34479.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34479"	ADISLDELIR	A[+42]DISLDELIR	M	K	98.700000	52.600000	53.100000	35.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1195.630000	2.000000	-0.000100	-0.084000	2.000000	11.000000	0.242300	0.035400	0.145900	0.866750	0.075700	0.086950	NaN	NaN	NaN	0.304512	0.051359	0.253695	1.008288	0.102790	0.129980	NaN	NaN	NaN	0.656400	0.077075	0.313280	0.205013	0.944468	0.616993	0.137127	0.098272	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Thymosin beta-10 OS=Homo sapiens GN=TMSB10 PE=1 SV=2	TYB10_HUMAN	TYB10_HUMAN	Thymosin beta-10 OS=Homo sapiens GN=TMSB10 PE=1 SV=2	99.800000	0.001320	5008.000000	1.000000	1.000000	1.000000	Spectrum51824 scans:23675,	ADKPDMGEIASFDKAK	A[+42]DKPDMGEIASFDKAK	M	L	99.700000	48.600000	52.700000	36.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1871.980000	3.000000	0.003000	1.600000	2.000000	17.000000	71.616500	24.348533	0.341867	0.330800	1.331350	2.013500	NaN	NaN	NaN	90.004399	35.325273	0.594447	0.384819	1.807794	3.009941	NaN	NaN	NaN	45.194609	18.566534	0.475514	0.386142	1.000000	1.000000	0.136641	0.097486	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Kinesin-1 heavy chain OS=Homo sapiens GN=KIF5B PE=1 SV=1	KINH_HUMAN	KINH_HUMAN	Kinesin-1 heavy chain OS=Homo sapiens GN=KIF5B PE=1 SV=1	100.000000	0.008960	109668.300000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.20909.20909.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20909"	ADLAECNIKVMCR	A[+42]DLAEC[+57]NIKVMC[+57]R	M	F	99.600000	57.600000	50.900000	51.600000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl (+28), Carbamidomethyl (+57)	1648.770000	2.000000	-0.003400	-2.100000	2.000000	14.000000	3.372967	5.756033	3.170867	13.414950	26.924750	2.037100	NaN	NaN	NaN	4.238993	8.350953	5.513592	15.605584	36.560187	3.045220	NaN	NaN	NaN	9.922288	22.455570	0.244755	0.057054	0.736600	0.170966	0.136560	0.097445	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Serine/threonine-protein phosphatase OS=Homo sapiens GN=PPP1CC PE=3 SV=1	F8VYE8_HUMAN	F8VYE8_HUMAN	Serine/threonine-protein phosphatase OS=Homo sapiens GN=PPP1CC PE=3 SV=1	99.500000	0.008640	34933.700000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.36867.36867.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36867"	ADLDKLNIDSIIQR	A[+42]DLDKLNIDSIIQR	M	L	98.800000	73.500000	57.000000	38.500000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1692.970000	3.000000	0.001900	1.100000	2.000000	15.000000	28.879233	16.209200	0.533267	471.774350	349.610850	0.756350	NaN	NaN	NaN	36.294123	23.516588	0.927259	548.814134	474.724489	1.130653	NaN	NaN	NaN	292.554128	249.120538	0.000000	0.000000	0.000000	0.000000	0.136319	0.097281	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Serine/threonine-protein phosphatase OS=Homo sapiens GN=PPP1CC PE=3 SV=1	F8VYE8_HUMAN	F8VYE8_HUMAN	Serine/threonine-protein phosphatase OS=Homo sapiens GN=PPP1CC PE=3 SV=1	98.900000	0.012500	34933.700000	1.000000	4.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37549.37549.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37549"	ADLDKLNIDSIIQR	A[+42]DLDKLNIDSIIQR	M	L	99.300000	73.400000	56.800000	45.400000	Acetyl (+42), Dimethyl (+28)	1682.920000	3.000000	0.001100	0.660000	2.000000	15.000000	28.879233	16.209200	0.533267	471.774350	349.610850	0.756350	NaN	NaN	NaN	36.294123	23.516588	0.927259	548.814134	474.724489	1.130653	NaN	NaN	NaN	292.554128	249.120538	0.000000	0.000000	0.000000	0.000000	0.136239	0.097240	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Serine/threonine-protein phosphatase OS=Homo sapiens GN=PPP1CC PE=3 SV=1	F8VYE8_HUMAN	F8VYE8_HUMAN	Serine/threonine-protein phosphatase OS=Homo sapiens GN=PPP1CC PE=3 SV=1	98.900000	0.012500	34933.700000	1.000000	4.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37531.37531.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37531"	ADLDKLNIDSIIQR	A[+42]DLDKLNIDSIIQR	M	L	99.700000	72.600000	57.000000	64.500000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1700.950000	2.000000	0.002300	1.400000	2.000000	15.000000	28.879233	16.209200	0.533267	471.774350	349.610850	0.756350	NaN	NaN	NaN	36.294123	23.516588	0.927259	548.814134	474.724489	1.130653	NaN	NaN	NaN	292.554128	249.120538	0.000000	0.000000	0.000000	0.000000	0.136159	0.096792	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Beta-adrenergic receptor kinase 1 OS=Homo sapiens GN=ADRBK1 PE=1 SV=2	ARBK1_HUMAN	ARBK1_HUMAN	Beta-adrenergic receptor kinase 1 OS=Homo sapiens GN=ADRBK1 PE=1 SV=2	100.000000	0.003950	79558.300000	2.000000	2.000000	3.000000	Spectrum74678 scans:59762,	ADLEAVLADVSYLMAM	A[+42]DLEAVLADVSYLM[+16]AM[+16]	M	E	99.000000	49.700000	46.500000	38.800000	Acetyl (+42), Oxidation (+16), Oxidation (+16)	1784.820000	2.000000	-0.001200	-0.670000	2.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	EFHD2_HUMAN	EFHD2_HUMAN	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	100.000000	0.014500	26680.400000	5.000000	8.000000	11.000000	Spectrum42292 scans:12682,	ADLNQGIGEPQSPSR	A[+28]DLNQGIGEPQSPSR	R	R	99.700000	71.700000	50.300000	60.100000	Dimethyl (+28), Label:13C(6) (+6)	1601.810000	2.000000	-0.003100	-1.900000	63.000000	77.000000	1.861833	NaN	NaN	NaN	0.058250	NaN	NaN	NaN	NaN	2.339868	NaN	NaN	NaN	0.079096	NaN	NaN	NaN	NaN	2.339868	0.079096	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	EFHD2_HUMAN	EFHD2_HUMAN	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	100.000000	0.014500	26680.400000	5.000000	8.000000	11.000000	Spectrum42272 scans:12658,	ADLNQGIGEPQSPSR	A[+28]DLNQGIGEPQSPSR	R	R	99.700000	75.600000	49.600000	59.400000	Dimethyl (+28)	1595.790000	2.000000	-0.000560	-0.350000	63.000000	77.000000	1.861833	NaN	NaN	NaN	0.058250	NaN	NaN	NaN	NaN	2.339868	NaN	NaN	NaN	0.079096	NaN	NaN	NaN	NaN	2.339868	0.079096	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	GDP-L-fucose synthase OS=Homo sapiens GN=TSTA3 PE=1 SV=1	FCL_HUMAN	FCL_HUMAN	GDP-L-fucose synthase OS=Homo sapiens GN=TSTA3 PE=1 SV=1	94.900000	0.002500	35874.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.6348.6348.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6348"	ADLTDTAQTR	A[+28]DLTDTAQTR	D	A	98.700000	49.400000	50.900000	23.700000	Dimethyl (+28)	1118.560000	2.000000	0.001200	1.100000	46.000000	55.000000	0.766600	0.546133	0.712400	0.638650	0.499250	0.788950	NaN	NaN	NaN	0.963428	0.792340	1.238741	0.742940	0.677914	1.179386	NaN	NaN	NaN	0.853184	0.735127	0.081807	0.049446	0.243041	0.146649	0.135204	0.096630	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Adenylyl cyclase-associated protein 1 OS=Homo sapiens GN=CAP1	sp|Q01518|CAP1_HUMAN	CAP1_HUMAN	Adenylyl cyclase-associated protein 1 OS=Homo sapiens GN=CAP1 PE=1 SV=5	98.800000	0.022400	51883.600000	1.000000	6.000000	17.000000	Spectrum23155 scans:14806,	ADMQNLVER	A[+42]DMQNLVER	M	L	99.700000	69.800000	45.800000	43.600000	Acetyl (+42), Oxidation (+16), Label:13C(6) (+6)	1138.540000	2.000000	0.000430	0.370000	2.000000	10.000000	0.569433	0.271467	0.477167	0.675400	0.450200	0.666550	0.732471	1.264057	3.456343	0.715638	0.393849	0.829711	0.785691	0.611311	0.996412	0.489898	0.538350	1.656289	0.663743	0.514503	0.017602	0.015076	0.052250	0.044675	0.009122	0.006586	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Adenylyl cyclase-associated protein 1 OS=Homo sapiens GN=CAP1	sp|Q01518|CAP1_HUMAN	CAP1_HUMAN	Adenylyl cyclase-associated protein 1 OS=Homo sapiens GN=CAP1 PE=1 SV=5	98.800000	0.022400	51883.600000	1.000000	6.000000	17.000000	Spectrum23152 scans:14799,	ADMQNLVER	A[+42]DMQNLVER	M	L	99.700000	90.400000	46.500000	68.300000	Acetyl (+42), Label:13C(6) (+6)	1122.540000	2.000000	0.000360	0.320000	2.000000	10.000000	0.569433	0.271467	0.477167	0.675400	0.450200	0.666550	0.732471	1.264057	3.456343	0.715638	0.393849	0.829711	0.785691	0.611311	0.996412	0.489898	0.538350	1.656289	0.663743	0.514503	0.017602	0.015076	0.052205	0.044637	0.009107	0.006572	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Adenylyl cyclase-associated protein 1 OS=Homo sapiens GN=CAP1	sp|Q01518|CAP1_HUMAN	CAP1_HUMAN	Adenylyl cyclase-associated protein 1 OS=Homo sapiens GN=CAP1 PE=1 SV=5	98.800000	0.022400	51883.600000	1.000000	6.000000	17.000000	Spectrum22906 scans:7968,	ADMQNLVER	A[+42]DMQNLVER	M	L	99.700000	89.600000	44.200000	68.000000	Acetyl (+42), Oxidation (+16)	1132.520000	2.000000	0.000056	0.050000	2.000000	10.000000	0.569433	0.271467	0.477167	0.675400	0.450200	0.666550	0.732471	1.264057	3.456343	0.715638	0.393849	0.829711	0.785691	0.611311	0.996412	0.489898	0.538350	1.656289	0.663743	0.514503	0.017602	0.015076	0.052160	0.044599	0.009044	0.006438	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Adenylyl cyclase-associated protein 1 OS=Homo sapiens GN=CAP1	sp|Q01518|CAP1_HUMAN	CAP1_HUMAN	Adenylyl cyclase-associated protein 1 OS=Homo sapiens GN=CAP1 PE=1 SV=5	98.800000	0.022400	51883.600000	1.000000	6.000000	17.000000	Spectrum23153 scans:14804,	ADMQNLVER	A[+42]DMQNLVER	M	L	99.700000	89.600000	45.300000	68.600000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1126.530000	2.000000	-0.000480	-0.420000	2.000000	10.000000	0.569433	0.271467	0.477167	0.675400	0.450200	0.666550	0.732471	1.264057	3.456343	0.715638	0.393849	0.829711	0.785691	0.611311	0.996412	0.489898	0.538350	1.656289	0.663743	0.514503	0.017602	0.015076	0.052071	0.044447	0.009018	0.006433	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Adenylyl cyclase-associated protein 1 OS=Homo sapiens GN=CAP1	sp|Q01518|CAP1_HUMAN	CAP1_HUMAN	Adenylyl cyclase-associated protein 1 OS=Homo sapiens GN=CAP1 PE=1 SV=5	98.800000	0.022400	51883.600000	1.000000	6.000000	17.000000	Spectrum22311 scans:15006,	ADMQNLVER	A[+42]DMQNLVER	M	L	99.700000	90.100000	45.100000	68.200000	Acetyl (+42)	1116.520000	2.000000	-0.000150	-0.130000	2.000000	10.000000	0.569433	0.271467	0.477167	0.675400	0.450200	0.666550	0.732471	1.264057	3.456343	0.715638	0.393849	0.829711	0.785691	0.611311	0.996412	0.489898	0.538350	1.656289	0.663743	0.514503	0.017602	0.015076	0.052027	0.044372	0.009003	0.006409	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction4A (Nsco_Tails_biological_replicate_3_fraction4A_127088)	Isoform 2 of Adenylyl cyclase-associated protein 1 OS=Homo sapiens GN=CAP1	sp|Q01518|CAP1_HUMAN	CAP1_HUMAN	Adenylyl cyclase-associated protein 1 OS=Homo sapiens GN=CAP1 PE=1 SV=5	99.600000	0.802000	51883.600000	1.000000	6.000000	8.000000	Nsco_Tails_biological_replicate_3_fraction4A.14814.14814.2 File:"Nsco_Tails_biological_replicate_3_fraction4A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14814"	ADMQNLVER	A[+42]DMQNLVER	M	L	99.700000	89.600000	47.700000	65.800000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10)	1142.530000	2.000000	-0.001200	-1.000000	2.000000	10.000000	0.569433	0.271467	0.477167	0.675400	0.450200	0.666550	0.732471	1.264057	3.456343	0.715638	0.393849	0.829711	0.785691	0.611311	0.996412	0.489898	0.538350	1.656289	0.663743	0.514503	0.017602	0.015076	0.051983	0.044334	0.008982	0.006406	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Rap1 GTPase-GDP dissociation stimulator 1 (Fragment) OS=Homo sapiens GN=RAP1GDS1 PE=4 SV=1	D6REZ0_HUMAN	D6REZ0_HUMAN	Rap1 GTPase-GDP dissociation stimulator 1 (Fragment) OS=Homo sapiens GN=RAP1GDS1 PE=4 SV=1	100.000000	0.003950	16842.900000	1.000000	2.000000	3.000000	Spectrum31191 scans:19741,	ADNLSDTLKKLK	A[+42]DNLSDTLKKLK	M	I	99.400000	38.200000	47.800000	28.300000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1482.940000	3.000000	0.002100	1.400000	2.000000	13.000000	19.868967	2.165533	0.114100	59.032600	32.786350	0.651550	NaN	NaN	NaN	24.970424	3.141793	0.198400	68.672503	44.519451	0.973989	NaN	NaN	NaN	46.821463	23.830622	0.000000	0.306204	0.000000	0.899685	0.131365	0.093506	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Rap1 GTPase-GDP dissociation stimulator 1 (Fragment) OS=Homo sapiens GN=RAP1GDS1 PE=4 SV=1	D6REZ0_HUMAN	D6REZ0_HUMAN	Rap1 GTPase-GDP dissociation stimulator 1 (Fragment) OS=Homo sapiens GN=RAP1GDS1 PE=4 SV=1	100.000000	0.003950	16842.900000	1.000000	2.000000	3.000000	Spectrum31186 scans:19728,	ADNLSDTLKKLK	A[+42]DNLSDTLKKLK	M	I	99.700000	44.300000	50.000000	30.400000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1494.910000	3.000000	0.000620	0.420000	2.000000	13.000000	19.868967	2.165533	0.114100	59.032600	32.786350	0.651550	NaN	NaN	NaN	24.970424	3.141793	0.198400	68.672503	44.519451	0.973989	NaN	NaN	NaN	46.821463	23.830622	0.000000	0.306204	0.000000	0.898924	0.131216	0.093393	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	General transcription factor IIE subunit 1 OS=Homo sapiens GN=GTF2E1 PE=1 SV=2	T2EA_HUMAN	T2EA_HUMAN	General transcription factor IIE subunit 1 OS=Homo sapiens GN=GTF2E1 PE=1 SV=2	98.700000	0.005010	49434.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.32114.32114.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32114"	ADPDVLTEVPAALKR	A[+42]DPDVLTEVPAALKR	M	L	98.600000	52.500000	56.900000	41.500000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1681.940000	2.000000	-0.001400	-0.820000	2.000000	16.000000	NaN	NaN	0.257400	96.175400	25.748200	0.262250	NaN	NaN	NaN	NaN	NaN	0.447574	111.880646	34.962591	0.392032	NaN	NaN	NaN	111.880646	34.962591	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	General transcription factor IIE subunit 1 OS=Homo sapiens GN=GTF2E1 PE=1 SV=2	T2EA_HUMAN	T2EA_HUMAN	General transcription factor IIE subunit 1 OS=Homo sapiens GN=GTF2E1 PE=1 SV=2	99.300000	0.010800	49434.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.23881.23881.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23881"	ADPDVLTEVPAALKR	A[+42]DPDVLTEVPAALKR	M	L	99.700000	70.700000	56.700000	53.500000	Acetyl (+42), Dimethyl (+28)	1663.910000	2.000000	-0.009300	-5.600000	2.000000	16.000000	NaN	NaN	0.257400	96.175400	25.748200	0.262250	NaN	NaN	NaN	NaN	NaN	0.447574	111.880646	34.962591	0.392032	NaN	NaN	NaN	111.880646	34.962591	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2	SAE2_HUMAN	SAE2_HUMAN	SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2	100.000000	0.002330	71207.200000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.37015.37015.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37015"	ADPEAAWEPTEAEAR	A[+28]DPEAAWEPTEAEAR	R	A	99.700000	69.600000	49.400000	59.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1679.770000	2.000000	-0.001300	-0.770000	211.000000	225.000000	98.986367	NaN	NaN	6.797250	NaN	0.418550	NaN	NaN	NaN	124.401617	NaN	NaN	7.907227	NaN	0.625682	NaN	NaN	NaN	66.154422	NaN	0.074064	NaN	0.216880	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A	sp|P78559|MAP1A_HUMAN	MAP1A_HUMAN	Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A PE=1 SV=6	99.900000	0.005010	305468.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.11925.11925.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11925"	ADPEGLSSESGR	A[+42]DPEGLSSESGR	M	V	99.000000	42.900000	45.500000	34.000000	Acetyl (+42)	1245.550000	2.000000	-0.000420	-0.340000	2580.000000	2591.000000	0.514033	0.552267	1.368800	0.651150	0.297150	0.468100	NaN	NaN	NaN	0.646014	0.801238	2.380108	0.757481	0.403490	0.699753	NaN	NaN	NaN	0.701748	0.602364	0.050455	0.203011	0.147622	0.593969	0.130402	0.092793	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A	sp|P78559|MAP1A_HUMAN	MAP1A_HUMAN	Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A PE=1 SV=6	99.900000	0.005010	305468.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.11941.11941.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11941"	ADPEGLSSESGR	A[+42]DPEGLSSESGR	M	V	99.200000	45.900000	45.800000	39.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1255.550000	2.000000	-0.002000	-1.600000	2580.000000	2591.000000	0.514033	0.552267	1.368800	0.651150	0.297150	0.468100	NaN	NaN	NaN	0.646014	0.801238	2.380108	0.757481	0.403490	0.699753	NaN	NaN	NaN	0.701748	0.602364	0.050455	0.203011	0.147498	0.593468	0.129744	0.092719	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Zinc finger CCCH-type antiviral protein 1 OS=Homo sapiens GN=ZC3HAV1	sp|Q7Z2W4|ZCCHV_HUMAN	ZCCHV_HUMAN	Zinc finger CCCH-type antiviral protein 1 OS=Homo sapiens GN=ZC3HAV1 PE=1 SV=3	100.000000	0.005010	101414.600000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.49719.49719.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=49719"	ADPEVCCFITKILCAH	A[+42]DPEVC[+57]C[+57]FITKILC[+57]AH	M	G	99.700000	83.800000	52.500000	82.600000	Acetyl (+42), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57)	2010.940000	2.000000	-0.002000	-1.000000	2.000000	17.000000	0.453900	0.266200	0.240500	NaN	NaN	NaN	NaN	NaN	NaN	0.570441	0.386208	0.418188	NaN	NaN	NaN	NaN	NaN	NaN	0.570441	0.386208	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2	SAE2_HUMAN	SAE2_HUMAN	SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2	100.000000	0.002630	71207.200000	2.000000	2.000000	2.000000	Spectrum24227 scans:2947,	ADQEVSPDR	A[+28]DQEVSPDR	D	A	99.000000	49.200000	46.000000	28.000000	Dimethyl (+28), Label:13C(6) (+6)	1049.510000	2.000000	-0.000071	-0.067000	202.000000	210.000000	2.255700	0.106833	0.235233	0.475950	0.345150	0.721900	NaN	NaN	NaN	2.834862	0.154996	0.409030	0.553672	0.468667	1.079154	NaN	NaN	NaN	1.694267	0.311831	0.377209	0.296668	1.000000	0.865074	0.129453	0.092570	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Homo sapiens GN=LYSMD2 PE=1 SV=1	LYSM2_HUMAN	LYSM2_HUMAN	LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Homo sapiens GN=LYSMD2 PE=1 SV=1	96.000000	0.002310	23445.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.21070.21070.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21070"	ADSSPALSLR	A[+42]DSSPALSLR	M	E	99.700000	65.500000	51.300000	51.600000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1067.550000	2.000000	-0.000280	-0.260000	2.000000	11.000000	2.358900	0.559167	0.271967	0.552750	0.262600	0.475650	NaN	NaN	0.810929	2.964560	0.811249	0.472903	0.643013	0.356575	0.711040	NaN	NaN	0.388599	1.803786	0.583912	0.364023	0.236363	1.000000	0.688647	0.129092	0.092533	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of 26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4	sp|P43686|PRS6B_HUMAN	PRS6B_HUMAN	26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2	100.000000	0.001320	47349.700000	1.000000	1.000000	1.000000	Spectrum20694 scans:17604,	ADTLDPALLR	A[+28]DTLDPALLR	R	P	98.900000	56.700000	49.200000	34.100000	Dimethyl (+28)	1111.620000	2.000000	0.000400	0.360000	314.000000	323.000000	1.387000	0.233033	0.201133	0.505750	1.176550	2.248000	NaN	NaN	NaN	1.743119	0.338089	0.349736	0.588338	1.597597	3.360490	NaN	NaN	NaN	1.165729	0.967843	0.292771	0.367235	0.852279	1.000000	0.128447	0.091617	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.040800	82573.600000	11.000000	21.000000	31.000000	Spectrum64996 scans:39171,	ADTQYILPNDIGVSSLDCR	A[+42]DTQYILPNDIGVSSLDC[+57]R	M	E	99.700000	108.000000	50.000000	95.200000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6) (+6)	2184.040000	2.000000	-0.005400	-2.500000	2.000000	20.000000	1.546800	1.037167	0.677700	0.718300	0.555200	0.772950	NaN	NaN	NaN	1.943949	1.504739	1.178404	0.835597	0.753887	1.155468	NaN	NaN	NaN	1.389773	1.129313	0.241553	0.204319	0.701414	0.593296	0.128163	0.091220	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.015000	82573.600000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37411.37411.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37411"	ADTQYILPNDIGVSSLDCR	A[+42]DTQYILPNDIGVSSLDC[+57]R	M	E	99.700000	77.800000	53.100000	66.600000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2188.030000	2.000000	-0.009400	-4.300000	2.000000	20.000000	1.546800	1.037167	0.677700	0.718300	0.555200	0.772950	NaN	NaN	NaN	1.943949	1.504739	1.178404	0.835597	0.753887	1.155468	NaN	NaN	NaN	1.389773	1.129313	0.241553	0.204319	0.700242	0.592305	0.128092	0.087329	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.030100	82573.600000	6.000000	10.000000	13.000000	Nsco_Tails_biological_replicate_3_fraction6A.39305.39305.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39305"	ADTQYILPNDIGVSSLDCR	A[+42]DTQYILPNDIGVSSLDC[+57]R	M	E	99.700000	121.000000	53.400000	110.000000	Acetyl (+42), Carbamidomethyl (+57)	2178.020000	2.000000	-0.001600	-0.750000	2.000000	20.000000	1.546800	1.037167	0.677700	0.718300	0.555200	0.772950	NaN	NaN	NaN	1.943949	1.504739	1.178404	0.835597	0.753887	1.155468	NaN	NaN	NaN	1.389773	1.129313	0.241553	0.204319	0.699657	0.591810	0.127950	0.087263	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Isoform 2 of RING-box protein 2 OS=Homo sapiens GN=RNF7	sp|Q9UBF6-2|RBX2_HUMAN	RBX2_HUMAN	Isoform 2 of RING-box protein 2 OS=Homo sapiens GN=RNF7	99.400000	0.010800	11538.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.14712.14712.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14712"	ADVEDGEETCALASH	A[+42]DVEDGEETC[+57]ALASH	M	S	99.700000	70.600000	39.500000	70.500000	Acetyl (+42), Carbamidomethyl (+57)	1644.660000	2.000000	0.000530	0.320000	2.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein kinase C alpha type OS=Homo sapiens GN=PRKCA PE=1 SV=4	KPCA_HUMAN	KPCA_HUMAN	Protein kinase C alpha type OS=Homo sapiens GN=PRKCA PE=1 SV=4	100.000000	0.010500	76733.100000	1.000000	5.000000	8.000000	Spectrum52022 scans:23917,	ADVFPGNDSTASQDVANR	A[+42]DVFPGNDSTASQDVANR	M	F	99.700000	111.000000	45.900000	0.000000	Acetyl (+42), Label:13C(6) (+6)	1910.870000	2.000000	-0.003600	-1.900000	2.000000	19.000000	0.547800	11.573267	22.638467	0.743250	3.976650	5.369550	NaN	NaN	NaN	0.688450	16.790695	39.364400	0.864621	5.399756	8.026833	NaN	NaN	NaN	0.776536	11.095226	0.071907	0.184800	0.207412	0.533049	0.127036	0.086222	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein kinase C alpha type OS=Homo sapiens GN=PRKCA PE=1 SV=4	KPCA_HUMAN	KPCA_HUMAN	Protein kinase C alpha type OS=Homo sapiens GN=PRKCA PE=1 SV=4	100.000000	0.010500	76733.100000	1.000000	5.000000	8.000000	Spectrum51959 scans:23840,	ADVFPGNDSTASQDVANR	A[+42]DVFPGNDSTASQDVANR	M	F	99.700000	111.000000	44.900000	0.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1914.860000	2.000000	-0.002600	-1.400000	2.000000	19.000000	0.547800	11.573267	22.638467	0.743250	3.976650	5.369550	NaN	NaN	NaN	0.688450	16.790695	39.364400	0.864621	5.399756	8.026833	NaN	NaN	NaN	0.776536	11.095226	0.071907	0.184800	0.207240	0.532606	0.126619	0.085647	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Protein kinase C alpha type OS=Homo sapiens GN=PRKCA PE=1 SV=4	KPCA_HUMAN	KPCA_HUMAN	Protein kinase C alpha type OS=Homo sapiens GN=PRKCA PE=1 SV=4	98.200000	0.007000	76733.100000	1.000000	2.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.41771.41771.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41771"	ADVFPGNDSTASQDVANR	A[+42]DVFPGNDSTASQDVANR	M	F	99.700000	106.000000	48.200000	0.000000	Acetyl (+42)	1904.850000	2.000000	-0.004700	-2.500000	2.000000	19.000000	0.547800	11.573267	22.638467	0.743250	3.976650	5.369550	NaN	NaN	NaN	0.688450	16.790695	39.364400	0.864621	5.399756	8.026833	NaN	NaN	NaN	0.776536	11.095226	0.071907	0.184800	0.206725	0.531282	0.126550	0.085616	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1	CDC73_HUMAN	CDC73_HUMAN	Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1	97.900000	0.005010	60559.500000	1.000000	1.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37606.37606.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37606"	ADVLSVLR	A[+42]DVLSVLR	M	Q	99.000000	54.300000	51.800000	30.600000	Acetyl (+42)	913.530000	2.000000	0.002100	2.300000	2.000000	9.000000	0.745300	1.922100	2.098150	0.983150	0.237650	0.246900	NaN	NaN	NaN	0.936660	2.788616	3.648322	1.143696	0.322697	0.369086	NaN	NaN	NaN	1.040178	1.555656	0.063148	0.426657	0.179170	1.000000	0.126481	0.085584	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Chromatin accessibility complex protein 1 OS=Homo sapiens GN=CHRAC1 PE=1 SV=1	CHRC1_HUMAN	CHRC1_HUMAN	Chromatin accessibility complex protein 1 OS=Homo sapiens GN=CHRAC1 PE=1 SV=1	98.400000	0.002630	14693.000000	1.000000	2.000000	2.000000	Spectrum38599 scans:8420,	ADVVVGKDKGGEQR	A[+42]DVVVGKDKGGEQR	M	L	99.600000	40.200000	51.500000	27.400000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1568.910000	3.000000	0.000130	0.083000	2.000000	15.000000	6.985200	3.493000	0.486100	NaN	NaN	0.438350	NaN	NaN	NaN	8.778685	5.067705	0.845244	NaN	NaN	0.655281	NaN	NaN	NaN	8.778685	5.067705	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Chromatin accessibility complex protein 1 OS=Homo sapiens GN=CHRAC1 PE=1 SV=1	E5RGS9_HUMAN	E5RGS9_HUMAN	Chromatin accessibility complex protein 1 OS=Homo sapiens GN=CHRAC1 PE=4 SV=1	98.400000	0.002630	6246.500000	1.000000	2.000000	2.000000	Spectrum38609 scans:8432,	ADVVVGKDKGGEQR	A[+42]DVVVGKDKGGEQR	M	L	99.400000	37.900000	52.000000	25.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1580.870000	3.000000	-0.000630	-0.400000	2.000000	15.000000	6.985200	3.493000	0.486100	NaN	NaN	0.438350	NaN	NaN	NaN	8.778685	5.067705	0.845244	NaN	NaN	0.655281	NaN	NaN	NaN	8.778685	5.067705	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform 3 of Cytosolic phospholipase A2 beta OS=Homo sapiens GN=PLA2G4B	sp|P0C869-8|PA24B_HUMAN	PA24B_HUMAN	Isoform 3 of Cytosolic phospholipase A2 beta OS=Homo sapiens GN=PLA2G4B	90.000000	0.002310	100077.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.27181.27181.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27181"	AEAALEAVR	A[+42]EAALEAVR	M	S	99.300000	58.600000	51.800000	15.300000	Acetyl (+42), Label:13C(6) (+6)	976.530000	2.000000	-0.000130	-0.130000	2.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3	sp|Q96JB2-2|COG3_HUMAN	COG3_HUMAN	Isoform 2 of Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3	98.900000	0.005010	50523.200000	1.000000	1.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.47315.47315.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47315"	AEAALLLLPEAAAER	A[+42]EAALLLLPEAAAER	M	D	99.700000	70.900000	56.200000	40.800000	Acetyl (+42)	1578.860000	2.000000	0.000420	0.270000	2.000000	16.000000	0.704800	0.109100	0.154800	0.365100	0.218100	0.598750	NaN	NaN	NaN	0.885761	0.158284	0.269171	0.424720	0.296150	0.895059	NaN	NaN	NaN	0.655241	0.227217	0.215360	0.187519	0.607067	0.528588	0.125452	0.082796	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Protein phosphatase 1 regulatory subunit 11 OS=Homo sapiens GN=PPP1R11 PE=1 SV=1	PP1RB_HUMAN	PP1RB_HUMAN	Protein phosphatase 1 regulatory subunit 11 OS=Homo sapiens GN=PPP1R11 PE=1 SV=1	97.400000	0.008640	13934.000000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.33721.33721.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33721"	AEAGAGLSETVTETTVTVTTEPENR	A[+42]EAGAGLSETVTETTVTVTTEPENR	M	S	99.700000	133.000000	55.000000	131.000000	Acetyl (+42)	2604.230000	3.000000	-0.011000	-4.100000	2.000000	26.000000	0.693467	0.225400	0.326300	0.712500	0.370250	0.519650	NaN	NaN	NaN	0.871518	0.327014	0.567380	0.828850	0.502750	0.776814	NaN	NaN	NaN	0.850184	0.414882	0.015972	0.132866	0.044985	0.374225	0.125248	0.082767	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein phosphatase 1 regulatory subunit 11 OS=Homo sapiens GN=PPP1R11 PE=1 SV=1	PP1RB_HUMAN	PP1RB_HUMAN	Protein phosphatase 1 regulatory subunit 11 OS=Homo sapiens GN=PPP1R11 PE=1 SV=1	98.800000	0.011900	13934.000000	1.000000	3.000000	9.000000	Spectrum32037 scans:24873,	AEAGAGLSETVTETTVTVTTEPENR	A[+42]EAGAGLSETVTETTVTVTTEPENR	M	S	99.700000	107.000000	51.700000	99.800000	Acetyl (+42), Label:13C(6) (+6)	2610.250000	3.000000	-0.006600	-2.500000	2.000000	26.000000	0.693467	0.225400	0.326300	0.712500	0.370250	0.519650	NaN	NaN	NaN	0.871518	0.327014	0.567380	0.828850	0.502750	0.776814	NaN	NaN	NaN	0.850184	0.414882	0.015972	0.132866	0.044876	0.373316	0.124910	0.081859	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein phosphatase 1 regulatory subunit 11 OS=Homo sapiens GN=PPP1R11 PE=1 SV=1	PP1RB_HUMAN	PP1RB_HUMAN	Protein phosphatase 1 regulatory subunit 11 OS=Homo sapiens GN=PPP1R11 PE=1 SV=1	98.800000	0.011900	13934.000000	1.000000	3.000000	9.000000	Spectrum32034 scans:24859,	AEAGAGLSETVTETTVTVTTEPENR	A[+42]EAGAGLSETVTETTVTVTTEPENR	M	S	99.700000	126.000000	51.300000	118.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	2614.250000	3.000000	-0.000150	-0.059000	2.000000	26.000000	0.693467	0.225400	0.326300	0.712500	0.370250	0.519650	NaN	NaN	NaN	0.871518	0.327014	0.567380	0.828850	0.502750	0.776814	NaN	NaN	NaN	0.850184	0.414882	0.015972	0.132866	0.044839	0.373014	0.124775	0.081830	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 3 of Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ARAP1	sp|Q96P48-3|ARAP1_HUMAN	ARAP1_HUMAN	Isoform 3 of Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ARAP1	98.900000	0.005010	160977.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.47607.47607.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47607"	AEAGDAALSVAEWLR	A[+42]EAGDAALSVAEWLR	M	A	99.700000	92.900000	53.300000	74.200000	Acetyl (+42)	1599.790000	2.000000	-0.000820	-0.510000	2.000000	16.000000	0.263000	0.794900	3.022700	0.694850	0.243350	0.377400	NaN	NaN	NaN	0.330527	1.153255	5.255955	0.808318	0.330437	0.564168	NaN	NaN	NaN	0.569422	0.741846	0.252889	0.322352	0.709398	0.904253	0.124172	0.081570	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor Tu, mitochondrial OS=Homo sapiens GN=TUFM PE=1 SV=2	EFTU_HUMAN	EFTU_HUMAN	Elongation factor Tu, mitochondrial OS=Homo sapiens GN=TUFM PE=1 SV=2	100.000000	0.003950	49524.300000	3.000000	3.000000	3.000000	Spectrum48526 scans:19861,	AEAGDNLGALVR	A[+28]EAGDNLGALVR	R	G	99.700000	72.000000	49.600000	41.600000	Dimethyl (+28)	1212.650000	2.000000	-0.000520	-0.430000	316.000000	327.000000	0.438567	0.600467	1.844100	4.149850	0.618150	1.534700	NaN	NaN	NaN	0.551171	0.871167	3.206573	4.827512	0.839365	2.294192	NaN	NaN	NaN	2.689341	0.855266	0.427629	0.011835	1.000000	0.033172	0.124106	0.081542	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	sp|P29401-2|TKT_HUMAN	TKT_HUMAN	Isoform 2 of Transketolase OS=Homo sapiens GN=TKT	100.000000	0.037400	0.000000	4.000000	8.000000	13.000000	Nsco_Tails_biological_replicate1_apoptosis.40539.40539.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40539"	AEAGFLAEAELLNLR	A[+28]EAGFLAEAELLNLR	W	K	99.700000	68.300000	56.400000	51.900000	Dimethyl (+28)	1643.890000	2.000000	-0.000270	-0.160000	0.000000	0.000000	0.402800	0.258200	0.563700	0.550750	1.600000	3.089700	NaN	NaN	NaN	0.506221	0.374601	0.980177	0.640686	2.172585	4.618731	NaN	NaN	NaN	0.573454	1.273593	0.074299	0.391302	0.208086	1.000000	0.123973	0.081513	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 2 of Polyamine-modulated factor 1 OS=Homo sapiens GN=PMF1	sp|Q6P1K2-2|PMF1_HUMAN	PMF1_HUMAN	Isoform 2 of Polyamine-modulated factor 1 OS=Homo sapiens GN=PMF1	91.600000	0.002360	22927.400000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.20758.20758.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20758"	AEASSANLGSGCEEKR	A[+42]EASSANLGSGC[+57]EEKR	M	H	98.800000	51.900000	49.200000	51.300000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl (+28)	1734.790000	2.000000	0.001100	0.660000	2.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	SRSF2_HUMAN	SRSF2_HUMAN	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	100.000000	0.012500	25459.100000	3.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.27389.27389.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27389"	AEDAMDAMDGAVLDGR	A[+28]EDAMDAM[+16]DGAVLDGR	D	E	99.700000	67.900000	43.600000	14.500000	Dimethyl (+28), Oxidation (+16)	1679.710000	2.000000	-0.007900	-4.700000	68.000000	83.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	SRSF2_HUMAN	SRSF2_HUMAN	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	100.000000	0.026900	25459.100000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.23800.23800.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23800"	AEDAMDAMDGAVLDGR	A[+28]EDAMDAM[+16]DGAVLDGR	D	E	99.700000	79.400000	45.600000	79.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1673.720000	2.000000	-0.004200	-2.500000	68.000000	83.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	SRSF2_HUMAN	SRSF2_HUMAN	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	100.000000	0.026900	25459.100000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.23799.23799.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23799"	AEDAMDAMDGAVLDGR	A[+28]EDAMDAM[+16]DGAVLDGR	D	E	99.700000	94.700000	45.400000	93.600000	Dimethyl (+28)	1663.720000	2.000000	-0.002500	-1.500000	68.000000	83.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3	RS12_HUMAN	RS12_HUMAN	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3	100.000000	0.023000	14496.800000	2.000000	7.000000	8.000000	Nsco_Tails_biological_replicate1_apoptosis.51185.51185.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=51185"	AEEGIAAGGVMDVNTALQEVLKTA	A[+42]EEGIAAGGVMDVNTALQEVLKTA	M	L	99.000000	75.500000	58.300000	75.000000	Acetyl (+42), Oxidation (+16), Dimethyl (+28)	2472.240000	3.000000	-0.000210	-0.083000	2.000000	25.000000	NaN	NaN	0.416800	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.724744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3	RS12_HUMAN	RS12_HUMAN	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3	100.000000	0.023000	14496.800000	2.000000	7.000000	8.000000	Nsco_Tails_biological_replicate1_apoptosis.51201.51201.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=51201"	AEEGIAAGGVMDVNTALQEVLKTA	A[+42]EEGIAAGGVMDVNTALQEVLKTA	M	L	99.200000	79.400000	58.700000	78.300000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36)	2480.260000	3.000000	-0.000250	-0.100000	2.000000	25.000000	NaN	NaN	0.416800	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.724744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3	RS12_HUMAN	RS12_HUMAN	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3	100.000000	0.023000	14496.800000	2.000000	7.000000	8.000000	Nsco_Tails_biological_replicate1_apoptosis.53009.53009.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=53009"	AEEGIAAGGVMDVNTALQEVLKTA	A[+42]EEGIAAGGVMDVNTALQEVLKTA	M	L	99.700000	84.500000	58.700000	80.800000	Acetyl (+42), Dimethyl (+28)	2456.250000	2.000000	0.000160	0.065000	2.000000	25.000000	NaN	NaN	0.416800	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.724744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3	RS12_HUMAN	RS12_HUMAN	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3	100.000000	0.023000	14496.800000	2.000000	7.000000	8.000000	Nsco_Tails_biological_replicate1_apoptosis.55599.55599.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=55599"	AEEGIAAGGVMDVNTALQEVLKTAL	A[+42]EEGIAAGGVMDVNTALQEVLKTAL	M	I	99.000000	78.500000	60.300000	77.800000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	2577.350000	3.000000	0.000410	0.160000	2.000000	26.000000	1402.243500	745.989000	0.526600	NaN	NaN	NaN	NaN	NaN	NaN	1762.276612	1082.293742	0.915667	NaN	NaN	NaN	NaN	NaN	NaN	1762.276612	1082.293742	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3	RS12_HUMAN	RS12_HUMAN	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3	100.000000	0.023000	14496.800000	2.000000	7.000000	8.000000	Nsco_Tails_biological_replicate1_apoptosis.55604.55604.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=55604"	AEEGIAAGGVMDVNTALQEVLKTAL	A[+42]EEGIAAGGVMDVNTALQEVLKTAL	M	I	99.700000	88.500000	60.000000	88.500000	Acetyl (+42), Dimethyl (+28)	2569.330000	2.000000	0.001400	0.560000	2.000000	26.000000	1402.243500	745.989000	0.526600	NaN	NaN	NaN	NaN	NaN	NaN	1762.276612	1082.293742	0.915667	NaN	NaN	NaN	NaN	NaN	NaN	1762.276612	1082.293742	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3	RS12_HUMAN	RS12_HUMAN	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3	100.000000	0.007510	14496.800000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.56620.56620.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=56620"	AEEGIAAGGVMDVNTALQEVLKTAL	A[+42]EEGIAAGGVMDVNTALQEVLKTAL	M	I	99.700000	104.000000	59.800000	104.000000	Acetyl (+42), Oxidation (+16), Dimethyl (+28)	2585.330000	2.000000	0.002500	0.980000	2.000000	26.000000	1402.243500	745.989000	0.526600	NaN	NaN	NaN	NaN	NaN	NaN	1762.276612	1082.293742	0.915667	NaN	NaN	NaN	NaN	NaN	NaN	1762.276612	1082.293742	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3	RS12_HUMAN	RS12_HUMAN	40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3	99.900000	0.007000	14496.800000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.64092.64092.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64092"	AEEGIAAGGVMDVNTALQEVLKTAL	A[+42]EEGIAAGGVMDVNTALQEVLKTAL	M	I	99.700000	96.000000	59.900000	95.200000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36)	2593.340000	2.000000	-0.002500	-0.960000	2.000000	26.000000	1402.243500	745.989000	0.526600	NaN	NaN	NaN	NaN	NaN	NaN	1762.276612	1082.293742	0.915667	NaN	NaN	NaN	NaN	NaN	NaN	1762.276612	1082.293742	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=4 SV=1	F8VWK2_HUMAN	F8VWK2_HUMAN	TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=4 SV=1	98.800000	0.002630	10804.600000	1.000000	2.000000	2.000000	Spectrum31342 scans:20459,	AEFLDDQETR	A[+42]EFLDDQETR	M	L	99.700000	61.800000	42.500000	42.400000	Acetyl (+42)	1264.560000	2.000000	-0.000110	-0.086000	2.000000	11.000000	5.941433	6.784200	2.732233	0.759500	0.203650	0.268900	0.527886	1.668057	NaN	7.466926	9.842635	4.750884	0.883525	0.276529	0.401973	0.353065	0.710410	NaN	2.901172	3.609858	0.332433	0.366655	0.919157	1.000000	0.008228	0.005378	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=4 SV=1	F8VWK2_HUMAN	F8VWK2_HUMAN	TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=4 SV=1	98.900000	0.004480	10804.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.23319.23319.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23319"	AEFLDDQETR	A[+42]EFLDDQETR	M	L	99.700000	54.100000	46.300000	44.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1274.560000	2.000000	-0.001200	-0.920000	2.000000	11.000000	5.941433	6.784200	2.732233	0.759500	0.203650	0.268900	0.527886	1.668057	NaN	7.466926	9.842635	4.750884	0.883525	0.276529	0.401973	0.353065	0.710410	NaN	2.901172	3.609858	0.332433	0.366655	0.918426	1.000000	0.008206	0.005273	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of 15 kDa selenoprotein OS=Homo sapiens GN=SEP15	sp|O60613-2|SEP15_HUMAN	SEP15_HUMAN	Isoform 2 of 15 kDa selenoprotein OS=Homo sapiens GN=SEP15	98.100000	0.002630	13201.200000	1.000000	2.000000	2.000000	Spectrum22732 scans:4687,	AEFSSEACR	A[+28]EFSSEAC[+57]R	G	E	99.600000	60.200000	43.100000	42.400000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1089.490000	2.000000	0.000620	0.570000	31.000000	39.000000	26.730833	NaN	0.049000	0.829350	0.513650	0.619600	NaN	NaN	NaN	33.594110	NaN	0.085203	0.964781	0.697468	0.926228	NaN	NaN	NaN	17.279446	0.697468	0.438770	NaN	1.000000	NaN	0.120236	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15	sp|Q9Y4E8|UBP15_HUMAN	UBP15_HUMAN	Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15 PE=1 SV=3	98.900000	0.006590	112405.300000	1.000000	3.000000	5.000000	Spectrum28126 scans:9954,	AEGGAADLDTQR	A[+42]EGGAADLDTQR	M	S	99.700000	77.700000	45.300000	58.300000	Acetyl (+42), Label:13C(6) (+6)	1250.580000	2.000000	-0.000940	-0.750000	2.000000	13.000000	0.496167	0.996367	1.940467	0.669850	0.409100	0.596500	38.965914	5.489543	1.085800	0.623560	1.445546	3.374138	0.779235	0.555503	0.891696	26.061542	2.337944	0.520318	9.154779	1.446331	0.344914	0.106691	0.951391	0.290594	0.008172	0.005268	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15	sp|Q9Y4E8|UBP15_HUMAN	UBP15_HUMAN	Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15 PE=1 SV=3	98.900000	0.006590	112405.300000	1.000000	3.000000	5.000000	Spectrum22899 scans:7819,	AEGGAADLDTQR	A[+42]EGGAADLDTQR	M	S	99.700000	85.500000	44.000000	58.400000	Acetyl (+42)	1244.560000	2.000000	-0.001100	-0.860000	2.000000	13.000000	0.496167	0.996367	1.940467	0.669850	0.409100	0.596500	38.965914	5.489543	1.085800	0.623560	1.445546	3.374138	0.779235	0.555503	0.891696	26.061542	2.337944	0.520318	9.154779	1.446331	0.344914	0.106691	0.949881	0.290366	0.008168	0.005266	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15	sp|Q9Y4E8|UBP15_HUMAN	UBP15_HUMAN	Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15 PE=1 SV=3	98.900000	0.006590	112405.300000	1.000000	3.000000	5.000000	Spectrum22900 scans:7826,	AEGGAADLDTQR	A[+42]EGGAADLDTQR	M	S	99.700000	85.600000	44.400000	63.600000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1254.570000	2.000000	-0.000300	-0.240000	2.000000	13.000000	0.496167	0.996367	1.940467	0.669850	0.409100	0.596500	38.965914	5.489543	1.085800	0.623560	1.445546	3.374138	0.779235	0.555503	0.891696	26.061542	2.337944	0.520318	9.154779	1.446331	0.344914	0.106691	0.949128	0.290138	0.008164	0.005251	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Bridging integrator 2 OS=Homo sapiens GN=BIN2 PE=1 SV=3	sp|Q9UBW5|BIN2_HUMAN	BIN2_HUMAN	Bridging integrator 2 OS=Homo sapiens GN=BIN2 PE=1 SV=3	100.000000	0.008960	61856.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.16524.16524.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16524"	AEGKAGGAAGLFAK	A[+42]EGKAGGAAGLFAK	M	Q	98.800000	55.000000	54.800000	41.900000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	1344.740000	2.000000	-0.000290	-0.220000	2.000000	15.000000	0.484400	0.423167	0.719000	2.390700	1.744800	0.398900	NaN	NaN	1.649971	0.608772	0.613938	1.250217	2.781096	2.369204	0.596308	NaN	NaN	0.790671	1.694934	1.491571	0.362810	0.338582	0.997584	0.920030	0.119676	0.076727	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Bridging integrator 2 OS=Homo sapiens GN=BIN2 PE=1 SV=3	sp|Q9UBW5|BIN2_HUMAN	BIN2_HUMAN	Bridging integrator 2 OS=Homo sapiens GN=BIN2 PE=1 SV=3	100.000000	0.008960	61856.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.16533.16533.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16533"	AEGKAGGAAGLFAK	A[+42]EGKAGGAAGLFAK	M	Q	99.700000	82.400000	55.100000	75.800000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1360.770000	2.000000	-0.001500	-1.100000	2.000000	15.000000	0.484400	0.423167	0.719000	2.390700	1.744800	0.398900	NaN	NaN	1.649971	0.608772	0.613938	1.250217	2.781096	2.369204	0.596308	NaN	NaN	0.790671	1.694934	1.491571	0.362810	0.338582	0.995218	0.919310	0.119429	0.076702	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2	PDIA4_HUMAN	PDIA4_HUMAN	Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2	100.000000	0.018400	72916.000000	3.000000	7.000000	14.000000	Spectrum23812 scans:2314,	AEGPDEDSSNR	A[+28]EGPDEDSSNR	G	E	99.700000	91.200000	38.900000	71.700000	Dimethyl (+28)	1203.500000	2.000000	-0.000120	-0.100000	24.000000	34.000000	NaN	0.392867	NaN	0.838650	0.680300	0.811200	NaN	NaN	NaN	NaN	0.569978	NaN	0.975600	0.923756	1.212647	NaN	NaN	NaN	0.975600	0.746867	NaN	0.148050	NaN	0.399482	1.000000	0.076677	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2	PDIA4_HUMAN	PDIA4_HUMAN	Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2	100.000000	0.007510	72916.000000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.2299.2299.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2299"	AEGPDEDSSNR	A[+28]EGPDEDSSNR	G	E	99.700000	80.100000	44.600000	60.300000	Dimethyl (+28), Label:13C(6) (+6)	1209.530000	2.000000	0.004800	4.000000	24.000000	34.000000	NaN	0.392867	NaN	0.838650	0.680300	0.811200	NaN	NaN	NaN	NaN	0.569978	NaN	0.975600	0.923756	1.212647	NaN	NaN	NaN	0.975600	0.746867	NaN	0.148050	NaN	0.399171	1.000000	0.076651	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2	PDIA4_HUMAN	PDIA4_HUMAN	Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2	100.000000	0.017900	72916.000000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.2473.2473.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2473"	AEGPDEDSSNR	A[+28]EGPDEDSSNR	G	E	99.700000	72.700000	42.400000	63.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1213.510000	2.000000	-0.000730	-0.600000	24.000000	34.000000	NaN	0.392867	NaN	0.838650	0.680300	0.811200	NaN	NaN	NaN	NaN	0.569978	NaN	0.975600	0.923756	1.212647	NaN	NaN	NaN	0.975600	0.746867	NaN	0.148050	NaN	0.398861	1.000000	0.076626	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 3 of MOB-like protein phocein OS=Homo sapiens GN=MOB4	sp|Q9Y3A3-3|PHOCN_HUMAN	PHOCN_HUMAN	Isoform 3 of MOB-like protein phocein OS=Homo sapiens GN=MOB4	91.300000	0.002880	23494.900000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.13667.13667.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13667"	AEGTAVLR	A[+42]EGTAVLR	M	R	99.000000	62.300000	51.100000	34.100000	Acetyl (+42)	857.460000	2.000000	0.002900	3.300000	4.000000	11.000000	0.758867	2.536300	4.301633	0.757850	0.623050	0.858400	0.830757	1.050314	4.392271	0.953710	3.679708	7.479801	0.881605	0.846018	1.283205	0.555635	0.447319	2.104788	0.796983	1.657682	0.022804	0.244845	0.062062	0.659124	0.008109	0.005223	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Isoform 3 of MOB-like protein phocein OS=Homo sapiens GN=MOB4	sp|Q9Y3A3|PHOCN_HUMAN	PHOCN_HUMAN	MOB-like protein phocein OS=Homo sapiens GN=MOB4 PE=1 SV=1	97.700000	0.010800	26014.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.11397.11397.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11397"	AEGTAVLR	A[+42]EGTAVLR	M	R	99.000000	67.100000	51.500000	37.200000	Acetyl (+42), Label:13C(6) (+6)	863.480000	2.000000	0.000390	0.450000	4.000000	11.000000	0.758867	2.536300	4.301633	0.757850	0.623050	0.858400	0.830757	1.050314	4.392271	0.953710	3.679708	7.479801	0.881605	0.846018	1.283205	0.555635	0.447319	2.104788	0.796983	1.657682	0.022804	0.244845	0.062013	0.658103	0.008105	0.005219	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine/threonine-protein phosphatase 4 catalytic subunit OS=Homo sapiens GN=PPP4C PE=4 SV=1	H3BPN5_HUMAN	H3BPN5_HUMAN	Serine/threonine-protein phosphatase 4 catalytic subunit OS=Homo sapiens GN=PPP4C PE=4 SV=1	99.700000	0.011900	5563.500000	1.000000	3.000000	9.000000	Spectrum23085 scans:12832,	AEISDLDR	A[+42]EISDLDR	M	Q	99.000000	68.200000	45.900000	37.100000	Acetyl (+42), Label:13C(6) (+6)	965.480000	2.000000	0.000082	0.085000	2.000000	9.000000	0.878433	1.629633	3.888833	0.690200	0.382100	0.553550	3.151829	1.561971	2.757986	1.103976	2.364300	6.762012	0.802908	0.518840	0.827491	2.108035	0.665229	1.321634	1.338306	1.182790	0.077011	0.183904	0.209262	0.492397	0.008101	0.005218	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine/threonine-protein phosphatase 4 catalytic subunit OS=Homo sapiens GN=PPP4C PE=4 SV=1	H3BPN5_HUMAN	H3BPN5_HUMAN	Serine/threonine-protein phosphatase 4 catalytic subunit OS=Homo sapiens GN=PPP4C PE=4 SV=1	99.700000	0.011900	5563.500000	1.000000	3.000000	9.000000	Spectrum30166 scans:15847,	AEISDLDR	A[+42]EISDLDR	M	Q	99.000000	67.500000	45.100000	36.700000	Acetyl (+42), Label:13C(6)15N(4) (+10)	969.460000	2.000000	-0.001500	-1.500000	2.000000	9.000000	0.878433	1.629633	3.888833	0.690200	0.382100	0.553550	3.151829	1.561971	2.757986	1.103976	2.364300	6.762012	0.802908	0.518840	0.827491	2.108035	0.665229	1.321634	1.338306	1.182790	0.077011	0.183904	0.209098	0.492017	0.008093	0.005216	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Serine/threonine-protein phosphatase 4 catalytic subunit OS=Homo sapiens GN=PPP4C PE=4 SV=1	H3BPN5_HUMAN	H3BPN5_HUMAN	Serine/threonine-protein phosphatase 4 catalytic subunit OS=Homo sapiens GN=PPP4C PE=4 SV=1	97.700000	0.032300	5563.500000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction5A.15843.15843.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15843"	AEISDLDR	A[+42]EISDLDR	M	Q	99.000000	66.900000	48.400000	35.800000	Acetyl (+42)	959.460000	2.000000	-0.001100	-1.100000	2.000000	9.000000	0.878433	1.629633	3.888833	0.690200	0.382100	0.553550	3.151829	1.561971	2.757986	1.103976	2.364300	6.762012	0.802908	0.518840	0.827491	2.108035	0.665229	1.321634	1.338306	1.182790	0.077011	0.183904	0.207475	0.490504	0.008089	0.005207	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxycytidine kinase OS=Homo sapiens GN=DCK PE=4 SV=1	D6RFG8_HUMAN	D6RFG8_HUMAN	Deoxycytidine kinase OS=Homo sapiens GN=DCK PE=4 SV=1	100.000000	0.005270	36747.300000	2.000000	4.000000	4.000000	Spectrum52736 scans:24710,	AEKPVLFFER	A[+28]EKPVLFFER	D	S	99.700000	52.000000	49.600000	0.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1300.780000	3.000000	-0.000430	-0.330000	119.000000	128.000000	9.324900	8.191367	1.223100	22.632600	16.083550	0.742500	NaN	NaN	NaN	11.719115	11.884176	2.126761	26.328457	21.839297	1.109948	NaN	NaN	NaN	19.023786	16.861737	0.000000	0.000000	0.000000	0.000000	0.118269	0.076348	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxycytidine kinase OS=Homo sapiens GN=DCK PE=4 SV=1	DCK_HUMAN	DCK_HUMAN	Deoxycytidine kinase OS=Homo sapiens GN=DCK PE=1 SV=1	100.000000	0.005270	30501.300000	2.000000	4.000000	4.000000	Spectrum52734 scans:24708,	AEKPVLFFER	A[+28]EKPVLFFER	D	S	99.600000	47.000000	50.300000	29.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1308.760000	3.000000	0.002300	1.800000	119.000000	128.000000	9.324900	8.191367	1.223100	22.632600	16.083550	0.742500	NaN	NaN	NaN	11.719115	11.884176	2.126761	26.328457	21.839297	1.109948	NaN	NaN	NaN	19.023786	16.861737	0.000000	0.000000	0.000000	0.000000	0.118148	0.076322	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2	GALE_HUMAN	GALE_HUMAN	UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2	100.000000	0.013900	38264.000000	3.000000	5.000000	6.000000	Nsco_Tails_biological_replicate_3_fraction6A.26634.26634.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26634"	AEKVLVTGGAGY	A[+42]EKVLVTGGAGY	M	I	99.700000	73.700000	53.600000	54.600000	Acetyl (+42), Dimethyl (+28)	1233.660000	2.000000	0.000800	0.650000	2.000000	13.000000	0.627133	3.114733	8.130000	1.449850	0.471250	0.591800	NaN	NaN	NaN	0.788153	4.518909	14.136672	1.686608	0.639894	0.884670	NaN	NaN	NaN	1.237380	2.579402	0.221703	0.410448	0.593603	1.000000	0.118087	0.076297	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2	GALE_HUMAN	GALE_HUMAN	UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2	100.000000	0.006590	38264.000000	2.000000	4.000000	5.000000	Spectrum54565 scans:26736,	AEKVLVTGGAGYIGSH	A[+42]EKVLVTGGAGYIGSH	M	T	99.700000	116.000000	51.800000	94.200000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1635.870000	2.000000	-0.003300	-2.000000	2.000000	17.000000	3.898933	4.160567	0.844433	30.989350	14.010450	0.436500	NaN	NaN	NaN	4.900004	6.036222	1.468324	36.049847	19.024306	0.652515	NaN	NaN	NaN	20.474926	12.530264	0.209946	0.154265	0.561690	0.408315	0.117967	0.076021	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2	GALE_HUMAN	GALE_HUMAN	UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2	100.000000	0.013900	38264.000000	3.000000	5.000000	6.000000	Nsco_Tails_biological_replicate_3_fraction6A.26747.26747.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26747"	AEKVLVTGGAGYIGSH	A[+42]EKVLVTGGAGYIGSH	M	T	99.700000	89.200000	55.800000	77.800000	Acetyl (+42), Dimethyl (+28)	1627.860000	2.000000	-0.001500	-0.920000	2.000000	17.000000	3.898933	4.160567	0.844433	30.989350	14.010450	0.436500	NaN	NaN	NaN	4.900004	6.036222	1.468324	36.049847	19.024306	0.652515	NaN	NaN	NaN	20.474926	12.530264	0.209946	0.154265	0.559963	0.408004	0.117787	0.075427	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Mitochondrial import inner membrane translocase subunit Tim8 B OS=Homo sapiens GN=TIMM8B PE=4 SV=1	TIM8B_HUMAN	TIM8B_HUMAN	Mitochondrial import inner membrane translocase subunit Tim8 B OS=Homo sapiens GN=TIMM8B PE=1 SV=1	96.100000	0.002360	9325.300000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.42613.42613.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42613"	AELGEADEAELQR	A[+42]ELGEADEAELQR	M	L	99.400000	66.000000	48.000000	58.800000	Acetyl (+42)	1471.670000	2.000000	-0.014000	-9.400000	2.000000	14.000000	0.446267	0.656400	1.240733	0.422450	14.655100	36.522650	NaN	NaN	NaN	0.560848	0.952316	2.157422	0.491435	19.899654	54.596980	NaN	NaN	NaN	0.526142	10.425985	0.041933	0.439556	0.111245	1.000000	0.117727	0.075402	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Mitochondrial import inner membrane translocase subunit Tim8 B OS=Homo sapiens GN=TIMM8B PE=4 SV=1	E9PIR3_HUMAN	E9PIR3_HUMAN	Mitochondrial import inner membrane translocase subunit Tim8 B OS=Homo sapiens GN=TIMM8B PE=4 SV=1	97.700000	0.004670	3430.700000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.41298.41298.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41298"	AELGEADEAELQR	A[+42]ELGEADEAELQR	M	L	99.700000	65.400000	49.600000	59.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1481.690000	2.000000	-0.002100	-1.400000	2.000000	14.000000	0.446267	0.656400	1.240733	0.422450	14.655100	36.522650	NaN	NaN	NaN	0.560848	0.952316	2.157422	0.491435	19.899654	54.596980	NaN	NaN	NaN	0.526142	10.425985	0.041933	0.439556	0.111160	1.000000	0.117547	0.075181	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	DYHC1_HUMAN	DYHC1_HUMAN	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	100.000000	0.009220	532387.600000	5.000000	7.000000	7.000000	Spectrum20000 scans:14442,	AELGEYIR	NaN	R	R	99.000000	53.500000	48.100000	16.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	987.530000	2.000000	0.000230	0.230000	2512.000000	2519.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Abl interactor 1 OS=Homo sapiens GN=ABI1 PE=4 SV=1	sp|Q8IZP0-2|ABI1_HUMAN	ABI1_HUMAN	Isoform 2 of Abl interactor 1 OS=Homo sapiens GN=ABI1	98.100000	0.002500	48661.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.43204.43204.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43204"	AELQMLLEEEIPSGKR	A[+42]ELQM[+16]LLEEEIPSGKR	M	A	99.500000	69.300000	57.600000	58.500000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1946.030000	2.000000	0.010000	5.300000	2.000000	17.000000	3.069200	0.473800	0.130300	NaN	NaN	0.243750	NaN	NaN	NaN	3.857233	0.687397	0.226569	NaN	NaN	0.364377	NaN	NaN	NaN	3.857233	0.687397	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Abl interactor 1 OS=Homo sapiens GN=ABI1 PE=4 SV=1	F5H1G9_HUMAN	F5H1G9_HUMAN	Abl interactor 1 OS=Homo sapiens GN=ABI1 PE=4 SV=1	98.900000	0.008960	43456.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.36248.36248.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36248"	AELQMLLEEEIPSGKR	A[+42]ELQM[+16]LLEEEIPSGKR	M	A	98.500000	69.600000	56.800000	54.700000	Acetyl (+42), Oxidation (+16), Dimethyl (+28)	1927.990000	3.000000	-0.001500	-0.780000	2.000000	17.000000	3.069200	0.473800	0.130300	NaN	NaN	0.243750	NaN	NaN	NaN	3.857233	0.687397	0.226569	NaN	NaN	0.364377	NaN	NaN	NaN	3.857233	0.687397	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of ABI gene family member 3 OS=Homo sapiens GN=ABI3	sp|Q9P2A4|ABI3_HUMAN	ABI3_HUMAN	ABI gene family member 3 OS=Homo sapiens GN=ABI3 PE=1 SV=2	98.900000	0.008960	39017.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.34577.34577.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34577"	AELQQLQEFEIPTGR	A[+42]ELQQLQEFEIPTGR	M	E	99.100000	55.000000	55.400000	49.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1809.910000	2.000000	-0.001900	-1.000000	2.000000	16.000000	0.518900	0.438400	0.844900	0.759350	0.191850	0.252750	NaN	NaN	NaN	0.652130	0.636038	1.469136	0.883350	0.260506	0.377831	NaN	NaN	NaN	0.767740	0.448272	0.095150	0.252524	0.250700	0.662827	0.117072	0.073861	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of ABI gene family member 3 OS=Homo sapiens GN=ABI3	sp|Q9P2A4|ABI3_HUMAN	ABI3_HUMAN	ABI gene family member 3 OS=Homo sapiens GN=ABI3 PE=1 SV=2	98.900000	0.008960	39017.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.34566.34566.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34566"	AELQQLQEFEIPTGR	A[+42]ELQQLQEFEIPTGR	M	E	99.700000	86.000000	55.400000	71.300000	Acetyl (+42)	1799.910000	2.000000	0.002300	1.300000	2.000000	16.000000	0.518900	0.438400	0.844900	0.759350	0.191850	0.252750	NaN	NaN	NaN	0.652130	0.636038	1.469136	0.883350	0.260506	0.377831	NaN	NaN	NaN	0.767740	0.448272	0.095150	0.252524	0.250510	0.662326	0.117012	0.073838	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of UBX domain-containing protein 1 OS=Homo sapiens GN=UBXN1	sp|Q04323-2|UBXN1_HUMAN	UBXN1_HUMAN	Isoform 2 of UBX domain-containing protein 1 OS=Homo sapiens GN=UBXN1	99.900000	0.002630	35089.400000	1.000000	2.000000	2.000000	Spectrum74581 scans:59392,	AELTALESLIEMGFPR	A[+42]ELTALESLIEM[+16]GFPR	M	G	99.700000	94.900000	51.200000	77.100000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10)	1843.920000	2.000000	-0.003700	-2.000000	2.000000	17.000000	0.477800	0.603000	1.371333	0.635050	0.282250	0.473350	NaN	NaN	NaN	0.600478	0.874843	2.384513	0.738752	0.383258	0.707601	NaN	NaN	NaN	0.669615	0.629050	0.065499	0.237138	0.172312	0.621501	0.116717	0.073673	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of UBX domain-containing protein 1 OS=Homo sapiens GN=UBXN1	sp|Q04323-2|UBXN1_HUMAN	UBXN1_HUMAN	Isoform 2 of UBX domain-containing protein 1 OS=Homo sapiens GN=UBXN1	99.800000	0.002330	35089.400000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.64147.64147.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64147"	AELTALESLIEMGFPR	A[+42]ELTALESLIEM[+16]GFPR	M	G	99.700000	91.300000	55.300000	82.200000	Acetyl (+42), Oxidation (+16)	1833.920000	2.000000	0.001600	0.870000	2.000000	17.000000	0.477800	0.603000	1.371333	0.635050	0.282250	0.473350	NaN	NaN	NaN	0.600478	0.874843	2.384513	0.738752	0.383258	0.707601	NaN	NaN	NaN	0.669615	0.629050	0.065499	0.237138	0.172182	0.618233	0.116365	0.073650	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Fragile X mental retardation syndrome-related protein 1 OS=Homo sapiens GN=FXR1 PE=4 SV=1	E9PFF5_HUMAN	E9PFF5_HUMAN	Fragile X mental retardation syndrome-related protein 1 OS=Homo sapiens GN=FXR1 PE=4 SV=1	95.700000	0.007900	55087.800000	1.000000	2.000000	6.000000	Spectrum20645 scans:17259,	AELTVEVR	A[+42]ELTVEVR	M	G	99.000000	73.700000	47.400000	19.500000	Acetyl (+42)	957.510000	2.000000	0.001300	1.300000	2.000000	9.000000	1.019267	0.437600	2.772533	0.530600	0.185450	0.352550	1.086314	1.168557	1.033114	1.280969	0.634878	4.820959	0.617246	0.251816	0.527020	0.726559	0.497677	0.495071	0.874924	0.461457	0.050967	0.054214	0.133879	0.141232	0.007922	0.005020	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Fragile X mental retardation syndrome-related protein 1 OS=Homo sapiens GN=FXR1 PE=4 SV=1	sp|P51114-2|FXR1_HUMAN	FXR1_HUMAN	Isoform 2 of Fragile X mental retardation syndrome-related protein 1 OS=Homo sapiens GN=FXR1	99.700000	0.007510	60773.900000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.22050.22050.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22050"	AELTVEVR	A[+42]ELTVEVR	M	G	99.000000	80.100000	51.600000	42.300000	Acetyl (+42), Label:13C(6)15N(4) (+10)	967.520000	2.000000	0.000020	0.021000	2.000000	9.000000	1.019267	0.437600	2.772533	0.530600	0.185450	0.352550	1.086314	1.168557	1.033114	1.280969	0.634878	4.820959	0.617246	0.251816	0.527020	0.726559	0.497677	0.495071	0.874924	0.461457	0.050967	0.054214	0.133778	0.141126	0.007914	0.005018	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2	LA_HUMAN	LA_HUMAN	Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2	100.000000	0.021500	46821.000000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction5A.8057.8057.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8057"	AENGDNEKMAALEAK	A[+42]ENGDNEKMAALEAK	M	I	99.100000	59.000000	52.700000	56.300000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36)	1719.830000	2.000000	-0.006700	-3.900000	2.000000	16.000000	137.856400	NaN	0.483133	17.431850	51.808250	1.449250	NaN	NaN	NaN	173.251728	NaN	0.840086	20.278435	70.348632	2.166455	NaN	NaN	NaN	96.765082	70.348632	0.000000	NaN	0.000000	NaN	0.116015	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2	LA_HUMAN	LA_HUMAN	Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2	100.000000	0.014500	46821.000000	4.000000	5.000000	11.000000	Spectrum29123 scans:12671,	AENGDNEKMAALEAKICH	A[+42]ENGDNEKMAALEAKIC[+57]H	M	Q	99.700000	45.400000	49.100000	42.300000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57)	2130.000000	3.000000	-0.002600	-1.200000	2.000000	19.000000	NaN	88.455400	NaN	61.411450	46.109400	0.718450	32.157171	NaN	NaN	NaN	128.332624	NaN	71.439814	62.610361	1.073997	21.507656	NaN	NaN	46.473735	95.471492	0.000000	0.000000	0.000000	0.000000	0.115957	0.073439	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2	LA_HUMAN	LA_HUMAN	Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2	100.000000	0.014500	46821.000000	4.000000	5.000000	11.000000	Spectrum19347 scans:12444,	AENGDNEKMAALEAKICH	A[+42]ENGDNEKMAALEAKIC[+57]H	M	Q	99.700000	68.600000	50.500000	55.900000	Acetyl (+42), Dimethyl:2H(4) (+32), Oxidation (+16), Dimethyl:2H(4) (+32), Carbamidomethyl (+57)	2122.030000	3.000000	-0.002500	-1.200000	2.000000	19.000000	NaN	88.455400	NaN	61.411450	46.109400	0.718450	32.157171	NaN	NaN	NaN	128.332624	NaN	71.439814	62.610361	1.073997	21.507656	NaN	NaN	46.473735	95.471492	0.000000	0.000000	0.000000	0.000000	0.115898	0.073369	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Protein ECT2 OS=Homo sapiens GN=ECT2	sp|Q9H8V3|ECT2_HUMAN	ECT2_HUMAN	Protein ECT2 OS=Homo sapiens GN=ECT2 PE=1 SV=4	99.800000	0.002630	103489.500000	1.000000	2.000000	2.000000	Spectrum7526 scans:28865,	AENSVLTSTTGR	A[+42]ENSVLTSTTGR	M	T	99.700000	63.500000	47.500000	46.000000	Acetyl (+42)	1276.630000	2.000000	-0.000850	-0.660000	2.000000	13.000000	1.367000	5.455767	2.403333	0.568650	0.128250	0.212100	NaN	NaN	NaN	1.717984	7.915321	4.178983	0.661509	0.174146	0.317064	NaN	NaN	NaN	1.189747	4.044733	0.266009	0.485996	0.693502	1.000000	0.115840	0.073346	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Protein ECT2 OS=Homo sapiens GN=ECT2	sp|Q9H8V3-2|ECT2_HUMAN	ECT2_HUMAN	Isoform 2 of Protein ECT2 OS=Homo sapiens GN=ECT2	99.800000	0.002630	99905.900000	1.000000	2.000000	2.000000	Spectrum7527 scans:28868,	AENSVLTSTTGR	A[+42]ENSVLTSTTGR	M	T	99.500000	61.900000	47.700000	47.300000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1286.630000	2.000000	-0.002200	-1.700000	2.000000	13.000000	1.367000	5.455767	2.403333	0.568650	0.128250	0.212100	NaN	NaN	NaN	1.717984	7.915321	4.178983	0.661509	0.174146	0.317064	NaN	NaN	NaN	1.189747	4.044733	0.266009	0.485996	0.691943	1.000000	0.115667	0.072976	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.027700	99012.600000	5.000000	14.000000	21.000000	Spectrum28158 scans:10022,	AENVAVPEAAEER	A[+28]ENVAVPEAAEER	D	A	99.700000	74.300000	49.300000	55.800000	Dimethyl (+28), Label:13C(6) (+6)	1417.710000	2.000000	-0.000310	-0.220000	4.000000	16.000000	0.414033	0.293167	0.707367	0.769600	0.437000	0.568050	1.036443	17.058886	19.173057	0.520338	0.425331	1.229989	0.895274	0.593387	0.849167	0.693203	7.265217	9.187779	0.702939	2.761312	0.022942	0.344993	0.059631	0.890057	0.007882	0.004949	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.027700	99012.600000	5.000000	14.000000	21.000000	Spectrum18216 scans:10023,	AENVAVPEAAEER	A[+28]ENVAVPEAAEER	D	A	99.700000	84.800000	48.500000	67.800000	Dimethyl (+28)	1411.690000	2.000000	-0.000700	-0.500000	4.000000	16.000000	0.414033	0.293167	0.707367	0.769600	0.437000	0.568050	1.036443	17.058886	19.173057	0.520338	0.425331	1.229989	0.895274	0.593387	0.849167	0.693203	7.265217	9.187779	0.702939	2.761312	0.022942	0.344993	0.059587	0.889396	0.007878	0.004920	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.027700	99012.600000	5.000000	14.000000	21.000000	Spectrum18218 scans:10026,	AENVAVPEAAEER	A[+28]ENVAVPEAAEER	D	A	99.700000	87.700000	48.800000	67.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1421.700000	2.000000	-0.000290	-0.200000	4.000000	16.000000	0.414033	0.293167	0.707367	0.769600	0.437000	0.568050	1.036443	17.058886	19.173057	0.520338	0.425331	1.229989	0.895274	0.593387	0.849167	0.693203	7.265217	9.187779	0.702939	2.761312	0.022942	0.344993	0.059542	0.888736	0.007875	0.004917	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Exosome complex component RRP40 OS=Homo sapiens GN=EXOSC3	sp|Q9NQT5-2|EXOS3_HUMAN	EXOS3_HUMAN	Isoform 2 of Exosome complex component RRP40 OS=Homo sapiens GN=EXOSC3	98.900000	0.010000	17229.300000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.25318.25318.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25318"	AEPASVAAESLAGSR	A[+42]EPASVAAESLAGSR	M	A	99.700000	72.100000	52.300000	62.000000	Acetyl (+42)	1456.720000	2.000000	-0.000520	-0.350000	2.000000	16.000000	0.436100	0.504700	1.107133	0.881250	0.414700	0.471100	0.500100	1.816843	4.011829	0.548071	0.732227	1.925114	1.025156	0.563107	0.704238	0.334481	0.773776	1.922479	0.635903	0.689703	0.089460	0.008613	0.232009	0.022138	0.007871	0.004915	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Exosome complex component RRP40 OS=Homo sapiens GN=EXOSC3	sp|Q9NQT5-2|EXOS3_HUMAN	EXOS3_HUMAN	Isoform 2 of Exosome complex component RRP40 OS=Homo sapiens GN=EXOSC3	98.900000	0.010000	17229.300000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.25321.25321.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25321"	AEPASVAAESLAGSR	A[+42]EPASVAAESLAGSR	M	A	99.700000	75.500000	52.700000	68.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1466.730000	2.000000	0.001400	0.980000	2.000000	16.000000	0.436100	0.504700	1.107133	0.881250	0.414700	0.471100	0.500100	1.816843	4.011829	0.548071	0.732227	1.925114	1.025156	0.563107	0.704238	0.334481	0.773776	1.922479	0.635903	0.689703	0.089460	0.008613	0.230801	0.021959	0.007859	0.004882	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Zinc finger CCCH-type antiviral protein 1-like OS=Homo sapiens GN=ZC3HAV1L	sp|Q96H79|ZCCHL_HUMAN	ZCCHL_HUMAN	Zinc finger CCCH-type antiviral protein 1-like OS=Homo sapiens GN=ZC3HAV1L PE=1 SV=2	100.000000	0.005010	32943.400000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33260.33260.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33260"	AEPTVCSFLTK	A[+42]EPTVC[+57]SFLTK	M	V	99.700000	57.100000	52.100000	46.100000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl (+28)	1321.660000	2.000000	-0.000450	-0.340000	2.000000	12.000000	21.132000	13.132400	1.083400	1.783850	2.407500	1.135550	NaN	NaN	NaN	26.557748	19.052713	1.883846	2.075149	3.269061	1.697511	NaN	NaN	NaN	14.316448	11.160887	0.369741	0.298857	0.953195	0.761405	0.115206	0.071576	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Zinc finger CCCH-type antiviral protein 1-like OS=Homo sapiens GN=ZC3HAV1L	sp|Q96H79-2|ZCCHL_HUMAN	ZCCHL_HUMAN	Isoform 2 of Zinc finger CCCH-type antiviral protein 1-like OS=Homo sapiens GN=ZC3HAV1L	100.000000	0.008640	10760.000000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.49176.49176.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=49176"	AEPTVCSFLTKVL	A[+42]EPTVC[+57]SFLTKVL	M	C	98.700000	55.600000	55.700000	54.200000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36)	1541.820000	2.000000	-0.000700	-0.450000	2.000000	14.000000	135.569900	48.194000	0.355500	582.267550	359.575250	0.609250	NaN	NaN	NaN	170.378158	69.920689	0.618153	677.350647	488.254803	0.910756	NaN	NaN	NaN	423.864402	279.087746	0.000000	0.000000	0.000000	0.000000	0.115148	0.071201	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Zinc finger CCCH-type antiviral protein 1-like OS=Homo sapiens GN=ZC3HAV1L	sp|Q96H79|ZCCHL_HUMAN	ZCCHL_HUMAN	Zinc finger CCCH-type antiviral protein 1-like OS=Homo sapiens GN=ZC3HAV1L PE=1 SV=2	100.000000	0.008640	32943.400000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.47636.47636.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47636"	AEPTVCSFLTKVLCAH	A[+42]EPTVC[+57]SFLTKVLC[+57]AH	M	G	99.300000	58.500000	54.900000	58.500000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl (+28), Carbamidomethyl (+57)	1901.940000	2.000000	-0.001000	-0.550000	2.000000	17.000000	31.784800	11.432400	0.422300	85.734200	40.427450	0.700100	NaN	NaN	NaN	39.945708	16.586324	0.734307	99.734419	54.895037	1.046566	NaN	NaN	NaN	69.840064	35.740680	0.000000	0.000000	0.000000	0.000000	0.115091	0.070961	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Zinc finger CCCH-type antiviral protein 1-like OS=Homo sapiens GN=ZC3HAV1L	sp|Q96H79|ZCCHL_HUMAN	ZCCHL_HUMAN	Zinc finger CCCH-type antiviral protein 1-like OS=Homo sapiens GN=ZC3HAV1L PE=1 SV=2	100.000000	0.008640	32943.400000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.47644.47644.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47644"	AEPTVCSFLTKVLCAH	A[+42]EPTVC[+57]SFLTKVLC[+57]AH	M	G	99.700000	83.400000	55.400000	78.600000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57)	1909.950000	2.000000	-0.000650	-0.340000	2.000000	17.000000	31.784800	11.432400	0.422300	85.734200	40.427450	0.700100	NaN	NaN	NaN	39.945708	16.586324	0.734307	99.734419	54.895037	1.046566	NaN	NaN	NaN	69.840064	35.740680	0.000000	0.000000	0.000000	0.000000	0.115034	0.070939	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Low molecular weight phosphotyrosine protein phosphatase OS=Homo sapiens GN=ACP1 PE=4 SV=1	F2Z2Q9_HUMAN	F2Z2Q9_HUMAN	Low molecular weight phosphotyrosine protein phosphatase OS=Homo sapiens GN=ACP1 PE=4 SV=1	100.000000	0.002880	7482.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.30961.30961.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30961"	AEQATKSVLFVC	A[+42]EQATKSVLFVC[+57]	M	L	99.700000	74.500000	54.000000	62.500000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57)	1429.740000	2.000000	-0.000240	-0.170000	2.000000	13.000000	8.139167	3.910933	0.500067	0.342000	1.031450	3.024600	NaN	NaN	NaN	10.228939	5.674050	0.869530	0.397848	1.400570	4.521414	NaN	NaN	NaN	5.313393	3.537310	0.474686	0.345938	1.000000	0.869228	0.114977	0.070918	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Low molecular weight phosphotyrosine protein phosphatase OS=Homo sapiens GN=ACP1 PE=4 SV=1	G5E9R5_HUMAN	G5E9R5_HUMAN	Acid phosphatase 1, soluble, isoform CRA_d OS=Homo sapiens GN=ACP1 PE=4 SV=1	100.000000	0.004670	8953.100000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.55275.55275.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=55275"	AEQATKSVLFVC	A[+42]EQATKSVLFVC[+57]	M	L	99.600000	61.200000	53.400000	44.600000	Acetyl (+42), Dimethyl (+28), Carbamidomethyl (+57)	1421.720000	2.000000	-0.001100	-0.740000	2.000000	13.000000	8.139167	3.910933	0.500067	0.342000	1.031450	3.024600	NaN	NaN	NaN	10.228939	5.674050	0.869530	0.397848	1.400570	4.521414	NaN	NaN	NaN	5.313393	3.537310	0.474686	0.345938	1.000000	0.866092	0.114920	0.070787	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	sp|P11413-2|G6PD_HUMAN	G6PD_HUMAN	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	100.000000	0.022400	63810.100000	5.000000	10.000000	17.000000	Spectrum43832 scans:14469,	AEQVALSR	A[+42]EQVALSR	M	T	99.000000	67.100000	47.000000	16.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	924.490000	2.000000	0.000540	0.590000	2.000000	9.000000	0.580033	0.322400	0.554900	0.745100	0.443500	0.595250	1.069000	1.690100	1.935500	0.728960	0.467743	0.964876	0.866773	0.602213	0.889827	0.714978	0.719798	0.927497	0.770237	0.596585	0.003931	0.014573	0.009907	0.036458	0.007832	0.004825	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	sp|P11413-2|G6PD_HUMAN	G6PD_HUMAN	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	97.700000	0.032300	63810.100000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction5A.11478.11478.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11478"	AEQVALSR	A[+42]EQVALSR	M	T	99.000000	67.100000	50.900000	20.400000	Acetyl (+42)	914.480000	2.000000	0.000180	0.200000	2.000000	9.000000	0.580033	0.322400	0.554900	0.745100	0.443500	0.595250	1.069000	1.690100	1.935500	0.728960	0.467743	0.964876	0.866773	0.602213	0.889827	0.714978	0.719798	0.927497	0.770237	0.596585	0.003931	0.014573	0.009899	0.036431	0.007824	0.004821	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	sp|P11413-2|G6PD_HUMAN	G6PD_HUMAN	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	100.000000	0.025400	63810.100000	4.000000	8.000000	11.000000	Nsco_Tails_biological_replicate_3_fraction6A.14379.14379.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14379"	AEQVALSR	A[+42]EQVALSR	M	T	99.000000	67.000000	51.500000	20.500000	Acetyl (+42), Label:13C(6) (+6)	920.500000	2.000000	0.000620	0.680000	2.000000	9.000000	0.580033	0.322400	0.554900	0.745100	0.443500	0.595250	1.069000	1.690100	1.935500	0.728960	0.467743	0.964876	0.866773	0.602213	0.889827	0.714978	0.719798	0.927497	0.770237	0.596585	0.003931	0.014573	0.009892	0.036379	0.007812	0.004778	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1	DPOE3_HUMAN	DPOE3_HUMAN	DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1	97.700000	0.002630	16841.900000	1.000000	2.000000	2.000000	Spectrum55848 scans:28223,	AERPEDLNLPNAVITR	A[+42]ERPEDLNLPNAVITR	M	I	99.500000	44.400000	52.900000	34.700000	Acetyl (+42), Label:13C(6)15N(4) (+10), Label:13C(6)15N(4) (+10)	1868.990000	3.000000	0.002900	1.500000	2.000000	17.000000	0.713167	0.256000	0.361633	0.592700	0.344750	0.585900	NaN	NaN	NaN	0.896276	0.371409	0.628818	0.689487	0.468124	0.875850	NaN	NaN	NaN	0.792881	0.419767	0.082552	0.073017	0.207576	0.182149	0.114465	0.069658	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Endothelial differentiation-related factor 1 OS=Homo sapiens GN=EDF1 PE=1 SV=1	sp|O60869-3|EDF1_HUMAN	EDF1_HUMAN	Isoform 3 of Endothelial differentiation-related factor 1 OS=Homo sapiens GN=EDF1	91.100000	0.002330	0.000000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.59554.59554.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=59554"	AESDWDTVTVLR	A[+42]ESDWDTVTVLR	M	K	98.900000	51.000000	51.100000	33.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1442.690000	2.000000	-0.001300	-0.930000	0.000000	0.000000	0.534700	0.407833	1.071933	5.769500	4.578000	0.671350	NaN	NaN	NaN	0.671987	0.591692	1.863908	6.711648	6.216308	1.003588	NaN	NaN	NaN	3.691817	3.404000	0.436472	0.439586	1.000000	1.000000	0.114352	0.069637	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4	PARP1_HUMAN	PARP1_HUMAN	Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4	96.700000	0.013200	113069.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction2A.8074.8074.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8074"	AESSDKLYR	A[+42]ESSDKLYR	M	V	99.700000	70.200000	51.800000	50.600000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1155.590000	2.000000	-0.001700	-1.400000	2.000000	10.000000	13.862633	72.795433	5.258867	3.895400	1.598100	0.373700	6.852529	NaN	1.283414	17.421935	105.612874	9.144265	4.531511	2.170005	0.558637	4.583171	NaN	0.615015	8.845539	53.891439	0.072387	0.363962	0.181229	0.900820	0.007785	0.069574	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4	PARP1_HUMAN	PARP1_HUMAN	Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4	97.700000	0.002330	113069.800000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.20414.20414.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20414"	AESSDKLYR	A[+42]ESSDKLYR	M	V	99.700000	66.000000	52.800000	34.400000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1147.610000	2.000000	-0.001500	-1.300000	2.000000	10.000000	13.862633	72.795433	5.258867	3.895400	1.598100	0.373700	6.852529	NaN	1.283414	17.421935	105.612874	9.144265	4.531511	2.170005	0.558637	4.583171	NaN	0.615015	8.845539	53.891439	0.072387	0.363962	0.181098	0.900178	0.007781	0.069553	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4	PARP1_HUMAN	PARP1_HUMAN	Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4	96.800000	0.008960	113069.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.8693.8693.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8693"	AESSDKLYR	A[+42]ESSDKLYR	M	V	99.100000	52.600000	50.900000	41.300000	Acetyl (+42), Dimethyl (+28)	1137.570000	2.000000	-0.000390	-0.340000	2.000000	10.000000	13.862633	72.795433	5.258867	3.895400	1.598100	0.373700	6.852529	NaN	1.283414	17.421935	105.612874	9.144265	4.531511	2.170005	0.558637	4.583171	NaN	0.615015	8.845539	53.891439	0.072387	0.363962	0.180968	0.896344	0.007770	0.069324	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Transducin beta-like protein 3 OS=Homo sapiens GN=TBL3 PE=1 SV=2	TBL3_HUMAN	TBL3_HUMAN	Transducin beta-like protein 3 OS=Homo sapiens GN=TBL3 PE=1 SV=2	95.000000	0.004480	89016.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.7177.7177.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7177"	AETAAGVGR	A[+42]ETAAGVGR	M	F	98.700000	50.400000	49.400000	33.000000	Acetyl (+42)	872.440000	2.000000	0.000650	0.750000	2.000000	10.000000	3.703167	1.118267	0.360233	2.318850	0.318100	0.197200	NaN	NaN	0.751629	4.653973	1.622401	0.626384	2.697513	0.431937	0.294790	NaN	NaN	0.360182	3.675743	1.027169	0.165586	0.334353	0.413370	0.818198	0.113901	0.069303	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1	SSRP1_HUMAN	SSRP1_HUMAN	FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1	100.000000	0.008960	81059.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.29981.29981.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29981"	AETLEFNDVYQEVKGSMNDGR	A[+42]ETLEFNDVYQEVKGSMNDGR	M	L	99.700000	67.500000	53.800000	67.400000	Acetyl (+42), Dimethyl:2H(4) (+32), Oxidation (+16), Label:13C(6) (+6)	2497.170000	2.000000	-0.002300	-0.940000	2.000000	22.000000	1.218000	NaN	10.688900	317.716800	860.763550	2.731150	NaN	NaN	NaN	1.530728	NaN	18.586159	369.599302	1168.801073	4.082742	NaN	NaN	NaN	185.565015	1168.801073	0.403301	NaN	1.000000	NaN	0.113845	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1	SSRP1_HUMAN	SSRP1_HUMAN	FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1	100.000000	0.008960	81059.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.34565.34565.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34565"	AETLEFNDVYQEVKGSMNDGR	A[+42]ETLEFNDVYQEVKGSMNDGR	M	L	99.700000	85.900000	54.800000	77.500000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2481.170000	2.000000	0.000590	0.240000	2.000000	22.000000	1.218000	NaN	10.688900	317.716800	860.763550	2.731150	NaN	NaN	NaN	1.530728	NaN	18.586159	369.599302	1168.801073	4.082742	NaN	NaN	NaN	185.565015	1168.801073	0.403301	NaN	1.000000	NaN	0.113789	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein prenyltransferase alpha subunit repeat-containing protein 1 OS=Homo sapiens GN=PTAR1 PE=4 SV=1	PTAR1_HUMAN	PTAR1_HUMAN	Protein prenyltransferase alpha subunit repeat-containing protein 1 OS=Homo sapiens GN=PTAR1 PE=2 SV=2	98.000000	0.001320	46387.600000	1.000000	1.000000	1.000000	Spectrum58659 scans:31652,	AETSEEVAVLVQR	A[+42]ETSEEVAVLVQR	M	V	99.500000	67.700000	50.000000	53.100000	Acetyl (+42)	1471.750000	2.000000	-0.002800	-1.900000	2.000000	14.000000	0.077567	0.148633	2.405100	1.120800	0.203100	0.181800	NaN	NaN	NaN	0.097482	0.215640	4.182055	1.303824	0.275782	0.271769	NaN	NaN	NaN	0.700653	0.245711	0.452491	0.077527	1.000000	0.189317	0.113733	0.068260	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 4 of Sorting nexin-3 OS=Homo sapiens GN=SNX3	sp|O60493-4|SNX3_HUMAN	SNX3_HUMAN	Isoform 4 of Sorting nexin-3 OS=Homo sapiens GN=SNX3	95.600000	0.005760	16298.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.8744.8744.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8744"	AETVADTR	A[+42]ETVADTR	M	R	99.000000	67.600000	47.700000	41.200000	Acetyl (+42)	903.430000	2.000000	-0.004400	-4.900000	2.000000	9.000000	0.669633	0.225100	0.321300	1.443750	1.620800	0.951750	4.985871	1.144986	0.702800	0.841565	0.326579	0.558685	1.679511	2.200828	1.422752	3.334696	0.487639	0.336784	1.951924	1.005015	0.116683	0.235760	0.288588	0.574500	0.007751	0.004651	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 4 of Sorting nexin-3 OS=Homo sapiens GN=SNX3	sp|O60493-4|SNX3_HUMAN	SNX3_HUMAN	Isoform 4 of Sorting nexin-3 OS=Homo sapiens GN=SNX3	100.000000	0.007000	16298.300000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.18502.18502.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18502"	AETVADTR	A[+42]ETVADTR	M	R	99.000000	57.500000	48.100000	33.300000	Acetyl (+42), Label:13C(6)15N(4) (+10)	913.440000	2.000000	-0.001200	-1.300000	2.000000	9.000000	0.669633	0.225100	0.321300	1.443750	1.620800	0.951750	4.985871	1.144986	0.702800	0.841565	0.326579	0.558685	1.679511	2.200828	1.422752	3.334696	0.487639	0.336784	1.951924	1.005015	0.116683	0.235760	0.287359	0.573293	0.007743	0.004650	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	RNA pseudouridylate synthase domain-containing protein 2 OS=Homo sapiens GN=RPUSD2 PE=1 SV=2	RUSD2_HUMAN	RUSD2_HUMAN	RNA pseudouridylate synthase domain-containing protein 2 OS=Homo sapiens GN=RPUSD2 PE=1 SV=2	99.900000	0.007900	61292.800000	1.000000	3.000000	6.000000	Spectrum30078 scans:15581,	AETVSTQVGTEGGLR	A[+42]ETVSTQVGTEGGLR	M	A	99.700000	96.300000	50.100000	76.200000	Acetyl (+42), Label:13C(6) (+6)	1551.780000	2.000000	-0.000840	-0.540000	36.000000	50.000000	1.233700	0.396867	0.397000	0.737200	0.442250	0.600550	NaN	NaN	NaN	1.550459	0.575781	0.690315	0.857583	0.600516	0.897750	NaN	NaN	NaN	1.204021	0.588149	0.178359	0.013385	0.436464	0.032525	0.113399	0.067899	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	RNA pseudouridylate synthase domain-containing protein 2 OS=Homo sapiens GN=RPUSD2 PE=1 SV=2	RUSD2_HUMAN	RUSD2_HUMAN	RNA pseudouridylate synthase domain-containing protein 2 OS=Homo sapiens GN=RPUSD2 PE=1 SV=2	99.900000	0.007900	61292.800000	1.000000	3.000000	6.000000	Spectrum30077 scans:15580,	AETVSTQVGTEGGLR	A[+42]ETVSTQVGTEGGLR	M	A	99.700000	96.400000	49.300000	74.500000	Acetyl (+42)	1545.760000	2.000000	-0.000610	-0.390000	36.000000	50.000000	1.233700	0.396867	0.397000	0.737200	0.442250	0.600550	NaN	NaN	NaN	1.550459	0.575781	0.690315	0.857583	0.600516	0.897750	NaN	NaN	NaN	1.204021	0.588149	0.178359	0.013385	0.436157	0.032388	0.113343	0.067879	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	RNA pseudouridylate synthase domain-containing protein 2 OS=Homo sapiens GN=RPUSD2 PE=1 SV=2	RUSD2_HUMAN	RUSD2_HUMAN	RNA pseudouridylate synthase domain-containing protein 2 OS=Homo sapiens GN=RPUSD2 PE=1 SV=2	99.800000	0.008960	61292.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.17088.17088.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17088"	AETVSTQVGTEGGLR	A[+42]ETVSTQVGTEGGLR	M	A	99.700000	70.100000	53.200000	58.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1555.770000	2.000000	-0.002500	-1.600000	36.000000	50.000000	1.233700	0.396867	0.397000	0.737200	0.442250	0.600550	NaN	NaN	NaN	1.550459	0.575781	0.690315	0.857583	0.600516	0.897750	NaN	NaN	NaN	1.204021	0.588149	0.178359	0.013385	0.435849	0.032298	0.113121	0.067860	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Dynein light chain roadblock-type 1 OS=Homo sapiens GN=DYNLRB1 PE=1 SV=3	sp|Q9NP97|DLRB1_HUMAN	DLRB1_HUMAN	Dynein light chain roadblock-type 1 OS=Homo sapiens GN=DYNLRB1 PE=1 SV=3	88.700000	0.026300	10903.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction2A.13844.13844.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13844"	AEVEETLKR	A[+42]EVEETLKR	M	L	98.600000	56.200000	53.100000	30.500000	Acetyl (+42), Dimethyl (+28)	1143.610000	2.000000	-0.000160	-0.140000	2.000000	10.000000	20.500933	8.815767	0.393033	57.193100	23.289450	0.404700	21.346743	19.550757	1.228743	25.764652	12.790067	0.683417	66.532616	31.623939	0.604978	14.277325	8.326482	0.588817	35.524864	17.580162	0.000000	0.003472	0.000000	0.008373	0.007709	0.004625	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dynein light chain roadblock-type 1 OS=Homo sapiens GN=DYNLRB1 PE=1 SV=3	sp|Q9NP97|DLRB1_HUMAN	DLRB1_HUMAN	Dynein light chain roadblock-type 1 OS=Homo sapiens GN=DYNLRB1 PE=1 SV=3	98.000000	0.002630	10903.900000	1.000000	2.000000	2.000000	Spectrum23039 scans:11029,	AEVEETLKR	A[+42]EVEETLKR	M	L	99.300000	56.300000	49.500000	30.300000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1153.660000	2.000000	-0.000450	-0.390000	2.000000	10.000000	20.500933	8.815767	0.393033	57.193100	23.289450	0.404700	21.346743	19.550757	1.228743	25.764652	12.790067	0.683417	66.532616	31.623939	0.604978	14.277325	8.326482	0.588817	35.524864	17.580162	0.000000	0.003472	0.000000	0.008350	0.007705	0.004559	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Dynein light chain roadblock-type 1 OS=Homo sapiens GN=DYNLRB1 PE=1 SV=3	sp|Q9NP97|DLRB1_HUMAN	DLRB1_HUMAN	Dynein light chain roadblock-type 1 OS=Homo sapiens GN=DYNLRB1 PE=1 SV=3	98.500000	0.004480	10903.900000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.14862.14862.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14862"	AEVEETLKR	A[+42]EVEETLKR	M	L	99.600000	61.400000	53.400000	33.200000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1161.640000	2.000000	0.000190	0.160000	2.000000	10.000000	20.500933	8.815767	0.393033	57.193100	23.289450	0.404700	21.346743	19.550757	1.228743	25.764652	12.790067	0.683417	66.532616	31.623939	0.604978	14.277325	8.326482	0.588817	35.524864	17.580162	0.000000	0.003472	0.000000	0.008332	0.007690	0.004557	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S15 OS=Homo sapiens GN=RPS15 PE=1 SV=2	tr|K7EQJ5|K7EQJ5_HUMAN	K7EQJ5_HUMAN	40S ribosomal protein S15 OS=Homo sapiens GN=RPS15 PE=1 SV=2	99.700000	0.006590	0.000000	1.000000	2.000000	5.000000	Spectrum33037 scans:2058,	AEVEQKKKR	A[+42]EVEQKKKR	M	T	99.500000	32.300000	44.500000	25.400000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1258.850000	3.000000	-0.000490	-0.390000	0.000000	0.000000	34.410667	14.728033	NaN	679.486250	348.841950	0.410550	NaN	NaN	NaN	43.245779	21.367685	NaN	790.444961	473.680426	0.613723	NaN	NaN	NaN	416.845370	247.524056	0.000000	0.000000	0.000000	0.000000	0.112736	0.066705	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	40S ribosomal protein S15 OS=Homo sapiens GN=RPS15 PE=1 SV=2	tr|K7EQJ5|K7EQJ5_HUMAN	K7EQJ5_HUMAN	40S ribosomal protein S15 OS=Homo sapiens GN=RPS15 PE=1 SV=2	96.800000	0.004480	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.2108.2108.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2108"	AEVEQKKKR	A[+42]EVEQKKKR	M	T	99.200000	62.500000	52.700000	47.500000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1274.810000	2.000000	0.004100	3.300000	0.000000	0.000000	34.410667	14.728033	NaN	679.486250	348.841950	0.410550	NaN	NaN	NaN	43.245779	21.367685	NaN	790.444961	473.680426	0.613723	NaN	NaN	NaN	416.845370	247.524056	0.000000	0.000000	0.000000	0.000000	0.112681	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Forkhead box protein K1 OS=Homo sapiens GN=FOXK1 PE=1 SV=1	sp|P85037|FOXK1_HUMAN	FOXK1_HUMAN	Forkhead box protein K1 OS=Homo sapiens GN=FOXK1 PE=1 SV=1	98.900000	0.006590	75438.600000	1.000000	2.000000	5.000000	Spectrum22742 scans:4730,	AEVGEDSGAR	A[+42]EVGEDSGAR	M	A	99.700000	78.900000	41.600000	53.700000	Acetyl (+42)	1031.450000	2.000000	0.000330	0.320000	2.000000	11.000000	0.586300	0.346700	0.593167	0.746650	0.255800	0.342600	1.766514	1.450086	0.812657	0.736835	0.502998	1.031415	0.868576	0.347342	0.512146	1.181496	0.617578	0.389427	0.928969	0.489306	0.019560	0.024670	0.047332	0.058795	0.007672	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction3A (Nsco_Tails_biological_replicate_3_fraction3A_127089)	Forkhead box protein K1 OS=Homo sapiens GN=FOXK1 PE=1 SV=1	sp|P85037|FOXK1_HUMAN	FOXK1_HUMAN	Forkhead box protein K1 OS=Homo sapiens GN=FOXK1 PE=1 SV=1	99.400000	0.159000	75438.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction3A.4867.4867.2 File:"Nsco_Tails_biological_replicate_3_fraction3A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4867"	AEVGEDSGAR	A[+42]EVGEDSGAR	M	A	98.900000	43.500000	45.200000	35.600000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1041.460000	2.000000	0.000350	0.330000	2.000000	11.000000	0.586300	0.346700	0.593167	0.746650	0.255800	0.342600	1.766514	1.450086	0.812657	0.736835	0.502998	1.031415	0.868576	0.347342	0.512146	1.181496	0.617578	0.389427	0.928969	0.489306	0.019560	0.024670	0.047168	0.058433	0.007668	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum53893 scans:25985,	AEVSKSDIGEVILVGGMTR	A[+28]EVSKSDIGEVILVGGMTR	D	M	99.100000	39.900000	53.900000	28.100000	Dimethyl (+28), Dimethyl:2H(4) (+32), Oxidation (+16), Label:13C(6) (+6)	2042.130000	3.000000	-0.002500	-1.200000	373.000000	391.000000	0.760467	0.148000	0.311933	10.705900	8.255200	0.747250	NaN	NaN	NaN	0.955720	0.214721	0.542398	12.454152	11.209451	1.117049	NaN	NaN	NaN	6.704936	5.712086	0.439341	0.486333	1.000000	1.000000	0.112407	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1	EIF3E_HUMAN	EIF3E_HUMAN	Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1	100.000000	0.007900	52204.600000	3.000000	5.000000	6.000000	Spectrum7984 scans:30140,	AEYDLTTR	A[+42]EYDLTTR	M	I	98.900000	52.800000	45.800000	0.000000	Acetyl (+42), Label:13C(6) (+6)	1015.490000	2.000000	0.000600	0.590000	2.000000	9.000000	0.407400	0.311200	0.767533	0.856400	0.379400	0.443200	1.258700	34.206743	15.542700	0.512002	0.451494	1.334608	0.996248	0.515174	0.662531	0.841855	14.568327	7.448102	0.783369	5.178332	0.031667	0.368319	0.075729	0.871212	0.007660	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1	EIF3E_HUMAN	EIF3E_HUMAN	Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1	100.000000	0.007900	52204.600000	3.000000	5.000000	6.000000	Spectrum19938 scans:14178,	AEYDLTTR	A[+42]EYDLTTR	M	I	98.900000	51.700000	44.300000	0.000000	Acetyl (+42)	1009.470000	2.000000	0.000530	0.530000	2.000000	9.000000	0.407400	0.311200	0.767533	0.856400	0.379400	0.443200	1.258700	34.206743	15.542700	0.512002	0.451494	1.334608	0.996248	0.515174	0.662531	0.841855	14.568327	7.448102	0.783369	5.178332	0.031667	0.368319	0.075521	0.870619	0.007649	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1	EIF3E_HUMAN	EIF3E_HUMAN	Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1	100.000000	0.010000	52204.600000	2.000000	3.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.17171.17171.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17171"	AEYDLTTR	A[+42]EYDLTTR	M	I	99.000000	56.500000	48.600000	0.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1019.490000	2.000000	0.005400	5.300000	2.000000	9.000000	0.407400	0.311200	0.767533	0.856400	0.379400	0.443200	1.258700	34.206743	15.542700	0.512002	0.451494	1.334608	0.996248	0.515174	0.662531	0.841855	14.568327	7.448102	0.783369	5.178332	0.031667	0.368319	0.075469	0.870026	0.007646	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	sp|Q01081|U2AF1_HUMAN	U2AF1_HUMAN	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	100.000000	0.013400	27854.200000	3.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.37947.37947.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37947"	AEYLASIFGTEKDKVN	A[+42]EYLASIFGTEKDKVN	M	C	99.600000	63.200000	57.300000	57.900000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1898.000000	2.000000	-0.001200	-0.630000	2.000000	17.000000	49.546033	23.905667	1.459433	190.612050	66.588000	0.362400	NaN	NaN	NaN	62.267228	34.682755	2.537704	221.738607	90.417544	0.541745	NaN	NaN	NaN	142.002917	62.550149	0.000000	0.000000	0.000000	0.000000	0.112080	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	sp|Q01081|U2AF1_HUMAN	U2AF1_HUMAN	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	100.000000	0.013400	27854.200000	3.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.38230.38230.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38230"	AEYLASIFGTEKDKVNC	A[+42]EYLASIFGTEKDKVNC[+57]	M	S	99.600000	62.400000	56.300000	59.900000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57)	2058.030000	2.000000	-0.002000	-0.980000	2.000000	18.000000	2.518100	1.039800	0.394100	76.335950	21.429150	0.283800	NaN	NaN	NaN	3.164635	1.508560	0.685272	88.801454	29.097902	0.424247	NaN	NaN	NaN	45.983045	15.303231	0.304881	0.404681	0.725112	0.954618	0.112026	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Protein FRG1 OS=Homo sapiens GN=FRG1 PE=1 SV=1	FRG1_HUMAN	FRG1_HUMAN	Protein FRG1 OS=Homo sapiens GN=FRG1 PE=1 SV=1	99.400000	0.008960	29155.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.11585.11585.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11585"	AEYSYVKSTK	A[+42]EYSYVKSTK	M	L	98.800000	53.800000	54.000000	45.900000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1288.690000	2.000000	-0.000340	-0.270000	2.000000	11.000000	3.066067	4.724933	1.183700	13.554000	4.165350	0.309450	NaN	NaN	NaN	3.853295	6.855015	2.058251	15.767340	5.655985	0.462591	NaN	NaN	NaN	9.810318	6.255500	0.265854	0.060827	0.631858	0.143194	0.111972	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Protein FRG1 OS=Homo sapiens GN=FRG1 PE=1 SV=1	FRG1_HUMAN	FRG1_HUMAN	Protein FRG1 OS=Homo sapiens GN=FRG1 PE=1 SV=1	99.400000	0.008960	29155.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.11591.11591.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11591"	AEYSYVKSTK	A[+42]EYSYVKSTK	M	L	99.300000	56.700000	53.200000	50.100000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	1272.660000	2.000000	0.000360	0.280000	2.000000	11.000000	3.066067	4.724933	1.183700	13.554000	4.165350	0.309450	NaN	NaN	NaN	3.853295	6.855015	2.058251	15.767340	5.655985	0.462591	NaN	NaN	NaN	9.810318	6.255500	0.265854	0.060827	0.631426	0.142807	0.111917	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	E7ENZ3_HUMAN	E7ENZ3_HUMAN	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	100.000000	0.018400	53831.900000	4.000000	9.000000	14.000000	Spectrum70489 scans:45712,	AFADALEVIPM	A[+28]FADALEVIPM	R	A	99.600000	62.200000	48.900000	43.000000	Dimethyl (+28)	1203.620000	2.000000	-0.000360	-0.300000	395.000000	405.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Obg-like ATPase 1 OS=Homo sapiens GN=OLA1 PE=1 SV=2	sp|Q9NTK5|OLA1_HUMAN	OLA1_HUMAN	Obg-like ATPase 1 OS=Homo sapiens GN=OLA1 PE=1 SV=2	100.000000	0.007900	44727.400000	4.000000	5.000000	6.000000	Spectrum55150 scans:27417,	AFEDDDITHVEGSVDPIR	A[+28]FEDDDITHVEGSVDPIR	R	D	99.700000	48.500000	48.900000	44.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2051.970000	3.000000	0.000250	0.120000	126.000000	143.000000	0.379767	0.115467	0.683900	6.125950	22.727850	33.790600	NaN	NaN	NaN	0.477274	0.167521	1.189184	7.126305	30.861362	50.512893	NaN	NaN	NaN	3.801789	15.514441	0.457427	0.489336	1.000000	1.000000	0.111809	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	PA2G4_HUMAN	PA2G4_HUMAN	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	100.000000	0.023700	43768.700000	6.000000	9.000000	18.000000	Spectrum14064 scans:2511,	AFEDEKKAR	NaN	R	M	98.700000	30.400000	48.900000	17.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1190.720000	3.000000	0.000390	0.330000	282.000000	290.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of 40S ribosomal protein S20 OS=Homo sapiens GN=RPS20	sp|P60866|RS20_HUMAN	RS20_HUMAN	40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1	100.000000	0.007900	13355.000000	1.000000	2.000000	6.000000	Spectrum7983 scans:30139,	AFKDTGKTPVEPEVAIHR	A[+42]FKDTGKTPVEPEVAIHR	M	I	99.700000	47.400000	53.800000	28.300000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2106.200000	4.000000	-0.000430	-0.200000	2.000000	19.000000	107.037400	38.753233	0.347667	291.805350	136.458350	0.480950	NaN	NaN	NaN	134.519794	56.223861	0.604533	339.456565	185.292077	0.718963	NaN	NaN	NaN	236.988180	120.757969	0.000000	0.000000	0.000000	0.000000	0.111594	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of 40S ribosomal protein S20 OS=Homo sapiens GN=RPS20	sp|P60866|RS20_HUMAN	RS20_HUMAN	40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1	100.000000	0.007900	13355.000000	1.000000	2.000000	6.000000	Spectrum7989 scans:30158,	AFKDTGKTPVEPEVAIHR	A[+42]FKDTGKTPVEPEVAIHR	M	I	99.700000	48.800000	54.200000	22.900000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2118.170000	4.000000	-0.000430	-0.200000	2.000000	19.000000	107.037400	38.753233	0.347667	291.805350	136.458350	0.480950	NaN	NaN	NaN	134.519794	56.223861	0.604533	339.456565	185.292077	0.718963	NaN	NaN	NaN	236.988180	120.757969	0.000000	0.000000	0.000000	0.000000	0.111486	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2	RL10A_HUMAN	RL10A_HUMAN	60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2	99.000000	0.002500	24814.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.28144.28144.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28144"	AFLASESLIKQIPR	A[+28]FLASESLIKQIPR	D	I	98.800000	64.400000	55.900000	54.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1645.990000	3.000000	-0.000560	-0.340000	109.000000	122.000000	29.357133	7.082733	0.200233	92.860250	36.766350	0.339750	NaN	NaN	NaN	36.894726	10.275752	0.348171	108.024138	49.923756	0.507885	NaN	NaN	NaN	72.459432	30.099754	0.000000	0.000000	0.000000	0.000000	0.111379	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2	RL10A_HUMAN	RL10A_HUMAN	60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2	99.300000	0.004480	24814.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.24440.24440.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24440"	AFLASESLIKQIPR	A[+28]FLASESLIKQIPR	D	I	98.700000	71.100000	56.100000	57.200000	Dimethyl (+28), Dimethyl (+28)	1627.970000	3.000000	0.000840	0.520000	109.000000	122.000000	29.357133	7.082733	0.200233	92.860250	36.766350	0.339750	NaN	NaN	NaN	36.894726	10.275752	0.348171	108.024138	49.923756	0.507885	NaN	NaN	NaN	72.459432	30.099754	0.000000	0.000000	0.000000	0.000000	0.111325	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum54304 scans:26448,	AFSITQGLLKDR	A[+28]FSITQGLLKDR	R	L	99.500000	39.800000	49.600000	25.300000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1413.860000	3.000000	0.001500	1.100000	891.000000	902.000000	17.776767	38.850633	2.700867	1.793400	NaN	NaN	NaN	NaN	NaN	22.341041	56.365171	4.696343	2.086259	NaN	NaN	NaN	NaN	NaN	12.213650	56.365171	0.369063	NaN	0.868825	NaN	0.111111	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum54318 scans:26463,	AFSITQGLLKDR	A[+28]FSITQGLLKDR	R	L	99.700000	46.000000	50.500000	25.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1421.840000	3.000000	0.001100	0.780000	891.000000	902.000000	17.776767	38.850633	2.700867	1.793400	NaN	NaN	NaN	NaN	NaN	22.341041	56.365171	4.696343	2.086259	NaN	NaN	NaN	NaN	NaN	12.213650	56.365171	0.369063	NaN	0.866473	NaN	0.110898	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 3 subunit J OS=Homo sapiens GN=EIF3J PE=1 SV=2	EIF3J_HUMAN	EIF3J_HUMAN	Eukaryotic translation initiation factor 3 subunit J OS=Homo sapiens GN=EIF3J PE=1 SV=2	100.000000	0.012500	29045.300000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.17641.17641.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17641"	AFSVEDPVR	A[+28]FSVEDPVR	D	K	99.100000	48.900000	51.200000	27.700000	Dimethyl (+28)	1046.540000	2.000000	-0.000018	-0.017000	18.000000	26.000000	0.234667	2.801400	46.020367	1.018900	0.380650	0.373800	1.926929	NaN	NaN	0.294919	4.064320	80.021504	1.185284	0.516871	0.558786	1.288786	NaN	NaN	0.922996	2.290596	0.099654	0.419471	0.233807	0.965870	0.007554	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens GN=TSR2 PE=1 SV=1	TSR2_HUMAN	TSR2_HUMAN	Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens GN=TSR2 PE=1 SV=1	95.700000	0.002630	20875.600000	1.000000	2.000000	2.000000	Spectrum25090 scans:4323,	AGAAEDAR	A[+42]GAAEDAR	M	A	99.000000	53.500000	43.700000	33.900000	Acetyl (+42), Label:13C(6) (+6)	807.380000	2.000000	0.000062	0.077000	2.000000	9.000000	1.091533	0.660000	0.578767	0.825300	0.128450	0.152450	NaN	264.817143	NaN	1.371790	0.957539	1.006376	0.960070	0.174418	0.227894	NaN	112.783103	NaN	1.165930	37.971687	0.111257	0.360319	0.260149	0.822570	0.110686	0.404429	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens GN=TSR2 PE=1 SV=1	TSR2_HUMAN	TSR2_HUMAN	Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens GN=TSR2 PE=1 SV=1	95.700000	0.002630	20875.600000	1.000000	2.000000	2.000000	Spectrum25089 scans:4322,	AGAAEDAR	A[+42]GAAEDAR	M	A	99.000000	63.000000	41.700000	22.700000	Acetyl (+42), Label:13C(6)15N(4) (+10)	811.370000	2.000000	-0.001100	-1.400000	2.000000	9.000000	1.091533	0.660000	0.578767	0.825300	0.128450	0.152450	NaN	264.817143	NaN	1.371790	0.957539	1.006376	0.960070	0.174418	0.227894	NaN	112.783103	NaN	1.165930	37.971687	0.111257	0.360319	0.259974	0.822029	0.110580	0.394318	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens GN=TSR2 PE=1 SV=1	TSR2_HUMAN	TSR2_HUMAN	Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens GN=TSR2 PE=1 SV=1	96.100000	0.005010	20875.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.4571.4571.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4571"	AGAAEDAR	A[+42]GAAEDAR	M	A	99.000000	47.500000	45.300000	29.300000	Acetyl (+42)	801.360000	2.000000	0.000230	0.290000	2.000000	9.000000	1.091533	0.660000	0.578767	0.825300	0.128450	0.152450	NaN	264.817143	NaN	1.371790	0.957539	1.006376	0.960070	0.174418	0.227894	NaN	112.783103	NaN	1.165930	37.971687	0.111257	0.360319	0.258235	0.821489	0.110474	0.384701	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Queuine tRNA-ribosyltransferase OS=Homo sapiens GN=QTRT1 PE=1 SV=3	TGT_HUMAN	TGT_HUMAN	Queuine tRNA-ribosyltransferase OS=Homo sapiens GN=QTRT1 PE=1 SV=3	98.800000	0.006590	44030.100000	1.000000	2.000000	5.000000	Spectrum29258 scans:13091,	AGAATQASLESAPR	A[+42]GAATQASLESAPR	M	I	99.700000	84.000000	48.800000	0.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1380.690000	2.000000	-0.000440	-0.320000	2.000000	15.000000	0.592300	0.294433	0.537467	0.781450	0.415000	0.534350	1.939586	2.111614	0.815271	0.744376	0.427169	0.934562	0.909059	0.563514	0.798789	1.297252	0.899316	0.390680	0.983562	0.630000	0.026660	0.046181	0.061839	0.104807	0.007518	0.375541	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Queuine tRNA-ribosyltransferase OS=Homo sapiens GN=QTRT1 PE=1 SV=3	TGT_HUMAN	TGT_HUMAN	Queuine tRNA-ribosyltransferase OS=Homo sapiens GN=QTRT1 PE=1 SV=3	98.800000	0.006590	44030.100000	1.000000	2.000000	5.000000	Spectrum46034 scans:16981,	AGAATQASLESAPR	A[+42]GAATQASLESAPR	M	I	99.700000	89.800000	49.400000	0.000000	Acetyl (+42), Label:13C(6) (+6)	1376.700000	2.000000	-0.001400	-1.000000	2.000000	15.000000	0.592300	0.294433	0.537467	0.781450	0.415000	0.534350	1.939586	2.111614	0.815271	0.744376	0.427169	0.934562	0.909059	0.563514	0.798789	1.297252	0.899316	0.390680	0.983562	0.630000	0.026660	0.046181	0.061798	0.104329	0.007511	0.342885	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Queuine tRNA-ribosyltransferase OS=Homo sapiens GN=QTRT1 PE=1 SV=3	TGT_HUMAN	TGT_HUMAN	Queuine tRNA-ribosyltransferase OS=Homo sapiens GN=QTRT1 PE=1 SV=3	99.100000	0.005010	44030.100000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.15791.15791.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15791"	AGAATQASLESAPR	A[+42]GAATQASLESAPR	M	I	99.700000	91.800000	52.200000	0.000000	Acetyl (+42)	1370.680000	2.000000	-0.000720	-0.530000	2.000000	15.000000	0.592300	0.294433	0.537467	0.781450	0.415000	0.534350	1.939586	2.111614	0.815271	0.744376	0.427169	0.934562	0.909059	0.563514	0.798789	1.297252	0.899316	0.390680	0.983562	0.630000	0.026660	0.046181	0.061510	0.104261	0.007507	0.335590	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2	UBR7_HUMAN	UBR7_HUMAN	Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2	100.000000	0.010500	47980.800000	1.000000	3.000000	8.000000	Spectrum22594 scans:2983,	AGAEGAAGR	A[+42]GAEGAAGR	M	Q	99.700000	66.300000	45.200000	23.300000	Acetyl (+42), Label:13C(6) (+6)	806.400000	2.000000	-0.000180	-0.220000	2.000000	10.000000	0.675867	0.374567	0.552400	0.735500	0.567250	0.771400	NaN	NaN	NaN	0.849399	0.543428	0.960529	0.855606	0.770249	1.153150	NaN	NaN	NaN	0.852502	0.656838	0.002317	0.108847	0.005343	0.244781	0.110054	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2	UBR7_HUMAN	UBR7_HUMAN	Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2	100.000000	0.010500	47980.800000	1.000000	3.000000	8.000000	Spectrum22595 scans:2987,	AGAEGAAGR	A[+42]GAEGAAGR	M	Q	99.700000	73.200000	44.300000	26.500000	Acetyl (+42)	800.380000	2.000000	-0.000570	-0.710000	2.000000	10.000000	0.675867	0.374567	0.552400	0.735500	0.567250	0.771400	NaN	NaN	NaN	0.849399	0.543428	0.960529	0.855606	0.770249	1.153150	NaN	NaN	NaN	0.852502	0.656838	0.002317	0.108847	0.005340	0.244623	0.109845	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2	UBR7_HUMAN	UBR7_HUMAN	Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2	98.900000	0.008960	47980.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.3764.3764.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3764"	AGAEGAAGR	A[+42]GAEGAAGR	M	Q	99.700000	70.400000	47.200000	16.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	810.390000	2.000000	0.000350	0.430000	2.000000	10.000000	0.675867	0.374567	0.552400	0.735500	0.567250	0.771400	NaN	NaN	NaN	0.849399	0.543428	0.960529	0.855606	0.770249	1.153150	NaN	NaN	NaN	0.852502	0.656838	0.002317	0.108847	0.005336	0.243676	0.109793	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 5 of Serrate RNA effector molecule homolog OS=Homo sapiens GN=SRRT	sp|Q9BXP5-5|SRRT_HUMAN	SRRT_HUMAN	Isoform 5 of Serrate RNA effector molecule homolog OS=Homo sapiens GN=SRRT	100.000000	0.003950	96207.500000	2.000000	3.000000	3.000000	Spectrum14963 scans:3848,	AGAGLGDGER	A[+28]GAGLGDGER	R	K	99.500000	58.400000	45.500000	34.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	939.470000	2.000000	0.000230	0.240000	255.000000	264.000000	9.283267	1.736267	0.525967	5.028750	0.814700	0.159150	NaN	NaN	NaN	11.666792	2.519006	0.914566	5.849935	1.106253	0.237910	NaN	NaN	NaN	8.758363	1.812629	0.163029	0.236564	0.371934	0.523852	0.109637	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4	sp|Q6YBV0-2|S36A4_HUMAN	S36A4_HUMAN	Isoform 2 of Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4	96.000000	0.003950	41368.200000	1.000000	1.000000	3.000000	Spectrum11493 scans:41008,	AGAILIPR	NaN	C	L	99.000000	54.100000	47.200000	0.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	861.530000	2.000000	-0.000078	-0.090000	269.000000	276.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.034600	16100.700000	6.000000	12.000000	12.000000	Nsco_Tails_biological_replicate1_apoptosis.15324.15324.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15324"	AGASATFPMQCSALR	A[+28]GASATFPMQC[+57]SALR	D	K	99.600000	56.800000	50.800000	48.700000	Dimethyl (+28), Oxidation (+16), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1620.760000	2.000000	-0.003900	-2.400000	12.000000	26.000000	0.645533	0.376833	0.577800	13.797350	1.440250	0.087000	NaN	NaN	NaN	0.811277	0.546716	1.004695	16.050429	1.955666	0.130055	NaN	NaN	NaN	8.430853	1.251191	0.448465	0.326460	1.000000	0.718792	0.109429	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.034600	16100.700000	6.000000	12.000000	12.000000	Nsco_Tails_biological_replicate1_apoptosis.21077.21077.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21077"	AGASATFPMQCSALR	A[+28]GASATFPMQC[+57]SALR	D	K	99.700000	68.500000	51.800000	58.700000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1604.770000	2.000000	-0.002500	-1.500000	12.000000	26.000000	0.645533	0.376833	0.577800	13.797350	1.440250	0.087000	NaN	NaN	NaN	0.811277	0.546716	1.004695	16.050429	1.955666	0.130055	NaN	NaN	NaN	8.430853	1.251191	0.448465	0.326460	1.000000	0.718336	0.109326	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.030700	16100.700000	5.000000	11.000000	13.000000	NSco_TAILS_20150124_Protein_complex_100Kda.40621.40621.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40621"	AGASATFPMQCSALR	A[+28]GASATFPMQC[+57]SALR	D	K	99.400000	67.800000	51.900000	53.000000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1600.770000	2.000000	-0.014000	-8.900000	12.000000	26.000000	0.645533	0.376833	0.577800	13.797350	1.440250	0.087000	NaN	NaN	NaN	0.811277	0.546716	1.004695	16.050429	1.955666	0.130055	NaN	NaN	NaN	8.430853	1.251191	0.448465	0.326460	1.000000	0.717881	0.109274	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.030700	16100.700000	5.000000	11.000000	13.000000	NSco_TAILS_20150124_Protein_complex_100Kda.31596.31596.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31596"	AGASATFPMQCSALR	A[+28]GASATFPMQC[+57]SALR	D	K	99.700000	74.200000	50.400000	67.800000	Dimethyl (+28), Oxidation (+16), Carbamidomethyl (+57)	1610.750000	2.000000	-0.004800	-3.000000	12.000000	26.000000	0.645533	0.376833	0.577800	13.797350	1.440250	0.087000	NaN	NaN	NaN	0.811277	0.546716	1.004695	16.050429	1.955666	0.130055	NaN	NaN	NaN	8.430853	1.251191	0.448465	0.326460	1.000000	0.714710	0.109223	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.032700	16100.700000	5.000000	11.000000	14.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.39373.39373.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39373"	AGASATFPMQCSALR	A[+28]GASATFPMQC[+57]SALR	D	K	99.700000	82.900000	51.300000	66.100000	Dimethyl (+28), Carbamidomethyl (+57)	1594.760000	2.000000	-0.004500	-2.900000	12.000000	26.000000	0.645533	0.376833	0.577800	13.797350	1.440250	0.087000	NaN	NaN	NaN	0.811277	0.546716	1.004695	16.050429	1.955666	0.130055	NaN	NaN	NaN	8.430853	1.251191	0.448465	0.326460	1.000000	0.714260	0.109171	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Uridine-cytidine kinase 2 OS=Homo sapiens GN=UCK2 PE=1 SV=1	sp|Q9BZX2|UCK2_HUMAN	UCK2_HUMAN	Uridine-cytidine kinase 2 OS=Homo sapiens GN=UCK2 PE=1 SV=1	99.300000	0.010800	29281.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.7282.7282.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7282"	AGDSEQTLQNH	A[+28]GDSEQTLQNH	M	Q	99.700000	57.100000	43.300000	51.800000	Acetyl (+42)	1240.530000	2.000000	-0.006700	-5.400000	2.000000	12.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.170000	9093.600000	2.000000	9.000000	68.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.29121.29121.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29121"	AGEFVDLYVPR	A[+28]GEFVDLYVPR	D	K	99.700000	67.800000	53.400000	47.900000	Dimethyl (+28)	1292.680000	2.000000	-0.000570	-0.440000	5.000000	15.000000	0.486333	0.227800	0.468200	0.849000	0.410600	0.483550	2.223486	NaN	NaN	0.611202	0.330496	0.814119	0.987640	0.557540	0.722849	1.487132	NaN	NaN	1.028658	0.444018	0.055782	0.159351	0.123525	0.347984	0.007433	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.125000	9093.600000	2.000000	8.000000	28.000000	Nsco_Tails_biological_replicate2_apoptosis.25129.25129.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25129"	AGEFVDLYVPR	A[+28]GEFVDLYVPR	D	K	99.700000	66.800000	53.700000	32.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1302.690000	2.000000	0.000490	0.380000	5.000000	15.000000	0.486333	0.227800	0.468200	0.849000	0.410600	0.483550	2.223486	NaN	NaN	0.611202	0.330496	0.814119	0.987640	0.557540	0.722849	1.487132	NaN	NaN	1.028658	0.444018	0.055782	0.159351	0.123446	0.347328	0.007429	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3	RS18_HUMAN	RS18_HUMAN	40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3	100.000000	0.039500	17701.300000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.8670.8670.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8670"	AGELTEDEVER	A[+28]GELTEDEVER	R	V	99.700000	70.200000	49.500000	52.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1284.610000	2.000000	-0.002000	-1.500000	56.000000	66.000000	0.457067	0.196433	0.435433	0.610050	0.610550	0.526550	NaN	NaN	NaN	0.574421	0.284989	0.757144	0.709670	0.829045	0.787129	NaN	NaN	NaN	0.642045	0.557017	0.066807	0.289214	0.147094	0.628019	0.108914	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3	RS18_HUMAN	RS18_HUMAN	40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3	100.000000	0.039500	17701.300000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.8671.8671.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8671"	AGELTEDEVER	A[+28]GELTEDEVER	R	V	99.700000	96.000000	49.300000	77.600000	Dimethyl (+28)	1274.600000	2.000000	-0.001100	-0.840000	56.000000	66.000000	0.457067	0.196433	0.435433	0.610050	0.610550	0.526550	NaN	NaN	NaN	0.574421	0.284989	0.757144	0.709670	0.829045	0.787129	NaN	NaN	NaN	0.642045	0.557017	0.066807	0.289214	0.147000	0.627626	0.108863	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3	RS18_HUMAN	RS18_HUMAN	40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3	100.000000	0.039500	17701.300000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.8720.8720.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8720"	AGELTEDEVER	A[+28]GELTEDEVER	R	V	99.700000	103.000000	50.700000	81.800000	Dimethyl (+28), Label:13C(6) (+6)	1280.620000	2.000000	-0.001300	-1.000000	56.000000	66.000000	0.457067	0.196433	0.435433	0.610050	0.610550	0.526550	NaN	NaN	NaN	0.574421	0.284989	0.757144	0.709670	0.829045	0.787129	NaN	NaN	NaN	0.642045	0.557017	0.066807	0.289214	0.146258	0.627234	0.108812	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Putative eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens GN=EIF2S3L PE=5 SV=2	sp|Q2VIR3|IF2GL_HUMAN	IF2GL_HUMAN	Putative eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens GN=EIF2S3L PE=5 SV=2	100.000000	0.010500	51211.300000	4.000000	7.000000	8.000000	Spectrum17683 scans:8765,	AGGEAGVTLGQPH	A[+42]GGEAGVTLGQPH	M	L	99.200000	54.800000	48.400000	43.500000	Dimethyl (+28)	1220.610000	2.000000	-0.000940	-0.770000	2.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Putative eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens GN=EIF2S3L PE=5 SV=2	sp|Q2VIR3|IF2GL_HUMAN	IF2GL_HUMAN	Putative eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens GN=EIF2S3L PE=5 SV=2	100.000000	0.010500	51211.300000	4.000000	7.000000	8.000000	Spectrum7437 scans:28615,	AGGEAGVTLGQPH	A[+42]GGEAGVTLGQPH	M	L	99.700000	89.200000	46.700000	72.600000	Acetyl (+42)	1234.590000	2.000000	-0.002300	-1.900000	2.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Putative eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens GN=EIF2S3L PE=5 SV=2	sp|Q2VIR3|IF2GL_HUMAN	IF2GL_HUMAN	Putative eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens GN=EIF2S3L PE=5 SV=2	100.000000	0.010500	51211.300000	4.000000	7.000000	8.000000	Spectrum8236 scans:30800,	AGGEAGVTLGQPHLSR	A[+42]GGEAGVTLGQPHLSR	M	Q	99.700000	85.700000	50.600000	73.600000	Acetyl (+42)	1590.810000	2.000000	-0.004200	-2.600000	2.000000	17.000000	0.456933	0.172200	0.375400	0.960700	0.349350	0.363500	NaN	NaN	NaN	0.574253	0.249831	0.652756	1.117580	0.474370	0.543389	NaN	NaN	NaN	0.845917	0.362101	0.197825	0.191401	0.432003	0.409471	0.108658	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Putative eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens GN=EIF2S3L PE=5 SV=2	sp|Q2VIR3|IF2GL_HUMAN	IF2GL_HUMAN	Putative eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens GN=EIF2S3L PE=5 SV=2	100.000000	0.004670	51211.300000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.34631.34631.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34631"	AGGEAGVTLGQPHLSR	A[+42]GGEAGVTLGQPHLSR	M	Q	99.700000	80.600000	54.700000	72.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1600.820000	2.000000	-0.003600	-2.300000	2.000000	17.000000	0.456933	0.172200	0.375400	0.960700	0.349350	0.363500	NaN	NaN	NaN	0.574253	0.249831	0.652756	1.117580	0.474370	0.543389	NaN	NaN	NaN	0.845917	0.362101	0.197825	0.191401	0.431189	0.408716	0.108607	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform SpAlt-C of Nuclear autoantigen Sp-100 OS=Homo sapiens GN=SP100	sp|P23497-5|SP100_HUMAN	SP100_HUMAN	Isoform SpAlt-C of Nuclear autoantigen Sp-100 OS=Homo sapiens GN=SP100	98.900000	0.002500	53094.900000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.6394.6394.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6394"	AGGGGDLSTR	A[+42]GGGGDLSTR	M	R	99.700000	89.000000	47.500000	48.800000	Acetyl (+42)	931.440000	2.000000	-0.000480	-0.510000	2.000000	11.000000	1.233367	0.618467	0.646167	0.547750	0.304850	0.556150	NaN	NaN	NaN	1.550040	0.897282	1.123573	0.637196	0.413945	0.831378	NaN	NaN	NaN	1.093618	0.655614	0.251702	0.224829	0.546563	0.479506	0.108556	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Isoform SpAlt-C of Nuclear autoantigen Sp-100 OS=Homo sapiens GN=SP100	sp|P23497-5|SP100_HUMAN	SP100_HUMAN	Isoform SpAlt-C of Nuclear autoantigen Sp-100 OS=Homo sapiens GN=SP100	99.400000	0.010800	53094.900000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.5872.5872.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=5872"	AGGGGDLSTR	A[+42]GGGGDLSTR	M	R	99.700000	90.500000	48.900000	48.300000	Acetyl (+42), Label:13C(6) (+6)	937.460000	2.000000	0.000380	0.410000	2.000000	11.000000	1.233367	0.618467	0.646167	0.547750	0.304850	0.556150	NaN	NaN	NaN	1.550040	0.897282	1.123573	0.637196	0.413945	0.831378	NaN	NaN	NaN	1.093618	0.655614	0.251702	0.224829	0.546221	0.474836	0.108454	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform SpAlt-C of Nuclear autoantigen Sp-100 OS=Homo sapiens GN=SP100	sp|P23497-5|SP100_HUMAN	SP100_HUMAN	Isoform SpAlt-C of Nuclear autoantigen Sp-100 OS=Homo sapiens GN=SP100	98.900000	0.008960	53094.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.6354.6354.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6354"	AGGGGDLSTR	A[+42]GGGGDLSTR	M	R	99.700000	71.400000	48.100000	13.600000	Acetyl (+42), Label:13C(6)15N(4) (+10)	941.450000	2.000000	0.001000	1.100000	2.000000	11.000000	1.233367	0.618467	0.646167	0.547750	0.304850	0.556150	NaN	NaN	NaN	1.550040	0.897282	1.123573	0.637196	0.413945	0.831378	NaN	NaN	NaN	1.093618	0.655614	0.251702	0.224829	0.545880	0.471109	0.108302	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	HSP74_HUMAN	HSP74_HUMAN	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	100.000000	0.009440	94313.900000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.41802.41802.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41802"	AGGIETIANEYSDR	A[+28]GGIETIANEYSDR	R	C	99.700000	80.900000	51.100000	67.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1532.730000	2.000000	-0.009300	-6.100000	20.000000	33.000000	0.589033	0.494633	0.834233	3.604000	15.087950	8.374100	NaN	NaN	NaN	0.740271	0.717623	1.450588	4.192526	20.487406	12.518275	NaN	NaN	NaN	2.466398	10.602514	0.388739	0.454393	0.842026	0.951565	0.108201	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.007000	49956.400000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.63479.63479.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=63479"	AGILQLVESVR	A[+28]GILQLVESVR	D	Q	98.900000	55.000000	53.800000	38.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1221.730000	2.000000	-0.000670	-0.550000	413.000000	423.000000	0.846033	0.278200	0.331267	2.186500	0.673350	0.763150	NaN	NaN	NaN	1.063257	0.403617	0.576016	2.543551	0.914319	1.140818	NaN	NaN	NaN	1.803404	0.658968	0.247934	0.235349	0.536701	0.492557	0.108150	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.007000	49956.400000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.63475.63475.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=63475"	AGILQLVESVR	A[+28]GILQLVESVR	D	Q	99.300000	57.500000	53.800000	35.600000	Dimethyl (+28)	1211.720000	2.000000	-0.001000	-0.860000	413.000000	423.000000	0.846033	0.278200	0.331267	2.186500	0.673350	0.763150	NaN	NaN	NaN	1.063257	0.403617	0.576016	2.543551	0.914319	1.140818	NaN	NaN	NaN	1.803404	0.658968	0.247934	0.235349	0.536366	0.491964	0.108100	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3	EXOS4_HUMAN	EXOS4_HUMAN	Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3	98.900000	0.005010	26365.100000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.35691.35691.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35691"	AGLELLSDQGYR	A[+42]GLELLSDQGYR	M	V	99.700000	56.800000	52.700000	45.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1372.690000	2.000000	-0.000270	-0.200000	2.000000	13.000000	1.192833	1.771300	3.009167	0.821000	0.523700	0.637950	NaN	NaN	NaN	1.499099	2.569833	5.232423	0.955068	0.711114	0.953659	NaN	NaN	NaN	1.227083	1.640473	0.138878	0.328138	0.298950	0.685513	0.108049	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3	EXOS4_HUMAN	EXOS4_HUMAN	Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3	98.900000	0.005010	26365.100000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.35702.35702.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35702"	AGLELLSDQGYR	A[+42]GLELLSDQGYR	M	V	99.700000	67.100000	52.400000	45.300000	Acetyl (+42)	1362.680000	2.000000	0.000230	0.170000	2.000000	13.000000	1.192833	1.771300	3.009167	0.821000	0.523700	0.637950	NaN	NaN	NaN	1.499099	2.569833	5.232423	0.955068	0.711114	0.953659	NaN	NaN	NaN	1.227083	1.640473	0.138878	0.328138	0.296558	0.685101	0.107999	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Proteasome inhibitor PI31 subunit OS=Homo sapiens GN=PSMF1 PE=1 SV=2	PSMF1_HUMAN	PSMF1_HUMAN	Proteasome inhibitor PI31 subunit OS=Homo sapiens GN=PSMF1 PE=1 SV=2	99.500000	0.005760	29799.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.49130.49130.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=49130"	AGLEVLFASAAPAITCR	A[+42]GLEVLFASAAPAITC[+57]R	M	Q	99.700000	85.800000	56.300000	72.600000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1797.930000	2.000000	-0.001200	-0.650000	2.000000	18.000000	0.794433	0.367833	0.469700	0.552700	0.377400	0.682700	NaN	NaN	NaN	0.998408	0.533659	0.816728	0.642955	0.512458	1.020555	NaN	NaN	NaN	0.820681	0.523059	0.135770	0.012900	0.289564	0.026917	0.107948	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome inhibitor PI31 subunit OS=Homo sapiens GN=PSMF1 PE=1 SV=2	Q5QPM7_HUMAN	Q5QPM7_HUMAN	Proteasome (Prosome, macropain) inhibitor subunit 1 (PI31) OS=Homo sapiens GN=PSMF1 PE=2 SV=2	98.900000	0.010000	28939.300000	1.000000	3.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.50209.50209.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=50209"	AGLEVLFASAAPAITCR	A[+42]GLEVLFASAAPAITC[+57]R	M	Q	99.700000	77.200000	56.800000	61.400000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6) (+6)	1793.950000	2.000000	0.001200	0.680000	2.000000	18.000000	0.794433	0.367833	0.469700	0.552700	0.377400	0.682700	NaN	NaN	NaN	0.998408	0.533659	0.816728	0.642955	0.512458	1.020555	NaN	NaN	NaN	0.820681	0.523059	0.135770	0.012900	0.286744	0.026772	0.107848	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Proteasome inhibitor PI31 subunit OS=Homo sapiens GN=PSMF1 PE=1 SV=2	Q5QPM7_HUMAN	Q5QPM7_HUMAN	Proteasome (Prosome, macropain) inhibitor subunit 1 (PI31) OS=Homo sapiens GN=PSMF1 PE=2 SV=2	99.900000	0.004630	28939.300000	1.000000	1.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction6A.53235.53235.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=53235"	AGLEVLFASAAPAITCR	A[+42]GLEVLFASAAPAITC[+57]R	M	Q	99.700000	87.400000	56.200000	76.100000	Acetyl (+42), Carbamidomethyl (+57)	1787.930000	2.000000	0.001300	0.750000	2.000000	18.000000	0.794433	0.367833	0.469700	0.552700	0.377400	0.682700	NaN	NaN	NaN	0.998408	0.533659	0.816728	0.642955	0.512458	1.020555	NaN	NaN	NaN	0.820681	0.523059	0.135770	0.012900	0.284493	0.026660	0.107797	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum65214 scans:39416,	AGLQLLCEGLLDPQCR	A[+28]GLQLLC[+57]EGLLDPQC[+57]R	D	L	98.600000	44.000000	51.500000	31.500000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1879.950000	3.000000	-0.006400	-3.400000	128.000000	143.000000	NaN	0.727633	NaN	1.085100	0.971800	0.953500	NaN	NaN	NaN	NaN	1.055663	NaN	1.262295	1.319574	1.425368	NaN	NaN	NaN	1.262295	1.187618	NaN	0.070445	NaN	0.145503	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum65204 scans:39404,	AGLQLLCEGLLDPQCR	A[+28]GLQLLC[+57]EGLLDPQC[+57]R	D	L	99.400000	37.200000	51.700000	28.700000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57)	1869.950000	3.000000	0.000660	0.350000	128.000000	143.000000	NaN	0.727633	NaN	1.085100	0.971800	0.953500	NaN	NaN	NaN	NaN	1.055663	NaN	1.262295	1.319574	1.425368	NaN	NaN	NaN	1.262295	1.187618	NaN	0.070445	NaN	0.144899	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Dynactin subunit 3 OS=Homo sapiens GN=DCTN3	sp|O75935-2|DCTN3_HUMAN	DCTN3_HUMAN	Isoform 2 of Dynactin subunit 3 OS=Homo sapiens GN=DCTN3	94.200000	0.001320	19450.600000	1.000000	1.000000	1.000000	Spectrum20220 scans:15258,	AGLTDLQR	A[+42]GLTDLQR	M	L	98.600000	47.200000	47.000000	21.300000	Acetyl (+42)	914.480000	2.000000	-0.000490	-0.530000	2.000000	9.000000	1.079467	1.275300	2.777333	0.804350	0.273300	0.339200	NaN	NaN	NaN	1.356625	1.850227	4.829305	0.935699	0.371105	0.507063	NaN	NaN	NaN	1.146162	1.110666	0.115611	0.373984	0.241669	0.766976	0.107597	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Adapter molecule crk OS=Homo sapiens GN=CRK PE=4 SV=1	I3L297_HUMAN	I3L297_HUMAN	Adapter molecule crk OS=Homo sapiens GN=CRK PE=4 SV=1	96.400000	0.002360	25485.800000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.25868.25868.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25868"	AGNFDSEER	A[+42]GNFDSEER	M	S	99.500000	51.600000	41.600000	20.500000	Acetyl (+42)	1065.440000	2.000000	0.001300	1.200000	2.000000	10.000000	0.572433	0.278867	0.487567	NaN	NaN	3.512450	NaN	NaN	NaN	0.719408	0.404585	0.847795	NaN	NaN	5.250691	NaN	NaN	NaN	0.719408	0.404585	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Protein BRICK1 OS=Homo sapiens GN=BRK1	sp|Q8WUW1|BRK1_HUMAN	BRK1_HUMAN	Protein BRICK1 OS=Homo sapiens GN=BRK1 PE=1 SV=1	96.500000	0.002630	8727.300000	1.000000	1.000000	2.000000	Spectrum38043 scans:7771,	AGQEDPVQR	A[+42]GQEDPVQR	M	E	99.200000	52.200000	44.900000	33.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1050.500000	2.000000	0.000062	0.059000	2.000000	10.000000	0.280900	0.291867	1.182567	0.116000	0.177800	1.452950	NaN	NaN	NaN	0.353022	0.423445	2.056280	0.134943	0.241428	2.171986	NaN	NaN	NaN	0.243983	0.332437	0.267563	0.170114	0.558631	0.348462	0.107447	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.010000	73663.300000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.20796.20796.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20796"	AGQISGLNVLR	A[+28]GQISGLNVLR	D	V	99.700000	62.600000	53.600000	36.300000	Dimethyl (+28)	1154.680000	2.000000	-0.000940	-0.810000	208.000000	218.000000	9.579600	1.021767	0.402367	1.291450	0.909800	0.706300	18.060100	NaN	NaN	12.039211	1.482397	0.699646	1.502341	1.235386	1.055834	12.079122	NaN	NaN	8.540225	1.358891	0.127082	0.057702	0.265169	0.117988	0.007316	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=4 SV=1	E7EUY0_HUMAN	E7EUY0_HUMAN	DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=4 SV=1	99.700000	0.007510	465376.100000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.3609.3609.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3609"	AGSGAGVR	NaN	M	C	99.000000	48.000000	49.300000	0.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	725.370000	2.000000	-0.000160	-0.230000	2.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=4 SV=1	E7EUY0_HUMAN	E7EUY0_HUMAN	DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=4 SV=1	99.700000	0.007510	465376.100000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.3621.3621.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3621"	AGSGAGVR	NaN	M	C	99.000000	52.200000	49.200000	0.000000	Acetyl (+42), Label:13C(6) (+6)	721.380000	2.000000	0.000310	0.430000	2.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=4 SV=1	sp|P78527|PRKDC_HUMAN	PRKDC_HUMAN	DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=1 SV=3	99.700000	0.007510	469077.500000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.3610.3610.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3610"	AGSGAGVR	NaN	M	C	98.600000	47.300000	49.100000	0.110000	Acetyl (+42)	715.360000	2.000000	0.000970	1.300000	2.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1	SPF27_HUMAN	SPF27_HUMAN	Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1	98.800000	0.002500	26113.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.50583.50583.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=50583"	AGTGLVAGEVVVDALPYFDQGYEAPGVR	A[+42]GTGLVAGEVVVDALPYFDQGYEAPGVR	M	E	99.700000	91.000000	59.200000	89.100000	Acetyl (+42), Label:13C(6)15N(4) (+10)	2901.440000	3.000000	-0.004800	-1.600000	2.000000	29.000000	0.476800	0.210700	0.442000	1.138550	0.688850	0.576500	NaN	NaN	NaN	0.599221	0.305687	0.768562	1.324473	0.935366	0.861798	NaN	NaN	NaN	0.961847	0.620526	0.229522	0.298912	0.470709	0.609415	0.107000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4	SERA_HUMAN	SERA_HUMAN	D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4	100.000000	0.008640	56632.600000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.16364.16364.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16364"	AGTGVDNVDLEAATR	A[+28]GTGVDNVDLEAATR	R	K	99.700000	109.000000	53.000000	85.500000	Dimethyl (+28)	1515.750000	2.000000	-0.004400	-2.900000	76.000000	90.000000	0.854100	0.327133	0.383000	NaN	0.010600	NaN	NaN	NaN	NaN	1.073394	0.474611	0.665971	NaN	0.014393	NaN	NaN	NaN	NaN	1.073394	0.244502	NaN	0.480699	NaN	0.977741	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4	SERA_HUMAN	SERA_HUMAN	D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4	100.000000	0.010500	56632.600000	3.000000	5.000000	8.000000	Spectrum19747 scans:13604,	AGTGVDNVDLEAATR	A[+28]GTGVDNVDLEAATR	R	K	98.500000	83.500000	49.900000	65.500000	Dimethyl (+28), Label:13C(6) (+6)	1521.770000	2.000000	-0.007500	-4.900000	76.000000	90.000000	0.854100	0.327133	0.383000	NaN	0.010600	NaN	NaN	NaN	NaN	1.073394	0.474611	0.665971	NaN	0.014393	NaN	NaN	NaN	NaN	1.073394	0.244502	NaN	0.480699	NaN	0.976596	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4	SERA_HUMAN	SERA_HUMAN	D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4	100.000000	0.010500	56632.600000	3.000000	5.000000	8.000000	Spectrum46450 scans:17473,	AGTGVDNVDLEAATR	A[+28]GTGVDNVDLEAATR	R	K	99.700000	103.000000	49.500000	77.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1525.760000	2.000000	-0.003000	-1.900000	76.000000	90.000000	0.854100	0.327133	0.383000	NaN	0.010600	NaN	NaN	NaN	NaN	1.073394	0.474611	0.665971	NaN	0.014393	NaN	NaN	NaN	NaN	1.073394	0.244502	NaN	0.480699	NaN	0.976025	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	EF1G_HUMAN	EF1G_HUMAN	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	100.000000	0.040300	50101.400000	3.000000	4.000000	9.000000	Nsco_Tails_biological_replicate2_apoptosis.29032.29032.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29032"	AGTLYTYPENWR	A[+42]GTLYTYPENWR	A	A	99.600000	63.300000	50.300000	54.100000	Acetyl (+42)	1511.710000	2.000000	0.003000	2.000000	3.000000	14.000000	0.417167	1.078567	2.658200	0.853600	0.433050	0.507400	NaN	NaN	NaN	0.524276	1.564803	4.622153	0.992991	0.588024	0.758502	NaN	NaN	NaN	0.758634	1.076413	0.190744	0.271164	0.390031	0.549934	0.106704	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Methionine aminopeptidase OS=Homo sapiens GN=METAP2 PE=2 SV=1	B4DUX5_HUMAN	B4DUX5_HUMAN	Methionine aminopeptidase OS=Homo sapiens GN=METAP2 PE=2 SV=1	99.800000	0.002630	50479.600000	1.000000	1.000000	2.000000	Spectrum28892 scans:12007,	AGVEEVAASGSH	A[+42]GVEEVAASGSH	M	L	99.700000	68.600000	43.400000	53.400000	Acetyl (+42)	1154.520000	2.000000	-0.000230	-0.200000	2.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Drebrin OS=Homo sapiens GN=DBN1 PE=1 SV=4	sp|Q16643|DREB_HUMAN	DREB_HUMAN	Drebrin OS=Homo sapiens GN=DBN1 PE=1 SV=4	99.500000	0.003950	71410.600000	1.000000	2.000000	3.000000	Spectrum22883 scans:7248,	AGVSFSGHR	A[+42]GVSFSGHR	M	L	99.400000	60.000000	46.400000	17.600000	Acetyl (+42), Label:13C(6) (+6)	964.480000	2.000000	0.000420	0.440000	2.000000	10.000000	0.644667	0.314900	0.488367	0.719650	0.433000	0.601700	1.042100	1.997700	4.022143	0.810188	0.456862	0.849186	0.837167	0.587956	0.899469	0.696987	0.850801	1.927421	0.781447	0.631873	0.003006	0.031994	0.006140	0.064697	0.007262	0.125180	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Drebrin OS=Homo sapiens GN=DBN1 PE=1 SV=4	sp|Q16643|DREB_HUMAN	DREB_HUMAN	Drebrin OS=Homo sapiens GN=DBN1 PE=1 SV=4	98.900000	0.010000	71410.600000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.10535.10535.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10535"	AGVSFSGHR	A[+42]GVSFSGHR	M	L	99.700000	73.200000	48.800000	50.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	968.470000	2.000000	0.000630	0.650000	2.000000	10.000000	0.644667	0.314900	0.488367	0.719650	0.433000	0.601700	1.042100	1.997700	4.022143	0.810188	0.456862	0.849186	0.837167	0.587956	0.899469	0.696987	0.850801	1.927421	0.781447	0.631873	0.003006	0.031994	0.006136	0.064211	0.007252	0.124195	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction3A (Nsco_Tails_biological_replicate_3_fraction3A_127089)	Drebrin OS=Homo sapiens GN=DBN1 PE=1 SV=4	sp|Q16643|DREB_HUMAN	DREB_HUMAN	Drebrin OS=Homo sapiens GN=DBN1 PE=1 SV=4	99.200000	0.159000	71410.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction3A.7443.7443.2 File:"Nsco_Tails_biological_replicate_3_fraction3A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7443"	AGVSFSGHR	A[+42]GVSFSGHR	M	L	99.700000	73.400000	48.700000	47.400000	Acetyl (+42)	958.460000	2.000000	0.000670	0.700000	2.000000	10.000000	0.644667	0.314900	0.488367	0.719650	0.433000	0.601700	1.042100	1.997700	4.022143	0.810188	0.456862	0.849186	0.837167	0.587956	0.899469	0.696987	0.850801	1.927421	0.781447	0.631873	0.003006	0.031994	0.006107	0.064100	0.007248	0.123224	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.162000	15036.300000	9.000000	26.000000	123.000000	Spectrum73584 scans:51763,	AGWNAYIDNLMADGTCQDAAIVGY	NaN	M	K	98.900000	25.000000	42.500000	19.300000	Acetyl (+42), Oxidation (+16), Carbamidomethyl (+57)	2646.140000	3.000000	0.000920	0.350000	2.000000	25.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3	ATPB_HUMAN	ATPB_HUMAN	ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3	100.000000	0.006590	56542.500000	3.000000	5.000000	5.000000	Spectrum63666 scans:37692,	AIAELGIYPAVDPLDSTSR	A[+28]IAELGIYPAVDPLDSTSR	R	I	98.800000	44.600000	53.600000	31.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2025.070000	3.000000	0.004600	2.300000	388.000000	406.000000	0.375867	0.262000	0.588267	0.058050	0.090650	1.845750	NaN	NaN	NaN	0.472372	0.380114	1.022895	0.067529	0.123091	2.759175	NaN	NaN	NaN	0.269951	0.251602	0.409603	0.300630	0.830696	0.597815	0.106165	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3	ATPB_HUMAN	ATPB_HUMAN	ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3	100.000000	0.006590	56542.500000	3.000000	5.000000	5.000000	Spectrum63613 scans:37632,	AIAELGIYPAVDPLDSTSR	A[+28]IAELGIYPAVDPLDSTSR	R	I	99.700000	54.000000	53.400000	41.900000	Dimethyl (+28)	2015.060000	3.000000	0.001800	0.880000	388.000000	406.000000	0.375867	0.262000	0.588267	0.058050	0.090650	1.845750	NaN	NaN	NaN	0.472372	0.380114	1.022895	0.067529	0.123091	2.759175	NaN	NaN	NaN	0.269951	0.251602	0.409603	0.300630	0.830211	0.597473	0.106116	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3	ATPB_HUMAN	ATPB_HUMAN	ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3	100.000000	0.006590	56542.500000	3.000000	5.000000	5.000000	Spectrum63632 scans:37653,	AIAELGIYPAVDPLDSTSR	A[+28]IAELGIYPAVDPLDSTSR	R	I	99.700000	60.700000	53.700000	44.500000	Dimethyl (+28), Label:13C(6) (+6)	2021.080000	3.000000	-0.000420	-0.210000	388.000000	406.000000	0.375867	0.262000	0.588267	0.058050	0.090650	1.845750	NaN	NaN	NaN	0.472372	0.380114	1.022895	0.067529	0.123091	2.759175	NaN	NaN	NaN	0.269951	0.251602	0.409603	0.300630	0.829726	0.597131	0.105922	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.025900	28786.800000	5.000000	8.000000	9.000000	Nsco_Tails_biological_replicate1_apoptosis.29658.29658.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29658"	AIDQMWLPVVR	A[+28]IDQMWLPVVR	D	T	99.300000	59.400000	54.800000	40.200000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1380.750000	2.000000	0.000760	0.550000	73.000000	83.000000	0.668167	0.380200	0.569900	0.020050	0.048150	7.986800	NaN	NaN	NaN	0.839722	0.551601	0.990958	0.023324	0.065381	11.939308	NaN	NaN	NaN	0.431523	0.308491	0.482322	0.424892	0.976462	0.843464	0.105873	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.025900	28786.800000	5.000000	8.000000	9.000000	Nsco_Tails_biological_replicate1_apoptosis.29906.29906.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29906"	AIDQMWLPVVR	A[+28]IDQMWLPVVR	D	T	99.700000	68.200000	54.600000	46.500000	Dimethyl (+28), Oxidation (+16)	1370.740000	2.000000	-0.001800	-1.300000	73.000000	83.000000	0.668167	0.380200	0.569900	0.020050	0.048150	7.986800	NaN	NaN	NaN	0.839722	0.551601	0.990958	0.023324	0.065381	11.939308	NaN	NaN	NaN	0.431523	0.308491	0.482322	0.424892	0.975893	0.842982	0.105777	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.009330	28786.800000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.62737.62737.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=62737"	AIDQMWLPVVR	A[+28]IDQMWLPVVR	D	T	99.700000	72.800000	54.800000	56.700000	Dimethyl (+28)	1354.740000	2.000000	-0.000800	-0.590000	73.000000	83.000000	0.668167	0.380200	0.569900	0.020050	0.048150	7.986800	NaN	NaN	NaN	0.839722	0.551601	0.990958	0.023324	0.065381	11.939308	NaN	NaN	NaN	0.431523	0.308491	0.482322	0.424892	0.975324	0.842500	0.105728	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.032900	140943.500000	9.000000	17.000000	25.000000	Spectrum13038 scans:48777,	AIEPPPLDAVIEAEHTLR	A[+28]IEPPPLDAVIEAEHTLR	K	E	99.700000	55.100000	53.800000	37.300000	Dimethyl (+28), Label:13C(6) (+6)	2004.100000	3.000000	-0.001600	-0.820000	820.000000	837.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Annexin A5 OS=Homo sapiens GN=ANXA5 PE=1 SV=2	ANXA5_HUMAN	ANXA5_HUMAN	Annexin A5 OS=Homo sapiens GN=ANXA5 PE=1 SV=2	100.000000	0.007000	35920.600000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.53363.53363.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=53363"	AIKQVYEEEYGSSLEDDVVGDTSGYYQR	A[+28]IKQVYEEEYGSSLEDDVVGDTSGYYQR	R	M	99.500000	69.700000	53.800000	68.800000	Dimethyl (+28), Dimethyl (+28)	3255.490000	3.000000	-0.022000	-6.600000	124.000000	151.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2	sp|P09960|LKHA4_HUMAN	LKHA4_HUMAN	Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2	100.000000	0.010500	69269.100000	3.000000	7.000000	8.000000	Spectrum57061 scans:29693,	AILPCQDTPSVKLTY	A[+28]ILPC[+57]QDTPSVKLTY	R	T	99.200000	58.700000	52.700000	42.800000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36)	1768.950000	2.000000	-0.001700	-0.960000	143.000000	157.000000	66.192400	34.091467	0.315433	11.891200	90.385550	9.629450	NaN	NaN	NaN	83.187634	49.460489	0.548484	13.833009	122.731414	14.394873	NaN	NaN	NaN	48.510321	86.095952	0.000000	0.000000	0.000000	0.000000	0.105487	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2	sp|P09960|LKHA4_HUMAN	LKHA4_HUMAN	Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2	100.000000	0.016200	69269.100000	3.000000	6.000000	7.000000	Nsco_Tails_biological_replicate_3_fraction6A.29713.29713.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29713"	AILPCQDTPSVKLTY	A[+28]ILPC[+57]QDTPSVKLTY	R	T	99.700000	78.300000	56.800000	63.800000	Dimethyl (+28), Carbamidomethyl (+57), Dimethyl (+28)	1760.940000	2.000000	-0.001900	-1.100000	143.000000	157.000000	66.192400	34.091467	0.315433	11.891200	90.385550	9.629450	NaN	NaN	NaN	83.187634	49.460489	0.548484	13.833009	122.731414	14.394873	NaN	NaN	NaN	48.510321	86.095952	0.000000	0.000000	0.000000	0.000000	0.105247	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1	RL24_HUMAN	RL24_HUMAN	60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1	100.000000	0.003950	17761.500000	1.000000	2.000000	3.000000	Spectrum20880 scans:19073,	AITGASLADIM	A[+28]ITGASLADIM	R	A	99.500000	59.500000	48.000000	38.200000	Dimethyl (+28), Oxidation (+16)	1105.570000	2.000000	-0.000017	-0.015000	81.000000	91.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1	RL24_HUMAN	RL24_HUMAN	60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1	100.000000	0.003950	17761.500000	1.000000	2.000000	3.000000	Spectrum12980 scans:48684,	AITGASLADIM	A[+28]ITGASLADIM	R	A	99.600000	60.300000	48.300000	20.500000	Dimethyl (+28)	1089.570000	2.000000	-0.000340	-0.310000	81.000000	91.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1	RL24_HUMAN	RL24_HUMAN	60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1	96.600000	0.002360	17761.500000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.50080.50080.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=50080"	AITGASLADIMAKR	A[+28]ITGASLADIMAKR	R	N	99.500000	69.200000	55.800000	54.400000	Dimethyl (+28), Dimethyl (+28)	1472.840000	3.000000	0.000700	0.480000	81.000000	94.000000	7.742133	1.684900	0.217767	0.326900	0.423400	1.102200	NaN	NaN	NaN	9.729965	2.444482	0.378659	0.380282	0.574920	1.647657	NaN	NaN	NaN	5.055124	1.509701	0.475131	0.352945	0.943195	0.694286	0.105056	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Poly(rC)-binding protein 1 OS=Homo sapiens GN=PCBP1 PE=1 SV=2	PCBP1_HUMAN	PCBP1_HUMAN	Poly(rC)-binding protein 1 OS=Homo sapiens GN=PCBP1 PE=1 SV=2	100.000000	0.001320	37480.200000	1.000000	1.000000	1.000000	Spectrum61176 scans:34756,	AITIAGVPQSVTECVKQIC	A[+28]ITIAGVPQSVTEC[+57]VKQIC[+57]	R	L	99.000000	39.800000	54.100000	22.300000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57)	2137.140000	3.000000	0.002200	1.000000	145.000000	163.000000	4.384400	2.105933	0.358267	NaN	0.699400	NaN	NaN	NaN	NaN	5.510117	3.055324	0.622964	NaN	0.949691	NaN	NaN	NaN	NaN	5.510117	2.002508	NaN	0.308146	NaN	0.605816	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	RSSA_HUMAN	RSSA_HUMAN	40S ribosomal protein SA OS=Homo sapiens GN=RPSA PE=1 SV=4	100.000000	0.011500	32836.100000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.27681.27681.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27681"	AIVAIENPADVSVISSR	A[+28]IVAIENPADVSVISSR	R	N	99.700000	80.100000	57.400000	63.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1777.980000	2.000000	-0.005000	-2.800000	64.000000	80.000000	0.507767	0.247467	0.490467	1.583650	4.692050	21.818150	NaN	NaN	NaN	0.638138	0.359029	0.852837	1.842257	6.371173	32.615517	NaN	NaN	NaN	1.240198	3.365101	0.287716	0.464163	0.569849	0.912030	0.104913	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.039500	29487.900000	8.000000	18.000000	30.000000	Spectrum57349 scans:30056,	AIVAIENPADVSVISSR	A[+28]IVAIENPADVSVISSR	R	N	99.700000	118.000000	52.800000	86.900000	Dimethyl (+28)	1767.970000	2.000000	-0.002100	-1.200000	64.000000	80.000000	0.507767	0.247467	0.490467	1.583650	4.692050	21.818150	NaN	NaN	NaN	0.638138	0.359029	0.852837	1.842257	6.371173	32.615517	NaN	NaN	NaN	1.240198	3.365101	0.287716	0.464163	0.569524	0.911514	0.104818	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.039500	29487.900000	8.000000	18.000000	30.000000	Spectrum57345 scans:30051,	AIVAIENPADVSVISSR	A[+28]IVAIENPADVSVISSR	R	N	99.700000	122.000000	52.800000	92.400000	Dimethyl (+28), Label:13C(6) (+6)	1773.990000	2.000000	-0.001700	-0.930000	64.000000	80.000000	0.507767	0.247467	0.490467	1.583650	4.692050	21.818150	NaN	NaN	NaN	0.638138	0.359029	0.852837	1.842257	6.371173	32.615517	NaN	NaN	NaN	1.240198	3.365101	0.287716	0.464163	0.568551	0.910999	0.104771	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit C OS=Homo sapiens GN=EIF3C PE=1 SV=1	sp|Q99613-2|EIF3C_HUMAN	EIF3C_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit C OS=Homo sapiens GN=EIF3C	100.000000	0.006590	0.000000	4.000000	5.000000	5.000000	Spectrum10768 scans:38638,	AKELLGQGLLLR	A[+28]KELLGQGLLLR	R	S	99.700000	45.000000	45.100000	26.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1375.920000	3.000000	0.000590	0.430000	0.000000	0.000000	8.255300	3.619767	0.331767	NaN	NaN	NaN	NaN	NaN	NaN	10.374890	5.251620	0.576885	NaN	NaN	NaN	NaN	NaN	NaN	10.374890	5.251620	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.015800	72316.700000	7.000000	10.000000	12.000000	Spectrum60463 scans:33833,	AKFEELNMDLFR	A[+28]KFEELNMDLFR	R	S	99.300000	38.200000	51.800000	20.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1577.850000	3.000000	0.001300	0.800000	325.000000	336.000000	0.193133	0.169133	0.543533	0.620150	1.364300	2.538800	NaN	NaN	NaN	0.242721	0.245382	0.945111	0.721419	1.852536	3.795201	NaN	NaN	NaN	0.482070	1.048959	0.293383	0.416163	0.577448	0.809465	0.104676	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	EIF3D_HUMAN	EIF3D_HUMAN	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	100.000000	0.005270	63955.800000	3.000000	4.000000	4.000000	Spectrum12690 scans:46861,	AKFMTPVIQDNPSGWGPC	A[+42]KFM[+16]TPVIQDNPSGWGPC[+57]	M	A	99.600000	45.100000	48.600000	39.600000	Acetyl (+42), Dimethyl:2H(4) (+32), Oxidation (+16), Carbamidomethyl (+57)	2093.980000	3.000000	-0.005200	-2.500000	2.000000	19.000000	5.245600	73.517133	11.489133	28.899000	12.815700	0.433250	NaN	NaN	NaN	6.592434	106.659928	19.977627	33.618147	17.401996	0.647657	NaN	NaN	NaN	20.105291	62.030962	0.128949	0.000000	0.253658	0.000000	0.104628	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	EIF3D_HUMAN	EIF3D_HUMAN	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	100.000000	0.010000	63955.800000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33854.33854.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33854"	AKFMTPVIQDNPSGWGPC	A[+42]KFM[+16]TPVIQDNPSGWGPC[+57]	M	A	99.700000	64.400000	51.700000	63.900000	Acetyl (+42), Dimethyl (+28), Oxidation (+16), Carbamidomethyl (+57)	2089.970000	2.000000	0.005000	2.400000	2.000000	19.000000	5.245600	73.517133	11.489133	28.899000	12.815700	0.433250	NaN	NaN	NaN	6.592434	106.659928	19.977627	33.618147	17.401996	0.647657	NaN	NaN	NaN	20.105291	62.030962	0.128949	0.000000	0.253514	0.000000	0.104534	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	EIF3D_HUMAN	EIF3D_HUMAN	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	100.000000	0.013400	63955.800000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.28998.28998.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28998"	AKFMTPVIQDNPSGWGPC	A[+42]KFM[+16]TPVIQDNPSGWGPC[+57]	M	A	99.700000	62.500000	51.900000	61.700000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Oxidation (+16), Carbamidomethyl (+57)	2097.970000	2.000000	-0.003000	-1.400000	2.000000	19.000000	5.245600	73.517133	11.489133	28.899000	12.815700	0.433250	NaN	NaN	NaN	6.592434	106.659928	19.977627	33.618147	17.401996	0.647657	NaN	NaN	NaN	20.105291	62.030962	0.128949	0.000000	0.253371	0.000000	0.104439	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	EIF3D_HUMAN	EIF3D_HUMAN	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	100.000000	0.010000	63955.800000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.36464.36464.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36464"	AKFMTPVIQDNPSGWGPCAVPEQFR	A[+42]KFMTPVIQDNPSGWGPC[+57]AVPEQFR	M	D	99.500000	79.400000	56.800000	78.300000	Acetyl (+42), Dimethyl (+28), Oxidation (+16), Carbamidomethyl (+57)	2917.390000	3.000000	0.003600	1.200000	2.000000	26.000000	2.626300	0.423100	0.161100	NaN	NaN	0.314150	NaN	NaN	NaN	3.300616	0.613841	0.280125	NaN	NaN	0.469617	NaN	NaN	NaN	3.300616	0.613841	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	EIF3D_HUMAN	EIF3D_HUMAN	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	100.000000	0.013400	63955.800000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.34189.34189.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34189"	AKFMTPVIQDNPSGWGPCAVPEQFR	A[+42]KFMTPVIQDNPSGWGPC[+57]AVPEQFR	M	D	99.300000	79.500000	56.900000	79.500000	Acetyl (+42), Dimethyl (+28), Carbamidomethyl (+57)	2901.390000	3.000000	-0.006000	-2.100000	2.000000	26.000000	2.626300	0.423100	0.161100	NaN	NaN	0.314150	NaN	NaN	NaN	3.300616	0.613841	0.280125	NaN	NaN	0.469617	NaN	NaN	NaN	3.300616	0.613841	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum70386 scans:45575,	AKFYPEDVSEELIQDITQR	A[+28]KFYPEDVSEELIQDITQR	R	L	99.700000	62.600000	54.700000	44.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2346.230000	3.000000	-0.004800	-2.100000	82.000000	100.000000	12.108533	7.046200	0.642267	1.333450	24.483100	15.425900	NaN	NaN	NaN	15.217461	10.222749	1.116791	1.551200	33.244755	23.059870	NaN	NaN	NaN	8.384330	21.733752	0.402028	0.000000	0.786380	0.000000	0.104251	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum70468 scans:45678,	AKFYPEDVSEELIQDITQR	A[+28]KFYPEDVSEELIQDITQR	R	L	99.700000	59.100000	54.200000	41.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2354.210000	3.000000	0.000045	0.019000	82.000000	100.000000	12.108533	7.046200	0.642267	1.333450	24.483100	15.425900	NaN	NaN	NaN	15.217461	10.222749	1.116791	1.551200	33.244755	23.059870	NaN	NaN	NaN	8.384330	21.733752	0.402028	0.000000	0.782411	0.000000	0.104204	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.048600	67803.800000	7.000000	14.000000	21.000000	Nsco_Tails_biological_replicate_3_fraction6A.45642.45642.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=45642"	AKFYPEDVSEELIQDITQR	A[+28]KFYPEDVSEELIQDITQR	R	L	98.900000	74.000000	58.300000	58.500000	Dimethyl (+28), Dimethyl (+28)	2336.190000	3.000000	-0.000460	-0.200000	82.000000	100.000000	12.108533	7.046200	0.642267	1.333450	24.483100	15.425900	NaN	NaN	NaN	15.217461	10.222749	1.116791	1.551200	33.244755	23.059870	NaN	NaN	NaN	8.384330	21.733752	0.402028	0.000000	0.781972	0.000000	0.104157	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.027700	40405.300000	7.000000	17.000000	21.000000	Spectrum33533 scans:2620,	AKGDDALEKR	NaN	N	F	99.700000	38.100000	48.300000	17.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1199.740000	3.000000	-0.000540	-0.450000	310.000000	319.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.027700	40405.300000	7.000000	17.000000	21.000000	Spectrum33543 scans:2631,	AKGDDALEKR	NaN	N	F	99.700000	44.500000	49.700000	19.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1211.710000	3.000000	0.000017	0.014000	310.000000	319.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	SF3B1_HUMAN	SF3B1_HUMAN	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	100.000000	0.013200	145817.300000	5.000000	8.000000	10.000000	Spectrum19120 scans:11903,	AKIAKTHEDIEAQIR	A[+42]KIAKTHEDIEAQIR	M	E	99.700000	48.400000	52.900000	37.200000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1846.050000	3.000000	-0.000960	-0.520000	2.000000	16.000000	7.445267	2.233433	0.323100	36.465400	11.761800	0.305100	NaN	NaN	NaN	9.356877	3.240304	0.561815	42.420125	15.970942	0.456088	NaN	NaN	NaN	25.888501	9.605623	0.021144	0.300512	0.040783	0.577077	0.103877	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.040800	82573.600000	11.000000	21.000000	31.000000	Spectrum55941 scans:28330,	AKLAQDFLDSQNLSAYNTR	A[+28]KLAQDFLDSQNLSAYNTR	D	L	98.600000	36.000000	54.400000	18.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2220.180000	3.000000	-0.001100	-0.500000	181.000000	199.000000	NaN	NaN	NaN	5.371950	3.425000	0.650400	NaN	NaN	NaN	NaN	NaN	NaN	6.249178	4.650689	0.972270	NaN	NaN	NaN	6.249178	4.650689	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	NUCL_HUMAN	NUCL_HUMAN	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	100.000000	0.007900	76597.900000	6.000000	6.000000	6.000000	Spectrum5841 scans:24742,	AKNDLAVVDVR	A[+28]KNDLAVVDVR	F	I	99.700000	41.500000	49.800000	23.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1272.750000	3.000000	0.000130	0.098000	332.000000	342.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5	PYGB_HUMAN	PYGB_HUMAN	Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5	100.000000	0.009220	96680.300000	2.000000	5.000000	7.000000	Spectrum35414 scans:4741,	AKPLTDSEKR	A[+42]KPLTDSEKR	M	K	99.600000	40.200000	48.900000	23.900000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1255.770000	3.000000	-0.001500	-1.200000	2.000000	11.000000	9.008733	2.463067	1.266000	0.670400	0.232550	0.397550	NaN	NaN	NaN	11.321771	3.573460	2.201356	0.779875	0.315772	0.594290	NaN	NaN	NaN	6.050823	1.944616	0.450452	0.443890	0.867407	0.850994	0.103737	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5	PYGB_HUMAN	PYGB_HUMAN	Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5	100.000000	0.009220	96680.300000	2.000000	5.000000	7.000000	Spectrum35434 scans:4763,	AKPLTDSEKR	A[+42]KPLTDSEKR	M	K	99.700000	49.200000	50.000000	19.100000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1267.730000	3.000000	-0.001100	-0.880000	2.000000	11.000000	9.008733	2.463067	1.266000	0.670400	0.232550	0.397550	NaN	NaN	NaN	11.321771	3.573460	2.201356	0.779875	0.315772	0.594290	NaN	NaN	NaN	6.050823	1.944616	0.450452	0.443890	0.866926	0.849118	0.103551	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2	PDIA4_HUMAN	PDIA4_HUMAN	Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2	100.000000	0.018400	72916.000000	3.000000	7.000000	14.000000	Spectrum38870 scans:8736,	AKVDATAETDLAKR	A[+28]KVDATAETDLAKR	L	F	99.700000	56.100000	51.700000	43.400000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1597.920000	3.000000	-0.000740	-0.460000	233.000000	246.000000	1.289133	NaN	4.160633	0.680200	NaN	NaN	NaN	NaN	NaN	1.620125	NaN	7.234626	0.791275	NaN	NaN	NaN	NaN	NaN	1.205700	NaN	0.210766	NaN	0.405409	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Paraneoplastic antigen Ma2 OS=Homo sapiens GN=PNMA2 PE=1 SV=2	PNMA2_HUMAN	PNMA2_HUMAN	Paraneoplastic antigen Ma2 OS=Homo sapiens GN=PNMA2 PE=1 SV=2	99.200000	0.010000	41491.700000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.50554.50554.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=50554"	ALALLEDWCR	A[+42]LALLEDWC[+57]R	M	I	98.900000	52.600000	51.600000	36.600000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1297.640000	2.000000	0.002400	1.900000	2.000000	11.000000	0.457000	0.093567	0.435400	0.728150	0.255450	0.350300	NaN	NaN	NaN	0.574337	0.135748	0.757086	0.847055	0.346867	0.523656	NaN	NaN	NaN	0.710696	0.241307	0.120680	0.262521	0.231999	0.501622	0.103412	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Paraneoplastic antigen Ma2 OS=Homo sapiens GN=PNMA2 PE=1 SV=2	PNMA2_HUMAN	PNMA2_HUMAN	Paraneoplastic antigen Ma2 OS=Homo sapiens GN=PNMA2 PE=1 SV=2	99.300000	0.008960	41491.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.42916.42916.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42916"	ALALLEDWCR	A[+42]LALLEDWC[+57]R	M	I	99.700000	69.200000	51.100000	45.200000	Acetyl (+42), Carbamidomethyl (+57)	1287.630000	2.000000	-0.000670	-0.520000	2.000000	11.000000	0.457000	0.093567	0.435400	0.728150	0.255450	0.350300	NaN	NaN	NaN	0.574337	0.135748	0.757086	0.847055	0.346867	0.523656	NaN	NaN	NaN	0.710696	0.241307	0.120680	0.262521	0.231871	0.501346	0.103320	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	sp|P28074|PSB5_HUMAN	PSB5_HUMAN	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	100.000000	0.008640	28463.000000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.31771.31771.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31771"	ALASVLER	A[+42]LASVLER	M	P	99.000000	54.100000	51.800000	16.700000	Acetyl (+42), Label:13C(6)15N(4) (+10)	909.520000	2.000000	0.000260	0.280000	2.000000	9.000000	0.547800	0.351500	0.645500	0.727400	0.556800	0.767150	1.451043	20.413357	3.521557	0.688450	0.509962	1.122413	0.846183	0.756059	1.146797	0.970500	8.693855	1.687539	0.835044	3.319959	0.009417	0.342184	0.018073	0.652047	0.007041	0.081724	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	sp|P28074|PSB5_HUMAN	PSB5_HUMAN	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	100.000000	0.005270	28463.000000	2.000000	4.000000	4.000000	Spectrum23275 scans:20094,	ALASVLER	A[+42]LASVLER	M	P	99.000000	64.400000	48.100000	30.100000	Acetyl (+42), Label:13C(6) (+6)	905.530000	2.000000	-0.000078	-0.086000	2.000000	9.000000	0.547800	0.351500	0.645500	0.727400	0.556800	0.767150	1.451043	20.413357	3.521557	0.688450	0.509962	1.122413	0.846183	0.756059	1.146797	0.970500	8.693855	1.687539	0.835044	3.319959	0.009417	0.342184	0.018063	0.651689	0.007029	0.080473	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	sp|P28074|PSB5_HUMAN	PSB5_HUMAN	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	100.000000	0.005270	28463.000000	2.000000	4.000000	4.000000	Spectrum23274 scans:20093,	ALASVLER	A[+42]LASVLER	M	P	99.000000	64.200000	47.600000	30.000000	Acetyl (+42)	899.510000	2.000000	0.000210	0.230000	2.000000	9.000000	0.547800	0.351500	0.645500	0.727400	0.556800	0.767150	1.451043	20.413357	3.521557	0.688450	0.509962	1.122413	0.846183	0.756059	1.146797	0.970500	8.693855	1.687539	0.835044	3.319959	0.009417	0.342184	0.018053	0.649906	0.007026	0.080065	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoamyl acetate-hydrolyzing esterase 1 homolog OS=Homo sapiens GN=IAH1 PE=1 SV=1	IAH1_HUMAN	IAH1_HUMAN	Isoamyl acetate-hydrolyzing esterase 1 homolog OS=Homo sapiens GN=IAH1 PE=1 SV=1	100.000000	0.025000	27581.700000	1.000000	4.000000	19.000000	Spectrum68596 scans:43327,	ALCEAAGCGSALLWPR	A[+42]LC[+57]EAAGC[+57]GSALLWPR	M	L	99.700000	88.600000	48.100000	76.000000	Acetyl (+42), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1782.840000	2.000000	0.000031	0.018000	2.000000	17.000000	0.714300	0.375000	0.530567	0.862200	0.830200	0.940500	NaN	NaN	NaN	0.897700	0.544056	0.922564	1.002995	1.127300	1.405935	NaN	NaN	NaN	0.950348	0.835678	0.035232	0.213746	0.067136	0.405744	0.102906	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoamyl acetate-hydrolyzing esterase 1 homolog OS=Homo sapiens GN=IAH1 PE=1 SV=1	IAH1_HUMAN	IAH1_HUMAN	Isoamyl acetate-hydrolyzing esterase 1 homolog OS=Homo sapiens GN=IAH1 PE=1 SV=1	100.000000	0.025000	27581.700000	1.000000	4.000000	19.000000	Spectrum68716 scans:43470,	ALCEAAGCGSALLWPR	A[+42]LC[+57]EAAGC[+57]GSALLWPR	M	L	99.700000	106.000000	49.000000	95.700000	Acetyl (+42), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6) (+6)	1778.850000	2.000000	-0.001600	-0.890000	2.000000	17.000000	0.714300	0.375000	0.530567	0.862200	0.830200	0.940500	NaN	NaN	NaN	0.897700	0.544056	0.922564	1.002995	1.127300	1.405935	NaN	NaN	NaN	0.950348	0.835678	0.035232	0.213746	0.067099	0.405522	0.102861	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoamyl acetate-hydrolyzing esterase 1 homolog OS=Homo sapiens GN=IAH1 PE=1 SV=1	IAH1_HUMAN	IAH1_HUMAN	Isoamyl acetate-hydrolyzing esterase 1 homolog OS=Homo sapiens GN=IAH1 PE=1 SV=1	100.000000	0.025000	27581.700000	1.000000	4.000000	19.000000	Spectrum68825 scans:43603,	ALCEAAGCGSALLWPR	A[+42]LC[+57]EAAGC[+57]GSALLWPR	M	L	99.700000	107.000000	47.700000	91.300000	Acetyl (+42), Carbamidomethyl (+57), Carbamidomethyl (+57)	1772.830000	2.000000	-0.002300	-1.300000	2.000000	17.000000	0.714300	0.375000	0.530567	0.862200	0.830200	0.940500	NaN	NaN	NaN	0.897700	0.544056	0.922564	1.002995	1.127300	1.405935	NaN	NaN	NaN	0.950348	0.835678	0.035232	0.213746	0.066915	0.404637	0.102815	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.012500	140943.500000	3.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.21401.21401.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21401"	ALDANDELTPLGR	A[+28]LDANDELTPLGR	D	I	99.700000	71.700000	54.100000	51.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1421.740000	2.000000	-0.001200	-0.870000	841.000000	853.000000	7.458900	3.277367	0.605800	0.669650	0.542850	0.810850	NaN	NaN	NaN	9.374010	4.754860	1.053382	0.779002	0.737117	1.212123	NaN	NaN	NaN	5.076506	2.745989	0.447217	0.402088	0.848929	0.760766	0.102678	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.012500	140943.500000	3.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.21408.21408.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21408"	ALDANDELTPLGR	A[+28]LDANDELTPLGR	D	I	99.700000	87.900000	54.000000	74.100000	Dimethyl (+28)	1411.730000	2.000000	-0.002000	-1.400000	841.000000	853.000000	7.458900	3.277367	0.605800	0.669650	0.542850	0.810850	NaN	NaN	NaN	9.374010	4.754860	1.053382	0.779002	0.737117	1.212123	NaN	NaN	NaN	5.076506	2.745989	0.447217	0.402088	0.848465	0.759111	0.102587	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	H0YGR4_HUMAN	H0YGR4_HUMAN	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	100.000000	0.014500	22099.800000	3.000000	8.000000	11.000000	Spectrum65613 scans:39860,	ALDDISESIKELQFYR	A[+28]LDDISESIKELQFYR	R	N	99.700000	57.700000	53.500000	41.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2000.060000	3.000000	0.000630	0.310000	151.000000	166.000000	NaN	NaN	NaN	6.132650	1.427550	1.397100	NaN	NaN	NaN	NaN	NaN	NaN	7.134099	1.938421	2.088497	NaN	NaN	NaN	7.134099	1.938421	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	XRCC5_HUMAN	XRCC5_HUMAN	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	100.000000	0.009220	82689.100000	3.000000	4.000000	7.000000	Spectrum11353 scans:40372,	ALDDLDMVAIVR	A[+28]LDDLDM[+16]VAIVR	H	Y	99.200000	59.400000	50.700000	41.100000	Dimethyl (+28), Oxidation (+16), Label:13C(6) (+6)	1379.740000	2.000000	-0.002100	-1.500000	383.000000	394.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1	PRS8_HUMAN	PRS8_HUMAN	26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1	100.000000	0.039500	45609.100000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.18013.18013.3 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18013"	ALDGPEQMELEEGKAGSGLR	A[+42]LDGPEQMELEEGKAGSGLR	M	Q	99.000000	64.000000	54.200000	57.400000	Acetyl (+42), Oxidation (+16), Dimethyl (+28)	2172.040000	3.000000	-0.001200	-0.550000	2.000000	21.000000	32.872033	9.921933	0.248433	59.342100	13.613400	0.234700	NaN	NaN	NaN	41.312094	14.394912	0.431983	69.032543	18.485165	0.350848	NaN	NaN	NaN	55.172319	16.440039	0.000000	0.000000	0.000000	0.000000	0.102360	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1	PRS8_HUMAN	PRS8_HUMAN	26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1	100.000000	0.005270	45609.100000	2.000000	3.000000	4.000000	Spectrum20769 scans:18006,	ALDGPEQMELEEGKAGSGLR	A[+42]LDGPEQMELEEGKAGSGLR	M	Q	99.700000	59.900000	50.800000	55.500000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2190.060000	3.000000	-0.001500	-0.700000	2.000000	21.000000	32.872033	9.921933	0.248433	59.342100	13.613400	0.234700	NaN	NaN	NaN	41.312094	14.394912	0.431983	69.032543	18.485165	0.350848	NaN	NaN	NaN	55.172319	16.440039	0.000000	0.000000	0.000000	0.000000	0.102315	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1	PRS8_HUMAN	PRS8_HUMAN	26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1	100.000000	0.004480	45609.100000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.23316.23316.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23316"	ALDGPEQMELEEGKAGSGLR	A[+42]LDGPEQMELEEGKAGSGLR	M	Q	99.700000	103.000000	55.800000	101.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2174.070000	2.000000	0.000640	0.300000	2.000000	21.000000	32.872033	9.921933	0.248433	59.342100	13.613400	0.234700	NaN	NaN	NaN	41.312094	14.394912	0.431983	69.032543	18.485165	0.350848	NaN	NaN	NaN	55.172319	16.440039	0.000000	0.000000	0.000000	0.000000	0.102224	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum42075 scans:12441,	ALELEQER	NaN	R	K	98.700000	48.900000	48.600000	15.000000	Dimethyl (+28), Label:13C(6) (+6)	1020.550000	2.000000	-0.000630	-0.620000	372.000000	379.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1 PE=1 SV=1	SPT4H_HUMAN	SPT4H_HUMAN	Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1 PE=1 SV=1	98.900000	0.007510	13175.300000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.21430.21430.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21430"	ALETVPKDLR	A[+42]LETVPKDLR	M	H	99.500000	55.500000	53.500000	41.600000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1220.740000	2.000000	-0.000330	-0.270000	2.000000	11.000000	19.073600	13.723833	0.658367	37.921000	20.389250	0.544450	NaN	NaN	1.344457	23.970843	19.910775	1.144786	44.113422	27.685858	0.813887	NaN	NaN	0.644267	34.042132	23.798316	0.000000	0.000000	0.000000	0.000000	0.102134	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1 PE=1 SV=1	SPT4H_HUMAN	SPT4H_HUMAN	Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1 PE=1 SV=1	98.900000	0.007510	13175.300000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.21451.21451.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21451"	ALETVPKDLR	A[+42]LETVPKDLR	M	H	99.700000	62.100000	54.100000	40.600000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1228.710000	2.000000	-0.000770	-0.620000	2.000000	11.000000	19.073600	13.723833	0.658367	37.921000	20.389250	0.544450	NaN	NaN	1.344457	23.970843	19.910775	1.144786	44.113422	27.685858	0.813887	NaN	NaN	0.644267	34.042132	23.798316	0.000000	0.000000	0.000000	0.000000	0.102089	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction4A (Nsco_Tails_biological_replicate_3_fraction4A_127088)	Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1 PE=1 SV=1	SPT4H_HUMAN	SPT4H_HUMAN	Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1 PE=1 SV=1	99.100000	0.100000	13175.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction4A.13843.13843.2 File:"Nsco_Tails_biological_replicate_3_fraction4A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13843"	ALETVPKDLR	A[+42]LETVPKDLR	M	H	99.400000	61.900000	54.000000	39.200000	Acetyl (+42), Dimethyl (+28)	1210.690000	2.000000	0.000270	0.220000	2.000000	11.000000	19.073600	13.723833	0.658367	37.921000	20.389250	0.544450	NaN	NaN	1.344457	23.970843	19.910775	1.144786	44.113422	27.685858	0.813887	NaN	NaN	0.644267	34.042132	23.798316	0.000000	0.000000	0.000000	0.000000	0.102044	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A	sp|P78559|MAP1A_HUMAN	MAP1A_HUMAN	Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A PE=1 SV=6	100.000000	0.015800	305468.400000	8.000000	11.000000	12.000000	Spectrum10550 scans:37891,	ALGLEESLVQEGR	A[+28]LGLEESLVQEGR	K	A	98.700000	52.700000	50.800000	24.000000	Dimethyl (+28)	1427.760000	2.000000	-0.002100	-1.400000	1620.000000	1632.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum51986 scans:23872,	ALGLNIYEQNDR	A[+28]LGLNIYEQNDR	D	L	98.500000	57.800000	50.400000	41.200000	Dimethyl (+28), Label:13C(6) (+6)	1438.750000	2.000000	-0.003300	-2.300000	222.000000	233.000000	0.590100	0.275600	0.466467	0.787000	0.484900	0.615900	NaN	NaN	NaN	0.741611	0.399845	0.811105	0.915515	0.658429	0.920697	NaN	NaN	NaN	0.828563	0.529137	0.066565	0.152565	0.124990	0.285546	0.101864	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum51989 scans:23875,	ALGLNIYEQNDR	A[+28]LGLNIYEQNDR	D	L	99.300000	62.300000	50.000000	48.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1442.740000	2.000000	0.000890	0.620000	222.000000	233.000000	0.590100	0.275600	0.466467	0.787000	0.484900	0.615900	NaN	NaN	NaN	0.741611	0.399845	0.811105	0.915515	0.658429	0.920697	NaN	NaN	NaN	0.828563	0.529137	0.066565	0.152565	0.124720	0.285238	0.101819	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	sp|P60660-2|MYL6_HUMAN	MYL6_HUMAN	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	100.000000	0.010500	16942.800000	4.000000	7.000000	8.000000	Spectrum20616 scans:17006,	ALGQNPTNAEVL	A[+28]LGQNPTNAEVL	R	K	99.600000	61.700000	49.700000	52.100000	Dimethyl (+28)	1253.660000	2.000000	-0.000082	-0.065000	38.000000	49.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4	TCPD_HUMAN	TCPD_HUMAN	T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4	100.000000	0.008640	57907.900000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.32988.32988.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32988"	ALIAGGGAPEIELALR	A[+28]LIAGGGAPEIELALR	R	L	99.700000	75.200000	56.300000	59.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1587.920000	2.000000	-0.002500	-1.600000	420.000000	435.000000	0.588767	0.235233	0.400000	NaN	82.684650	NaN	NaN	NaN	NaN	0.739935	0.341281	0.695531	NaN	112.274628	NaN	NaN	NaN	NaN	0.739935	56.307954	NaN	0.478282	NaN	0.891799	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	sp|P33993|MCM7_HUMAN	MCM7_HUMAN	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	99.200000	0.010500	81291.000000	1.000000	2.000000	8.000000	Spectrum23015 scans:10754,	ALKDYALEKEK	A[+42]LKDYALEKEK	M	V	99.600000	38.300000	49.000000	29.100000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1444.890000	3.000000	-0.000370	-0.250000	2.000000	12.000000	3.082567	0.412633	0.263333	20.236450	8.399750	0.427050	NaN	162.041243	NaN	3.874031	0.598656	0.457891	23.541021	11.405730	0.638389	NaN	69.011825	NaN	13.707526	27.005403	0.264705	0.159816	0.493037	0.297831	0.101640	0.071048	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	sp|P33993|MCM7_HUMAN	MCM7_HUMAN	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	99.200000	0.010500	81291.000000	1.000000	2.000000	8.000000	Spectrum29372 scans:13495,	ALKDYALEKEK	A[+42]LKDYALEKEK	M	V	99.700000	45.500000	50.600000	25.100000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1456.860000	3.000000	-0.001200	-0.850000	2.000000	12.000000	3.082567	0.412633	0.263333	20.236450	8.399750	0.427050	NaN	162.041243	NaN	3.874031	0.598656	0.457891	23.541021	11.405730	0.638389	NaN	69.011825	NaN	13.707526	27.005403	0.264705	0.159816	0.492772	0.297671	0.101596	0.070730	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=3	sp|P28062|PSB8_HUMAN	PSB8_HUMAN	Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=3	95.200000	0.002500	30336.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.28357.28357.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28357"	ALLDVCGAPR	A[+42]LLDVC[+57]GAPR	M	G	98.800000	48.600000	51.300000	25.000000	Acetyl (+42), Carbamidomethyl (+57)	1112.560000	2.000000	-0.001900	-1.700000	2.000000	11.000000	0.688500	0.353033	0.608233	0.622850	0.315800	0.509550	NaN	NaN	NaN	0.865276	0.512187	1.057613	0.724560	0.428814	0.761716	NaN	NaN	NaN	0.794918	0.470500	0.056201	0.056258	0.104510	0.104729	0.101373	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum73755 scans:52417,	ALLELQLEPEELYQTF	NaN	R	Q	98.900000	36.700000	52.900000	14.600000	Dimethyl (+28)	1963.020000	3.000000	-0.001600	-0.810000	163.000000	178.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum72279 scans:48387,	ALLELQLEPEELYQTFQR	A[+28]LLELQLEPEELYQTFQR	R	I	98.900000	39.300000	54.500000	24.900000	Dimethyl (+28), Label:13C(6) (+6)	2253.200000	3.000000	-0.002300	-1.000000	163.000000	180.000000	0.664000	0.284600	0.428700	NaN	1.740850	NaN	NaN	NaN	NaN	0.834485	0.412903	0.745436	NaN	2.363840	NaN	NaN	NaN	NaN	0.834485	1.388371	NaN	0.389909	NaN	0.724684	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum72258 scans:48346,	ALLELQLEPEELYQTFQR	A[+28]LLELQLEPEELYQTFQR	R	I	99.500000	44.100000	54.300000	35.500000	Dimethyl (+28)	2247.180000	3.000000	-0.002500	-1.100000	163.000000	180.000000	0.664000	0.284600	0.428700	NaN	1.740850	NaN	NaN	NaN	NaN	0.834485	0.412903	0.745436	NaN	2.363840	NaN	NaN	NaN	NaN	0.834485	1.388371	NaN	0.389909	NaN	0.724296	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	TBCB_HUMAN	TBCB_HUMAN	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	100.000000	0.004670	27307.500000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.38353.38353.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38353"	ALLGSYPVDDGCR	A[+28]LLGSYPVDDGC[+57]R	D	I	98.600000	50.100000	51.200000	50.100000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1459.700000	2.000000	-0.003800	-2.600000	72.000000	84.000000	0.689367	1.459733	2.078200	0.771700	0.340750	0.452600	NaN	NaN	NaN	0.866365	2.117806	3.613632	0.897717	0.462693	0.676583	NaN	NaN	NaN	0.882041	1.290250	0.011313	0.363065	0.020993	0.674069	0.101196	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	TBCB_HUMAN	TBCB_HUMAN	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	100.000000	0.004670	27307.500000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.38660.38660.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38660"	ALLGSYPVDDGCR	A[+28]LLGSYPVDDGC[+57]R	D	I	99.200000	52.800000	50.900000	52.000000	Dimethyl (+28), Carbamidomethyl (+57)	1449.690000	2.000000	-0.003200	-2.200000	72.000000	84.000000	0.689367	1.459733	2.078200	0.771700	0.340750	0.452600	NaN	NaN	NaN	0.866365	2.117806	3.613632	0.897717	0.462693	0.676583	NaN	NaN	NaN	0.882041	1.290250	0.011313	0.363065	0.020981	0.673708	0.101151	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.032900	28786.800000	10.000000	21.000000	25.000000	Spectrum69119 scans:43957,	ALPFWNEEIVPQIK	A[+28]LPFWNEEIVPQIK	R	E	99.600000	41.500000	52.500000	31.800000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1742.990000	3.000000	0.000085	0.048000	163.000000	176.000000	6.185200	5.999900	1.067500	102.757250	91.321600	1.191200	NaN	NaN	NaN	7.773281	8.704759	1.856199	119.537298	124.002444	1.780701	NaN	NaN	NaN	63.655290	66.353601	0.079345	0.044014	0.146685	0.081628	0.101107	0.980226	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.032900	28786.800000	10.000000	21.000000	25.000000	Spectrum60763 scans:34230,	ALPFWNEEIVPQIKEGKR	A[+28]LPFWNEEIVPQIKEGKR	R	V	99.100000	33.600000	54.100000	19.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2263.300000	4.000000	0.002900	1.300000	163.000000	180.000000	11.511567	6.844667	0.624400	23.017000	0.335900	0.204800	NaN	NaN	NaN	14.467220	9.930361	1.085724	26.775629	0.456107	0.306151	NaN	NaN	NaN	20.621424	5.193234	0.000000	0.470780	0.000000	0.867556	0.101063	0.976090	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.032900	28786.800000	10.000000	21.000000	25.000000	Spectrum60765 scans:34234,	ALPFWNEEIVPQIKEGKR	A[+28]LPFWNEEIVPQIKEGKR	R	V	99.300000	31.200000	53.000000	21.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2251.330000	4.000000	0.001500	0.660000	163.000000	180.000000	11.511567	6.844667	0.624400	23.017000	0.335900	0.204800	NaN	NaN	NaN	14.467220	9.930361	1.085724	26.775629	0.456107	0.306151	NaN	NaN	NaN	20.621424	5.193234	0.000000	0.470780	0.000000	0.867095	0.101019	0.971989	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens GN=EIF4G1 PE=1 SV=4	sp|Q04637-9|IF4G1_HUMAN	IF4G1_HUMAN	Isoform 9 of Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens GN=EIF4G1	100.000000	0.003950	0.000000	2.000000	2.000000	3.000000	Spectrum18456 scans:10493,	ALPSEELNR	A[+28]LPSEELNR	R	Q	99.100000	53.400000	48.500000	15.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1065.570000	2.000000	-0.000990	-0.930000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.021100	69396.600000	5.000000	15.000000	16.000000	Spectrum41953 scans:12304,	ALQLEEER	NaN	R	K	98.900000	51.000000	48.000000	2.150000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1024.540000	2.000000	-0.000370	-0.360000	372.000000	379.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of tRNA (guanine(10)-N2)-methyltransferase homolog OS=Homo sapiens GN=TRMT11	sp|Q7Z4G4-2|TRM11_HUMAN	TRM11_HUMAN	Isoform 2 of tRNA (guanine(10)-N2)-methyltransferase homolog OS=Homo sapiens GN=TRMT11	96.000000	0.004480	52773.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.14730.14730.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14730"	ALSCTLNR	A[+42]LSC[+57]TLNR	M	Y	99.000000	55.200000	49.300000	28.500000	Acetyl (+42), Carbamidomethyl (+57)	975.480000	2.000000	-0.002100	-2.100000	2.000000	9.000000	42.639667	1.410167	0.096500	0.789050	0.476400	0.603150	NaN	NaN	NaN	53.587617	2.045894	0.167797	0.917900	0.646887	0.901637	NaN	NaN	NaN	27.252759	1.346391	0.441728	0.305041	0.813154	0.558571	0.100799	0.955923	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1	sp|P36543|VATE1_HUMAN	VATE1_HUMAN	V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1	100.000000	0.007900	26128.200000	3.000000	4.000000	6.000000	Spectrum22931 scans:8682,	ALSDADVQKQ	A[+42]LSDADVQKQ	M	I	99.300000	55.400000	49.000000	43.300000	Acetyl (+42), Dimethyl:2H(4) (+32)	1147.600000	2.000000	-0.000660	-0.570000	2.000000	11.000000	0.795700	1.093467	2.417767	1.458300	0.739650	5.639550	NaN	NaN	3.868943	1.000000	1.586420	4.204080	1.696437	1.004345	8.430451	NaN	NaN	1.854008	1.348219	1.295383	0.160910	0.140695	0.295740	0.257496	0.100711	0.944218	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1	sp|P36543|VATE1_HUMAN	VATE1_HUMAN	V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1	100.000000	0.007900	26128.200000	3.000000	4.000000	6.000000	Spectrum28547 scans:10980,	ALSDADVQKQ	A[+42]LSDADVQKQ	M	I	99.300000	55.400000	48.400000	38.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1151.590000	2.000000	-0.000250	-0.210000	2.000000	11.000000	0.795700	1.093467	2.417767	1.458300	0.739650	5.639550	NaN	NaN	3.868943	1.000000	1.586420	4.204080	1.696437	1.004345	8.430451	NaN	NaN	1.854008	1.348219	1.295383	0.160910	0.140695	0.295584	0.257089	0.100623	0.940379	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1	sp|P36543|VATE1_HUMAN	VATE1_HUMAN	V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1	100.000000	0.043100	26128.200000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction5A.10996.10996.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10996"	ALSDADVQKQ	A[+42]LSDADVQKQ	M	I	98.800000	51.500000	51.600000	42.400000	Acetyl (+42), Dimethyl (+28)	1143.580000	2.000000	-0.000400	-0.350000	2.000000	11.000000	0.795700	1.093467	2.417767	1.458300	0.739650	5.639550	NaN	NaN	3.868943	1.000000	1.586420	4.204080	1.696437	1.004345	8.430451	NaN	NaN	1.854008	1.348219	1.295383	0.160910	0.140695	0.295115	0.256954	0.100580	0.936572	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction4A (Nsco_Tails_biological_replicate_3_fraction4A_127088)	V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1	sp|P36543|VATE1_HUMAN	VATE1_HUMAN	V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1	100.000000	0.301000	26128.200000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction4A.11097.11097.2 File:"Nsco_Tails_biological_replicate_3_fraction4A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11097"	ALSDADVQKQIK	A[+42]LSDADVQKQIK	M	H	99.500000	71.000000	55.400000	45.800000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	1412.780000	2.000000	-0.003200	-2.300000	2.000000	13.000000	24.534667	21.241567	0.699933	12.525500	13.869000	1.043150	NaN	NaN	3.781143	30.834066	30.817632	1.217064	14.570888	18.832236	1.559384	NaN	NaN	1.811934	22.702477	24.824934	0.000000	0.000000	0.000000	0.000000	0.100536	0.932796	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction4A (Nsco_Tails_biological_replicate_3_fraction4A_127088)	V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1	sp|P36543|VATE1_HUMAN	VATE1_HUMAN	V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1	100.000000	0.301000	26128.200000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction4A.11087.11087.2 File:"Nsco_Tails_biological_replicate_3_fraction4A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11087"	ALSDADVQKQIK	A[+42]LSDADVQKQIK	M	H	99.700000	72.900000	55.500000	62.800000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1428.820000	2.000000	-0.001100	-0.780000	2.000000	13.000000	24.534667	21.241567	0.699933	12.525500	13.869000	1.043150	NaN	NaN	3.781143	30.834066	30.817632	1.217064	14.570888	18.832236	1.559384	NaN	NaN	1.811934	22.702477	24.824934	0.000000	0.000000	0.000000	0.000000	0.100492	0.929050	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1	sp|P36543|VATE1_HUMAN	VATE1_HUMAN	V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1	100.000000	0.043100	26128.200000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction5A.13771.13771.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13771"	ALSDADVQKQIK	A[+42]LSDADVQKQIK	M	H	98.500000	56.700000	55.100000	49.500000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1420.840000	2.000000	0.002700	1.900000	2.000000	13.000000	24.534667	21.241567	0.699933	12.525500	13.869000	1.043150	NaN	NaN	3.781143	30.834066	30.817632	1.217064	14.570888	18.832236	1.559384	NaN	NaN	1.811934	22.702477	24.824934	0.000000	0.000000	0.000000	0.000000	0.100449	0.914361	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Calcium/calmodulin-dependent protein kinase type IV OS=Homo sapiens GN=CAMK4 PE=1 SV=1	KCC4_HUMAN	KCC4_HUMAN	Calcium/calmodulin-dependent protein kinase type IV OS=Homo sapiens GN=CAMK4 PE=1 SV=1	100.000000	0.011500	51908.200000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.39709.39709.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39709"	ALSDFFEVESELGR	A[+28]LSDFFEVESELGR	D	G	99.700000	86.300000	53.100000	78.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1635.800000	2.000000	-0.004000	-2.500000	41.000000	54.000000	0.907600	0.373400	0.411400	0.512950	0.316350	0.614200	NaN	NaN	NaN	1.140631	0.541735	0.715354	0.596714	0.429561	0.918155	NaN	NaN	NaN	0.868672	0.485648	0.193155	0.073199	0.352206	0.132845	0.100405	0.910761	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Calcium/calmodulin-dependent protein kinase type IV OS=Homo sapiens GN=CAMK4 PE=1 SV=1	KCC4_HUMAN	KCC4_HUMAN	Calcium/calmodulin-dependent protein kinase type IV OS=Homo sapiens GN=CAMK4 PE=1 SV=1	98.900000	0.008960	51908.200000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.34205.34205.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34205"	ALSDFFEVESELGR	A[+28]LSDFFEVESELGR	D	G	99.700000	99.600000	53.000000	88.000000	Dimethyl (+28)	1625.790000	2.000000	0.000150	0.094000	41.000000	54.000000	0.907600	0.373400	0.411400	0.512950	0.316350	0.614200	NaN	NaN	NaN	1.140631	0.541735	0.715354	0.596714	0.429561	0.918155	NaN	NaN	NaN	0.868672	0.485648	0.193155	0.073199	0.352021	0.132706	0.100362	0.889744	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Protein THEMIS OS=Homo sapiens GN=THEMIS PE=1 SV=3	sp|Q8N1K5|THMS1_HUMAN	THMS1_HUMAN	Protein THEMIS OS=Homo sapiens GN=THEMIS PE=1 SV=3	98.900000	0.007510	73436.400000	1.000000	1.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.42041.42041.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42041"	ALSLEEFVH	A[+42]LSLEEFVH	M	S	99.700000	59.500000	50.600000	47.600000	Acetyl (+42)	1085.540000	2.000000	0.000600	0.560000	2.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3	UBP14_HUMAN	UBP14_HUMAN	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3	100.000000	0.006590	56052.300000	4.000000	5.000000	5.000000	Spectrum37613 scans:7246,	ALTGVQPAR	A[+28]LTGVQPAR	F	Q	99.200000	57.800000	47.900000	27.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	949.560000	2.000000	0.000390	0.410000	35.000000	43.000000	0.572733	0.569733	4.208267	0.014400	0.049000	5.510200	NaN	NaN	NaN	0.719786	0.826579	7.317452	0.016751	0.066535	8.237088	NaN	NaN	NaN	0.368269	0.446557	0.485187	0.448866	0.883315	0.811654	0.100275	0.882952	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4	SYVC_HUMAN	SYVC_HUMAN	Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4	100.000000	0.001320	140459.500000	1.000000	1.000000	1.000000	Spectrum20558 scans:16707,	ALTNAIQDSLTR	A[+28]LTNAIQDSLTR	H	W	99.700000	81.000000	50.500000	46.800000	Dimethyl (+28)	1329.720000	2.000000	-0.001200	-0.870000	355.000000	366.000000	2.679067	0.481933	NaN	2.793450	NaN	NaN	NaN	NaN	NaN	3.366931	0.699197	NaN	3.249615	NaN	NaN	NaN	NaN	NaN	3.308273	0.699197	0.011287	NaN	0.020537	NaN	0.100231	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=4 SV=2	A8MUM1_HUMAN	A8MUM1_HUMAN	Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=4 SV=2	100.000000	0.006590	46301.700000	2.000000	5.000000	5.000000	Spectrum45410 scans:16269,	ALTPQTAETDAIR	A[+28]LTPQTAETDAIR	R	F	99.500000	69.900000	50.900000	52.100000	Dimethyl (+28), Label:13C(6) (+6)	1419.770000	2.000000	0.001200	0.870000	17.000000	29.000000	0.838100	0.366867	0.837367	NaN	NaN	NaN	NaN	NaN	NaN	1.053286	0.532257	1.456037	NaN	NaN	NaN	NaN	NaN	NaN	1.053286	0.532257	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=4 SV=2	A8MUM1_HUMAN	A8MUM1_HUMAN	Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=4 SV=2	100.000000	0.006590	46301.700000	2.000000	5.000000	5.000000	Spectrum45438 scans:16299,	ALTPQTAETDAIR	A[+28]LTPQTAETDAIR	R	F	99.700000	72.800000	50.600000	49.200000	Dimethyl (+28)	1413.740000	2.000000	-0.001700	-1.200000	17.000000	29.000000	0.838100	0.366867	0.837367	NaN	NaN	NaN	NaN	NaN	NaN	1.053286	0.532257	1.456037	NaN	NaN	NaN	NaN	NaN	NaN	1.053286	0.532257	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=4 SV=2	A8MUM1_HUMAN	A8MUM1_HUMAN	Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=4 SV=2	100.000000	0.006590	46301.700000	2.000000	5.000000	5.000000	Spectrum45442 scans:16304,	ALTPQTAETDAIR	A[+28]LTPQTAETDAIR	R	F	99.700000	73.900000	50.800000	55.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1423.750000	2.000000	-0.000590	-0.410000	17.000000	29.000000	0.838100	0.366867	0.837367	NaN	NaN	NaN	NaN	NaN	NaN	1.053286	0.532257	1.456037	NaN	NaN	NaN	NaN	NaN	NaN	1.053286	0.532257	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum42981 scans:13469,	ALTSELANAR	A[+28]LTSELANAR	K	D	99.700000	66.200000	48.800000	32.500000	Dimethyl (+28), Label:13C(6) (+6)	1078.610000	2.000000	-0.000290	-0.270000	524.000000	533.000000	1.409700	0.150100	0.312000	1.401950	NaN	NaN	NaN	NaN	NaN	1.771648	0.217768	0.542514	1.630886	NaN	NaN	NaN	NaN	NaN	1.701267	0.217768	0.026322	NaN	0.047695	NaN	0.099928	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4	RL14_HUMAN	RL14_HUMAN	60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4	100.000000	0.003950	23414.300000	2.000000	3.000000	3.000000	Spectrum5408 scans:23567,	ALVDGPCTQVR	A[+28]LVDGPC[+57]TQVR	R	R	99.400000	60.200000	49.000000	37.900000	Dimethyl (+28), Carbamidomethyl (+57)	1242.640000	2.000000	-0.002000	-1.600000	36.000000	46.000000	0.378100	0.097767	0.311267	2.449100	0.176200	0.209200	2.181671	NaN	NaN	0.475179	0.141842	0.541239	2.849033	0.239256	0.312729	1.459166	NaN	NaN	1.594459	0.190549	0.146585	0.159318	0.265475	0.286146	0.006810	0.844282	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4	SERA_HUMAN	SERA_HUMAN	D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4	100.000000	0.010500	56632.600000	3.000000	5.000000	8.000000	Spectrum42893 scans:13366,	ALVDHENVISCPH	A[+28]LVDHENVISC[+57]PH	R	L	98.900000	30.700000	48.100000	23.300000	Dimethyl (+28), Carbamidomethyl (+57)	1517.730000	3.000000	0.000340	0.220000	271.000000	283.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.037300	19463.200000	7.000000	13.000000	16.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.55765.55765.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=55765"	ALVDMVNDGVEDLR	A[+28]LVDMVNDGVEDLR	A	C	99.600000	68.300000	53.800000	61.300000	Dimethyl (+28)	1572.790000	2.000000	0.003500	2.200000	88.000000	101.000000	1.109733	0.905300	0.779867	0.166550	0.302250	1.902100	NaN	NaN	NaN	1.394663	1.313425	1.356054	0.193747	0.410415	2.843411	NaN	NaN	NaN	0.794205	0.861920	0.412123	0.307191	0.744051	0.550595	0.099713	0.838164	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=2	MYG1_HUMAN	MYG1_HUMAN	UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=2	100.000000	0.010500	42431.800000	3.000000	7.000000	8.000000	Spectrum47997 scans:19254,	ALVEEALAQR	A[+28]LVEEALAQR	R	F	99.700000	82.700000	49.500000	35.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1136.640000	2.000000	-0.000011	-0.009500	244.000000	253.000000	0.584867	0.276600	0.472667	3.954450	0.230300	0.051900	NaN	NaN	NaN	0.735034	0.401296	0.821886	4.600204	0.312716	0.077584	NaN	NaN	NaN	2.667619	0.357006	0.399132	0.078577	0.720222	0.140765	0.099670	0.835138	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	PYR1_HUMAN	PYR1_HUMAN	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	100.000000	0.032600	242964.500000	3.000000	5.000000	13.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.36856.36856.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36856"	ALVLEDGSVLR	A[+42]LVLEDGSVLR	A	G	99.600000	58.800000	54.000000	41.300000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1222.680000	2.000000	0.000320	0.260000	3.000000	13.000000	0.348400	0.237233	1.987833	0.636650	0.077500	0.124000	NaN	NaN	NaN	0.437853	0.344182	3.456500	0.740614	0.105235	0.185365	NaN	NaN	NaN	0.589234	0.224708	0.160092	0.311098	0.288731	0.555876	0.099584	0.832134	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Methyltransferase-like protein 21A OS=Homo sapiens GN=METTL21A PE=4 SV=1	sp|Q8WXB1|MT21A_HUMAN	MT21A_HUMAN	Methyltransferase-like protein 21A OS=Homo sapiens GN=METTL21A PE=2 SV=2	96.000000	0.002500	24582.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.45999.45999.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=45999"	ALVPYEETTEFGLQKF	A[+42]LVPYEETTEFGLQKF	M	H	99.000000	53.300000	56.000000	53.300000	Acetyl (+42), Dimethyl (+28)	1940.980000	2.000000	-0.000380	-0.200000	2.000000	17.000000	17.439400	14.153400	0.811600	47.567050	30.809000	0.625400	NaN	NaN	NaN	21.917054	20.533997	1.411233	55.334652	41.834476	0.934898	NaN	NaN	NaN	38.625853	31.184237	0.000000	0.000000	0.000000	0.000000	0.099455	0.829152	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4	sp|Q15393|SF3B3_HUMAN	SF3B3_HUMAN	Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4	100.000000	0.007510	135561.400000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.22626.22626.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22626"	ALVQVYPDGIR	A[+28]LVQVYPDGIR	D	H	99.700000	73.800000	54.400000	51.600000	Dimethyl (+28)	1257.710000	2.000000	-0.002000	-1.600000	515.000000	525.000000	0.532267	0.123700	0.229333	0.594350	0.352550	0.596350	NaN	NaN	NaN	0.668929	0.179466	0.398771	0.691406	0.478715	0.891472	NaN	NaN	NaN	0.680167	0.329091	0.010518	0.271660	0.018901	0.484908	0.098608	0.826190	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4	sp|Q15393|SF3B3_HUMAN	SF3B3_HUMAN	Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4	100.000000	0.008960	135561.400000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.19776.19776.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19776"	ALVQVYPDGIR	A[+28]LVQVYPDGIR	D	H	98.900000	54.900000	54.500000	32.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1267.720000	2.000000	-0.000270	-0.210000	515.000000	525.000000	0.532267	0.123700	0.229333	0.594350	0.352550	0.596350	NaN	NaN	NaN	0.668929	0.179466	0.398771	0.691406	0.478715	0.891472	NaN	NaN	NaN	0.680167	0.329091	0.010518	0.271660	0.018891	0.484659	0.098440	0.823250	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	SRSF2_HUMAN	SRSF2_HUMAN	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	100.000000	0.012500	25459.100000	3.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.9141.9141.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9141"	AMDAMDGAVLDGR	A[+28]MDAMDGAVLDGR	D	E	99.500000	48.900000	45.100000	40.700000	Dimethyl (+28), Oxidation (+16), Oxidation (+16)	1380.600000	2.000000	-0.003600	-2.600000	71.000000	83.000000	82.018000	NaN	0.544233	1.301450	0.415600	0.332500	NaN	NaN	NaN	103.076536	NaN	0.946328	1.513974	0.564329	0.497048	NaN	NaN	NaN	52.295255	0.564329	0.404344	NaN	0.725853	NaN	0.098398	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	SRSF2_HUMAN	SRSF2_HUMAN	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	100.000000	0.026900	25459.100000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.12452.12452.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12452"	AMDAMDGAVLDGR	A[+28]MDAMDGAVLDGR	D	E	99.700000	69.200000	46.200000	42.600000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1374.610000	2.000000	-0.009500	-6.900000	71.000000	83.000000	82.018000	NaN	0.544233	1.301450	0.415600	0.332500	NaN	NaN	NaN	103.076536	NaN	0.946328	1.513974	0.564329	0.497048	NaN	NaN	NaN	52.295255	0.564329	0.404344	NaN	0.724354	NaN	0.098356	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	SRSF2_HUMAN	SRSF2_HUMAN	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	100.000000	0.026900	25459.100000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.18150.18150.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18150"	AMDAMDGAVLDGR	A[+28]MDAMDGAVLDGR	D	E	99.700000	75.400000	48.100000	67.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1358.620000	2.000000	-0.001400	-1.000000	71.000000	83.000000	82.018000	NaN	0.544233	1.301450	0.415600	0.332500	NaN	NaN	NaN	103.076536	NaN	0.946328	1.513974	0.564329	0.497048	NaN	NaN	NaN	52.295255	0.564329	0.404344	NaN	0.723980	NaN	0.097815	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	SRSF2_HUMAN	SRSF2_HUMAN	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	100.000000	0.026900	25459.100000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.18151.18151.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18151"	AMDAMDGAVLDGR	A[+28]MDAMDGAVLDGR	D	E	99.700000	87.900000	47.900000	80.800000	Dimethyl (+28)	1348.610000	2.000000	-0.000890	-0.660000	71.000000	83.000000	82.018000	NaN	0.544233	1.301450	0.415600	0.332500	NaN	NaN	NaN	103.076536	NaN	0.946328	1.513974	0.564329	0.497048	NaN	NaN	NaN	52.295255	0.564329	0.404344	NaN	0.723607	NaN	0.097650	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	SRSF2_HUMAN	SRSF2_HUMAN	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	100.000000	0.026900	25459.100000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.7039.7039.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7039"	AMDGAVLDGR	A[+28]MDGAVLDGR	D	E	99.700000	60.000000	49.300000	37.200000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1057.510000	2.000000	-0.000700	-0.660000	74.000000	83.000000	0.415700	0.203333	0.479533	0.883900	0.348550	0.394250	1.860871	5.220629	4.984871	0.522433	0.295000	0.833826	1.028239	0.473284	0.589356	1.244605	2.223416	2.388763	0.931759	0.997233	0.048904	0.246493	0.087473	0.437285	0.006655	0.054389	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=2	MYG1_HUMAN	MYG1_HUMAN	UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=2	100.000000	0.005760	42431.800000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.30132.30132.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30132"	AMDLVQEEFLQR	A[+28]MDLVQEEFLQR	R	L	99.700000	71.700000	53.400000	45.000000	Dimethyl (+28)	1505.750000	2.000000	-0.001500	-0.960000	220.000000	231.000000	0.692367	2.030933	2.662367	0.099950	2.755300	106.165250	NaN	NaN	NaN	0.870135	2.946513	4.629398	0.116272	3.741327	158.704313	NaN	NaN	NaN	0.493203	3.343920	0.415433	0.075306	0.742685	0.133526	0.097568	0.794960	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=2	MYG1_HUMAN	MYG1_HUMAN	UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=2	100.000000	0.010500	42431.800000	3.000000	7.000000	8.000000	Spectrum54851 scans:27054,	AMDLVQEEFLQR	A[+28]MDLVQEEFLQR	R	L	98.600000	50.600000	48.900000	37.200000	Dimethyl (+28), Oxidation (+16)	1521.750000	2.000000	-0.002000	-1.300000	220.000000	231.000000	0.692367	2.030933	2.662367	0.099950	2.755300	106.165250	NaN	NaN	NaN	0.870135	2.946513	4.629398	0.116272	3.741327	158.704313	NaN	NaN	NaN	0.493203	3.343920	0.415433	0.075306	0.742303	0.133458	0.097527	0.792237	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=2	MYG1_HUMAN	MYG1_HUMAN	UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=2	100.000000	0.010500	42431.800000	3.000000	7.000000	8.000000	Spectrum59180 scans:32255,	AMDLVQEEFLQR	A[+28]MDLVQEEFLQR	R	L	99.600000	64.100000	49.900000	47.300000	Dimethyl (+28), Oxidation (+16), Label:13C(6) (+6)	1527.770000	2.000000	-0.001200	-0.810000	220.000000	231.000000	0.692367	2.030933	2.662367	0.099950	2.755300	106.165250	NaN	NaN	NaN	0.870135	2.946513	4.629398	0.116272	3.741327	158.704313	NaN	NaN	NaN	0.493203	3.343920	0.415433	0.075306	0.741921	0.133390	0.097486	0.781532	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=2	MYG1_HUMAN	MYG1_HUMAN	UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=2	100.000000	0.010500	42431.800000	3.000000	7.000000	8.000000	Spectrum59186 scans:32263,	AMDLVQEEFLQR	A[+28]MDLVQEEFLQR	R	L	99.700000	72.200000	49.800000	50.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1515.760000	2.000000	-0.002800	-1.800000	220.000000	231.000000	0.692367	2.030933	2.662367	0.099950	2.755300	106.165250	NaN	NaN	NaN	0.870135	2.946513	4.629398	0.116272	3.741327	158.704313	NaN	NaN	NaN	0.493203	3.343920	0.415433	0.075306	0.741539	0.133254	0.097445	0.778900	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum33116 scans:2147,	AMLENEKKKR	NaN	R	E	99.600000	29.300000	48.900000	15.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1391.860000	4.000000	-0.000400	-0.280000	321.000000	330.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform SMN-delta5 of Survival motor neuron protein OS=Homo sapiens GN=SMN1	sp|Q16637|SMN_HUMAN	SMN_HUMAN	Survival motor neuron protein OS=Homo sapiens GN=SMN1 PE=1 SV=1	100.000000	0.002630	31831.500000	1.000000	2.000000	2.000000	Spectrum11356 scans:40377,	AMSSGGSGGGVPEQEDSVLFR	A[+42]M[+16]SSGGSGGGVPEQEDSVLFR	M	R	99.700000	61.700000	44.500000	57.900000	Acetyl (+42), Oxidation (+16)	2123.940000	3.000000	-0.004500	-2.100000	2.000000	22.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform SMN-delta5 of Survival motor neuron protein OS=Homo sapiens GN=SMN1	sp|Q16637-2|SMN_HUMAN	SMN_HUMAN	Isoform SMN-delta5 of Survival motor neuron protein OS=Homo sapiens GN=SMN1	100.000000	0.002630	28516.400000	1.000000	2.000000	2.000000	Spectrum11367 scans:40422,	AMSSGGSGGGVPEQEDSVLFR	A[+42]M[+16]SSGGSGGGVPEQEDSVLFR	M	R	99.700000	56.000000	44.700000	46.300000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10)	2133.950000	3.000000	-0.006300	-2.900000	2.000000	22.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.012500	140943.500000	3.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.14057.14057.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14057"	ANDELTPLGR	A[+28]NDELTPLGR	D	I	98.900000	55.600000	52.100000	40.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1122.590000	2.000000	-0.005600	-5.000000	844.000000	853.000000	2.021933	0.413133	0.368400	0.653300	0.530450	0.812600	NaN	NaN	NaN	2.541075	0.599381	0.640584	0.759983	0.720280	1.214740	NaN	NaN	NaN	1.650529	0.659830	0.314991	0.058161	0.560810	0.102549	0.097240	0.768549	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.017900	140943.500000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.12808.12808.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12808"	ANDELTPLGR	A[+28]NDELTPLGR	D	I	99.000000	51.100000	52.100000	31.500000	Dimethyl (+28)	1112.580000	2.000000	-0.000890	-0.800000	844.000000	853.000000	2.021933	0.413133	0.368400	0.653300	0.530450	0.812600	NaN	NaN	NaN	2.541075	0.599381	0.640584	0.759983	0.720280	1.214740	NaN	NaN	NaN	1.650529	0.659830	0.314991	0.058161	0.560522	0.102341	0.096873	0.758470	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.017900	140943.500000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.12875.12875.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12875"	ANDELTPLGR	A[+28]NDELTPLGR	D	I	99.700000	69.500000	52.800000	49.300000	Dimethyl (+28), Label:13C(6) (+6)	1118.600000	2.000000	0.000091	0.082000	844.000000	853.000000	2.021933	0.413133	0.368400	0.653300	0.530450	0.812600	NaN	NaN	NaN	2.541075	0.599381	0.640584	0.759983	0.720280	1.214740	NaN	NaN	NaN	1.650529	0.659830	0.314991	0.058161	0.558232	0.102290	0.096469	0.741453	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Mitogen-activated protein kinase kinase kinase kinase 4 OS=Homo sapiens GN=MAP4K4 PE=4 SV=1	sp|O95819|M4K4_HUMAN	M4K4_HUMAN	Mitogen-activated protein kinase kinase kinase kinase 4 OS=Homo sapiens GN=MAP4K4 PE=1 SV=2	99.900000	0.001320	142083.100000	1.000000	1.000000	1.000000	Spectrum13100 scans:48846,	ANDSPAKSLVDIDLSSLR	A[+42]NDSPAKSLVDIDLSSLR	M	D	99.700000	60.500000	53.700000	52.000000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1980.080000	3.000000	0.005800	2.900000	2.000000	19.000000	1.526600	3.437100	1.573967	104.553100	22.522600	0.237250	NaN	NaN	NaN	1.918562	4.986604	2.736857	121.626407	30.582660	0.354660	NaN	NaN	NaN	61.772485	17.784632	0.379327	0.205515	0.671906	0.361083	0.095909	0.739084	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Mitogen-activated protein kinase kinase kinase kinase 4 OS=Homo sapiens GN=MAP4K4 PE=4 SV=1	G5E948_HUMAN	G5E948_HUMAN	Mitogen-activated protein kinase kinase kinase kinase 4 OS=Homo sapiens GN=MAP4K4 PE=4 SV=1	100.000000	0.005010	151065.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.36789.36789.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36789"	ANDSPAKSLVDIDLSSLR	A[+42]NDSPAKSLVDIDLSSLR	M	D	99.700000	77.300000	57.500000	76.100000	Acetyl (+42), Dimethyl (+28)	1970.030000	2.000000	-0.002400	-1.200000	2.000000	19.000000	1.526600	3.437100	1.573967	104.553100	22.522600	0.237250	NaN	NaN	NaN	1.918562	4.986604	2.736857	121.626407	30.582660	0.354660	NaN	NaN	NaN	61.772485	17.784632	0.379327	0.205515	0.671221	0.360900	0.095870	0.729758	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Mitogen-activated protein kinase kinase kinase kinase 4 OS=Homo sapiens GN=MAP4K4 PE=4 SV=1	G5E948_HUMAN	G5E948_HUMAN	Mitogen-activated protein kinase kinase kinase kinase 4 OS=Homo sapiens GN=MAP4K4 PE=4 SV=1	100.000000	0.005010	151065.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.36835.36835.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36835"	ANDSPAKSLVDIDLSSLR	A[+42]NDSPAKSLVDIDLSSLR	M	D	99.700000	85.500000	58.000000	79.900000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1988.050000	2.000000	-0.000200	-0.100000	2.000000	19.000000	1.526600	3.437100	1.573967	104.553100	22.522600	0.237250	NaN	NaN	NaN	1.918562	4.986604	2.736857	121.626407	30.582660	0.354660	NaN	NaN	NaN	61.772485	17.784632	0.379327	0.205515	0.670196	0.360717	0.095830	0.727463	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Phosphorylated CTD-interacting factor 1 OS=Homo sapiens GN=PCIF1 PE=1 SV=1	PCIF1_HUMAN	PCIF1_HUMAN	Phosphorylated CTD-interacting factor 1 OS=Homo sapiens GN=PCIF1 PE=1 SV=1	83.500000	0.002310	80652.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.2150.2150.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2150"	ANENHGSPR	A[+42]NENHGSPR	M	E	98.700000	56.200000	44.400000	43.400000	Acetyl (+42)	1022.450000	2.000000	-0.007500	-7.300000	2.000000	10.000000	0.089333	1.459400	11.052000	NaN	NaN	NaN	NaN	NaN	NaN	0.112270	2.117323	19.217527	NaN	NaN	NaN	NaN	NaN	NaN	0.112270	2.117323	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2	SYLC_HUMAN	SYLC_HUMAN	Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2	100.000000	0.002500	134452.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40554.40554.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40554"	ANFVEAMADAGILR	A[+28]NFVEAMADAGILR	D	L	99.700000	68.500000	54.700000	57.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1514.780000	2.000000	0.003600	2.400000	753.000000	766.000000	1.778200	0.316500	0.178000	0.971950	2.693550	2.648350	NaN	NaN	NaN	2.234762	0.459184	0.309511	1.130667	3.657478	3.958966	NaN	NaN	NaN	1.682715	2.058331	0.201812	0.420491	0.356199	0.737293	0.095751	0.720665	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1	sp|Q12904-2|AIMP1_HUMAN	AIMP1_HUMAN	Isoform 2 of Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1	93.400000	0.008640	37021.500000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.7782.7782.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7782"	ANNDAVLKR	A[+42]NNDAVLKR	M	L	98.600000	52.300000	52.700000	33.100000	Acetyl (+42), Dimethyl (+28)	1069.590000	2.000000	0.000026	0.024000	26.000000	34.000000	175.354067	56.704667	0.329933	115.521500	58.591450	0.504400	115.733757	107.038586	5.029543	220.377110	82.268111	0.573697	134.385924	79.559305	0.754017	77.406118	45.586716	2.410170	144.056384	69.138044	0.000000	0.000000	0.000000	0.000000	0.006526	0.048984	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1	sp|Q12904|AIMP1_HUMAN	AIMP1_HUMAN	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2	100.000000	0.010500	34335.000000	3.000000	4.000000	8.000000	Spectrum2974 scans:17335,	ANNDAVLKR	A[+42]NNDAVLKR	M	L	99.200000	62.200000	49.000000	42.800000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1079.630000	2.000000	0.001100	1.000000	2.000000	10.000000	175.354067	56.704667	0.329933	115.521500	58.591450	0.504400	115.733757	107.038586	5.029543	220.377110	82.268111	0.573697	134.385924	79.559305	0.754017	77.406118	45.586716	2.410170	144.056384	69.138044	0.000000	0.000000	0.000000	0.000000	0.006523	0.048832	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1	sp|Q12904|AIMP1_HUMAN	AIMP1_HUMAN	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2	100.000000	0.010500	34335.000000	3.000000	4.000000	8.000000	Spectrum22784 scans:5397,	ANNDAVLKR	A[+42]NNDAVLKR	M	L	99.700000	75.000000	49.100000	47.300000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1087.610000	2.000000	-0.000300	-0.270000	2.000000	10.000000	175.354067	56.704667	0.329933	115.521500	58.591450	0.504400	115.733757	107.038586	5.029543	220.377110	82.268111	0.573697	134.385924	79.559305	0.754017	77.406118	45.586716	2.410170	144.056384	69.138044	0.000000	0.000000	0.000000	0.000000	0.006520	0.048681	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Transcription initiation factor IIA subunit 1 OS=Homo sapiens GN=GTF2A1 PE=1 SV=1	TF2AA_HUMAN	TF2AA_HUMAN	Transcription initiation factor IIA subunit 1 OS=Homo sapiens GN=GTF2A1 PE=1 SV=1	100.000000	0.002880	41493.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.15778.15778.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15778"	ANSANTNTVPKLYR	A[+42]NSANTNTVPKLYR	M	S	99.700000	86.000000	55.600000	78.700000	Acetyl (+42), Dimethyl (+28)	1617.850000	2.000000	-0.002000	-1.200000	2.000000	15.000000	14.576833	4.720033	0.502533	12.312850	2.333400	0.272400	NaN	NaN	NaN	18.319509	6.847906	0.873819	14.323513	3.168443	0.407205	NaN	NaN	NaN	16.321511	5.008175	0.000000	0.224118	0.000000	0.391191	0.095592	0.711795	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Transcription initiation factor IIA subunit 1 OS=Homo sapiens GN=GTF2A1 PE=1 SV=1	TF2AA_HUMAN	TF2AA_HUMAN	Transcription initiation factor IIA subunit 1 OS=Homo sapiens GN=GTF2A1 PE=1 SV=1	99.400000	0.010800	41493.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.13023.13023.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13023"	ANSANTNTVPKLYR	A[+42]NSANTNTVPKLYR	M	S	99.700000	86.300000	56.000000	78.200000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1635.870000	2.000000	-0.004500	-2.700000	2.000000	15.000000	14.576833	4.720033	0.502533	12.312850	2.333400	0.272400	NaN	NaN	NaN	18.319509	6.847906	0.873819	14.323513	3.168443	0.407205	NaN	NaN	NaN	16.321511	5.008175	0.000000	0.224118	0.000000	0.390995	0.095553	0.707441	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of Gamma-glutamylcyclotransferase OS=Homo sapiens GN=GGCT	sp|O75223-4|GGCT_HUMAN	GGCT_HUMAN	Isoform 4 of Gamma-glutamylcyclotransferase OS=Homo sapiens GN=GGCT	92.500000	0.002330	0.000000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.53963.53963.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=53963"	ANSGCKDVTGPDEESFLY	A[+42]NSGC[+57]KDVTGPDEESFLY	M	F	99.000000	46.900000	46.000000	46.900000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl (+28)	2057.890000	2.000000	-0.003600	-1.700000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform 2 of Gamma-glutamylcyclotransferase OS=Homo sapiens GN=GGCT	sp|O75223|GGCT_HUMAN	GGCT_HUMAN	Gamma-glutamylcyclotransferase OS=Homo sapiens GN=GGCT PE=1 SV=1	92.400000	0.002310	20990.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.44034.44034.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44034"	ANSGCKDVTGPDEESFLYF	A[+42]NSGC[+57]KDVTGPDEESFLYF	M	A	99.400000	61.700000	49.400000	60.800000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl:2H(4) (+32)	2208.990000	2.000000	0.002900	1.300000	2.000000	20.000000	NaN	NaN	6.116100	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	10.634846	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	sp|P25789|PSA4_HUMAN	PSA4_HUMAN	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	100.000000	0.012500	29466.800000	3.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.16437.16437.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16437"	ANVLTNELR	A[+28]NVLTNELR	D	L	99.200000	52.800000	52.900000	37.100000	Dimethyl (+28)	1056.590000	2.000000	0.000430	0.410000	83.000000	91.000000	0.567033	0.269867	0.476967	0.738200	0.458100	0.620050	129.508414	15.238657	4.609043	0.712622	0.391527	0.829363	0.858747	0.622038	0.926900	86.619011	6.489999	2.208665	29.396793	2.501188	0.336048	0.336723	0.588338	0.586561	0.006507	0.047796	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	sp|P25789|PSA4_HUMAN	PSA4_HUMAN	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	100.000000	0.013400	29466.800000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.14729.14729.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14729"	ANVLTNELR	A[+28]NVLTNELR	D	L	99.500000	56.900000	52.800000	34.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1066.600000	2.000000	-0.001200	-1.100000	83.000000	91.000000	0.567033	0.269867	0.476967	0.738200	0.458100	0.620050	129.508414	15.238657	4.609043	0.712622	0.391527	0.829363	0.858747	0.622038	0.926900	86.619011	6.489999	2.208665	29.396793	2.501188	0.336048	0.336723	0.586563	0.586266	0.006502	0.047224	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	PYR1_HUMAN	PYR1_HUMAN	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	100.000000	0.032600	242964.500000	3.000000	5.000000	13.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.27720.27720.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27720"	APALALAQKLAEAGAR	A[+28]PALALAQKLAEAGAR	D	C	99.200000	70.200000	55.700000	61.400000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1623.980000	3.000000	0.000940	0.580000	1513.000000	1528.000000	12.299333	2.952700	0.139767	7.292500	0.756300	0.107000	NaN	NaN	NaN	15.457249	4.283828	0.243030	8.483350	1.026954	0.159952	NaN	NaN	NaN	11.970300	2.655391	0.052121	0.350211	0.090930	0.609445	0.095317	0.690547	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	PDIA1_HUMAN	PDIA1_HUMAN	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	100.000000	0.007080	57100.100000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.32315.32315.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32315"	APEEEDHVLVLR	A[+28]PEEEDHVLVLR	D	K	99.500000	67.100000	54.500000	53.700000	Dimethyl (+28)	1433.750000	3.000000	0.000590	0.410000	19.000000	30.000000	0.562233	0.352067	0.723100	0.884900	0.830650	0.938800	8.512614	0.898200	2.953143	0.706590	0.510784	1.257347	1.029402	1.127911	1.403393	5.693485	0.382535	1.415154	2.476492	0.673743	0.264098	0.099516	0.460513	0.173093	0.006494	0.046943	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	PDIA1_HUMAN	PDIA1_HUMAN	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	100.000000	0.017500	57100.100000	2.000000	7.000000	7.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.15354.15354.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15354"	APEEEDHVLVLR	A[+28]PEEEDHVLVLR	D	K	99.700000	85.800000	55.000000	78.800000	Dimethyl (+28), Label:13C(6) (+6)	1439.770000	3.000000	0.000052	0.036000	19.000000	30.000000	0.562233	0.352067	0.723100	0.884900	0.830650	0.938800	8.512614	0.898200	2.953143	0.706590	0.510784	1.257347	1.029402	1.127911	1.403393	5.693485	0.382535	1.415154	2.476492	0.673743	0.264098	0.099516	0.460282	0.173007	0.006491	0.046803	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	PDIA1_HUMAN	PDIA1_HUMAN	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	100.000000	0.017500	57100.100000	2.000000	7.000000	7.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.15321.15321.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15321"	APEEEDHVLVLR	A[+28]PEEEDHVLVLR	D	K	99.700000	110.000000	54.500000	96.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1443.760000	3.000000	-0.003800	-2.600000	19.000000	30.000000	0.562233	0.352067	0.723100	0.884900	0.830650	0.938800	8.512614	0.898200	2.953143	0.706590	0.510784	1.257347	1.029402	1.127911	1.403393	5.693485	0.382535	1.415154	2.476492	0.673743	0.264098	0.099516	0.460051	0.172920	0.006488	0.046665	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of Serine/threonine-protein phosphatase 6 catalytic subunit OS=Homo sapiens GN=PPP6C	sp|O00743-3|PPP6_HUMAN	PPP6_HUMAN	Isoform 3 of Serine/threonine-protein phosphatase 6 catalytic subunit OS=Homo sapiens GN=PPP6C	100.000000	0.009220	38929.400000	1.000000	2.000000	7.000000	Spectrum58394 scans:31301,	APLDLDKYVEIAR	A[+28]PLDLDKYVEIAR	M	L	99.700000	70.100000	51.800000	57.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1575.900000	3.000000	0.000230	0.140000	2.000000	14.000000	23.132533	9.102733	0.409100	290.240550	173.584200	0.598050	NaN	NaN	1.720329	29.071928	13.206403	0.711355	337.636237	235.703985	0.894013	NaN	NaN	0.824386	183.354083	124.455194	0.000000	0.000000	0.000000	0.000000	0.095121	0.682399	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform 3 of Serine/threonine-protein phosphatase 6 catalytic subunit OS=Homo sapiens GN=PPP6C	sp|O00743-3|PPP6_HUMAN	PPP6_HUMAN	Isoform 3 of Serine/threonine-protein phosphatase 6 catalytic subunit OS=Homo sapiens GN=PPP6C	84.700000	0.002310	38929.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.31404.31404.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31404"	APLDLDKYVEIAR	A[+28]PLDLDKYVEIAR	M	L	98.800000	70.100000	56.000000	56.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1567.920000	3.000000	0.000810	0.520000	2.000000	14.000000	23.132533	9.102733	0.409100	290.240550	173.584200	0.598050	NaN	NaN	1.720329	29.071928	13.206403	0.711355	337.636237	235.703985	0.894013	NaN	NaN	0.824386	183.354083	124.455194	0.000000	0.000000	0.000000	0.000000	0.095082	0.680392	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3	sp|O14579|COPE_HUMAN	COPE_HUMAN	Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3	99.900000	0.001320	34464.900000	1.000000	1.000000	1.000000	Spectrum66683 scans:41086,	APPAPGPASGGSGEVDELFDVKNAF	A[+28]PPAPGPASGGSGEVDELFDVKNAF	M	Y	99.700000	64.500000	53.400000	61.600000	Dimethyl (+28), Dimethyl:2H(4) (+32)	2488.240000	3.000000	-0.002000	-0.800000	2.000000	26.000000	10.277000	1.754300	0.170700	62.330500	41.980700	0.698650	NaN	NaN	NaN	12.915672	2.545169	0.296818	72.508943	57.004141	1.044398	NaN	NaN	NaN	42.712307	29.774655	0.000000	0.341338	0.000000	0.591630	0.095042	0.646182	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3	tr|M0QXB4|M0QXB4_HUMAN	M0QXB4_HUMAN	Coatomer protein complex, subunit epsilon, isoform CRA_g OS=Homo sapiens GN=COPE PE=1 SV=1	99.600000	0.002500	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38979.38979.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38979"	APPAPGPASGGSGEVDELFDVKNAF	A[+28]PPAPGPASGGSGEVDELFDVKNAF	M	Y	99.100000	70.800000	57.000000	70.800000	Dimethyl (+28), Dimethyl (+28)	2484.220000	3.000000	-0.001800	-0.720000	0.000000	0.000000	10.277000	1.754300	0.170700	62.330500	41.980700	0.698650	NaN	NaN	NaN	12.915672	2.545169	0.296818	72.508943	57.004141	1.044398	NaN	NaN	NaN	42.712307	29.774655	0.000000	0.341338	0.000000	0.591335	0.095003	0.644383	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3	AATC_HUMAN	AATC_HUMAN	Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3	100.000000	0.011900	46230.100000	4.000000	6.000000	9.000000	Spectrum72955 scans:49897,	APPSVFAEVPQAQPVLVF	A[+28]PPSVFAEVPQAQPVLVF	M	K	99.500000	43.200000	53.500000	30.000000	Dimethyl (+28)	1923.050000	3.000000	-0.002500	-1.300000	2.000000	19.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3	AATC_HUMAN	AATC_HUMAN	Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3	100.000000	0.011900	46230.100000	4.000000	6.000000	9.000000	Spectrum66146 scans:40460,	APPSVFAEVPQAQPVLVFK	A[+28]PPSVFAEVPQAQPVLVFK	M	L	98.600000	36.000000	53.700000	30.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	2087.190000	3.000000	0.002000	0.970000	2.000000	20.000000	39.714050	NaN	NaN	NaN	NaN	2.336700	NaN	NaN	NaN	49.910833	NaN	NaN	NaN	NaN	3.493086	NaN	NaN	NaN	49.910833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	TKT_HUMAN	TKT_HUMAN	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	100.000000	0.014200	67861.400000	2.000000	5.000000	6.000000	NSco_TAILS_20150124_Protein_complex_100Kda.36574.36574.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36574"	APSVDIANIR	A[+28]PSVDIANIR	D	M	99.200000	56.300000	52.900000	35.000000	Dimethyl (+28)	1082.610000	2.000000	-0.000930	-0.860000	293.000000	302.000000	0.548433	0.292933	0.533900	4.897600	1.617900	0.309950	17.883986	5.174829	NaN	0.689246	0.424993	0.928360	5.697368	2.196890	0.463338	11.961332	2.203910	NaN	6.115982	1.608598	0.179443	0.112889	0.311178	0.195082	0.006470	0.043571	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.030300	53123.900000	9.000000	17.000000	23.000000	Spectrum73606 scans:51845,	AQADIALIGLAVMGQ	A[+42]QADIALIGLAVMGQ	M	N	99.700000	75.800000	51.000000	62.700000	Acetyl (+42), Oxidation (+16)	1527.800000	2.000000	0.001000	0.650000	2.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.011700	53123.900000	4.000000	5.000000	5.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.64764.64764.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64764"	AQADIALIGLAVMGQ	A[+42]QADIALIGLAVMGQ	M	N	99.000000	64.000000	55.400000	57.900000	Acetyl (+42)	1511.810000	2.000000	0.003400	2.300000	2.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.030300	53123.900000	9.000000	17.000000	23.000000	Spectrum73108 scans:50305,	AQADIALIGLAVMGQN	A[+42]QADIALIGLAVMGQN	M	L	99.400000	60.200000	51.000000	51.200000	Acetyl (+42), Oxidation (+16)	1641.840000	2.000000	-0.001100	-0.680000	2.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.011700	53123.900000	4.000000	5.000000	5.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.64551.64551.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64551"	AQADIALIGLAVMGQN	A[+42]QADIALIGLAVMGQN	M	L	99.600000	68.200000	55.500000	45.500000	Acetyl (+42)	1625.850000	2.000000	0.001600	0.960000	2.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	BAG family molecular chaperone regulator 2 OS=Homo sapiens GN=BAG2 PE=1 SV=1	BAG2_HUMAN	BAG2_HUMAN	BAG family molecular chaperone regulator 2 OS=Homo sapiens GN=BAG2 PE=1 SV=1	100.000000	0.002630	23754.500000	2.000000	2.000000	2.000000	Spectrum15165 scans:4200,	AQAKINAK	A[+42]QAKINAK	M	A	99.000000	54.300000	47.000000	29.900000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	956.600000	2.000000	-0.000064	-0.067000	2.000000	9.000000	1.325900	NaN	NaN	0.585450	0.182250	0.304200	NaN	NaN	NaN	1.666332	NaN	NaN	0.681053	0.247471	0.454743	NaN	NaN	NaN	1.173692	0.247471	0.252994	NaN	0.437196	NaN	0.094615	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	BAG family molecular chaperone regulator 2 OS=Homo sapiens GN=BAG2 PE=1 SV=1	BAG2_HUMAN	BAG2_HUMAN	BAG family molecular chaperone regulator 2 OS=Homo sapiens GN=BAG2 PE=1 SV=1	99.600000	0.002500	23754.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.4306.4306.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4306"	AQAKINAK	A[+42]QAKINAK	M	A	99.000000	53.500000	51.800000	30.000000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	940.570000	2.000000	-0.000510	-0.540000	2.000000	9.000000	1.325900	NaN	NaN	0.585450	0.182250	0.304200	NaN	NaN	NaN	1.666332	NaN	NaN	0.681053	0.247471	0.454743	NaN	NaN	NaN	1.173692	0.247471	0.252994	NaN	0.436979	NaN	0.094576	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 4 of GRIP1-associated protein 1 OS=Homo sapiens GN=GRIPAP1	sp|Q4V328|GRAP1_HUMAN	GRAP1_HUMAN	GRIP1-associated protein 1 OS=Homo sapiens GN=GRIPAP1 PE=1 SV=1	100.000000	0.006590	95972.600000	2.000000	5.000000	5.000000	Spectrum20787 scans:18126,	AQALSEEEFQR	A[+42]QALSEEEFQR	M	M	98.800000	59.500000	46.800000	38.300000	Acetyl (+42), Label:13C(6) (+6)	1354.640000	2.000000	-0.003800	-2.800000	2.000000	12.000000	0.696933	1.104933	1.289233	0.769800	0.466400	0.620400	2.360557	NaN	10.245629	0.875874	1.603056	2.241755	0.895507	0.633308	0.927424	1.578810	NaN	4.909732	1.116730	1.118182	0.040260	0.260476	0.069504	0.448339	0.006446	0.618538	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 4 of GRIP1-associated protein 1 OS=Homo sapiens GN=GRIPAP1	sp|Q4V328|GRAP1_HUMAN	GRAP1_HUMAN	GRIP1-associated protein 1 OS=Homo sapiens GN=GRIPAP1 PE=1 SV=1	100.000000	0.006590	95972.600000	2.000000	5.000000	5.000000	Spectrum20783 scans:18092,	AQALSEEEFQR	A[+42]QALSEEEFQR	M	M	99.700000	73.200000	45.600000	35.000000	Acetyl (+42)	1348.630000	2.000000	0.000130	0.097000	2.000000	12.000000	0.696933	1.104933	1.289233	0.769800	0.466400	0.620400	2.360557	NaN	10.245629	0.875874	1.603056	2.241755	0.895507	0.633308	0.927424	1.578810	NaN	4.909732	1.116730	1.118182	0.040260	0.260476	0.069469	0.447673	0.006443	0.611993	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 4 of GRIP1-associated protein 1 OS=Homo sapiens GN=GRIPAP1	sp|Q4V328|GRAP1_HUMAN	GRAP1_HUMAN	GRIP1-associated protein 1 OS=Homo sapiens GN=GRIPAP1 PE=1 SV=1	100.000000	0.006590	95972.600000	2.000000	5.000000	5.000000	Spectrum20782 scans:18091,	AQALSEEEFQR	A[+42]QALSEEEFQR	M	M	99.700000	86.600000	45.900000	69.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1358.630000	2.000000	-0.000200	-0.150000	2.000000	12.000000	0.696933	1.104933	1.289233	0.769800	0.466400	0.620400	2.360557	NaN	10.245629	0.875874	1.603056	2.241755	0.895507	0.633308	0.927424	1.578810	NaN	4.909732	1.116730	1.118182	0.040260	0.260476	0.069435	0.447230	0.006440	0.610378	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.027700	99012.600000	5.000000	14.000000	21.000000	Spectrum587 scans:10284,	AQAVSEDAGGNEGR	A[+28]QAVSEDAGGNEGR	R	A	99.700000	71.200000	45.900000	59.700000	Dimethyl (+28), Label:13C(6) (+6)	1393.650000	2.000000	-0.002400	-1.700000	121.000000	134.000000	0.436133	0.231633	0.522467	NaN	NaN	0.848300	NaN	NaN	NaN	0.548113	0.336058	0.908480	NaN	NaN	1.268107	NaN	NaN	NaN	0.548113	0.336058	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.027700	99012.600000	5.000000	14.000000	21.000000	Spectrum14638 scans:3329,	AQAVSEDAGGNEGR	A[+28]QAVSEDAGGNEGR	R	A	99.700000	90.300000	44.700000	70.700000	Dimethyl (+28)	1387.630000	2.000000	-0.000700	-0.510000	121.000000	134.000000	0.436133	0.231633	0.522467	NaN	NaN	0.848300	NaN	NaN	NaN	0.548113	0.336058	0.908480	NaN	NaN	1.268107	NaN	NaN	NaN	0.548113	0.336058	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.027700	99012.600000	5.000000	14.000000	21.000000	Spectrum14639 scans:3330,	AQAVSEDAGGNEGR	A[+28]QAVSEDAGGNEGR	R	A	99.700000	100.000000	45.000000	81.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1397.640000	2.000000	-0.000790	-0.570000	121.000000	134.000000	0.436133	0.231633	0.522467	NaN	NaN	0.848300	NaN	NaN	NaN	0.548113	0.336058	0.908480	NaN	NaN	1.268107	NaN	NaN	NaN	0.548113	0.336058	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	CDKN2A-interacting protein OS=Homo sapiens GN=CDKN2AIP PE=1 SV=3	CARF_HUMAN	CARF_HUMAN	CDKN2A-interacting protein OS=Homo sapiens GN=CDKN2AIP PE=1 SV=3	98.800000	0.002630	61107.100000	1.000000	2.000000	2.000000	Spectrum12310 scans:44750,	AQEVSEYLSQNPR	A[+42]QEVSEYLSQNPR	M	V	99.700000	77.200000	47.300000	62.300000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1571.740000	2.000000	-0.004300	-2.700000	2.000000	14.000000	2.611167	4.011833	2.729367	0.603900	0.337900	0.559500	NaN	NaN	NaN	3.281597	5.820437	4.745899	0.702516	0.458823	0.836385	NaN	NaN	NaN	1.992056	3.139630	0.365741	0.449919	0.628588	0.769074	0.094229	0.599309	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	CDKN2A-interacting protein OS=Homo sapiens GN=CDKN2AIP PE=1 SV=3	CARF_HUMAN	CARF_HUMAN	CDKN2A-interacting protein OS=Homo sapiens GN=CDKN2AIP PE=1 SV=3	98.900000	0.005010	61107.100000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.31012.31012.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31012"	AQEVSEYLSQNPR	A[+42]QEVSEYLSQNPR	M	V	99.700000	67.100000	50.900000	54.100000	Acetyl (+42)	1561.740000	2.000000	-0.000170	-0.110000	2.000000	14.000000	2.611167	4.011833	2.729367	0.603900	0.337900	0.559500	NaN	NaN	NaN	3.281597	5.820437	4.745899	0.702516	0.458823	0.836385	NaN	NaN	NaN	1.992056	3.139630	0.365741	0.449919	0.627966	0.768695	0.094076	0.597761	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum71111 scans:46593,	AQFEGIVTDLI	A[+28]QFEGIVTDLI	R	R	99.000000	68.600000	49.700000	49.400000	Dimethyl (+28)	1232.670000	2.000000	0.002000	1.600000	349.000000	359.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.017300	73663.300000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.36366.36366.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36366"	AQFEGIVTDLIR	A[+28]QFEGIVTDLIR	R	R	99.700000	81.900000	55.100000	62.100000	Dimethyl (+28)	1388.770000	2.000000	-0.000092	-0.066000	349.000000	360.000000	1.603200	0.586067	0.493467	0.274800	0.348100	2.509200	NaN	NaN	NaN	2.014830	0.850276	0.858054	0.319674	0.472673	3.750953	NaN	NaN	NaN	1.167252	0.661474	0.399828	0.177001	0.684800	0.302112	0.093923	0.587140	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum64555 scans:38684,	AQFEGIVTDLIR	A[+28]QFEGIVTDLIR	R	R	99.700000	67.800000	51.000000	43.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1398.770000	2.000000	-0.000570	-0.410000	349.000000	360.000000	1.603200	0.586067	0.493467	0.274800	0.348100	2.509200	NaN	NaN	NaN	2.014830	0.850276	0.858054	0.319674	0.472673	3.750953	NaN	NaN	NaN	1.167252	0.661474	0.399828	0.177001	0.684462	0.301963	0.093885	0.585654	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum64563 scans:38693,	AQFEGIVTDLIR	A[+28]QFEGIVTDLIR	R	R	99.700000	69.800000	50.900000	41.300000	Dimethyl (+28), Label:13C(6) (+6)	1394.790000	2.000000	0.000009	0.006600	349.000000	360.000000	1.603200	0.586067	0.493467	0.274800	0.348100	2.509200	NaN	NaN	NaN	2.014830	0.850276	0.858054	0.319674	0.472673	3.750953	NaN	NaN	NaN	1.167252	0.661474	0.399828	0.177001	0.683451	0.301815	0.093847	0.584175	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	PLPP_HUMAN	PLPP_HUMAN	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	100.000000	0.002310	31680.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.36346.36346.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36346"	AQGVLFDCDGVLWNGER	A[+28]QGVLFDC[+57]DGVLWNGER	R	A	99.400000	63.300000	52.300000	56.200000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1972.930000	2.000000	-0.008900	-4.500000	19.000000	35.000000	NaN	NaN	NaN	0.145150	1.122200	11.384950	NaN	NaN	NaN	NaN	NaN	NaN	0.168853	1.523797	17.019134	NaN	NaN	NaN	0.168853	1.523797	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	TBCB_HUMAN	TBCB_HUMAN	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	100.000000	0.007900	27307.500000	4.000000	6.000000	6.000000	Spectrum33201 scans:2246,	AQQEAEAAQR	A[+28]QQEAEAAQR	R	L	99.400000	57.300000	46.900000	37.000000	Dimethyl (+28)	1128.550000	2.000000	0.000098	0.087000	139.000000	148.000000	0.531567	0.377167	0.764333	NaN	NaN	NaN	NaN	NaN	NaN	0.668049	0.547200	1.329044	NaN	NaN	NaN	NaN	NaN	NaN	0.668049	0.547200	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	TBCB_HUMAN	TBCB_HUMAN	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	100.000000	0.007900	27307.500000	4.000000	6.000000	6.000000	Spectrum33209 scans:2255,	AQQEAEAAQR	A[+28]QQEAEAAQR	R	L	99.600000	64.000000	47.900000	41.500000	Dimethyl (+28), Label:13C(6) (+6)	1134.570000	2.000000	-0.000011	-0.009500	139.000000	148.000000	0.531567	0.377167	0.764333	NaN	NaN	NaN	NaN	NaN	NaN	0.668049	0.547200	1.329044	NaN	NaN	NaN	NaN	NaN	NaN	0.668049	0.547200	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	TBCB_HUMAN	TBCB_HUMAN	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	100.000000	0.007900	27307.500000	4.000000	6.000000	6.000000	Spectrum33202 scans:2247,	AQQEAEAAQR	A[+28]QQEAEAAQR	R	L	99.700000	62.300000	47.000000	34.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1138.560000	2.000000	-0.001100	-0.960000	139.000000	148.000000	0.531567	0.377167	0.764333	NaN	NaN	NaN	NaN	NaN	NaN	0.668049	0.547200	1.329044	NaN	NaN	NaN	NaN	NaN	NaN	0.668049	0.547200	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Core-binding factor subunit beta OS=Homo sapiens GN=CBFB PE=1 SV=2	sp|Q13951|PEBB_HUMAN	PEBB_HUMAN	Core-binding factor subunit beta OS=Homo sapiens GN=CBFB PE=1 SV=2	97.700000	0.002330	21490.100000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.43180.43180.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43180"	AQQEDALAQQAFEEAR	A[+28]QQEDALAQQAFEEAR	R	R	99.700000	79.700000	52.300000	68.600000	Dimethyl (+28)	1831.870000	2.000000	-0.004700	-2.600000	132.000000	147.000000	17.518533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.016505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.016505	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1	UB2R2_HUMAN	UB2R2_HUMAN	Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1	99.900000	0.002310	27148.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.8306.8306.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8306"	AQQQMTSSQKAL	A[+42]QQQM[+16]TSSQKAL	M	M	99.000000	54.300000	51.800000	48.000000	Acetyl (+42), Oxidation (+16), Dimethyl (+28)	1405.690000	2.000000	-0.001800	-1.300000	2.000000	13.000000	10.140033	2.956167	0.301000	10.549500	0.951100	0.123550	NaN	NaN	NaN	12.743538	4.288858	0.523387	12.272212	1.291466	0.184692	NaN	NaN	NaN	12.507875	2.790162	0.000000	0.313798	0.000000	0.531939	0.093619	0.571193	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum34978 scans:4242,	AQSEAEKLAK	A[+28]QSEAEKLAK	R	E	99.300000	35.200000	49.100000	23.400000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1173.700000	3.000000	0.001000	0.890000	382.000000	391.000000	0.577633	3.063267	7.414300	0.214600	8.322800	308.971850	NaN	NaN	NaN	0.725944	4.444240	12.892193	0.249644	11.301242	461.875850	NaN	NaN	NaN	0.487794	7.872741	0.289139	0.233761	0.491819	0.395490	0.093581	0.569787	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum34977 scans:4241,	AQSEAEKLAK	A[+28]QSEAEKLAK	R	E	99.700000	42.000000	48.200000	32.300000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1165.720000	3.000000	-0.000770	-0.660000	382.000000	391.000000	0.577633	3.063267	7.414300	0.214600	8.322800	308.971850	NaN	NaN	NaN	0.725944	4.444240	12.892193	0.249644	11.301242	461.875850	NaN	NaN	NaN	0.487794	7.872741	0.289139	0.233761	0.491578	0.395298	0.093544	0.568387	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum36487 scans:5955,	AQSEAEKLAKER	A[+28]QSEAEKLAKER	R	Q	99.700000	70.400000	51.100000	53.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1468.840000	2.000000	-0.001300	-0.900000	382.000000	393.000000	5.050700	NaN	0.422333	12.126150	5.712950	NaN	NaN	NaN	NaN	6.347493	NaN	0.734365	14.106325	7.757417	NaN	NaN	NaN	NaN	10.226909	7.757417	0.139941	NaN	0.237804	NaN	0.093468	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum36486 scans:5954,	AQSEAEKLAKER	A[+28]QSEAEKLAKER	R	Q	99.700000	89.600000	50.000000	62.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1456.880000	2.000000	-0.001400	-0.990000	382.000000	393.000000	5.050700	NaN	0.422333	12.126150	5.712950	NaN	NaN	NaN	NaN	6.347493	NaN	0.734365	14.106325	7.757417	NaN	NaN	NaN	NaN	10.226909	7.757417	0.139941	NaN	0.237455	NaN	0.093430	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.048600	67803.800000	7.000000	14.000000	21.000000	Nsco_Tails_biological_replicate_3_fraction6A.5958.5958.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=5958"	AQSEAEKLAKER	A[+28]QSEAEKLAKER	R	Q	99.100000	60.000000	55.600000	43.500000	Dimethyl (+28), Dimethyl (+28), Dimethyl (+28)	1442.810000	2.000000	-0.004100	-2.800000	382.000000	393.000000	5.050700	NaN	0.422333	12.126150	5.712950	NaN	NaN	NaN	NaN	6.347493	NaN	0.734365	14.106325	7.757417	NaN	NaN	NaN	NaN	10.226909	7.757417	0.139941	NaN	0.237339	NaN	0.093355	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1	sp|Q12904|AIMP1_HUMAN	AIMP1_HUMAN	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2	100.000000	0.010500	34335.000000	3.000000	4.000000	8.000000	Spectrum13956 scans:2336,	AQTMSNSGIK	A[+28]QTMSNSGIK	R	-	99.100000	52.700000	48.200000	43.700000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36)	1115.570000	2.000000	-0.000590	-0.530000	303.000000	312.000000	7.736900	1.905200	0.519433	NaN	NaN	NaN	NaN	NaN	8.029271	9.723388	2.764097	0.903205	NaN	NaN	NaN	NaN	NaN	3.847648	9.723388	2.764097	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1	sp|Q12904-2|AIMP1_HUMAN	AIMP1_HUMAN	Isoform 2 of Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1	100.000000	0.002330	37021.500000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.11792.11792.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11792"	AQTMSNSGIK	A[+28]QTMSNSGIK	R	-	99.700000	85.500000	51.600000	76.300000	Dimethyl (+28), Dimethyl (+28)	1091.560000	2.000000	-0.001700	-1.500000	327.000000	336.000000	7.736900	1.905200	0.519433	NaN	NaN	NaN	NaN	NaN	8.029271	9.723388	2.764097	0.903205	NaN	NaN	NaN	NaN	NaN	3.847648	9.723388	2.764097	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform Del-701 of Signal transducer and activator of transcription 3 OS=Homo sapiens GN=STAT3	sp|P40763-2|STAT3_HUMAN	STAT3_HUMAN	Isoform Del-701 of Signal transducer and activator of transcription 3 OS=Homo sapiens GN=STAT3	99.800000	0.004480	87964.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.26367.26367.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26367"	AQWNQLQQLDTR	A[+42]QWNQLQQLDTR	M	Y	99.700000	73.500000	53.300000	63.500000	Acetyl (+42)	1541.770000	2.000000	0.006600	4.300000	2.000000	13.000000	1.486533	0.262033	0.190400	0.437050	0.394000	0.972950	NaN	NaN	NaN	1.868208	0.380162	0.331073	0.508419	0.534999	1.454444	NaN	NaN	NaN	1.188314	0.457581	0.330845	0.106699	0.559470	0.179732	0.093167	0.550794	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.007080	26545.800000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.24605.24605.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24605"	ARPAEVGGMQLR	A[+28]RPAEVGGMQLR	R	F	99.300000	63.800000	54.300000	49.100000	Dimethyl (+28)	1311.710000	3.000000	0.000410	0.310000	104.000000	115.000000	0.666000	0.895133	1.174700	41.306550	2.106100	NaN	NaN	0.206357	NaN	0.836999	1.298675	2.042601	48.051825	2.859800	NaN	NaN	0.087886	NaN	24.444412	1.415454	0.446839	0.219743	0.755251	0.369971	0.093129	0.037465	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.035600	26545.800000	9.000000	20.000000	27.000000	Spectrum41382 scans:11651,	ARPAEVGGMQLR	NaN	R	F	99.100000	34.200000	50.400000	21.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10), Oxidation (+16), Label:13C(6)15N(4) (+10)	1347.720000	3.000000	-0.000430	-0.320000	104.000000	115.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	PLPP_HUMAN	PLPP_HUMAN	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	100.000000	0.011900	31680.800000	6.000000	9.000000	9.000000	Spectrum39886 scans:9917,	ARPELALR	A[+28]RPELALR	R	F	99.000000	44.800000	46.000000	17.700000	Dimethyl (+28), Label:13C(6) (+6), Label:13C(6) (+6)	964.620000	3.000000	-0.001500	-1.600000	64.000000	71.000000	4.637700	2.633300	1.014833	11.580250	3.481300	0.896400	NaN	NaN	NaN	5.828453	3.820437	1.764621	13.471281	4.727137	1.340010	NaN	NaN	NaN	9.649867	4.273787	0.164049	0.067279	0.276738	0.113164	0.093054	0.540498	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	PLPP_HUMAN	PLPP_HUMAN	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	100.000000	0.011900	31680.800000	6.000000	9.000000	9.000000	Spectrum39885 scans:9916,	ARPELALR	A[+28]RPELALR	R	F	99.000000	53.800000	47.400000	30.100000	Dimethyl (+28)	952.580000	3.000000	-0.000048	-0.050000	64.000000	71.000000	4.637700	2.633300	1.014833	11.580250	3.481300	0.896400	NaN	NaN	NaN	5.828453	3.820437	1.764621	13.471281	4.727137	1.340010	NaN	NaN	NaN	9.649867	4.273787	0.164049	0.067279	0.276604	0.113110	0.093017	0.539239	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1 SV=3	CSN3_HUMAN	CSN3_HUMAN	COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1 SV=3	99.600000	0.017300	47856.500000	1.000000	2.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.46196.46196.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46196"	ASALEQFVNSVR	A[+42]SALEQFVNSVR	M	Q	99.700000	85.400000	53.500000	50.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1371.700000	2.000000	-0.000170	-0.120000	2.000000	13.000000	0.535900	0.217233	0.388633	0.570000	0.373500	0.655500	NaN	NaN	NaN	0.673495	0.315166	0.675767	0.663080	0.507163	0.979894	NaN	NaN	NaN	0.668287	0.411164	0.004961	0.146022	0.008360	0.245373	0.092980	0.537984	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1 SV=3	CSN3_HUMAN	CSN3_HUMAN	COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1 SV=3	99.600000	0.017300	47856.500000	1.000000	2.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.46201.46201.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46201"	ASALEQFVNSVR	A[+42]SALEQFVNSVR	M	Q	99.700000	85.600000	53.200000	62.300000	Acetyl (+42)	1361.690000	2.000000	-0.000500	-0.370000	2.000000	13.000000	0.535900	0.217233	0.388633	0.570000	0.373500	0.655500	NaN	NaN	NaN	0.673495	0.315166	0.675767	0.663080	0.507163	0.979894	NaN	NaN	NaN	0.668287	0.411164	0.004961	0.146022	0.008356	0.245254	0.092942	0.536736	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1 SV=3	CSN3_HUMAN	CSN3_HUMAN	COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1 SV=3	100.000000	0.003950	47856.500000	1.000000	3.000000	3.000000	Spectrum72931 scans:49851,	ASALEQFVNSVR	A[+42]SALEQFVNSVR	M	Q	99.200000	56.800000	50.000000	35.500000	Acetyl (+42), Label:13C(6) (+6)	1367.710000	2.000000	0.000002	0.001600	2.000000	13.000000	0.535900	0.217233	0.388633	0.570000	0.373500	0.655500	NaN	NaN	NaN	0.673495	0.315166	0.675767	0.663080	0.507163	0.979894	NaN	NaN	NaN	0.668287	0.411164	0.004961	0.146022	0.008352	0.245136	0.092830	0.534257	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of G kinase-anchoring protein 1 OS=Homo sapiens GN=GKAP1	sp|Q5VSY0-2|GKAP1_HUMAN	GKAP1_HUMAN	Isoform 2 of G kinase-anchoring protein 1 OS=Homo sapiens GN=GKAP1	94.500000	0.004480	36108.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.22105.22105.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22105"	ASAVLSSVPTTASR	A[+42]SAVLSSVPTTASR	M	F	98.600000	57.700000	54.200000	38.400000	Acetyl (+42)	1387.730000	2.000000	-0.005200	-3.700000	2.000000	15.000000	30.358133	2.638933	1.567267	7.004750	9.738600	0.802050	NaN	NaN	NaN	38.152738	3.828610	2.725207	8.148611	13.223708	1.198969	NaN	NaN	NaN	23.150674	8.526159	0.064719	0.267223	0.108912	0.448387	0.092756	0.531801	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	HCF C-terminal chain 6 OS=Homo sapiens GN=HCFC1 PE=4 SV=2	A6NEM2_HUMAN	A6NEM2_HUMAN	HCF C-terminal chain 6 OS=Homo sapiens GN=HCFC1 PE=4 SV=2	98.900000	0.027500	213450.000000	1.000000	4.000000	11.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.41794.41794.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41794"	ASAVSPANLPAVLLQPR	A[+42]SAVSPANLPAVLLQPR	M	W	99.700000	98.400000	57.400000	90.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1754.990000	2.000000	-0.001400	-0.820000	2.000000	18.000000	0.511600	0.258867	0.517867	0.670400	0.353900	0.529300	NaN	NaN	NaN	0.642956	0.375568	0.900481	0.779875	0.480549	0.791240	NaN	NaN	NaN	0.711415	0.428058	0.061074	0.077677	0.102727	0.130275	0.092645	0.530581	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	HCF C-terminal chain 6 OS=Homo sapiens GN=HCFC1 PE=4 SV=2	A6NEM2_HUMAN	A6NEM2_HUMAN	HCF C-terminal chain 6 OS=Homo sapiens GN=HCFC1 PE=4 SV=2	98.900000	0.027500	213450.000000	1.000000	4.000000	11.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.41782.41782.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41782"	ASAVSPANLPAVLLQPR	A[+42]SAVSPANLPAVLLQPR	M	W	99.700000	98.600000	57.300000	84.000000	Acetyl (+42)	1744.980000	2.000000	-0.001200	-0.710000	2.000000	18.000000	0.511600	0.258867	0.517867	0.670400	0.353900	0.529300	NaN	NaN	NaN	0.642956	0.375568	0.900481	0.779875	0.480549	0.791240	NaN	NaN	NaN	0.711415	0.428058	0.061074	0.077677	0.102678	0.130212	0.092607	0.529367	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Enhancer of mRNA-decapping protein 4 OS=Homo sapiens GN=EDC4 PE=1 SV=1	sp|Q6P2E9|EDC4_HUMAN	EDC4_HUMAN	Enhancer of mRNA-decapping protein 4 OS=Homo sapiens GN=EDC4 PE=1 SV=1	97.500000	0.002500	151644.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.30447.30447.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30447"	ASCASIDIEDATQHLR	A[+42]SC[+57]ASIDIEDATQHLR	M	D	99.400000	53.200000	50.500000	52.500000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1837.850000	2.000000	-0.005100	-2.800000	2.000000	17.000000	0.501233	0.958400	1.909033	0.549500	1.012800	1.845700	0.937286	4.316000	9.096443	0.629928	1.390463	3.319481	0.639232	1.375246	2.759100	0.626884	1.838143	4.359039	0.632015	1.534618	0.000035	0.009647	0.000058	0.016163	0.006307	0.036011	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Enhancer of mRNA-decapping protein 4 OS=Homo sapiens GN=EDC4 PE=1 SV=1	sp|Q6P2E9|EDC4_HUMAN	EDC4_HUMAN	Enhancer of mRNA-decapping protein 4 OS=Homo sapiens GN=EDC4 PE=1 SV=1	98.800000	0.004480	151644.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.26344.26344.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26344"	ASCASIDIEDATQHLR	A[+42]SC[+57]ASIDIEDATQHLR	M	D	99.700000	59.800000	50.300000	47.600000	Acetyl (+42), Carbamidomethyl (+57)	1827.840000	2.000000	-0.003700	-2.000000	2.000000	17.000000	0.501233	0.958400	1.909033	0.549500	1.012800	1.845700	0.937286	4.316000	9.096443	0.629928	1.390463	3.319481	0.639232	1.375246	2.759100	0.626884	1.838143	4.359039	0.632015	1.534618	0.000035	0.009647	0.000058	0.016155	0.006304	0.035766	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Enhancer of mRNA-decapping protein 4 OS=Homo sapiens GN=EDC4 PE=1 SV=1	sp|Q6P2E9|EDC4_HUMAN	EDC4_HUMAN	Enhancer of mRNA-decapping protein 4 OS=Homo sapiens GN=EDC4 PE=1 SV=1	96.100000	0.002310	151644.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.32375.32375.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32375"	ASCASIDIEDATQHLR	A[+42]SC[+57]ASIDIEDATQHLR	M	D	99.700000	92.200000	51.900000	84.200000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6) (+6)	1833.860000	2.000000	-0.000560	-0.300000	2.000000	17.000000	0.501233	0.958400	1.909033	0.549500	1.012800	1.845700	0.937286	4.316000	9.096443	0.629928	1.390463	3.319481	0.639232	1.375246	2.759100	0.626884	1.838143	4.359039	0.632015	1.534618	0.000035	0.009647	0.000058	0.016147	0.006302	0.035207	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1	RAGP1_HUMAN	RAGP1_HUMAN	Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1	100.000000	0.004480	63525.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.35213.35213.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35213"	ASEDIAKLAETLAK	A[+42]SEDIAKLAETLAK	M	T	99.000000	56.300000	56.200000	49.000000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	1556.860000	2.000000	-0.001900	-1.200000	2.000000	15.000000	2.204500	0.956700	0.434000	1.113100	0.890100	0.852150	NaN	NaN	NaN	2.770517	1.387997	0.754651	1.294867	1.208636	1.273862	NaN	NaN	NaN	2.032692	1.298316	0.221665	0.043904	0.371943	0.073421	0.092386	0.515219	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS PE=1 SV=5	SYEP_HUMAN	SYEP_HUMAN	Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS PE=1 SV=5	100.000000	0.006590	170575.200000	4.000000	4.000000	5.000000	Spectrum91 scans:7422,	ASEDLKTH	NaN	R	M	99.000000	36.200000	47.900000	15.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	963.510000	3.000000	-0.000110	-0.110000	1416.000000	1423.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1	XPO6_HUMAN	XPO6_HUMAN	Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1	95.700000	0.002630	128869.300000	1.000000	2.000000	2.000000	Spectrum27553 scans:8785,	ASEEASLR	A[+42]SEEASLR	M	A	99.000000	80.900000	44.800000	40.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	913.440000	2.000000	-0.000540	-0.590000	2.000000	9.000000	2.554667	0.803633	0.493667	23.581300	5.131900	0.414450	1.651229	0.553171	0.459700	3.210590	1.165925	0.858401	27.432078	6.968430	0.619553	1.104390	0.235590	0.220289	10.582353	2.789982	0.217402	0.316418	0.364436	0.528633	0.006294	0.034973	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1	XPO6_HUMAN	XPO6_HUMAN	Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1	97.700000	0.021500	128869.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction5A.8795.8795.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8795"	ASEEASLR	A[+42]SEEASLR	M	A	98.900000	51.700000	47.700000	28.900000	Acetyl (+42)	903.430000	2.000000	-0.004300	-4.700000	2.000000	9.000000	2.554667	0.803633	0.493667	23.581300	5.131900	0.414450	1.651229	0.553171	0.459700	3.210590	1.165925	0.858401	27.432078	6.968430	0.619553	1.104390	0.235590	0.220289	10.582353	2.789982	0.217402	0.316418	0.364260	0.528379	0.006291	0.034818	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Centromere/kinetochore protein zw10 homolog OS=Homo sapiens GN=ZW10 PE=1 SV=3	ZW10_HUMAN	ZW10_HUMAN	Centromere/kinetochore protein zw10 homolog OS=Homo sapiens GN=ZW10 PE=1 SV=3	100.000000	0.012500	88814.500000	2.000000	4.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.44780.44780.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44780"	ASFVTEVLAH	A[+42]SFVTEVLAH	M	S	99.700000	70.600000	51.600000	60.900000	Acetyl (+42)	1114.570000	2.000000	0.000680	0.610000	2.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Centromere/kinetochore protein zw10 homolog OS=Homo sapiens GN=ZW10 PE=1 SV=3	ZW10_HUMAN	ZW10_HUMAN	Centromere/kinetochore protein zw10 homolog OS=Homo sapiens GN=ZW10 PE=1 SV=3	100.000000	0.012500	88814.500000	2.000000	4.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.41416.41416.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41416"	ASFVTEVLAHSGR	A[+42]SFVTEVLAHSGR	M	L	98.900000	57.300000	54.500000	48.300000	Acetyl (+42), Label:13C(6) (+6)	1420.750000	2.000000	0.004900	3.400000	2.000000	14.000000	0.936300	0.538400	0.575100	0.422450	0.283300	0.677050	NaN	NaN	NaN	1.176700	0.781120	1.000000	0.491435	0.384683	1.012109	NaN	NaN	NaN	0.834067	0.582902	0.248141	0.208676	0.415364	0.347626	0.092201	0.508425	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Centromere/kinetochore protein zw10 homolog OS=Homo sapiens GN=ZW10 PE=1 SV=3	ZW10_HUMAN	ZW10_HUMAN	Centromere/kinetochore protein zw10 homolog OS=Homo sapiens GN=ZW10 PE=1 SV=3	100.000000	0.008960	88814.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.35081.35081.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35081"	ASFVTEVLAHSGR	A[+42]SFVTEVLAHSGR	M	L	99.700000	61.400000	53.500000	50.100000	Acetyl (+42)	1414.720000	2.000000	-0.000930	-0.650000	2.000000	14.000000	0.936300	0.538400	0.575100	0.422450	0.283300	0.677050	NaN	NaN	NaN	1.176700	0.781120	1.000000	0.491435	0.384683	1.012109	NaN	NaN	NaN	0.834067	0.582902	0.248141	0.208676	0.414964	0.347126	0.092165	0.507310	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Centromere/kinetochore protein zw10 homolog OS=Homo sapiens GN=ZW10 PE=1 SV=3	ZW10_HUMAN	ZW10_HUMAN	Centromere/kinetochore protein zw10 homolog OS=Homo sapiens GN=ZW10 PE=1 SV=3	100.000000	0.008960	88814.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.35100.35100.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35100"	ASFVTEVLAHSGR	A[+42]SFVTEVLAHSGR	M	L	99.700000	73.700000	53.800000	56.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1424.730000	2.000000	-0.000260	-0.180000	2.000000	14.000000	0.936300	0.538400	0.575100	0.422450	0.283300	0.677050	NaN	NaN	NaN	1.176700	0.781120	1.000000	0.491435	0.384683	1.012109	NaN	NaN	NaN	0.834067	0.582902	0.248141	0.208676	0.414764	0.346794	0.092128	0.506200	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	TERA_HUMAN	TERA_HUMAN	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	100.000000	0.007900	89306.800000	2.000000	3.000000	6.000000	Spectrum22206 scans:12841,	ASGADSKGDDLSTAILKQK	A[+42]SGADSKGDDLSTAILKQK	M	N	99.700000	51.800000	53.600000	48.900000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	2042.160000	3.000000	-0.003200	-1.600000	2.000000	20.000000	33.530500	14.991167	1.145400	382.916950	231.373550	0.611200	NaN	NaN	1.395614	42.139625	21.749444	1.991654	445.446503	314.174146	0.913671	NaN	NaN	0.668782	243.793064	167.961795	0.000000	0.000000	0.000000	0.000000	0.092091	0.503994	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	TERA_HUMAN	TERA_HUMAN	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	100.000000	0.007900	89306.800000	2.000000	3.000000	6.000000	Spectrum22207 scans:12855,	ASGADSKGDDLSTAILKQK	A[+42]SGADSKGDDLSTAILKQK	M	N	99.700000	87.600000	54.000000	78.800000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	2054.130000	3.000000	-0.001900	-0.950000	2.000000	20.000000	33.530500	14.991167	1.145400	382.916950	231.373550	0.611200	NaN	NaN	1.395614	42.139625	21.749444	1.991654	445.446503	314.174146	0.913671	NaN	NaN	0.668782	243.793064	167.961795	0.000000	0.000000	0.000000	0.000000	0.092018	0.502899	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Enoyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=ECHS1 PE=1 SV=4	ECHM_HUMAN	ECHM_HUMAN	Enoyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=ECHS1 PE=1 SV=4	100.000000	0.006590	31370.200000	1.000000	2.000000	5.000000	Spectrum52251 scans:24172,	ASGANFEYIIAEKR	A[+28]SGANFEYIIAEKR	F	G	99.700000	78.600000	52.200000	65.400000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1633.910000	3.000000	-0.000130	-0.082000	28.000000	41.000000	8.449200	6.124433	0.709600	32.186450	22.257850	0.668250	NaN	NaN	NaN	10.618575	8.885434	1.233872	37.442431	30.223165	0.998954	NaN	NaN	NaN	24.030503	19.554299	0.000000	0.037528	0.000000	0.062188	0.091981	0.501808	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Enoyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=ECHS1 PE=1 SV=4	ECHM_HUMAN	ECHM_HUMAN	Enoyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=ECHS1 PE=1 SV=4	97.700000	0.002500	31370.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.22711.22711.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22711"	ASGANFEYIIAEKR	A[+28]SGANFEYIIAEKR	F	G	99.400000	74.200000	56.000000	54.300000	Dimethyl (+28), Dimethyl (+28)	1623.860000	3.000000	0.001500	0.900000	28.000000	41.000000	8.449200	6.124433	0.709600	32.186450	22.257850	0.668250	NaN	NaN	NaN	10.618575	8.885434	1.233872	37.442431	30.223165	0.998954	NaN	NaN	NaN	24.030503	19.554299	0.000000	0.037528	0.000000	0.062070	0.091945	0.500722	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Enoyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=ECHS1 PE=1 SV=4	ECHM_HUMAN	ECHM_HUMAN	Enoyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=ECHS1 PE=1 SV=4	91.800000	0.006940	31370.200000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction6A.24208.24208.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24208"	ASGANFEYIIAEKR	A[+28]SGANFEYIIAEKR	F	G	99.400000	83.100000	56.200000	71.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1641.880000	3.000000	-0.006400	-3.900000	28.000000	41.000000	8.449200	6.124433	0.709600	32.186450	22.257850	0.668250	NaN	NaN	NaN	10.618575	8.885434	1.233872	37.442431	30.223165	0.998954	NaN	NaN	NaN	24.030503	19.554299	0.000000	0.037528	0.000000	0.062011	0.091908	0.499640	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Proto-oncogene c-Rel OS=Homo sapiens GN=REL PE=1 SV=1	REL_HUMAN	REL_HUMAN	Proto-oncogene c-Rel OS=Homo sapiens GN=REL PE=1 SV=1	98.900000	0.004480	68502.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.33157.33157.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33157"	ASGAYNPYIEIIEQPR	A[+42]SGAYNPYIEIIEQPR	M	Q	99.700000	65.600000	54.900000	65.600000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1871.930000	2.000000	-0.003300	-1.700000	2.000000	17.000000	2.698400	0.409300	0.352400	0.773150	0.353950	0.458250	NaN	NaN	NaN	3.391228	0.593820	0.612763	0.899404	0.480616	0.685029	NaN	NaN	NaN	2.145316	0.537218	0.334959	0.066828	0.556660	0.110373	0.091872	0.496423	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Aminopeptidase B OS=Homo sapiens GN=RNPEP PE=4 SV=1	A6NKB8_HUMAN	A6NKB8_HUMAN	Aminopeptidase B OS=Homo sapiens GN=RNPEP PE=4 SV=1	100.000000	0.006590	68152.300000	3.000000	5.000000	5.000000	Spectrum33693 scans:2796,	ASGEHSPGSGAAR	A[+42]SGEHSPGSGAAR	M	R	99.700000	62.100000	43.800000	50.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1234.560000	2.000000	-0.000980	-0.790000	2.000000	14.000000	0.570967	0.333633	0.585600	NaN	NaN	NaN	NaN	NaN	NaN	0.717565	0.484041	1.018258	NaN	NaN	NaN	NaN	NaN	NaN	0.717565	0.484041	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Aminopeptidase B OS=Homo sapiens GN=RNPEP PE=4 SV=1	A6NKB8_HUMAN	A6NKB8_HUMAN	Aminopeptidase B OS=Homo sapiens GN=RNPEP PE=4 SV=1	100.000000	0.006590	68152.300000	3.000000	5.000000	5.000000	Spectrum33699 scans:2803,	ASGEHSPGSGAAR	A[+42]SGEHSPGSGAAR	M	R	99.700000	70.900000	43.300000	61.000000	Acetyl (+42)	1224.550000	2.000000	-0.000390	-0.320000	2.000000	14.000000	0.570967	0.333633	0.585600	NaN	NaN	NaN	NaN	NaN	NaN	0.717565	0.484041	1.018258	NaN	NaN	NaN	NaN	NaN	NaN	0.717565	0.484041	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Aminopeptidase B OS=Homo sapiens GN=RNPEP PE=4 SV=1	A6NKB8_HUMAN	A6NKB8_HUMAN	Aminopeptidase B OS=Homo sapiens GN=RNPEP PE=4 SV=1	100.000000	0.006590	68152.300000	3.000000	5.000000	5.000000	Spectrum33691 scans:2794,	ASGEHSPGSGAAR	A[+42]SGEHSPGSGAAR	M	R	99.700000	74.000000	45.000000	61.400000	Acetyl (+42), Label:13C(6) (+6)	1230.570000	2.000000	-0.000500	-0.400000	2.000000	14.000000	0.570967	0.333633	0.585600	NaN	NaN	NaN	NaN	NaN	NaN	0.717565	0.484041	1.018258	NaN	NaN	NaN	NaN	NaN	NaN	0.717565	0.484041	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.020200	17285.000000	3.000000	6.000000	7.000000	Nsco_Tails_biological_replicate1_apoptosis.30995.30995.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30995"	ASGQAFELILSPR	A[+28]SGQAFELILSPR	R	S	99.700000	71.100000	55.400000	68.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1425.790000	2.000000	0.002500	1.800000	15.000000	27.000000	0.545000	0.266267	0.488567	1.276950	0.348700	1.218100	NaN	NaN	NaN	0.684932	0.386304	0.849533	1.485473	0.473488	1.820913	NaN	NaN	NaN	1.085202	0.429896	0.224958	0.064334	0.372071	0.106051	0.091690	0.492199	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.069800	17285.000000	7.000000	24.000000	53.000000	Spectrum60130 scans:33411,	ASGQAFELILSPR	A[+28]SGQAFELILSPR	R	S	99.700000	105.000000	51.200000	87.600000	Dimethyl (+28), Label:13C(6) (+6)	1421.800000	2.000000	-0.002100	-1.500000	15.000000	27.000000	0.545000	0.266267	0.488567	1.276950	0.348700	1.218100	NaN	NaN	NaN	0.684932	0.386304	0.849533	1.485473	0.473488	1.820913	NaN	NaN	NaN	1.085202	0.429896	0.224958	0.064334	0.371716	0.106001	0.091653	0.491154	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.007000	17285.000000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.55808.55808.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=55808"	ASGQAFELILSPR	A[+28]SGQAFELILSPR	R	S	99.700000	98.400000	55.300000	82.000000	Dimethyl (+28)	1415.780000	2.000000	-0.000990	-0.700000	15.000000	27.000000	0.545000	0.266267	0.488567	1.276950	0.348700	1.218100	NaN	NaN	NaN	0.684932	0.386304	0.849533	1.485473	0.473488	1.820913	NaN	NaN	NaN	1.085202	0.429896	0.224958	0.064334	0.371539	0.105951	0.091472	0.490113	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2	sp|Q92797|SYMPK_HUMAN	SYMPK_HUMAN	Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2	99.000000	0.004480	141135.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.4044.4044.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4044"	ASGSGDSVTR	A[+42]SGSGDSVTR	M	R	99.700000	85.700000	46.400000	60.400000	Acetyl (+42)	977.440000	2.000000	-0.000460	-0.470000	2.000000	11.000000	0.348233	0.312500	0.885067	0.290650	0.234600	0.800700	NaN	NaN	NaN	0.437644	0.453380	1.538979	0.338113	0.318555	1.196950	NaN	NaN	NaN	0.387878	0.385968	0.081236	0.110081	0.134105	0.181205	0.091436	0.489077	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.031600	50123.200000	9.000000	17.000000	24.000000	Spectrum69058 scans:43888,	ASGTTLLEALDCILPPTRPTDKPLR	A[+28]SGTTLLEALDC[+57]ILPPTRPTDKPLR	N	L	98.500000	29.200000	55.600000	19.100000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2806.600000	4.000000	0.001500	0.540000	223.000000	247.000000	1.486000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.867538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.867538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3	COF1_HUMAN	COF1_HUMAN	Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3	100.000000	0.008640	18485.100000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.39835.39835.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39835"	ASGVAVSDGVIKVFNDMKVR	A[+42]SGVAVSDGVIKVFNDMKVR	M	K	99.700000	84.400000	59.600000	51.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2215.220000	2.000000	-0.002800	-1.300000	2.000000	21.000000	595.530667	213.843567	0.454300	578.658750	464.633550	1.040400	NaN	NaN	NaN	748.436178	310.247945	0.789950	673.152537	630.909838	1.555273	NaN	NaN	NaN	710.794358	470.578891	0.000000	0.000000	0.000000	0.000000	0.091328	0.487018	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3	COF1_HUMAN	COF1_HUMAN	Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3	100.000000	0.009330	18485.100000	1.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.63430.63430.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=63430"	ASGVAVSDGVIKVFNDMKVR	A[+42]SGVAVSDGVIKVFNDMKVR	M	K	98.700000	64.100000	59.300000	56.300000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	2189.180000	3.000000	-0.006800	-3.100000	2.000000	21.000000	595.530667	213.843567	0.454300	578.658750	464.633550	1.040400	NaN	NaN	NaN	748.436178	310.247945	0.789950	673.152537	630.909838	1.555273	NaN	NaN	NaN	710.794358	470.578891	0.000000	0.000000	0.000000	0.000000	0.091292	0.485994	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3	COF1_HUMAN	COF1_HUMAN	Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3	100.000000	0.009330	18485.100000	1.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.63438.63438.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=63438"	ASGVAVSDGVIKVFNDMKVR	A[+42]SGVAVSDGVIKVFNDMKVR	M	K	99.400000	69.000000	59.300000	55.700000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2203.260000	3.000000	0.000850	0.390000	2.000000	21.000000	595.530667	213.843567	0.454300	578.658750	464.633550	1.040400	NaN	NaN	NaN	748.436178	310.247945	0.789950	673.152537	630.909838	1.555273	NaN	NaN	NaN	710.794358	470.578891	0.000000	0.000000	0.000000	0.000000	0.091256	0.484976	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3	COF1_HUMAN	COF1_HUMAN	Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3	100.000000	0.009330	18485.100000	1.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.56098.56098.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=56098"	ASGVAVSDGVIKVFNDMKVR	A[+42]SGVAVSDGVIKVFNDMKVR	M	K	99.700000	83.800000	59.300000	76.300000	Acetyl (+42), Dimethyl (+28), Oxidation (+16), Dimethyl (+28)	2205.190000	2.000000	0.002600	1.200000	2.000000	21.000000	595.530667	213.843567	0.454300	578.658750	464.633550	1.040400	NaN	NaN	NaN	748.436178	310.247945	0.789950	673.152537	630.909838	1.555273	NaN	NaN	NaN	710.794358	470.578891	0.000000	0.000000	0.000000	0.000000	0.091184	0.483961	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Destrin OS=Homo sapiens GN=DSTN PE=4 SV=1	F6RFD5_HUMAN	F6RFD5_HUMAN	Destrin OS=Homo sapiens GN=DSTN PE=4 SV=1	97.400000	0.005760	15379.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.18136.18136.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18136"	ASGVQVADEVCR	A[+42]SGVQVADEVC[+57]R	M	I	99.700000	87.600000	49.000000	53.600000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1341.620000	2.000000	-0.001300	-0.970000	2.000000	13.000000	0.610500	0.324500	0.531633	0.707150	0.811900	1.148150	0.585229	1.514014	13.390586	0.767249	0.470790	0.924419	0.822626	1.102451	1.716347	0.391418	0.644804	6.416804	0.660431	0.739348	0.039584	0.059207	0.065160	0.097048	0.006215	0.032928	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Destrin OS=Homo sapiens GN=DSTN PE=4 SV=1	F6RFD5_HUMAN	F6RFD5_HUMAN	Destrin OS=Homo sapiens GN=DSTN PE=4 SV=1	96.900000	0.013200	15379.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction2A.14780.14780.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14780"	ASGVQVADEVCR	A[+42]SGVQVADEVC[+57]R	M	I	99.700000	80.500000	49.400000	51.900000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6) (+6)	1337.630000	2.000000	-0.008700	-6.500000	2.000000	13.000000	0.610500	0.324500	0.531633	0.707150	0.811900	1.148150	0.585229	1.514014	13.390586	0.767249	0.470790	0.924419	0.822626	1.102451	1.716347	0.391418	0.644804	6.416804	0.660431	0.739348	0.039584	0.059207	0.065129	0.097002	0.006212	0.032860	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Destrin OS=Homo sapiens GN=DSTN PE=4 SV=1	F6RFD5_HUMAN	F6RFD5_HUMAN	Destrin OS=Homo sapiens GN=DSTN PE=4 SV=1	97.700000	0.004670	15379.600000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.35058.35058.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35058"	ASGVQVADEVCR	A[+42]SGVQVADEVC[+57]R	M	I	99.700000	76.800000	48.500000	44.700000	Acetyl (+42), Carbamidomethyl (+57)	1331.610000	2.000000	-0.002700	-2.000000	2.000000	13.000000	0.610500	0.324500	0.531633	0.707150	0.811900	1.148150	0.585229	1.514014	13.390586	0.767249	0.470790	0.924419	0.822626	1.102451	1.716347	0.391418	0.644804	6.416804	0.660431	0.739348	0.039584	0.059207	0.065098	0.096956	0.006210	0.032792	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Zinc finger CCCH-type antiviral protein 1 OS=Homo sapiens GN=ZC3HAV1	sp|Q7Z2W4|ZCCHV_HUMAN	ZCCHV_HUMAN	Zinc finger CCCH-type antiviral protein 1 OS=Homo sapiens GN=ZC3HAV1 PE=1 SV=3	100.000000	0.003950	101414.600000	2.000000	3.000000	3.000000	Spectrum9385 scans:34123,	ASLEDAPVDDLTR	A[+28]SLEDAPVDDLTR	R	K	99.000000	67.000000	49.000000	51.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1438.710000	2.000000	-0.004400	-3.100000	283.000000	295.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Zinc finger CCCH-type antiviral protein 1 OS=Homo sapiens GN=ZC3HAV1	sp|Q7Z2W4-2|ZCCHV_HUMAN	ZCCHV_HUMAN	Isoform 2 of Zinc finger CCCH-type antiviral protein 1 OS=Homo sapiens GN=ZC3HAV1	100.000000	0.003950	77885.300000	2.000000	3.000000	3.000000	Spectrum9376 scans:34095,	ASLEDAPVDDLTR	A[+28]SLEDAPVDDLTR	R	K	98.800000	61.400000	48.700000	34.500000	Dimethyl (+28)	1428.710000	2.000000	-0.004000	-2.800000	283.000000	295.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Proteasome activator complex subunit 3 OS=Homo sapiens GN=PSME3	sp|P61289|PSME3_HUMAN	PSME3_HUMAN	Proteasome activator complex subunit 3 OS=Homo sapiens GN=PSME3 PE=1 SV=1	100.000000	0.005760	29489.300000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.23795.23795.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23795"	ASLLKVDQEVK	A[+42]SLLKVDQEVK	M	L	98.800000	67.500000	54.900000	51.100000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	1326.770000	2.000000	-0.011000	-8.000000	2.000000	12.000000	1.369733	0.539700	0.403067	3.254450	1.009400	1.189300	65.066929	24.261300	439.555043	1.721419	0.783006	0.700864	3.785895	1.370629	1.777861	43.518663	10.332657	210.635922	16.341992	4.162097	0.173327	0.306892	0.284236	0.501844	0.006195	0.032321	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Proteasome activator complex subunit 3 OS=Homo sapiens GN=PSME3	tr|K7ESG5|K7ESG5_HUMAN	K7ESG5_HUMAN	Proteasome activator complex subunit 3 OS=Homo sapiens GN=PSME3 PE=1 SV=1	100.000000	0.005270	0.000000	1.000000	2.000000	4.000000	Spectrum30979 scans:18817,	ASLLKVDQEVK	A[+42]SLLKVDQEVK	M	L	98.600000	49.000000	48.800000	31.300000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1334.830000	2.000000	-0.000600	-0.450000	0.000000	0.000000	1.369733	0.539700	0.403067	3.254450	1.009400	1.189300	65.066929	24.261300	439.555043	1.721419	0.783006	0.700864	3.785895	1.370629	1.777861	43.518663	10.332657	210.635922	16.341992	4.162097	0.173327	0.306892	0.284102	0.501608	0.006193	0.032255	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Proteasome activator complex subunit 3 OS=Homo sapiens GN=PSME3	tr|K7ESG5|K7ESG5_HUMAN	K7ESG5_HUMAN	Proteasome activator complex subunit 3 OS=Homo sapiens GN=PSME3 PE=1 SV=1	100.000000	0.005270	0.000000	1.000000	2.000000	4.000000	Spectrum23179 scans:15465,	ASLLKVDQEVK	A[+42]SLLKVDQEVK	M	L	99.700000	66.800000	49.800000	45.100000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1342.800000	2.000000	0.000360	0.260000	0.000000	0.000000	1.369733	0.539700	0.403067	3.254450	1.009400	1.189300	65.066929	24.261300	439.555043	1.721419	0.783006	0.700864	3.785895	1.370629	1.777861	43.518663	10.332657	210.635922	16.341992	4.162097	0.173327	0.306892	0.283968	0.501372	0.006190	0.032189	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 3 of Dynactin subunit 4 OS=Homo sapiens GN=DCTN4	sp|Q9UJW0-3|DCTN4_HUMAN	DCTN4_HUMAN	Isoform 3 of Dynactin subunit 4 OS=Homo sapiens GN=DCTN4	96.000000	0.004480	53134.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.17451.17451.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17451"	ASLLQSDR	A[+42]SLLQSDR	M	V	99.000000	58.800000	50.700000	18.100000	Acetyl (+42)	930.480000	2.000000	0.000330	0.360000	2.000000	9.000000	0.624333	0.601600	0.952967	0.653350	0.384200	0.587600	NaN	NaN	NaN	0.784634	0.872812	1.657045	0.760041	0.521692	0.878392	NaN	NaN	NaN	0.772337	0.697252	0.010135	0.157029	0.016597	0.256420	0.090755	0.471147	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.123000	57471.900000	10.000000	25.000000	49.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.43656.43656.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43656"	ASLSLAPVNIFK	A[+42]SLSLAPVNIFK	M	A	98.800000	52.500000	54.800000	33.200000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1336.780000	2.000000	-0.002500	-1.900000	2.000000	13.000000	38.273800	15.430400	0.403200	53.951100	32.748500	0.620950	NaN	NaN	NaN	48.100792	22.386691	0.701095	62.761204	44.468056	0.928246	NaN	NaN	NaN	55.430998	33.427374	0.000000	0.000000	0.000000	0.000000	0.090719	0.470190	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.107000	57471.900000	12.000000	23.000000	37.000000	Nsco_Tails_biological_replicate1_apoptosis.38700.38700.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38700"	ASLSLAPVNIFKAGADEER	A[+42]SLSLAPVNIFKAGADEER	M	A	99.700000	103.000000	58.000000	89.900000	Acetyl (+42), Dimethyl (+28)	2057.080000	2.000000	-0.002300	-1.100000	2.000000	20.000000	91.522333	46.475033	0.527067	967.270250	654.736550	0.674650	NaN	NaN	NaN	115.021155	67.426782	0.916478	1125.223499	889.044131	1.008521	NaN	NaN	NaN	620.122327	478.235456	0.000000	0.000000	0.000000	0.000000	0.090683	0.464525	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.038200	57471.900000	5.000000	15.000000	29.000000	Spectrum67144 scans:41598,	ASLSLAPVNIFKAGADEER	A[+42]SLSLAPVNIFKAGADEER	M	A	99.700000	105.000000	54.000000	77.500000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2067.120000	2.000000	-0.002700	-1.300000	2.000000	20.000000	91.522333	46.475033	0.527067	967.270250	654.736550	0.674650	NaN	NaN	NaN	115.021155	67.426782	0.916478	1125.223499	889.044131	1.008521	NaN	NaN	NaN	620.122327	478.235456	0.000000	0.000000	0.000000	0.000000	0.090648	0.463594	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.038200	57471.900000	5.000000	15.000000	29.000000	Spectrum13187 scans:48941,	ASLSLAPVNIFKAGADEER	A[+42]SLSLAPVNIFKAGADEER	M	A	99.700000	122.000000	53.800000	99.100000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2075.100000	2.000000	-0.000500	-0.240000	2.000000	20.000000	91.522333	46.475033	0.527067	967.270250	654.736550	0.674650	NaN	NaN	NaN	115.021155	67.426782	0.916478	1125.223499	889.044131	1.008521	NaN	NaN	NaN	620.122327	478.235456	0.000000	0.000000	0.000000	0.000000	0.090612	0.462667	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.027700	40405.300000	7.000000	17.000000	21.000000	Spectrum71642 scans:47418,	ASLYNAVTIEDVQKLAAF	A[+28]SLYNAVTIEDVQKLAAF	R	M	99.000000	37.700000	53.800000	24.800000	Dimethyl (+28), Dimethyl:2H(4) (+32)	2012.120000	3.000000	0.001700	0.860000	343.000000	360.000000	3.152400	0.134500	0.264100	0.322100	2.356550	NaN	NaN	NaN	NaN	3.961795	0.195135	0.459224	0.374698	3.199878	NaN	NaN	NaN	NaN	2.168246	1.697506	0.439968	0.461226	0.718443	0.751386	0.090577	0.461743	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.027700	40405.300000	7.000000	17.000000	21.000000	Spectrum71611 scans:47383,	ASLYNAVTIEDVQKLAAF	A[+28]SLYNAVTIEDVQKLAAF	R	M	99.700000	59.800000	53.900000	48.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	2016.110000	3.000000	0.002900	1.400000	343.000000	360.000000	3.152400	0.134500	0.264100	0.322100	2.356550	NaN	NaN	NaN	NaN	3.961795	0.195135	0.459224	0.374698	3.199878	NaN	NaN	NaN	NaN	2.168246	1.697506	0.439968	0.461226	0.718105	0.751034	0.090541	0.460823	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	E7ENZ3_HUMAN	E7ENZ3_HUMAN	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	100.000000	0.018400	53831.900000	4.000000	9.000000	14.000000	Spectrum22368 scans:16652,	ASMGTLAFDEYGR	A[+42]SMGTLAFDEYGR	M	P	99.700000	80.000000	43.600000	68.200000	Acetyl (+42), Oxidation (+16), Label:13C(6) (+6)	1480.660000	2.000000	-0.001100	-0.710000	2.000000	14.000000	0.619933	0.245367	0.394267	0.641250	0.436550	0.681200	NaN	NaN	NaN	0.779104	0.355982	0.685562	0.745965	0.592776	1.018312	NaN	NaN	NaN	0.762535	0.474379	0.013831	0.155708	0.022565	0.253428	0.090506	0.459907	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	E7ENZ3_HUMAN	E7ENZ3_HUMAN	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	100.000000	0.080100	53831.900000	2.000000	10.000000	32.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33566.33566.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33566"	ASMGTLAFDEYGR	A[+42]SMGTLAFDEYGR	M	P	99.700000	68.600000	46.300000	62.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1468.650000	2.000000	-0.007900	-5.300000	2.000000	14.000000	0.619933	0.245367	0.394267	0.641250	0.436550	0.681200	NaN	NaN	NaN	0.779104	0.355982	0.685562	0.745965	0.592776	1.018312	NaN	NaN	NaN	0.762535	0.474379	0.013831	0.155708	0.022554	0.253309	0.090471	0.457181	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	E7ENZ3_HUMAN	E7ENZ3_HUMAN	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	100.000000	0.080100	53831.900000	2.000000	10.000000	32.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33562.33562.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33562"	ASMGTLAFDEYGR	A[+42]SMGTLAFDEYGR	M	P	99.700000	63.900000	46.600000	53.000000	Acetyl (+42)	1458.640000	2.000000	-0.001600	-1.100000	2.000000	14.000000	0.619933	0.245367	0.394267	0.641250	0.436550	0.681200	NaN	NaN	NaN	0.779104	0.355982	0.685562	0.745965	0.592776	1.018312	NaN	NaN	NaN	0.762535	0.474379	0.013831	0.155708	0.022544	0.252953	0.090435	0.456279	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	E7ENZ3_HUMAN	E7ENZ3_HUMAN	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	100.000000	0.080100	53831.900000	2.000000	10.000000	32.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.25905.25905.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25905"	ASMGTLAFDEYGR	A[+42]SMGTLAFDEYGR	M	P	99.700000	66.600000	45.300000	66.000000	Acetyl (+42), Oxidation (+16)	1474.640000	2.000000	-0.001400	-0.960000	2.000000	14.000000	0.619933	0.245367	0.394267	0.641250	0.436550	0.681200	NaN	NaN	NaN	0.779104	0.355982	0.685562	0.745965	0.592776	1.018312	NaN	NaN	NaN	0.762535	0.474379	0.013831	0.155708	0.022533	0.252717	0.090400	0.453595	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	E7ENZ3_HUMAN	E7ENZ3_HUMAN	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	100.000000	0.080100	53831.900000	2.000000	10.000000	32.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.27812.27812.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27812"	ASMGTLAFDEYGR	A[+42]SMGTLAFDEYGR	M	P	99.700000	72.200000	45.500000	66.000000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10)	1484.650000	2.000000	-0.002800	-1.900000	2.000000	14.000000	0.619933	0.245367	0.394267	0.641250	0.436550	0.681200	NaN	NaN	NaN	0.779104	0.355982	0.685562	0.745965	0.592776	1.018312	NaN	NaN	NaN	0.762535	0.474379	0.013831	0.155708	0.022522	0.252598	0.090365	0.452707	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	E7ENZ3_HUMAN	E7ENZ3_HUMAN	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	100.000000	0.018400	53831.900000	4.000000	9.000000	14.000000	Spectrum13142 scans:48892,	ASMGTLAFDEYGRPF	A[+42]SMGTLAFDEYGRPF	M	L	99.700000	77.800000	45.300000	65.800000	Acetyl (+42), Oxidation (+16), Label:13C(6) (+6)	1724.780000	2.000000	-0.001900	-1.100000	2.000000	16.000000	6.515033	6.065767	0.577767	0.674950	0.449300	0.665950	NaN	NaN	NaN	8.187801	8.800319	1.004637	0.785168	0.610089	0.995515	NaN	NaN	NaN	4.486485	4.705204	0.439138	0.455936	0.714731	0.739299	0.090329	0.451823	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	E7ENZ3_HUMAN	E7ENZ3_HUMAN	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	100.000000	0.080100	53831.900000	2.000000	10.000000	32.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38188.38188.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38188"	ASMGTLAFDEYGRPF	A[+42]SMGTLAFDEYGRPF	M	L	99.700000	72.300000	48.000000	65.100000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10)	1728.770000	2.000000	0.000400	0.230000	2.000000	16.000000	6.515033	6.065767	0.577767	0.674950	0.449300	0.665950	NaN	NaN	NaN	8.187801	8.800319	1.004637	0.785168	0.610089	0.995515	NaN	NaN	NaN	4.486485	4.705204	0.439138	0.455936	0.714396	0.738953	0.090294	0.450942	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	E7ENZ3_HUMAN	E7ENZ3_HUMAN	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	100.000000	0.080100	53831.900000	2.000000	10.000000	32.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.39584.39584.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39584"	ASMGTLAFDEYGRPF	A[+42]SMGTLAFDEYGRPF	M	L	99.700000	76.100000	47.200000	75.200000	Acetyl (+42), Oxidation (+16)	1718.760000	2.000000	-0.003700	-2.200000	2.000000	16.000000	6.515033	6.065767	0.577767	0.674950	0.449300	0.665950	NaN	NaN	NaN	8.187801	8.800319	1.004637	0.785168	0.610089	0.995515	NaN	NaN	NaN	4.486485	4.705204	0.439138	0.455936	0.713393	0.738608	0.090259	0.450065	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	E7ENZ3_HUMAN	E7ENZ3_HUMAN	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	100.000000	0.080100	53831.900000	2.000000	10.000000	32.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.42840.42840.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42840"	ASMGTLAFDEYGRPF	A[+42]SMGTLAFDEYGRPF	M	L	99.700000	87.200000	48.400000	82.700000	Acetyl (+42)	1702.760000	2.000000	-0.001700	-0.990000	2.000000	16.000000	6.515033	6.065767	0.577767	0.674950	0.449300	0.665950	NaN	NaN	NaN	8.187801	8.800319	1.004637	0.785168	0.610089	0.995515	NaN	NaN	NaN	4.486485	4.705204	0.439138	0.455936	0.712726	0.738264	0.090224	0.448320	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	E7ENZ3_HUMAN	E7ENZ3_HUMAN	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	100.000000	0.080100	53831.900000	2.000000	10.000000	32.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.42886.42886.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42886"	ASMGTLAFDEYGRPF	A[+42]SMGTLAFDEYGRPF	M	L	99.700000	93.800000	49.900000	92.700000	Acetyl (+42), Label:13C(6) (+6)	1708.780000	2.000000	-0.002900	-1.700000	2.000000	16.000000	6.515033	6.065767	0.577767	0.674950	0.449300	0.665950	NaN	NaN	NaN	8.187801	8.800319	1.004637	0.785168	0.610089	0.995515	NaN	NaN	NaN	4.486485	4.705204	0.439138	0.455936	0.712392	0.737919	0.090188	0.447453	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	E7ENZ3_HUMAN	E7ENZ3_HUMAN	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	100.000000	0.080100	53831.900000	2.000000	10.000000	32.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.42843.42843.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42843"	ASMGTLAFDEYGRPF	A[+42]SMGTLAFDEYGRPF	M	L	99.700000	93.500000	48.800000	89.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1712.770000	2.000000	-0.001500	-0.880000	2.000000	16.000000	6.515033	6.065767	0.577767	0.674950	0.449300	0.665950	NaN	NaN	NaN	8.187801	8.800319	1.004637	0.785168	0.610089	0.995515	NaN	NaN	NaN	4.486485	4.705204	0.439138	0.455936	0.712059	0.737575	0.090153	0.446589	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Chromobox protein homolog 3 OS=Homo sapiens GN=CBX3 PE=1 SV=4	CBX3_HUMAN	CBX3_HUMAN	Chromobox protein homolog 3 OS=Homo sapiens GN=CBX3 PE=1 SV=4	100.000000	0.003950	20794.000000	2.000000	3.000000	3.000000	Spectrum35094 scans:4371,	ASNKTTLQK	A[+42]SNKTTLQK	M	M	99.200000	54.400000	48.900000	31.600000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1103.650000	2.000000	-0.000520	-0.470000	2.000000	10.000000	1.612800	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.026895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.026895	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369|FLNB_HUMAN	FLNB_HUMAN	Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2	100.000000	0.018400	278140.800000	8.000000	12.000000	14.000000	Spectrum20096 scans:14857,	ASQEIPASPFR	A[+28]SQEIPASPFR	F	V	99.200000	63.700000	49.800000	16.400000	Dimethyl (+28), Label:13C(6) (+6)	1235.660000	2.000000	0.000990	0.800000	826.000000	836.000000	8.345933	0.458600	0.319467	19.993300	1.619800	0.133900	NaN	NaN	NaN	10.488794	0.665345	0.555498	23.258165	2.199470	0.200164	NaN	NaN	NaN	16.873479	1.432408	0.000000	0.312992	0.000000	0.505861	0.090083	0.443167	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369|FLNB_HUMAN	FLNB_HUMAN	Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2	100.000000	0.018400	278140.800000	8.000000	12.000000	14.000000	Spectrum20091 scans:14846,	ASQEIPASPFR	A[+28]SQEIPASPFR	F	V	99.700000	64.500000	49.300000	16.900000	Dimethyl (+28)	1229.640000	2.000000	-0.000600	-0.490000	826.000000	836.000000	8.345933	0.458600	0.319467	19.993300	1.619800	0.133900	NaN	NaN	NaN	10.488794	0.665345	0.555498	23.258165	2.199470	0.200164	NaN	NaN	NaN	16.873479	1.432408	0.000000	0.312992	0.000000	0.505625	0.090048	0.442320	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Melanoma-associated antigen D4 OS=Homo sapiens GN=MAGED4	sp|Q96JG8-2|MAGD4_HUMAN	MAGD4_HUMAN	Isoform 2 of Melanoma-associated antigen D4 OS=Homo sapiens GN=MAGED4	94.200000	0.001320	81067.400000	1.000000	1.000000	1.000000	Spectrum17431 scans:8281,	ASQPSLTVR	NaN	R	A	98.600000	52.800000	48.100000	10.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	995.560000	2.000000	0.000490	0.490000	374.000000	382.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	V-type proton ATPase subunit G 1 OS=Homo sapiens GN=ATP6V1G1 PE=1 SV=3	VATG1_HUMAN	VATG1_HUMAN	V-type proton ATPase subunit G 1 OS=Homo sapiens GN=ATP6V1G1 PE=1 SV=3	97.400000	0.005760	13739.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.26729.26729.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26729"	ASQSQGIQQLLQAEKR	A[+42]SQSQGIQQLLQAEKR	M	A	99.700000	97.900000	57.900000	84.900000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1872.030000	2.000000	0.006800	3.700000	2.000000	17.000000	2.895000	1.661667	0.632800	4.928550	2.519050	0.509150	NaN	NaN	NaN	3.638306	2.410775	1.100330	5.733372	3.420531	0.761118	NaN	NaN	NaN	4.685839	2.915653	0.140016	0.109155	0.226506	0.176008	0.089978	0.438963	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	V-type proton ATPase subunit G 1 OS=Homo sapiens GN=ATP6V1G1 PE=1 SV=3	VATG1_HUMAN	VATG1_HUMAN	V-type proton ATPase subunit G 1 OS=Homo sapiens GN=ATP6V1G1 PE=1 SV=3	98.900000	0.013400	13739.700000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.23511.23511.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23511"	ASQSQGIQQLLQAEKR	A[+42]SQSQGIQQLLQAEKR	M	A	99.700000	98.800000	57.500000	85.400000	Acetyl (+42), Dimethyl (+28)	1853.990000	2.000000	-0.002500	-1.300000	2.000000	17.000000	2.895000	1.661667	0.632800	4.928550	2.519050	0.509150	NaN	NaN	NaN	3.638306	2.410775	1.100330	5.733372	3.420531	0.761118	NaN	NaN	NaN	4.685839	2.915653	0.140016	0.109155	0.226401	0.175926	0.089943	0.436478	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1	SND1_HUMAN	SND1_HUMAN	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1	100.000000	0.018400	101980.500000	4.000000	9.000000	14.000000	Spectrum43434 scans:14013,	ASSAQSGGSSGGPAVPTVQR	A[+42]SSAQSGGSSGGPAVPTVQR	M	G	99.700000	105.000000	50.200000	86.700000	Acetyl (+42), Label:13C(6) (+6)	1847.900000	2.000000	-0.002900	-1.600000	2.000000	21.000000	1.924567	2.178700	1.587100	1.079700	0.495950	0.478900	NaN	2.305414	NaN	2.418709	3.160896	2.759694	1.256013	0.673433	0.715898	NaN	0.981854	NaN	1.837361	1.605394	0.195084	0.176768	0.315297	0.284766	0.089838	0.029704	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1	SND1_HUMAN	SND1_HUMAN	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1	100.000000	0.018400	101980.500000	4.000000	9.000000	14.000000	Spectrum28599 scans:11155,	ASSAQSGGSSGGPAVPTVQR	A[+42]SSAQSGGSSGGPAVPTVQR	M	G	99.700000	113.000000	49.300000	100.000000	Acetyl (+42)	1841.880000	2.000000	-0.001800	-1.000000	2.000000	21.000000	1.924567	2.178700	1.587100	1.079700	0.495950	0.478900	NaN	2.305414	NaN	2.418709	3.160896	2.759694	1.256013	0.673433	0.715898	NaN	0.981854	NaN	1.837361	1.605394	0.195084	0.176768	0.315150	0.284502	0.089803	0.029592	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1	SND1_HUMAN	SND1_HUMAN	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1	100.000000	0.007510	101980.500000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.13142.13142.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13142"	ASSAQSGGSSGGPAVPTVQR	A[+42]SSAQSGGSSGGPAVPTVQR	M	G	99.700000	96.100000	54.200000	85.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1851.910000	2.000000	0.010000	5.600000	2.000000	21.000000	1.924567	2.178700	1.587100	1.079700	0.495950	0.478900	NaN	2.305414	NaN	2.418709	3.160896	2.759694	1.256013	0.673433	0.715898	NaN	0.981854	NaN	1.837361	1.605394	0.195084	0.176768	0.314857	0.284238	0.089768	0.029537	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	RNA-binding protein 39 (Fragment) OS=Homo sapiens GN=RBM39 PE=4 SV=1	H0Y4X3_HUMAN	H0Y4X3_HUMAN	RNA-binding protein 39 (Fragment) OS=Homo sapiens GN=RBM39 PE=4 SV=1	98.900000	0.002500	36678.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.23765.23765.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23765"	ASSASSFLDSDELER	A[+28]SSASSFLDSDELER	D	T	99.700000	85.400000	49.600000	77.800000	Dimethyl (+28)	1640.750000	2.000000	-0.001100	-0.660000	183.000000	197.000000	0.693167	0.384833	2.631400	0.343700	0.378100	1.126600	NaN	NaN	NaN	0.871141	0.558323	4.575552	0.399826	0.513409	1.684132	NaN	NaN	NaN	0.635483	0.535866	0.226071	0.026664	0.364529	0.042855	0.089734	0.429988	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.055500	17285.000000	4.000000	10.000000	24.000000	Nsco_Tails_biological_replicate_3_fraction6A.11107.11107.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11107"	ASSDIQVK	A[+42]SSDIQVK	M	E	99.000000	79.800000	51.000000	39.300000	Acetyl (+42), Dimethyl (+28)	916.490000	2.000000	-0.001100	-1.200000	2.000000	9.000000	6.492067	4.573367	0.652900	4.209350	2.121700	0.644100	NaN	17.215243	NaN	8.158938	6.635119	1.135281	4.896728	2.880983	0.962852	NaN	7.331808	NaN	6.527833	5.615970	0.155880	0.055574	0.251232	0.089237	0.089699	0.029263	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.069800	17285.000000	7.000000	24.000000	53.000000	Spectrum52581 scans:24538,	ASSDIQVKEL	A[+42]SSDIQVKEL	M	E	99.600000	63.300000	49.600000	49.300000	Acetyl (+42), Dimethyl:2H(4) (+32)	1162.640000	2.000000	-0.000540	-0.460000	2.000000	11.000000	24.910633	10.376967	0.656500	23.511150	10.171350	0.423700	NaN	NaN	NaN	31.306564	15.055083	1.141541	27.350473	13.811325	0.633381	NaN	NaN	NaN	29.328519	14.433204	0.000000	0.000000	0.000000	0.000000	0.089664	0.428395	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.069800	17285.000000	7.000000	24.000000	53.000000	Spectrum52569 scans:24525,	ASSDIQVKEL	A[+42]SSDIQVKEL	M	E	99.700000	67.800000	49.300000	47.700000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1166.630000	2.000000	-0.000610	-0.520000	2.000000	11.000000	24.910633	10.376967	0.656500	23.511150	10.171350	0.423700	NaN	NaN	NaN	31.306564	15.055083	1.141541	27.350473	13.811325	0.633381	NaN	NaN	NaN	29.328519	14.433204	0.000000	0.000000	0.000000	0.000000	0.089560	0.427603	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.055500	17285.000000	4.000000	10.000000	24.000000	Nsco_Tails_biological_replicate_3_fraction6A.24505.24505.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24505"	ASSDIQVKEL	A[+42]SSDIQVKEL	M	E	98.900000	58.600000	53.000000	40.900000	Acetyl (+42), Dimethyl (+28)	1158.610000	2.000000	0.000670	0.580000	2.000000	11.000000	24.910633	10.376967	0.656500	23.511150	10.171350	0.423700	NaN	NaN	NaN	31.306564	15.055083	1.141541	27.350473	13.811325	0.633381	NaN	NaN	NaN	29.328519	14.433204	0.000000	0.000000	0.000000	0.000000	0.089525	0.426814	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.009440	17285.000000	2.000000	3.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.31585.31585.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31585"	ASSDIQVKELEKR	A[+42]SSDIQVKELEKR	M	A	99.700000	87.700000	56.400000	63.300000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	1599.880000	2.000000	-0.004600	-2.900000	2.000000	14.000000	525.632467	223.119500	0.435333	12.680950	7.317200	0.481050	NaN	NaN	NaN	660.591261	323.705629	0.756970	14.751723	9.935773	0.719112	NaN	NaN	NaN	337.671492	166.820701	0.000000	0.002051	0.000000	0.003286	0.089456	0.424465	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.069800	17285.000000	7.000000	24.000000	53.000000	Spectrum44689 scans:15468,	ASSDIQVKELEKR	NaN	M	A	99.500000	62.800000	51.700000	51.500000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1607.930000	2.000000	-0.002200	-1.400000	2.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.069800	17285.000000	7.000000	24.000000	53.000000	Spectrum44817 scans:15610,	ASSDIQVKELEKR	A[+42]SSDIQVKELEKR	M	A	99.700000	77.400000	51.300000	64.700000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1613.950000	2.000000	-0.003900	-2.400000	2.000000	14.000000	525.632467	223.119500	0.435333	12.680950	7.317200	0.481050	NaN	NaN	NaN	660.591261	323.705629	0.756970	14.751723	9.935773	0.719112	NaN	NaN	NaN	337.671492	166.820701	0.000000	0.002051	0.000000	0.003280	0.089387	0.422913	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.069800	17285.000000	7.000000	24.000000	53.000000	Spectrum44966 scans:15777,	ASSDIQVKELEKR	A[+42]SSDIQVKELEKR	M	A	99.700000	82.900000	52.100000	69.200000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1625.920000	2.000000	-0.003500	-2.200000	2.000000	14.000000	525.632467	223.119500	0.435333	12.680950	7.317200	0.481050	NaN	NaN	NaN	660.591261	323.705629	0.756970	14.751723	9.935773	0.719112	NaN	NaN	NaN	337.671492	166.820701	0.000000	0.002051	0.000000	0.003277	0.089352	0.421372	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of 3'(2'),5'-bisphosphate nucleotidase 1 OS=Homo sapiens GN=BPNT1	sp|O95861|BPNT1_HUMAN	BPNT1_HUMAN	3'(2'),5'-bisphosphate nucleotidase 1 OS=Homo sapiens GN=BPNT1 PE=1 SV=1	99.700000	0.002330	33374.700000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.30216.30216.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30216"	ASSNTVLMR	A[+42]SSNTVLMR	M	L	99.700000	84.500000	50.100000	66.800000	Acetyl (+42)	1019.510000	2.000000	0.000740	0.730000	2.000000	10.000000	0.807933	0.545433	0.742733	0.681600	0.855600	1.743500	24.143843	NaN	NaN	1.015374	0.791324	1.291486	0.792904	1.161790	2.606323	16.148107	NaN	NaN	5.985462	0.976557	0.323837	0.119336	0.519276	0.190389	0.006090	0.420606	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1	NC2B_HUMAN	NC2B_HUMAN	Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1	100.000000	0.011900	19425.700000	2.000000	4.000000	9.000000	Spectrum49338 scans:20803,	ASSSGNDDDLTIPR	A[+42]SSSGNDDDLTIPR	M	A	99.700000	99.000000	45.800000	86.600000	Acetyl (+42), Label:13C(6) (+6)	1494.690000	2.000000	-0.001000	-0.670000	2.000000	15.000000	0.748567	0.790933	1.069167	0.847100	0.733250	0.830850	NaN	0.769629	1.389500	0.940765	1.147500	1.859097	0.985430	0.995655	1.242021	NaN	0.327777	0.665852	0.963097	0.823644	0.014759	0.082102	0.023645	0.130925	0.089283	0.028626	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1	NC2B_HUMAN	NC2B_HUMAN	Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1	100.000000	0.011900	19425.700000	2.000000	4.000000	9.000000	Spectrum30070 scans:15562,	ASSSGNDDDLTIPR	A[+42]SSSGNDDDLTIPR	M	A	99.700000	128.000000	44.400000	112.000000	Acetyl (+42)	1488.670000	2.000000	0.000830	0.560000	2.000000	15.000000	0.748567	0.790933	1.069167	0.847100	0.733250	0.830850	NaN	0.769629	1.389500	0.940765	1.147500	1.859097	0.985430	0.995655	1.242021	NaN	0.327777	0.665852	0.963097	0.823644	0.014759	0.082102	0.023623	0.130865	0.089249	0.028522	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1	NC2B_HUMAN	NC2B_HUMAN	Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1	100.000000	0.011900	19425.700000	2.000000	4.000000	9.000000	Spectrum30043 scans:15478,	ASSSGNDDDLTIPR	A[+42]SSSGNDDDLTIPR	M	A	99.700000	127.000000	44.400000	111.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1498.680000	2.000000	-0.002000	-1.300000	2.000000	15.000000	0.748567	0.790933	1.069167	0.847100	0.733250	0.830850	NaN	0.769629	1.389500	0.940765	1.147500	1.859097	0.985430	0.995655	1.242021	NaN	0.327777	0.665852	0.963097	0.823644	0.014759	0.082102	0.023601	0.130744	0.089215	0.028471	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2	sp|Q7Z4H3|HDDC2_HUMAN	HDDC2_HUMAN	HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1	100.000000	0.003950	23372.500000	1.000000	3.000000	3.000000	Spectrum42671 scans:13113,	ASVSSATFSGHGAR	A[+42]SVSSATFSGHGAR	M	S	99.700000	70.300000	46.200000	50.300000	Acetyl (+42)	1375.640000	2.000000	-0.003400	-2.500000	2.000000	15.000000	0.640367	0.200033	0.312967	4.153550	7.596150	2.342400	NaN	NaN	NaN	0.804784	0.290212	0.544195	4.831816	10.314550	3.501607	NaN	NaN	NaN	2.818300	5.302381	0.394930	0.481530	0.630942	0.766472	0.089180	0.416067	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2	sp|Q7Z4H3|HDDC2_HUMAN	HDDC2_HUMAN	HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1	100.000000	0.003950	23372.500000	1.000000	3.000000	3.000000	Spectrum42682 scans:13126,	ASVSSATFSGHGAR	A[+42]SVSSATFSGHGAR	M	S	99.700000	79.800000	46.600000	63.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1385.650000	2.000000	-0.001600	-1.100000	2.000000	15.000000	0.640367	0.200033	0.312967	4.153550	7.596150	2.342400	NaN	NaN	NaN	0.804784	0.290212	0.544195	4.831816	10.314550	3.501607	NaN	NaN	NaN	2.818300	5.302381	0.394930	0.481530	0.630072	0.765068	0.089146	0.413834	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform 2 of HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2	sp|Q7Z4H3|HDDC2_HUMAN	HDDC2_HUMAN	HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1	99.900000	0.006940	23372.500000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction6A.13183.13183.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13183"	ASVSSATFSGHGAR	A[+42]SVSSATFSGHGAR	M	S	99.700000	64.300000	51.100000	45.300000	Acetyl (+42), Label:13C(6) (+6)	1381.670000	2.000000	-0.002600	-1.900000	2.000000	15.000000	0.640367	0.200033	0.312967	4.153550	7.596150	2.342400	NaN	NaN	NaN	0.804784	0.290212	0.544195	4.831816	10.314550	3.501607	NaN	NaN	NaN	2.818300	5.302381	0.394930	0.481530	0.629782	0.764718	0.089111	0.412359	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Arginyl-tRNA--protein transferase 1 (Fragment) OS=Homo sapiens GN=ATE1 PE=2 SV=1	Q5SQQ1_HUMAN	Q5SQQ1_HUMAN	Arginyl-tRNA--protein transferase 1 (Fragment) OS=Homo sapiens GN=ATE1 PE=2 SV=1	99.400000	0.021500	24926.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction5A.15345.15345.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15345"	ASVVEYKGLR	A[+42]SVVEYKGLR	M	A	99.700000	70.000000	53.700000	53.400000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1200.710000	2.000000	0.000210	0.180000	2.000000	11.000000	6.832500	6.511933	3.915533	25.917600	12.741350	0.504200	NaN	NaN	NaN	8.586779	9.447625	6.808439	30.149891	17.301039	0.753719	NaN	NaN	NaN	19.368335	13.374332	0.048312	0.018077	0.077006	0.028682	0.089077	0.411625	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Arginyl-tRNA--protein transferase 1 (Fragment) OS=Homo sapiens GN=ATE1 PE=2 SV=1	Q5SQQ1_HUMAN	Q5SQQ1_HUMAN	Arginyl-tRNA--protein transferase 1 (Fragment) OS=Homo sapiens GN=ATE1 PE=2 SV=1	98.500000	0.008960	24926.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.16681.16681.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16681"	ASVVEYKGLR	A[+42]SVVEYKGLR	M	A	99.300000	59.000000	54.100000	37.700000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1208.690000	2.000000	0.001100	0.910000	2.000000	11.000000	6.832500	6.511933	3.915533	25.917600	12.741350	0.504200	NaN	NaN	NaN	8.586779	9.447625	6.808439	30.149891	17.301039	0.753719	NaN	NaN	NaN	19.368335	13.374332	0.048312	0.018077	0.076935	0.028669	0.089043	0.410894	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	DRG1_HUMAN	DRG1_HUMAN	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	100.000000	0.010000	40525.800000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.31924.31924.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31924"	ATADDLIDVVEGNR	A[+28]TADDLIDVVEGNR	D	V	99.700000	84.600000	53.800000	62.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1524.770000	2.000000	-0.000690	-0.450000	225.000000	238.000000	0.784433	0.894733	1.958933	0.614800	0.191100	0.308750	NaN	NaN	NaN	0.985841	1.298095	3.406248	0.715196	0.259488	0.461544	NaN	NaN	NaN	0.850518	0.778791	0.100448	0.374396	0.159887	0.593492	0.089009	0.410165	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	DRG1_HUMAN	DRG1_HUMAN	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	100.000000	0.010000	40525.800000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.31904.31904.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31904"	ATADDLIDVVEGNR	A[+28]TADDLIDVVEGNR	D	V	99.700000	98.600000	53.900000	64.400000	Dimethyl (+28)	1514.770000	2.000000	0.007600	5.000000	225.000000	238.000000	0.784433	0.894733	1.958933	0.614800	0.191100	0.308750	NaN	NaN	NaN	0.985841	1.298095	3.406248	0.715196	0.259488	0.461544	NaN	NaN	NaN	0.850518	0.778791	0.100448	0.374396	0.159595	0.592950	0.088940	0.409440	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction4A (Nsco_Tails_biological_replicate_3_fraction4A_127088)	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	E9PBS1_HUMAN	E9PBS1_HUMAN	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	100.000000	0.601000	45634.200000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate_3_fraction4A.16864.16864.2 File:"Nsco_Tails_biological_replicate_3_fraction4A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16864"	ATAEVLNIGK	A[+42]TAEVLNIGK	M	K	99.700000	72.400000	53.000000	52.900000	Acetyl (+42), Dimethyl (+28)	1084.610000	2.000000	0.000480	0.440000	2.000000	11.000000	2.500267	77.556967	22.818400	13.721300	7.739600	0.566700	NaN	NaN	8.662257	3.142223	112.520988	39.677274	15.961960	10.509335	0.847149	NaN	NaN	4.150976	9.552091	61.515162	0.306179	0.000000	0.486243	0.000000	0.088906	0.408716	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	E9PBS1_HUMAN	E9PBS1_HUMAN	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	100.000000	0.035800	45634.200000	3.000000	6.000000	8.000000	Nsco_Tails_biological_replicate2_apoptosis.23165.23165.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23165"	ATAEVLNIGK	A[+42]TAEVLNIGK	M	K	99.700000	80.100000	53.100000	63.900000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1092.630000	2.000000	-0.000039	-0.035000	2.000000	11.000000	2.500267	77.556967	22.818400	13.721300	7.739600	0.566700	NaN	NaN	8.662257	3.142223	112.520988	39.677274	15.961960	10.509335	0.847149	NaN	NaN	4.150976	9.552091	61.515162	0.306179	0.000000	0.485799	0.000000	0.088872	0.407995	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	E9PBS1_HUMAN	E9PBS1_HUMAN	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	100.000000	0.023700	45634.200000	4.000000	7.000000	18.000000	Spectrum23123 scans:13914,	ATAEVLNIGKK	A[+42]TAEVLNIGKK	M	L	99.700000	69.700000	47.500000	59.300000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1248.790000	2.000000	-0.001100	-0.920000	2.000000	12.000000	2.832700	NaN	NaN	50.515750	29.532700	0.578000	NaN	NaN	NaN	3.560010	NaN	NaN	58.764868	40.101433	0.864041	NaN	NaN	NaN	31.162439	40.101433	0.282269	NaN	0.447657	NaN	0.088838	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	E9PBS1_HUMAN	E9PBS1_HUMAN	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	100.000000	0.023700	45634.200000	4.000000	7.000000	18.000000	Spectrum23124 scans:13924,	ATAEVLNIGKK	A[+42]TAEVLNIGKK	M	L	99.700000	71.400000	48.800000	57.800000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1256.770000	2.000000	-0.000200	-0.160000	2.000000	12.000000	2.832700	NaN	NaN	50.515750	29.532700	0.578000	NaN	NaN	NaN	3.560010	NaN	NaN	58.764868	40.101433	0.864041	NaN	NaN	NaN	31.162439	40.101433	0.282269	NaN	0.447453	NaN	0.088804	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	E9PBS1_HUMAN	E9PBS1_HUMAN	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	100.000000	0.030100	45634.200000	4.000000	9.000000	12.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.21629.21629.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21629"	ATAEVLNIGKK	A[+42]TAEVLNIGKK	M	L	99.700000	78.700000	54.100000	65.200000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	1240.740000	2.000000	-0.001500	-1.200000	2.000000	12.000000	2.832700	NaN	NaN	50.515750	29.532700	0.578000	NaN	NaN	NaN	3.560010	NaN	NaN	58.764868	40.101433	0.864041	NaN	NaN	NaN	31.162439	40.101433	0.282269	NaN	0.447044	NaN	0.088770	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	E9PBS1_HUMAN	E9PBS1_HUMAN	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	100.000000	0.023700	45634.200000	4.000000	7.000000	18.000000	Spectrum23306 scans:22224,	ATAEVLNIGKKLY	A[+42]TAEVLNIGKKLY	M	E	99.200000	55.300000	49.600000	12.700000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1524.940000	2.000000	-0.000720	-0.470000	2.000000	14.000000	235.873933	81.632933	0.318300	1502.978300	669.861650	0.473200	NaN	NaN	NaN	296.435759	118.434471	0.553469	1748.411575	909.581981	0.707377	NaN	NaN	NaN	1022.423667	514.008226	0.000000	0.000000	0.000000	0.000000	0.088735	0.403723	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	E9PBS1_HUMAN	E9PBS1_HUMAN	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	100.000000	0.030100	45634.200000	4.000000	9.000000	12.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.35746.35746.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35746"	ATAEVLNIGKKLY	A[+42]TAEVLNIGKKLY	M	E	99.700000	69.900000	55.500000	51.400000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1532.910000	2.000000	-0.000500	-0.330000	2.000000	14.000000	235.873933	81.632933	0.318300	1502.978300	669.861650	0.473200	NaN	NaN	NaN	296.435759	118.434471	0.553469	1748.411575	909.581981	0.707377	NaN	NaN	NaN	1022.423667	514.008226	0.000000	0.000000	0.000000	0.000000	0.088701	0.403020	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	E9PBS1_HUMAN	E9PBS1_HUMAN	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	100.000000	0.030100	45634.200000	4.000000	9.000000	12.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.35772.35772.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35772"	ATAEVLNIGKKLY	A[+42]TAEVLNIGKKLY	M	E	99.700000	82.900000	55.900000	55.900000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	1516.890000	2.000000	-0.001100	-0.750000	2.000000	14.000000	235.873933	81.632933	0.318300	1502.978300	669.861650	0.473200	NaN	NaN	NaN	296.435759	118.434471	0.553469	1748.411575	909.581981	0.707377	NaN	NaN	NaN	1022.423667	514.008226	0.000000	0.000000	0.000000	0.000000	0.088667	0.402319	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	E9PBS1_HUMAN	E9PBS1_HUMAN	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	100.000000	0.023700	45634.200000	4.000000	7.000000	18.000000	Spectrum23312 scans:22498,	ATAEVLNIGKKLYEGK	A[+42]TAEVLNIGKKLYEGK	M	T	99.700000	46.100000	50.300000	38.600000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1871.150000	3.000000	-0.000720	-0.380000	2.000000	17.000000	29.594033	14.840000	0.379867	1066.938000	562.583100	0.526900	NaN	NaN	NaN	37.192451	21.530129	0.660523	1241.166788	763.912146	0.787652	NaN	NaN	NaN	639.179619	392.721137	0.000000	0.000000	0.000000	0.000000	0.088633	0.401620	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	E9PBS1_HUMAN	E9PBS1_HUMAN	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	100.000000	0.023700	45634.200000	4.000000	7.000000	18.000000	Spectrum23313 scans:22499,	ATAEVLNIGKKLYEGK	A[+42]TAEVLNIGKKLYEGK	M	T	99.700000	57.300000	51.900000	49.300000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1883.120000	3.000000	-0.000780	-0.410000	2.000000	17.000000	29.594033	14.840000	0.379867	1066.938000	562.583100	0.526900	NaN	NaN	NaN	37.192451	21.530129	0.660523	1241.166788	763.912146	0.787652	NaN	NaN	NaN	639.179619	392.721137	0.000000	0.000000	0.000000	0.000000	0.088600	0.400924	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Lamin-B1 OS=Homo sapiens GN=LMNB1 PE=1 SV=2	LMNB1_HUMAN	LMNB1_HUMAN	Lamin-B1 OS=Homo sapiens GN=LMNB1 PE=1 SV=2	100.000000	0.005270	66391.600000	1.000000	1.000000	4.000000	Spectrum22865 scans:6869,	ATATPVPPR	A[+42]TATPVPPR	M	M	99.300000	60.900000	48.400000	39.100000	Acetyl (+42), Label:13C(6) (+6)	956.540000	2.000000	0.000520	0.550000	2.000000	10.000000	0.935800	2.208533	2.305667	0.802350	0.652650	0.815700	1.439929	1.493943	3.650243	1.176071	3.204178	4.009158	0.933372	0.886211	1.219374	0.963066	0.636256	1.749206	1.024170	1.575548	0.005523	0.193772	0.008700	0.304386	0.006039	0.027288	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Lamin-B1 OS=Homo sapiens GN=LMNB1 PE=1 SV=2	LMNB1_HUMAN	LMNB1_HUMAN	Lamin-B1 OS=Homo sapiens GN=LMNB1 PE=1 SV=2	100.000000	0.002500	66391.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.9778.9778.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9778"	ATATPVPPR	A[+42]TATPVPPR	M	M	99.700000	56.800000	51.700000	36.300000	Acetyl (+42)	950.520000	2.000000	-0.000120	-0.120000	2.000000	10.000000	0.935800	2.208533	2.305667	0.802350	0.652650	0.815700	1.439929	1.493943	3.650243	1.176071	3.204178	4.009158	0.933372	0.886211	1.219374	0.963066	0.636256	1.749206	1.024170	1.575548	0.005523	0.193772	0.008696	0.304248	0.006036	0.027194	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 4 of E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens GN=NEDD4	sp|P46934-4|NEDD4_HUMAN	NEDD4_HUMAN	Isoform 4 of E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens GN=NEDD4	98.900000	0.010000	104201.600000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.48994.48994.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=48994"	ATCAVEVFGLLEDEENSR	A[+42]TC[+57]AVEVFGLLEDEENSR	M	I	99.700000	91.600000	50.200000	5.230000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2089.950000	2.000000	-0.004800	-2.300000	2.000000	19.000000	2.088300	4.936800	2.644200	0.868400	0.147050	0.168350	NaN	NaN	NaN	2.624482	7.162395	4.597809	1.010208	0.199674	0.251663	NaN	NaN	NaN	1.817345	3.681034	0.266083	0.482257	0.418733	0.756866	0.088498	0.394767	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 4 of E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens GN=NEDD4	sp|P46934-4|NEDD4_HUMAN	NEDD4_HUMAN	Isoform 4 of E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens GN=NEDD4	98.900000	0.010000	104201.600000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.48995.48995.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=48995"	ATCAVEVFGLLEDEENSR	A[+42]TC[+57]AVEVFGLLEDEENSR	M	I	99.700000	99.100000	50.500000	2.040000	Acetyl (+42), Carbamidomethyl (+57)	2079.950000	2.000000	0.003400	1.700000	2.000000	19.000000	2.088300	4.936800	2.644200	0.868400	0.147050	0.168350	NaN	NaN	NaN	2.624482	7.162395	4.597809	1.010208	0.199674	0.251663	NaN	NaN	NaN	1.817345	3.681034	0.266083	0.482257	0.418543	0.756182	0.088464	0.393424	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	EFHD2_HUMAN	EFHD2_HUMAN	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	100.000000	0.014500	26680.400000	5.000000	8.000000	11.000000	Spectrum48752 scans:20118,	ATDELATKLSR	A[+42]TDELATKLSR	M	R	99.700000	76.800000	50.500000	53.000000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1283.730000	2.000000	-0.000910	-0.710000	2.000000	12.000000	182.688333	81.590133	0.438900	23.898050	27.381850	1.168450	NaN	NaN	3.476343	229.594487	118.372376	0.763172	27.800553	37.180868	1.746693	NaN	NaN	1.665873	128.697520	77.776622	0.000000	0.000000	0.000000	0.000000	0.088430	0.392756	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	EFHD2_HUMAN	EFHD2_HUMAN	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	100.000000	0.014500	26680.400000	5.000000	8.000000	11.000000	Spectrum48751 scans:20117,	ATDELATKLSR	A[+42]TDELATKLSR	M	R	99.700000	80.700000	50.300000	62.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1291.710000	2.000000	-0.001400	-1.100000	2.000000	12.000000	182.688333	81.590133	0.438900	23.898050	27.381850	1.168450	NaN	NaN	3.476343	229.594487	118.372376	0.763172	27.800553	37.180868	1.746693	NaN	NaN	1.665873	128.697520	77.776622	0.000000	0.000000	0.000000	0.000000	0.088396	0.392090	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	EFHD2_HUMAN	EFHD2_HUMAN	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	100.000000	0.016200	26680.400000	2.000000	5.000000	7.000000	Nsco_Tails_biological_replicate_3_fraction6A.20128.20128.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20128"	ATDELATKLSR	A[+42]TDELATKLSR	M	R	99.700000	71.200000	54.100000	52.700000	Acetyl (+42), Dimethyl (+28)	1273.690000	2.000000	-0.001500	-1.200000	2.000000	12.000000	182.688333	81.590133	0.438900	23.898050	27.381850	1.168450	NaN	NaN	3.476343	229.594487	118.372376	0.763172	27.800553	37.180868	1.746693	NaN	NaN	1.665873	128.697520	77.776622	0.000000	0.000000	0.000000	0.000000	0.088363	0.391427	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Major vault protein OS=Homo sapiens GN=MVP PE=1 SV=4	MVP_HUMAN	MVP_HUMAN	Major vault protein OS=Homo sapiens GN=MVP PE=1 SV=4	95.700000	0.002630	99308.000000	1.000000	2.000000	2.000000	Spectrum11695 scans:41894,	ATEEFIIR	A[+42]TEEFIIR	M	I	99.000000	70.300000	47.900000	31.000000	Acetyl (+42)	1019.530000	2.000000	0.000990	0.970000	2.000000	9.000000	7.037933	124.830800	14.564467	0.605400	0.407200	0.673450	NaN	NaN	NaN	8.844958	181.106683	25.325103	0.704261	0.552923	1.006727	NaN	NaN	NaN	4.774609	90.829803	0.449417	0.464836	0.705646	0.726895	0.088329	0.390766	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Major vault protein OS=Homo sapiens GN=MVP PE=1 SV=4	MVP_HUMAN	MVP_HUMAN	Major vault protein OS=Homo sapiens GN=MVP PE=1 SV=4	96.800000	0.008960	99308.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.24865.24865.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24865"	ATEEFIIR	A[+42]TEEFIIR	M	I	99.000000	65.000000	51.700000	32.600000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1029.540000	2.000000	0.000890	0.860000	2.000000	9.000000	7.037933	124.830800	14.564467	0.605400	0.407200	0.673450	NaN	NaN	NaN	8.844958	181.106683	25.325103	0.704261	0.552923	1.006727	NaN	NaN	NaN	4.774609	90.829803	0.449417	0.464836	0.705327	0.726567	0.088295	0.390107	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	PDIA1_HUMAN	PDIA1_HUMAN	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	100.000000	0.011500	57100.100000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.18027.18027.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18027"	ATEESDLAQQYGVR	A[+28]TEESDLAQQYGVR	D	G	99.700000	83.600000	52.000000	70.500000	Dimethyl (+28)	1593.770000	2.000000	0.001900	1.200000	84.000000	97.000000	0.319800	0.342633	1.075933	0.819600	0.762700	0.935950	NaN	NaN	NaN	0.401910	0.497098	1.870863	0.953439	1.035644	1.399133	NaN	NaN	NaN	0.677675	0.766371	0.246031	0.215105	0.385778	0.336072	0.088261	0.386199	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	PDIA1_HUMAN	PDIA1_HUMAN	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	100.000000	0.022400	57100.100000	4.000000	9.000000	17.000000	Spectrum29688 scans:14637,	ATEESDLAQQYGVR	A[+28]TEESDLAQQYGVR	D	G	99.700000	78.200000	49.100000	60.500000	Dimethyl (+28), Label:13C(6) (+6)	1599.780000	2.000000	-0.001100	-0.710000	84.000000	97.000000	0.319800	0.342633	1.075933	0.819600	0.762700	0.935950	NaN	NaN	NaN	0.401910	0.497098	1.870863	0.953439	1.035644	1.399133	NaN	NaN	NaN	0.677675	0.766371	0.246031	0.215105	0.385429	0.335921	0.088228	0.385556	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	PDIA1_HUMAN	PDIA1_HUMAN	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	100.000000	0.031300	57100.100000	3.000000	7.000000	7.000000	Nsco_Tails_biological_replicate2_apoptosis.15951.15951.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15951"	ATEESDLAQQYGVR	A[+28]TEESDLAQQYGVR	D	G	99.700000	84.700000	51.800000	74.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1603.770000	2.000000	-0.006400	-4.000000	84.000000	97.000000	0.319800	0.342633	1.075933	0.819600	0.762700	0.935950	NaN	NaN	NaN	0.401910	0.497098	1.870863	0.953439	1.035644	1.399133	NaN	NaN	NaN	0.677675	0.766371	0.246031	0.215105	0.385082	0.335468	0.088194	0.384914	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Huntingtin-interacting protein K OS=Homo sapiens GN=HYPK PE=1 SV=2	sp|Q9NX55|HYPK_HUMAN	HYPK_HUMAN	Huntingtin-interacting protein K OS=Homo sapiens GN=HYPK PE=1 SV=2	95.800000	0.004720	14647.700000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.49062.49062.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=49062"	ATEGDVELELETETSGPERPPEKPR	A[+42]TEGDVELELETETSGPERPPEKPR	M	K	99.400000	70.000000	57.400000	70.000000	Acetyl (+42), Dimethyl (+28)	2835.370000	3.000000	-0.007900	-2.800000	10.000000	34.000000	20.350000	15.381100	0.500033	NaN	NaN	0.750150	NaN	NaN	NaN	25.574965	22.315166	0.869472	NaN	NaN	1.121384	NaN	NaN	NaN	25.574965	22.315166	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Huntingtin-interacting protein K OS=Homo sapiens GN=HYPK PE=1 SV=2	sp|Q9NX55|HYPK_HUMAN	HYPK_HUMAN	Huntingtin-interacting protein K OS=Homo sapiens GN=HYPK PE=1 SV=2	100.000000	0.005270	14647.700000	1.000000	2.000000	4.000000	Spectrum31231 scans:19922,	ATEGDVELELETETSGPERPPEKPR	A[+42]TEGDVELELETETSGPERPPEKPR	M	K	99.700000	73.800000	53.600000	67.300000	Acetyl (+42), Label:13C(6)15N(4) (+10), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2863.400000	3.000000	-0.006200	-2.200000	10.000000	34.000000	20.350000	15.381100	0.500033	NaN	NaN	0.750150	NaN	NaN	NaN	25.574965	22.315166	0.869472	NaN	NaN	1.121384	NaN	NaN	NaN	25.574965	22.315166	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Huntingtin-interacting protein K OS=Homo sapiens GN=HYPK PE=1 SV=2	sp|Q9NX55|HYPK_HUMAN	HYPK_HUMAN	Huntingtin-interacting protein K OS=Homo sapiens GN=HYPK PE=1 SV=2	100.000000	0.005270	14647.700000	1.000000	2.000000	4.000000	Spectrum31245 scans:20000,	ATEGDVELELETETSGPERPPEKPR	A[+42]TEGDVELELETETSGPERPPEKPR	M	K	99.700000	68.900000	55.300000	60.700000	Acetyl (+42), Label:13C(6) (+6), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2851.440000	3.000000	0.001600	0.570000	10.000000	34.000000	20.350000	15.381100	0.500033	NaN	NaN	0.750150	NaN	NaN	NaN	25.574965	22.315166	0.869472	NaN	NaN	1.121384	NaN	NaN	NaN	25.574965	22.315166	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 6 of Splicing factor 1 OS=Homo sapiens GN=SF1	sp|Q15637-6|SF01_HUMAN	SF01_HUMAN	Isoform 6 of Splicing factor 1 OS=Homo sapiens GN=SF1	99.900000	0.009220	61872.000000	1.000000	2.000000	7.000000	Spectrum29297 scans:13232,	ATGANATPLDFPSKKR	A[+42]TGANATPLDFPSKKR	M	K	99.700000	52.600000	52.400000	44.700000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1785.030000	3.000000	-0.000820	-0.460000	2.000000	17.000000	3.301400	2.153433	0.649233	6.638150	2.411850	0.348000	NaN	NaN	NaN	4.149051	3.124238	1.128905	7.722146	3.274968	0.520218	NaN	NaN	NaN	5.935599	3.199603	0.186124	0.014992	0.290793	0.023329	0.088060	0.380482	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 6 of Splicing factor 1 OS=Homo sapiens GN=SF1	sp|Q15637-6|SF01_HUMAN	SF01_HUMAN	Isoform 6 of Splicing factor 1 OS=Homo sapiens GN=SF1	99.900000	0.009220	61872.000000	1.000000	2.000000	7.000000	Spectrum29307 scans:13263,	ATGANATPLDFPSKKR	A[+42]TGANATPLDFPSKKR	M	K	99.700000	62.700000	52.900000	49.400000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1797.000000	3.000000	-0.001000	-0.560000	2.000000	17.000000	3.301400	2.153433	0.649233	6.638150	2.411850	0.348000	NaN	NaN	NaN	4.149051	3.124238	1.128905	7.722146	3.274968	0.520218	NaN	NaN	NaN	5.935599	3.199603	0.186124	0.014992	0.290662	0.023287	0.087993	0.379858	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Zinc finger CCHC domain-containing protein 3 OS=Homo sapiens GN=ZCCHC3 PE=1 SV=1	ZCHC3_HUMAN	ZCHC3_HUMAN	Zinc finger CCHC domain-containing protein 3 OS=Homo sapiens GN=ZCCHC3 PE=1 SV=1	99.400000	0.002630	43600.600000	1.000000	2.000000	2.000000	Spectrum459 scans:9783,	ATGGGAEEER	A[+42]TGGGAEEER	M	K	99.700000	54.800000	40.600000	30.600000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1027.440000	2.000000	-0.000400	-0.390000	2.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1	sp|Q08257|QOR_HUMAN	QOR_HUMAN	Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1	100.000000	0.005270	35189.300000	3.000000	3.000000	4.000000	Spectrum38468 scans:8263,	ATGQKLMR	A[+42]TGQKLMR	M	A	99.000000	53.900000	48.300000	25.800000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	983.580000	2.000000	0.000190	0.200000	2.000000	9.000000	14.122533	7.767833	0.550900	13.486550	9.476000	0.722050	NaN	NaN	NaN	17.748565	11.269707	0.957920	15.688876	12.867133	1.079378	NaN	NaN	NaN	16.718721	12.068420	0.000000	0.000000	0.000000	0.000000	0.087893	0.378614	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1	sp|Q08257|QOR_HUMAN	QOR_HUMAN	Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1	94.800000	0.004480	35189.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.7484.7484.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7484"	ATGQKLMR	A[+42]TGQKLMR	M	A	98.700000	51.600000	52.200000	32.100000	Acetyl (+42), Dimethyl (+28)	973.540000	2.000000	-0.000260	-0.270000	2.000000	9.000000	14.122533	7.767833	0.550900	13.486550	9.476000	0.722050	NaN	NaN	NaN	17.748565	11.269707	0.957920	15.688876	12.867133	1.079378	NaN	NaN	NaN	16.718721	12.068420	0.000000	0.000000	0.000000	0.000000	0.087859	0.377379	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Keratin, type I cytoskeletal 23 OS=Homo sapiens GN=KRT23 PE=1 SV=2	K1C23_HUMAN	K1C23_HUMAN	Keratin, type I cytoskeletal 23 OS=Homo sapiens GN=KRT23 PE=1 SV=2	98.800000	0.005270	48113.900000	1.000000	1.000000	4.000000	Spectrum22590 scans:2936,	ATMQNLNDR	NaN	K	L	99.700000	70.900000	45.000000	0.000000	Dimethyl (+28), Oxidation (+16)	1105.520000	2.000000	-0.000160	-0.140000	74.000000	82.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform D of Protein SON OS=Homo sapiens GN=SON	sp|P18583|SON_HUMAN	SON_HUMAN	Protein SON OS=Homo sapiens GN=SON PE=1 SV=4	99.600000	0.001320	263811.400000	1.000000	1.000000	1.000000	Spectrum13172 scans:48925,	ATNIEQIFR	A[+42]TNIEQIFR	M	S	99.100000	58.100000	48.600000	36.900000	Acetyl (+42)	1132.590000	2.000000	0.000610	0.540000	2.000000	10.000000	0.177167	0.439500	4.008900	0.687300	0.286250	0.416450	NaN	NaN	NaN	0.222655	0.637634	6.970788	0.799535	0.388689	0.622543	NaN	NaN	NaN	0.511095	0.513162	0.327094	0.151493	0.508977	0.234260	0.087759	0.374326	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform D of Protein SON OS=Homo sapiens GN=SON	sp|P18583|SON_HUMAN	SON_HUMAN	Protein SON OS=Homo sapiens GN=SON PE=1 SV=4	98.100000	0.005010	263811.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.36632.36632.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36632"	ATNIEQIFR	A[+42]TNIEQIFR	M	S	99.200000	50.800000	52.500000	31.700000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1142.600000	2.000000	0.000220	0.190000	2.000000	10.000000	0.177167	0.439500	4.008900	0.687300	0.286250	0.416450	NaN	NaN	NaN	0.222655	0.637634	6.970788	0.799535	0.388689	0.622543	NaN	NaN	NaN	0.511095	0.513162	0.327094	0.151493	0.508065	0.234156	0.087693	0.371322	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Short of Cold shock domain-containing protein E1 OS=Homo sapiens GN=CSDE1	sp|O75534-2|CSDE1_HUMAN	CSDE1_HUMAN	Isoform Short of Cold shock domain-containing protein E1 OS=Homo sapiens GN=CSDE1	100.000000	0.003950	85729.800000	3.000000	3.000000	3.000000	Spectrum12494 scans:45799,	ATNIEVLSNTF	A[+28]TNIEVLSNTF	R	Q	99.200000	54.700000	49.200000	36.300000	Dimethyl (+28)	1235.640000	2.000000	-0.000520	-0.420000	300.000000	310.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha OS=Homo sapiens GN=PIP4K2A PE=1 SV=2	PI42A_HUMAN	PI42A_HUMAN	Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha OS=Homo sapiens GN=PIP4K2A PE=1 SV=2	99.400000	0.021500	46207.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction5A.16337.16337.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16337"	ATPGNLGSSVLASKTK	A[+42]TPGNLGSSVLASKTK	M	T	99.600000	68.600000	56.600000	61.600000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	1627.910000	2.000000	-0.009200	-5.600000	2.000000	17.000000	NaN	NaN	0.499233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.868081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha OS=Homo sapiens GN=PIP4K2A PE=1 SV=2	PI42A_HUMAN	PI42A_HUMAN	Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha OS=Homo sapiens GN=PIP4K2A PE=1 SV=2	99.400000	0.021500	46207.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction5A.16322.16322.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16322"	ATPGNLGSSVLASKTK	A[+42]TPGNLGSSVLASKTK	M	T	99.700000	78.900000	56.700000	76.300000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1643.950000	2.000000	0.002400	1.500000	2.000000	17.000000	NaN	NaN	0.499233	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.868081	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	HSP74_HUMAN	HSP74_HUMAN	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	100.000000	0.011500	94313.900000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.19069.19069.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19069"	ATQIAGLNCLR	A[+28]TQIAGLNC[+57]LR	D	L	99.700000	72.800000	53.900000	40.200000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1253.680000	2.000000	-0.002200	-1.800000	159.000000	169.000000	0.709100	0.628133	1.191167	0.667650	0.468600	0.701900	NaN	NaN	NaN	0.891165	0.911307	2.071234	0.776676	0.636296	1.049256	NaN	NaN	NaN	0.833920	0.773801	0.043632	0.111959	0.067591	0.172436	0.087560	0.367196	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	HSP74_HUMAN	HSP74_HUMAN	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	100.000000	0.007510	94313.900000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.19002.19002.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19002"	ATQIAGLNCLR	A[+28]TQIAGLNC[+57]LR	D	L	99.700000	61.100000	53.800000	27.900000	Dimethyl (+28), Carbamidomethyl (+57)	1243.670000	2.000000	-0.000500	-0.400000	159.000000	169.000000	0.709100	0.628133	1.191167	0.667650	0.468600	0.701900	NaN	NaN	NaN	0.891165	0.911307	2.071234	0.776676	0.636296	1.049256	NaN	NaN	NaN	0.833920	0.773801	0.043632	0.111959	0.067561	0.172283	0.087527	0.361458	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2	sp|Q6PKG0|LARP1_HUMAN	LARP1_HUMAN	La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2	100.000000	0.010000	123494.600000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40508.40508.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40508"	ATQVEPLLPGGATLLQAEEHGGLVR	A[+42]TQVEPLLPGGATLLQAEEHGGLVR	M	K	99.700000	94.200000	60.800000	83.400000	Acetyl (+42)	2597.380000	3.000000	-0.001100	-0.420000	2.000000	26.000000	0.803600	0.367133	0.388367	0.807900	0.154550	0.190250	NaN	NaN	NaN	1.009928	0.532643	0.675303	0.939828	0.209858	0.284401	NaN	NaN	NaN	0.974878	0.371251	0.022879	0.261065	0.035410	0.401194	0.087494	0.360894	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2	sp|Q6PKG0|LARP1_HUMAN	LARP1_HUMAN	La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2	100.000000	0.010000	123494.600000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40408.40408.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40408"	ATQVEPLLPGGATLLQAEEHGGLVR	A[+42]TQVEPLLPGGATLLQAEEHGGLVR	M	K	99.700000	83.000000	60.900000	79.100000	Acetyl (+42), Label:13C(6)15N(4) (+10)	2607.390000	2.000000	0.001200	0.460000	2.000000	26.000000	0.803600	0.367133	0.388367	0.807900	0.154550	0.190250	NaN	NaN	NaN	1.009928	0.532643	0.675303	0.939828	0.209858	0.284401	NaN	NaN	NaN	0.974878	0.371251	0.022879	0.261065	0.035378	0.401017	0.087461	0.360332	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 1 of Ena/VASP-like protein OS=Homo sapiens GN=EVL	sp|Q9UI08-2|EVL_HUMAN	EVL_HUMAN	Isoform 1 of Ena/VASP-like protein OS=Homo sapiens GN=EVL	99.900000	0.002360	44773.800000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.22917.22917.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22917"	ATSEQSICQAR	A[+42]TSEQSIC[+57]QAR	M	A	99.600000	62.600000	49.100000	36.500000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6) (+6)	1297.610000	2.000000	0.002600	2.000000	2.000000	12.000000	0.724567	0.424433	0.603867	0.978600	0.189400	0.193550	0.600471	0.574757	5.580100	0.910603	0.615775	1.050020	1.138403	0.257180	0.289334	0.401613	0.244784	2.673998	0.816873	0.372580	0.064306	0.092115	0.099394	0.141433	0.005961	0.024416	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 1 of Ena/VASP-like protein OS=Homo sapiens GN=EVL	sp|Q9UI08-2|EVL_HUMAN	EVL_HUMAN	Isoform 1 of Ena/VASP-like protein OS=Homo sapiens GN=EVL	100.000000	0.013400	44773.800000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.9336.9336.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9336"	ATSEQSICQAR	A[+42]TSEQSIC[+57]QAR	M	A	99.700000	61.900000	47.800000	32.300000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1301.590000	2.000000	0.000120	0.091000	2.000000	12.000000	0.724567	0.424433	0.603867	0.978600	0.189400	0.193550	0.600471	0.574757	5.580100	0.910603	0.615775	1.050020	1.138403	0.257180	0.289334	0.401613	0.244784	2.673998	0.816873	0.372580	0.064306	0.092115	0.099262	0.141370	0.005959	0.024378	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 1 of Ena/VASP-like protein OS=Homo sapiens GN=EVL	sp|Q9UI08-2|EVL_HUMAN	EVL_HUMAN	Isoform 1 of Ena/VASP-like protein OS=Homo sapiens GN=EVL	100.000000	0.013400	44773.800000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.9337.9337.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9337"	ATSEQSICQAR	A[+42]TSEQSIC[+57]QAR	M	A	99.700000	78.900000	47.500000	46.500000	Acetyl (+42), Carbamidomethyl (+57)	1291.580000	2.000000	-0.000450	-0.350000	2.000000	12.000000	0.724567	0.424433	0.603867	0.978600	0.189400	0.193550	0.600471	0.574757	5.580100	0.910603	0.615775	1.050020	1.138403	0.257180	0.289334	0.401613	0.244784	2.673998	0.816873	0.372580	0.064306	0.092115	0.099217	0.141245	0.005956	0.024303	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4	IF4A3_HUMAN	IF4A3_HUMAN	Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4	98.900000	0.005760	46854.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.6141.6141.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6141"	ATTATMATSGSAR	A[+42]TTATMATSGSAR	M	K	99.700000	71.500000	47.400000	62.500000	Acetyl (+42), Oxidation (+16)	1282.580000	2.000000	-0.002500	-2.000000	2.000000	14.000000	14.350733	0.628933	0.471567	0.870150	0.438300	0.525250	7.372671	14.510529	2.482257	18.035357	0.912467	0.819973	1.012244	0.595152	0.785186	4.931058	6.179896	1.189504	7.992886	2.562505	0.177809	0.292708	0.274221	0.448629	0.005952	0.024266	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4	IF4A3_HUMAN	IF4A3_HUMAN	Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4	99.000000	0.015000	46854.400000	1.000000	5.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.9570.9570.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9570"	ATTATMATSGSAR	A[+42]TTATMATSGSAR	M	K	99.600000	52.700000	49.200000	44.100000	Acetyl (+42), Oxidation (+16), Label:13C(6) (+6)	1288.600000	2.000000	-0.000490	-0.380000	2.000000	14.000000	14.350733	0.628933	0.471567	0.870150	0.438300	0.525250	7.372671	14.510529	2.482257	18.035357	0.912467	0.819973	1.012244	0.595152	0.785186	4.931058	6.179896	1.189504	7.992886	2.562505	0.177809	0.292708	0.273855	0.448431	0.005947	0.024228	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4	IF4A3_HUMAN	IF4A3_HUMAN	Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4	99.000000	0.015000	46854.400000	1.000000	5.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.9634.9634.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9634"	ATTATMATSGSAR	A[+42]TTATMATSGSAR	M	K	99.700000	62.300000	48.900000	53.800000	Acetyl (+42)	1266.590000	2.000000	0.002100	1.600000	2.000000	14.000000	14.350733	0.628933	0.471567	0.870150	0.438300	0.525250	7.372671	14.510529	2.482257	18.035357	0.912467	0.819973	1.012244	0.595152	0.785186	4.931058	6.179896	1.189504	7.992886	2.562505	0.177809	0.292708	0.273613	0.448233	0.005945	0.024007	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4	IF4A3_HUMAN	IF4A3_HUMAN	Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4	99.000000	0.015000	46854.400000	1.000000	5.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.9576.9576.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9576"	ATTATMATSGSAR	A[+42]TTATMATSGSAR	M	K	99.700000	59.800000	48.000000	54.500000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10)	1292.590000	2.000000	-0.000015	-0.012000	2.000000	14.000000	14.350733	0.628933	0.471567	0.870150	0.438300	0.525250	7.372671	14.510529	2.482257	18.035357	0.912467	0.819973	1.012244	0.595152	0.785186	4.931058	6.179896	1.189504	7.992886	2.562505	0.177809	0.292708	0.273249	0.448035	0.005941	0.023971	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4	IF4A3_HUMAN	IF4A3_HUMAN	Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4	98.900000	0.013400	46854.400000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.9020.9020.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9020"	ATTATMATSGSAR	A[+42]TTATMATSGSAR	M	K	99.700000	73.100000	48.800000	60.600000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1276.590000	2.000000	-0.004400	-3.400000	2.000000	14.000000	14.350733	0.628933	0.471567	0.870150	0.438300	0.525250	7.372671	14.510529	2.482257	18.035357	0.912467	0.819973	1.012244	0.595152	0.785186	4.931058	6.179896	1.189504	7.992886	2.562505	0.177809	0.292708	0.273128	0.447443	0.005939	0.023934	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Dipeptidyl peptidase 9 OS=Homo sapiens GN=DPP9	sp|Q86TI2|DPP9_HUMAN	DPP9_HUMAN	Dipeptidyl peptidase 9 OS=Homo sapiens GN=DPP9 PE=1 SV=3	100.000000	0.002630	98246.200000	1.000000	1.000000	2.000000	Spectrum25347 scans:4732,	ATTGTPTADR	A[+42]TTGTPTADR	M	G	99.700000	65.400000	45.200000	49.600000	Acetyl (+42)	1031.490000	2.000000	0.000091	0.088000	2.000000	11.000000	1.023933	5.781367	2.134267	0.570650	0.414900	0.728950	NaN	NaN	NaN	1.286833	8.387707	3.711123	0.663836	0.563378	1.089693	NaN	NaN	NaN	0.975335	4.475543	0.196803	0.457304	0.302171	0.698743	0.087066	0.347870	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction4A (Nsco_Tails_biological_replicate_3_fraction4A_127088)	Toll-interacting protein OS=Homo sapiens GN=TOLLIP PE=4 SV=1	E9PNS3_HUMAN	E9PNS3_HUMAN	Toll-interacting protein OS=Homo sapiens GN=TOLLIP PE=4 SV=1	98.400000	0.100000	8639.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction4A.4016.4016.2 File:"Nsco_Tails_biological_replicate_3_fraction4A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4016"	ATTVSTQR	A[+42]TTVSTQR	M	G	99.000000	54.500000	50.100000	31.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	914.470000	2.000000	0.000570	0.620000	2.000000	9.000000	0.624133	2.440967	3.844533	0.953600	0.229750	0.256850	NaN	NaN	NaN	0.784383	3.541397	6.684982	1.109321	0.311970	0.383960	NaN	NaN	NaN	0.946852	1.926683	0.108183	0.444063	0.166031	0.678213	0.087033	0.346307	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11 PE=1 SV=3	UBP11_HUMAN	UBP11_HUMAN	Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11 PE=1 SV=3	100.000000	0.008640	109799.300000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.43779.43779.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43779"	ATVAANPAAAAAAVAAAAAVTEDR	A[+42]TVAANPAAAAAAVAAAAAVTEDR	M	E	99.700000	160.000000	57.700000	141.000000	Acetyl (+42)	2165.110000	2.000000	-0.002100	-0.960000	45.000000	68.000000	0.633933	1.130700	1.637033	0.576250	0.251450	0.436350	NaN	NaN	NaN	0.796699	1.640439	2.846519	0.670350	0.341435	0.652291	NaN	NaN	NaN	0.733525	0.990937	0.054693	0.369361	0.083865	0.563873	0.087000	0.345790	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11 PE=1 SV=3	UBP11_HUMAN	UBP11_HUMAN	Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11 PE=1 SV=3	100.000000	0.012500	109799.300000	1.000000	4.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.45005.45005.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=45005"	ATVAANPAAAAAAVAAAAAVTEDR	A[+42]TVAANPAAAAAAVAAAAAVTEDR	M	E	99.700000	105.000000	57.900000	95.100000	Acetyl (+42), Label:13C(6)15N(4) (+10)	2175.120000	3.000000	-0.000760	-0.350000	45.000000	68.000000	0.633933	1.130700	1.637033	0.576250	0.251450	0.436350	NaN	NaN	NaN	0.796699	1.640439	2.846519	0.670350	0.341435	0.652291	NaN	NaN	NaN	0.733525	0.990937	0.054693	0.369361	0.083828	0.563625	0.086967	0.345274	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11 PE=1 SV=3	UBP11_HUMAN	UBP11_HUMAN	Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11 PE=1 SV=3	100.000000	0.012500	109799.300000	1.000000	4.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.45020.45020.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=45020"	ATVAANPAAAAAAVAAAAAVTEDR	A[+42]TVAANPAAAAAAVAAAAAVTEDR	M	E	99.700000	195.000000	58.200000	180.000000	Acetyl (+42), Label:13C(6) (+6)	2171.130000	2.000000	-0.002200	-1.000000	45.000000	68.000000	0.633933	1.130700	1.637033	0.576250	0.251450	0.436350	NaN	NaN	NaN	0.796699	1.640439	2.846519	0.670350	0.341435	0.652291	NaN	NaN	NaN	0.733525	0.990937	0.054693	0.369361	0.083791	0.563378	0.086935	0.344759	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	THIC_HUMAN	THIC_HUMAN	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	100.000000	0.027700	41332.400000	4.000000	8.000000	21.000000	Spectrum63894 scans:37944,	ATVAPEDVSEVIFGH	A[+28]TVAPEDVSEVIFGH	R	V	99.700000	74.900000	49.900000	63.500000	Dimethyl (+28)	1597.800000	2.000000	-0.001500	-0.960000	45.000000	59.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Fatty acid-binding protein, epidermal OS=Homo sapiens GN=FABP5 PE=1 SV=3	FABP5_HUMAN	FABP5_HUMAN	Fatty acid-binding protein, epidermal OS=Homo sapiens GN=FABP5 PE=1 SV=3	100.000000	0.011500	15146.400000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.16905.16905.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16905"	ATVQQLEGR	A[+42]TVQQLEGR	M	W	99.500000	58.000000	51.600000	35.600000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1052.550000	2.000000	-0.000640	-0.610000	2.000000	10.000000	0.589800	0.321200	0.544533	17.916650	11.972100	0.730700	0.281929	NaN	NaN	0.741234	0.466003	0.946850	20.842402	16.256501	1.092309	0.188562	NaN	NaN	7.257399	8.361252	0.370806	0.470355	0.567576	0.716790	0.005923	0.343735	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Fatty acid-binding protein, epidermal OS=Homo sapiens GN=FABP5 PE=1 SV=3	FABP5_HUMAN	FABP5_HUMAN	Fatty acid-binding protein, epidermal OS=Homo sapiens GN=FABP5 PE=1 SV=3	100.000000	0.016500	15146.400000	2.000000	4.000000	7.000000	NSco_TAILS_20150124_Protein_complex_100Kda.36093.36093.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36093"	ATVQQLEGR	A[+42]TVQQLEGR	M	W	99.700000	64.900000	51.500000	46.000000	Acetyl (+42)	1042.540000	2.000000	0.001100	1.100000	2.000000	10.000000	0.589800	0.321200	0.544533	17.916650	11.972100	0.730700	0.281929	NaN	NaN	0.741234	0.466003	0.946850	20.842402	16.256501	1.092309	0.188562	NaN	NaN	7.257399	8.361252	0.370806	0.470355	0.566826	0.716475	0.005921	0.343225	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Fatty acid-binding protein, epidermal OS=Homo sapiens GN=FABP5 PE=1 SV=3	FABP5_HUMAN	FABP5_HUMAN	Fatty acid-binding protein, epidermal OS=Homo sapiens GN=FABP5 PE=1 SV=3	100.000000	0.016500	15146.400000	2.000000	4.000000	7.000000	NSco_TAILS_20150124_Protein_complex_100Kda.19825.19825.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19825"	ATVQQLEGR	A[+42]TVQQLEGR	M	W	99.700000	69.500000	51.900000	34.600000	Label:13C(6)15N(4) (+10)	1010.540000	2.000000	-0.002400	-2.400000	2.000000	10.000000	0.589800	0.321200	0.544533	17.916650	11.972100	0.730700	0.281929	NaN	NaN	0.741234	0.466003	0.946850	20.842402	16.256501	1.092309	0.188562	NaN	NaN	7.257399	8.361252	0.370806	0.470355	0.566577	0.716161	0.005918	0.342716	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Protein transport protein Sec23B OS=Homo sapiens GN=SEC23B PE=1 SV=2	SC23B_HUMAN	SC23B_HUMAN	Protein transport protein Sec23B OS=Homo sapiens GN=SEC23B PE=1 SV=2	98.900000	0.010000	86463.000000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.41176.41176.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41176"	ATYLEFIQQNEER	A[+42]TYLEFIQQNEER	M	D	99.700000	73.100000	51.600000	65.600000	Acetyl (+42)	1681.790000	2.000000	-0.001200	-0.710000	2.000000	14.000000	0.608000	0.293200	0.482300	0.833650	0.310400	0.372250	NaN	NaN	NaN	0.764107	0.425380	0.838637	0.969783	0.421481	0.556469	NaN	NaN	NaN	0.866945	0.423431	0.075165	0.002930	0.114799	0.004460	0.086772	0.340697	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Protein transport protein Sec23B OS=Homo sapiens GN=SEC23B PE=1 SV=2	SC23B_HUMAN	SC23B_HUMAN	Protein transport protein Sec23B OS=Homo sapiens GN=SEC23B PE=1 SV=2	98.900000	0.010000	86463.000000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.41169.41169.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41169"	ATYLEFIQQNEER	A[+42]TYLEFIQQNEER	M	D	99.700000	80.300000	51.900000	69.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1691.800000	2.000000	-0.001500	-0.860000	2.000000	14.000000	0.608000	0.293200	0.482300	0.833650	0.310400	0.372250	NaN	NaN	NaN	0.764107	0.425380	0.838637	0.969783	0.421481	0.556469	NaN	NaN	NaN	0.866945	0.423431	0.075165	0.002930	0.114749	0.004456	0.086739	0.338207	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of 14 kDa phosphohistidine phosphatase OS=Homo sapiens GN=PHPT1	sp|Q9NRX4-2|PHP14_HUMAN	PHP14_HUMAN	Isoform 2 of 14 kDa phosphohistidine phosphatase OS=Homo sapiens GN=PHPT1	99.500000	0.002880	13653.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.50273.50273.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=50273"	AVADLALIPDVDIDSDGVFKY	A[+42]VADLALIPDVDIDSDGVFKY	M	V	99.700000	77.800000	58.500000	65.700000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	2313.180000	2.000000	-0.003100	-1.400000	2.000000	22.000000	213.940600	159.632600	0.684300	NaN	NaN	NaN	NaN	NaN	NaN	268.870931	231.597737	1.189880	NaN	NaN	NaN	NaN	NaN	NaN	268.870931	231.597737	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3	sp|P25788|PSA3_HUMAN	PSA3_HUMAN	Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2	100.000000	0.006590	28415.700000	2.000000	4.000000	5.000000	Spectrum20068 scans:14750,	AVAGLLADAR	A[+28]VAGLLADAR	M	S	99.500000	63.000000	47.700000	43.400000	Dimethyl (+28)	983.580000	2.000000	0.000420	0.430000	77.000000	86.000000	0.531033	0.213233	0.413333	0.446200	0.312950	0.742400	NaN	NaN	NaN	0.667379	0.309363	0.718716	0.519064	0.424944	1.109799	NaN	NaN	NaN	0.593221	0.367153	0.079172	0.099390	0.120706	0.150999	0.086674	0.337221	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Abhydrolase domain-containing protein 14B OS=Homo sapiens GN=ABHD14B PE=1 SV=1	sp|Q96IU4|ABHEB_HUMAN	ABHEB_HUMAN	Abhydrolase domain-containing protein 14B OS=Homo sapiens GN=ABHD14B PE=1 SV=1	100.000000	0.002330	22328.000000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.52343.52343.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=52343"	AVAIDLPGLGH	A[+28]VAIDLPGLGH	R	S	99.700000	74.200000	53.100000	47.000000	Dimethyl (+28)	1089.620000	2.000000	0.000790	0.720000	64.000000	74.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	sp|P49368|TCPG_HUMAN	TCPG_HUMAN	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	100.000000	0.001320	60517.400000	1.000000	1.000000	1.000000	Spectrum10039 scans:36233,	AVAQALEVIPR	A[+28]VAQALEVIPR	R	T	99.500000	62.000000	49.000000	40.800000	Dimethyl (+28)	1193.710000	2.000000	0.000320	0.270000	439.000000	449.000000	0.627267	0.251733	0.369667	158.091250	9.176750	0.178650	NaN	1.117414	NaN	0.788321	0.365219	0.642787	183.907227	12.460792	0.267060	NaN	0.475896	NaN	92.347774	4.433969	0.449918	0.375211	0.685344	0.569546	0.086512	0.022925	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	sp|P49368|TCPG_HUMAN	TCPG_HUMAN	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	100.000000	0.004670	60517.400000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.41907.41907.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41907"	AVAQALEVIPR	A[+28]VAQALEVIPR	R	T	99.700000	67.600000	53.700000	48.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1203.720000	2.000000	-0.000690	-0.570000	439.000000	449.000000	0.627267	0.251733	0.369667	158.091250	9.176750	0.178650	NaN	1.117414	NaN	0.788321	0.365219	0.642787	183.907227	12.460792	0.267060	NaN	0.475896	NaN	92.347774	4.433969	0.449918	0.375211	0.685043	0.569297	0.086480	0.022892	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Protein mago nashi homolog 2 OS=Homo sapiens GN=MAGOHB PE=4 SV=1	F5H124_HUMAN	F5H124_HUMAN	Protein mago nashi homolog 2 OS=Homo sapiens GN=MAGOHB PE=4 SV=1	93.100000	0.002360	9475.100000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.57686.57686.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=57686"	AVASDFYLR	A[+42]VASDFYLR	M	Y	99.000000	55.700000	50.700000	36.200000	Acetyl (+42)	1082.540000	2.000000	0.001200	1.100000	2.000000	10.000000	0.531700	0.366367	0.689133	1.327400	2.507900	1.566400	NaN	NaN	NaN	0.668217	0.531531	1.198284	1.544162	3.405391	2.341580	NaN	NaN	NaN	1.106189	1.968461	0.240001	0.401428	0.365264	0.608810	0.086447	0.335266	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	TCPQ_HUMAN	TCPQ_HUMAN	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	100.000000	0.014500	59603.000000	5.000000	8.000000	11.000000	Spectrum22197 scans:12374,	AVDDGVNTF	A[+28]VDDGVNTF	R	K	98.800000	47.200000	43.700000	31.800000	Dimethyl (+28)	964.450000	2.000000	0.000078	0.081000	391.000000	399.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	TCPQ_HUMAN	TCPQ_HUMAN	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	100.000000	0.014500	59603.000000	5.000000	8.000000	11.000000	Spectrum51888 scans:23754,	AVDDGVNTFKVLTR	A[+28]VDDGVNTFKVLTR	R	D	99.700000	70.600000	51.600000	51.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1599.930000	3.000000	0.004300	2.700000	391.000000	404.000000	17.616233	5.626600	0.326300	3.574800	2.232750	2.637200	NaN	NaN	NaN	22.139290	8.163169	0.567380	4.158558	3.031774	3.942298	NaN	NaN	NaN	13.148924	5.597471	0.249108	0.273613	0.378627	0.414601	0.086383	0.334297	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1	ROA0_HUMAN	ROA0_HUMAN	Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1	100.000000	0.005270	30822.500000	3.000000	3.000000	4.000000	Spectrum16770 scans:6957,	AVDGNTVELKR	A[+28]VDGNTVELKR	H	A	99.700000	49.500000	50.100000	34.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1274.730000	3.000000	-0.001300	-1.000000	71.000000	81.000000	0.409067	0.360433	2.471967	0.902500	NaN	NaN	NaN	NaN	NaN	0.514097	0.522923	4.298325	1.049876	NaN	NaN	NaN	NaN	NaN	0.781987	0.522923	0.210114	NaN	0.319218	NaN	0.086351	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV=1	NIT2_HUMAN	NIT2_HUMAN	Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV=1	99.600000	0.002330	30590.800000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.27089.27089.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27089"	AVDNQVYVATASPAR	A[+28]VDNQVYVATASPAR	R	D	99.300000	58.500000	55.100000	52.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1598.830000	2.000000	-0.003700	-2.300000	196.000000	210.000000	NaN	NaN	NaN	20.594600	0.360850	0.094150	NaN	NaN	NaN	NaN	NaN	NaN	23.957656	0.489986	0.140743	NaN	NaN	NaN	23.957656	0.489986	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Elongation factor Tu, mitochondrial OS=Homo sapiens GN=TUFM PE=1 SV=2	EFTU_HUMAN	EFTU_HUMAN	Elongation factor Tu, mitochondrial OS=Homo sapiens GN=TUFM PE=1 SV=2	99.900000	0.004480	49524.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.18007.18007.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18007"	AVDTYIPVPAR	A[+28]VDTYIPVPAR	D	D	99.600000	61.500000	54.000000	46.400000	Dimethyl (+28)	1228.680000	2.000000	-0.000460	-0.370000	242.000000	252.000000	13.901100	0.265433	0.048500	1.300450	0.409150	0.313750	NaN	NaN	NaN	17.470278	0.385095	0.084333	1.512811	0.555571	0.469019	NaN	NaN	NaN	9.491544	0.470333	0.404416	0.114135	0.613878	0.172570	0.086286	0.331423	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Glomulin OS=Homo sapiens GN=GLMN	sp|Q92990-2|GLMN_HUMAN	GLMN_HUMAN	Isoform 2 of Glomulin OS=Homo sapiens GN=GLMN	97.500000	0.002880	48150.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.35578.35578.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35578"	AVEELQSIIKR	A[+42]VEELQSIIKR	M	C	99.700000	71.800000	54.900000	56.200000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1372.810000	2.000000	0.000840	0.610000	2.000000	12.000000	9.132767	4.558133	0.762067	43.966850	33.439600	0.757550	NaN	NaN	NaN	11.477651	6.613019	1.325103	51.146546	45.406477	1.132446	NaN	NaN	NaN	31.312099	26.009748	0.000000	0.128036	0.000000	0.193420	0.086254	0.330949	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Glomulin OS=Homo sapiens GN=GLMN	sp|Q92990|GLMN_HUMAN	GLMN_HUMAN	Glomulin OS=Homo sapiens GN=GLMN PE=1 SV=2	98.900000	0.002500	68194.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.36004.36004.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36004"	AVEELQSIIKR	A[+42]VEELQSIIKR	M	C	99.700000	65.400000	55.000000	52.400000	Acetyl (+42), Dimethyl (+28)	1354.780000	2.000000	0.001300	0.930000	2.000000	12.000000	9.132767	4.558133	0.762067	43.966850	33.439600	0.757550	NaN	NaN	NaN	11.477651	6.613019	1.325103	51.146546	45.406477	1.132446	NaN	NaN	NaN	31.312099	26.009748	0.000000	0.128036	0.000000	0.193252	0.086190	0.330005	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of General transcription factor II-I OS=Homo sapiens GN=GTF2I	sp|P78347-2|GTF2I_HUMAN	GTF2I_HUMAN	Isoform 2 of General transcription factor II-I OS=Homo sapiens GN=GTF2I	100.000000	0.001320	107953.400000	1.000000	1.000000	1.000000	Spectrum45614 scans:16498,	AVEIETLR	NaN	D	K	99.000000	53.900000	47.800000	16.400000	Dimethyl (+28), Label:13C(6) (+6)	963.570000	2.000000	-0.000031	-0.032000	106.000000	113.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	PGP_HUMAN	PGP_HUMAN	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	100.000000	0.018400	33988.600000	5.000000	9.000000	14.000000	Spectrum35964 scans:5364,	AVEMAAQR	A[+28]VEMAAQR	R	Q	98.900000	49.900000	47.100000	26.500000	Dimethyl (+28), Label:13C(6) (+6)	908.480000	2.000000	-0.000950	-1.000000	221.000000	228.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.103000	83149.600000	4.000000	9.000000	23.000000	Nsco_Tails_biological_replicate2_apoptosis.36981.36981.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36981"	AVEQGVINNTVLGYFIGR	A[+28]VEQGVINNTVLGYFIGR	D	I	99.300000	81.900000	58.400000	70.700000	Dimethyl (+28)	1977.090000	2.000000	0.017000	8.600000	395.000000	412.000000	0.108800	0.149400	1.717500	0.767050	0.493300	0.639400	NaN	NaN	NaN	0.136735	0.216752	2.986437	0.892308	0.669835	0.955826	NaN	NaN	NaN	0.514521	0.443294	0.403199	0.300766	0.610694	0.453370	0.086062	0.328598	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.103000	83149.600000	4.000000	9.000000	23.000000	Nsco_Tails_biological_replicate2_apoptosis.37001.37001.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37001"	AVEQGVINNTVLGYFIGR	A[+28]VEQGVINNTVLGYFIGR	D	I	99.700000	109.000000	58.400000	96.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1987.080000	2.000000	0.000730	0.370000	395.000000	412.000000	0.108800	0.149400	1.717500	0.767050	0.493300	0.639400	NaN	NaN	NaN	0.136735	0.216752	2.986437	0.892308	0.669835	0.955826	NaN	NaN	NaN	0.514521	0.443294	0.403199	0.300766	0.610162	0.453173	0.086030	0.324451	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	WASH complex subunit 7 OS=Homo sapiens GN=KIAA1033 PE=1 SV=2	sp|Q2M389|WASH7_HUMAN	WASH7_HUMAN	WASH complex subunit 7 OS=Homo sapiens GN=KIAA1033 PE=1 SV=2	98.900000	0.004480	136391.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.32079.32079.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32079"	AVETLSPDWEFDR	A[+42]VETLSPDWEFDR	M	V	99.700000	70.400000	48.700000	58.800000	Acetyl (+42)	1605.730000	2.000000	-0.003800	-2.400000	2.000000	14.000000	4.890100	NaN	NaN	0.481600	0.069100	0.143450	NaN	NaN	NaN	6.145658	NaN	NaN	0.560244	0.093829	0.214441	NaN	NaN	NaN	3.352951	0.093829	0.442125	NaN	0.668485	NaN	0.085998	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	SYAC_HUMAN	SYAC_HUMAN	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	100.000000	0.009330	106795.200000	2.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.41461.41461.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41461"	AVFDETYPDPVR	A[+28]VFDETYPDPVR	R	V	99.400000	56.400000	52.100000	49.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1445.710000	2.000000	-0.001300	-0.890000	684.000000	695.000000	NaN	120.170400	0.670867	10.431550	10.906850	0.945800	NaN	NaN	NaN	NaN	174.345295	1.166522	12.135001	14.810035	1.413858	NaN	NaN	NaN	12.135001	94.577665	NaN	0.000000	NaN	0.000000	1.000000	0.323543	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6	sp|O94906|PRP6_HUMAN	PRP6_HUMAN	Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1	100.000000	0.005270	106909.700000	2.000000	3.000000	4.000000	Spectrum9736 scans:35114,	AVIGIGIEEEDR	A[+28]VIGIGIEEEDR	R	K	98.500000	54.700000	49.900000	44.500000	Dimethyl (+28)	1327.700000	2.000000	-0.002700	-2.000000	528.000000	539.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	THOP1_HUMAN	THOP1_HUMAN	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	100.000000	0.011900	78822.600000	5.000000	8.000000	9.000000	Spectrum45398 scans:16255,	AVILELKR	NaN	R	A	99.000000	33.100000	43.400000	14.400000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1014.690000	3.000000	0.000520	0.510000	311.000000	318.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	THOP1_HUMAN	THOP1_HUMAN	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	100.000000	0.011900	78822.600000	5.000000	8.000000	9.000000	Spectrum45404 scans:16262,	AVILELKR	NaN	R	A	99.000000	44.900000	41.000000	18.400000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1006.710000	3.000000	-0.000900	-0.900000	311.000000	318.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	EF1G_HUMAN	EF1G_HUMAN	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	100.000000	0.017100	50101.400000	6.000000	11.000000	13.000000	Spectrum19561 scans:13062,	AVLGEVKLCEK	NaN	R	M	99.500000	37.500000	49.900000	19.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36)	1344.800000	3.000000	0.000270	0.200000	202.000000	212.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.039500	29487.900000	8.000000	18.000000	30.000000	Spectrum50011 scans:21569,	AVLKFAAATGATPIAGR	A[+28]VLKFAAATGATPIAGR	R	F	99.700000	61.500000	51.100000	38.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1688.010000	3.000000	0.000470	0.280000	86.000000	102.000000	5.414933	11.823200	0.532333	381.439250	NaN	NaN	NaN	NaN	NaN	6.805245	17.153303	0.925636	443.727497	NaN	NaN	NaN	NaN	NaN	225.266371	17.153303	0.119597	NaN	0.180201	NaN	0.085679	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.039500	29487.900000	8.000000	18.000000	30.000000	Spectrum50009 scans:21567,	AVLKFAAATGATPIAGR	A[+28]VLKFAAATGATPIAGR	R	F	99.700000	95.400000	49.900000	86.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1680.030000	3.000000	0.000340	0.200000	86.000000	102.000000	5.414933	11.823200	0.532333	381.439250	NaN	NaN	NaN	NaN	NaN	6.805245	17.153303	0.925636	443.727497	NaN	NaN	NaN	NaN	NaN	225.266371	17.153303	0.119597	NaN	0.180123	NaN	0.085521	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Long of Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1	sp|P25786-2|PSA1_HUMAN	PSA1_HUMAN	Isoform Long of Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1	100.000000	0.001320	30221.900000	1.000000	1.000000	1.000000	Spectrum18275 scans:10159,	AVLVALKR	NaN	H	A	99.000000	22.000000	37.200000	0.030000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	934.690000	3.000000	0.000075	0.081000	50.000000	57.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	MARE1_HUMAN	MARE1_HUMAN	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	100.000000	0.030300	29981.500000	5.000000	15.000000	23.000000	Spectrum53982 scans:26083,	AVNVYSTSVTSDNLSR	A[+42]VNVYSTSVTSDNLSR	M	H	99.700000	109.000000	50.000000	92.200000	Acetyl (+42), Label:13C(6) (+6)	1759.860000	2.000000	-0.004200	-2.400000	2.000000	17.000000	0.555000	0.304800	0.549867	0.795600	0.451950	0.563050	NaN	NaN	NaN	0.697499	0.442209	0.956124	0.925520	0.613687	0.841692	NaN	NaN	NaN	0.811509	0.527948	0.088858	0.102493	0.133711	0.153695	0.085426	0.319963	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	MARE1_HUMAN	MARE1_HUMAN	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	98.900000	0.010000	29981.500000	1.000000	3.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.24444.24444.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24444"	AVNVYSTSVTSDNLSR	A[+42]VNVYSTSVTSDNLSR	M	H	99.700000	87.300000	53.600000	72.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1763.860000	2.000000	0.002100	1.200000	2.000000	17.000000	0.555000	0.304800	0.549867	0.795600	0.451950	0.563050	NaN	NaN	NaN	0.697499	0.442209	0.956124	0.925520	0.613687	0.841692	NaN	NaN	NaN	0.811509	0.527948	0.088858	0.102493	0.133653	0.153628	0.085394	0.319521	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	MARE1_HUMAN	MARE1_HUMAN	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	98.900000	0.008960	29981.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.21155.21155.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21155"	AVNVYSTSVTSDNLSR	A[+42]VNVYSTSVTSDNLSR	M	H	99.700000	115.000000	53.000000	110.000000	Acetyl (+42)	1753.850000	2.000000	-0.002600	-1.500000	2.000000	17.000000	0.555000	0.304800	0.549867	0.795600	0.451950	0.563050	NaN	NaN	NaN	0.697499	0.442209	0.956124	0.925520	0.613687	0.841692	NaN	NaN	NaN	0.811509	0.527948	0.088858	0.102493	0.133595	0.153562	0.085363	0.319080	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.035100	99012.600000	6.000000	11.000000	14.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.5719.5719.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=5719"	AVPEAAEER	A[+28]VPEAAEER	V	A	99.600000	53.700000	50.400000	31.000000	Dimethyl (+28)	998.500000	2.000000	-0.000300	-0.300000	8.000000	16.000000	2.722533	0.465133	1.446333	0.858250	0.423150	0.498850	NaN	NaN	NaN	3.421558	0.674823	2.514925	0.998400	0.574581	0.745721	NaN	NaN	NaN	2.209979	0.624702	0.319255	0.050968	0.479781	0.076332	0.085331	0.318641	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101 PE=4 SV=1	sp|Q99816-2|TS101_HUMAN	TS101_HUMAN	Isoform 2 of Tumor susceptibility gene 101 protein OS=Homo sapiens GN=TSG101	94.700000	0.001320	31715.300000	1.000000	1.000000	1.000000	Spectrum26901 scans:7505,	AVSESQLKK	A[+42]VSESQLKK	M	M	98.800000	50.100000	48.700000	27.100000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1102.660000	2.000000	-0.000220	-0.200000	2.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.030300	53123.900000	9.000000	17.000000	23.000000	Spectrum49408 scans:20880,	AVSTGVQAGIPMPC	A[+28]VSTGVQAGIPMPC[+57]	R	F	99.500000	59.600000	47.700000	49.200000	Dimethyl (+28), Oxidation (+16), Carbamidomethyl (+57)	1430.690000	2.000000	-0.001600	-1.100000	409.000000	422.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.030300	53123.900000	9.000000	17.000000	23.000000	Spectrum54806 scans:27003,	AVSTGVQAGIPMPC	A[+28]VSTGVQAGIPMPC[+57]	R	F	99.700000	66.900000	48.300000	53.000000	Dimethyl (+28), Carbamidomethyl (+57)	1414.690000	2.000000	-0.001600	-1.100000	409.000000	422.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Muscleblind-like protein 1 OS=Homo sapiens GN=MBNL1 PE=4 SV=1	sp|Q9NR56|MBNL1_HUMAN	MBNL1_HUMAN	Muscleblind-like protein 1 OS=Homo sapiens GN=MBNL1 PE=1 SV=2	86.700000	0.002310	41798.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.18894.18894.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18894"	AVSVTPIR	A[+42]VSVTPIR	M	D	99.000000	61.300000	51.600000	0.000000	Acetyl (+42)	883.510000	2.000000	0.001900	2.200000	2.000000	9.000000	0.339467	0.580067	2.388433	0.800600	0.220950	0.276550	0.701229	0.331714	0.496071	0.426626	0.841571	4.153075	0.931336	0.300020	0.413409	0.469002	0.141274	0.237719	0.608988	0.427622	0.063782	0.181182	0.095645	0.270875	0.005801	0.021606	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1	RD23A_HUMAN	RD23A_HUMAN	UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1	99.800000	0.007510	39591.100000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.44311.44311.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44311"	AVTITLKTLQQQTF	A[+42]VTITLKTLQQQTF	M	K	99.600000	65.200000	56.900000	55.100000	Acetyl (+42), Dimethyl (+28)	1660.950000	2.000000	0.005200	3.100000	2.000000	15.000000	0.761400	0.400800	0.526400	16.081800	14.133200	0.781050	NaN	NaN	NaN	0.956893	0.581488	0.915319	18.707925	19.190984	1.167576	NaN	NaN	NaN	9.832409	9.886236	0.439267	0.463023	0.658426	0.691942	0.085049	0.316029	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1	RD23A_HUMAN	RD23A_HUMAN	UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1	99.800000	0.007510	39591.100000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.44254.44254.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44254"	AVTITLKTLQQQTF	A[+42]VTITLKTLQQQTF	M	K	99.600000	61.000000	56.900000	49.300000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1668.950000	2.000000	-0.002700	-1.600000	2.000000	15.000000	0.761400	0.400800	0.526400	16.081800	14.133200	0.781050	NaN	NaN	NaN	0.956893	0.581488	0.915319	18.707925	19.190984	1.167576	NaN	NaN	NaN	9.832409	9.886236	0.439267	0.463023	0.658142	0.691644	0.085018	0.315598	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1	SP16H_HUMAN	SP16H_HUMAN	FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1	98.900000	0.007510	119899.400000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.20110.20110.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20110"	AVTLDKDAYYR	A[+42]VTLDKDAYYR	M	R	99.700000	65.400000	53.200000	47.500000	Acetyl (+42), Dimethyl (+28)	1383.700000	2.000000	-0.002300	-1.700000	2.000000	12.000000	2.676467	6.403067	1.411733	7.756650	32.592700	4.217000	NaN	NaN	10.017371	3.363663	9.289680	2.454761	9.023295	44.256501	6.303909	NaN	NaN	4.800351	6.193479	26.773090	0.272842	0.023432	0.408615	0.034987	0.084987	0.314739	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction4A (Nsco_Tails_biological_replicate_3_fraction4A_127088)	FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1	SP16H_HUMAN	SP16H_HUMAN	FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1	99.600000	0.100000	119899.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction4A.13111.13111.2 File:"Nsco_Tails_biological_replicate_3_fraction4A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13111"	AVTLDKDAYYR	A[+42]VTLDKDAYYR	M	R	99.700000	78.700000	54.800000	49.900000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1393.750000	2.000000	-0.000960	-0.690000	2.000000	12.000000	2.676467	6.403067	1.411733	7.756650	32.592700	4.217000	NaN	NaN	10.017371	3.363663	9.289680	2.454761	9.023295	44.256501	6.303909	NaN	NaN	4.800351	6.193479	26.773090	0.272842	0.023432	0.408439	0.034972	0.084955	0.314312	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1	SP16H_HUMAN	SP16H_HUMAN	FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1	98.900000	0.008960	119899.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.17650.17650.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17650"	AVTLDKDAYYR	A[+42]VTLDKDAYYR	M	R	99.700000	71.400000	54.000000	47.400000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1401.730000	2.000000	-0.000560	-0.400000	2.000000	12.000000	2.676467	6.403067	1.411733	7.756650	32.592700	4.217000	NaN	NaN	10.017371	3.363663	9.289680	2.454761	9.023295	44.256501	6.303909	NaN	NaN	4.800351	6.193479	26.773090	0.272842	0.023432	0.408263	0.034957	0.084924	0.312613	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.035000	57471.900000	9.000000	15.000000	15.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.12408.12408.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12408"	AVTQLANR	AVTQLANR	H	T	99.000000	58.900000	51.600000	18.800000		871.490000	2.000000	0.000100	0.110000	420.000000	427.000000	0.430067	0.189733	0.496333	2.349650	1.182950	0.616350	8.284743	1.048471	0.525043	0.540488	0.275268	0.863038	2.733343	1.606287	0.921369	5.541078	0.446534	0.251602	2.938303	0.776030	0.179433	0.204553	0.268376	0.304765	0.005788	0.021257	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.025000	90567.200000	8.000000	16.000000	19.000000	Spectrum17145 scans:7698,	AVTVAPPGAR	A[+28]VTVAPPGAR	F	Q	98.800000	50.200000	48.200000	24.300000	Dimethyl (+28), Label:13C(6) (+6)	971.590000	2.000000	-0.000210	-0.220000	195.000000	204.000000	1.401367	13.706067	9.295467	0.620700	0.760350	1.243050	NaN	NaN	NaN	1.761175	19.884999	16.163218	0.722059	1.032453	1.858211	NaN	NaN	NaN	1.241617	10.458726	0.252300	0.434504	0.377200	0.647094	0.084862	0.311350	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.025000	90567.200000	8.000000	16.000000	19.000000	Spectrum17146 scans:7699,	AVTVAPPGAR	A[+28]VTVAPPGAR	F	Q	99.500000	59.600000	48.300000	37.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	975.570000	2.000000	-0.000310	-0.320000	195.000000	204.000000	1.401367	13.706067	9.295467	0.620700	0.760350	1.243050	NaN	NaN	NaN	1.761175	19.884999	16.163218	0.722059	1.032453	1.858211	NaN	NaN	NaN	1.241617	10.458726	0.252300	0.434504	0.377037	0.642681	0.084737	0.310932	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	UPF0364 protein C6orf211 OS=Homo sapiens GN=C6orf211 PE=1 SV=1	CF211_HUMAN	CF211_HUMAN	UPF0364 protein C6orf211 OS=Homo sapiens GN=C6orf211 PE=1 SV=1	97.400000	0.005760	51156.200000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.39546.39546.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39546"	AVVPASLSGQDVGSFAYLTIKDR	A[+42]VVPASLSGQDVGSFAYLTIKDR	M	I	99.700000	104.000000	60.100000	102.000000	Acetyl (+42), Dimethyl (+28)	2463.310000	2.000000	0.004300	1.700000	2.000000	24.000000	2.043100	1.009500	0.494100	2.104700	0.599050	NaN	NaN	NaN	NaN	2.567676	1.464600	0.859155	2.448393	0.813429	NaN	NaN	NaN	NaN	2.508035	1.139015	0.015136	0.177250	0.022610	0.261726	0.084706	0.310515	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	UPF0364 protein C6orf211 OS=Homo sapiens GN=C6orf211 PE=1 SV=1	CF211_HUMAN	CF211_HUMAN	UPF0364 protein C6orf211 OS=Homo sapiens GN=C6orf211 PE=1 SV=1	98.800000	0.002630	51156.200000	1.000000	2.000000	2.000000	Spectrum68038 scans:42653,	AVVPASLSGQDVGSFAYLTIKDR	A[+42]VVPASLSGQDVGSFAYLTIKDR	M	I	99.700000	64.000000	55.500000	60.600000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2473.340000	3.000000	-0.008300	-3.300000	2.000000	24.000000	2.043100	1.009500	0.494100	2.104700	0.599050	NaN	NaN	NaN	NaN	2.567676	1.464600	0.859155	2.448393	0.813429	NaN	NaN	NaN	NaN	2.508035	1.139015	0.015136	0.177250	0.022580	0.261615	0.084675	0.309683	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	UPF0364 protein C6orf211 OS=Homo sapiens GN=C6orf211 PE=1 SV=1	CF211_HUMAN	CF211_HUMAN	UPF0364 protein C6orf211 OS=Homo sapiens GN=C6orf211 PE=1 SV=1	98.800000	0.002630	51156.200000	1.000000	2.000000	2.000000	Spectrum68051 scans:42667,	AVVPASLSGQDVGSFAYLTIKDR	A[+42]VVPASLSGQDVGSFAYLTIKDR	M	I	99.700000	68.100000	55.400000	57.400000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2481.320000	3.000000	0.000260	0.100000	2.000000	24.000000	2.043100	1.009500	0.494100	2.104700	0.599050	NaN	NaN	NaN	NaN	2.567676	1.464600	0.859155	2.448393	0.813429	NaN	NaN	NaN	NaN	2.508035	1.139015	0.015136	0.177250	0.022551	0.261504	0.084644	0.309269	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Molybdopterin adenylyltransferase OS=Homo sapiens GN=GPHN PE=4 SV=1	F5H039_HUMAN	F5H039_HUMAN	Molybdopterin adenylyltransferase OS=Homo sapiens GN=GPHN PE=4 SV=1	99.900000	0.002500	84717.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.22172.22172.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22172"	AVVQVEDTELIR	A[+28]VVQVEDTELIR	D	E	99.700000	68.600000	55.300000	41.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1408.780000	2.000000	0.001000	0.720000	469.000000	480.000000	1.758433	0.666233	0.366900	0.801250	0.423800	0.530250	NaN	NaN	NaN	2.209920	0.966583	0.637976	0.932092	0.575463	0.792660	NaN	NaN	NaN	1.571006	0.771023	0.245901	0.158135	0.366214	0.233204	0.084614	0.308856	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Molybdopterin adenylyltransferase OS=Homo sapiens GN=GPHN PE=4 SV=1	F5H039_HUMAN	F5H039_HUMAN	Molybdopterin adenylyltransferase OS=Homo sapiens GN=GPHN PE=4 SV=1	96.700000	0.004480	84717.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.19373.19373.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19373"	AVVQVEDTELIR	A[+28]VVQVEDTELIR	D	E	99.200000	56.300000	55.200000	39.800000	Dimethyl (+28)	1398.770000	2.000000	-0.002300	-1.600000	469.000000	480.000000	1.758433	0.666233	0.366900	0.801250	0.423800	0.530250	NaN	NaN	NaN	2.209920	0.966583	0.637976	0.932092	0.575463	0.792660	NaN	NaN	NaN	1.571006	0.771023	0.245901	0.158135	0.363716	0.233105	0.084583	0.307216	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.015800	72316.700000	7.000000	10.000000	12.000000	Spectrum55317 scans:27610,	AVVTVPAYFNDAQR	A[+28]VVTVPAYFNDAQR	H	Q	99.000000	59.700000	51.600000	47.600000	Dimethyl (+28), Label:13C(6) (+6)	1583.840000	2.000000	0.001100	0.700000	168.000000	181.000000	3.097633	3.279133	1.118633	0.589950	0.203750	0.372050	NaN	NaN	NaN	3.892966	4.757423	1.945111	0.686288	0.276665	0.556170	NaN	NaN	NaN	2.289627	2.517044	0.388912	0.463019	0.575000	0.679356	0.084552	0.306808	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.015800	72316.700000	7.000000	10.000000	12.000000	Spectrum55270 scans:27554,	AVVTVPAYFNDAQR	A[+28]VVTVPAYFNDAQR	H	Q	99.100000	38.700000	51.100000	29.200000	Dimethyl (+28)	1577.820000	3.000000	-0.002600	-1.600000	168.000000	181.000000	3.097633	3.279133	1.118633	0.589950	0.203750	0.372050	NaN	NaN	NaN	3.892966	4.757423	1.945111	0.686288	0.276665	0.556170	NaN	NaN	NaN	2.289627	2.517044	0.388912	0.463019	0.574755	0.678209	0.084490	0.306402	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	PGP_HUMAN	PGP_HUMAN	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	100.000000	0.018400	33988.600000	5.000000	9.000000	14.000000	Spectrum48084 scans:19353,	AVVVGFDPH	A[+28]VVVGFDPH	R	F	98.900000	51.000000	48.100000	33.600000	Dimethyl (+28)	967.510000	2.000000	-0.000160	-0.170000	167.000000	175.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Actin-related protein 2/3 complex subunit 1B OS=Homo sapiens GN=ARPC1B PE=1 SV=3	ARC1B_HUMAN	ARC1B_HUMAN	Actin-related protein 2/3 complex subunit 1B OS=Homo sapiens GN=ARPC1B PE=1 SV=3	100.000000	0.005270	40931.800000	3.000000	3.000000	4.000000	Spectrum64352 scans:38461,	AYHSFLVEPISC	A[+42]YHSFLVEPISC[+57]	M	H	99.700000	78.400000	45.700000	62.700000	Acetyl (+42), Carbamidomethyl (+57)	1463.680000	2.000000	-0.000230	-0.160000	2.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Actin-related protein 2/3 complex subunit 1B OS=Homo sapiens GN=ARPC1B PE=1 SV=3	ARC1B_HUMAN	ARC1B_HUMAN	Actin-related protein 2/3 complex subunit 1B OS=Homo sapiens GN=ARPC1B PE=1 SV=3	100.000000	0.010000	40931.800000	3.000000	3.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.30672.30672.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30672"	AYHSFLVEPISCH	A[+42]YHSFLVEPISC[+57]H	M	A	99.700000	73.900000	49.400000	72.800000	Acetyl (+42), Carbamidomethyl (+57)	1600.730000	2.000000	-0.001100	-0.680000	2.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Actin-related protein 2/3 complex subunit 1B OS=Homo sapiens GN=ARPC1B PE=1 SV=3	ARC1B_HUMAN	ARC1B_HUMAN	Actin-related protein 2/3 complex subunit 1B OS=Homo sapiens GN=ARPC1B PE=1 SV=3	100.000000	0.010000	40931.800000	3.000000	3.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38966.38966.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38966"	AYHSFLVEPISCHAW	A[+42]YHSFLVEPISC[+57]HAW	M	N	99.700000	55.100000	50.300000	44.700000	Acetyl (+42), Carbamidomethyl (+57)	1857.850000	2.000000	-0.000400	-0.220000	2.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1	PCNA_HUMAN	PCNA_HUMAN	Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1	100.000000	0.002630	28751.300000	2.000000	2.000000	2.000000	Spectrum49002 scans:20412,	CAGNEDIITLR	C[+85.1]AGNEDIITLR	K	A	99.700000	78.900000	48.200000	65.600000	Carbamidomethyl (+57), Dimethyl (+28)	1288.640000	2.000000	-0.002500	-2.000000	81.000000	91.000000	0.491567	0.310467	0.632933	0.195050	0.466300	1.703800	NaN	NaN	NaN	0.617779	0.450430	1.100562	0.226901	0.633173	2.546977	NaN	NaN	NaN	0.422340	0.541802	0.275916	0.106361	0.406897	0.155464	0.084336	0.304386	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Phosphoglycerate kinase 1 OS=Homo sapiens GN=PGK1 PE=1 SV=3	PGK1_HUMAN	PGK1_HUMAN	Phosphoglycerate kinase 1 OS=Homo sapiens GN=PGK1 PE=1 SV=3	100.000000	0.011800	44597.300000	4.000000	4.000000	5.000000	NSco_TAILS_20150124_Protein_complex_100Kda.62801.62801.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=62801"	CANPAAGSVILLENLR	C[+85.1]ANPAAGSVILLENLR	A	F	99.400000	65.400000	56.800000	65.400000	Carbamidomethyl (+57), Dimethyl (+28)	1724.930000	2.000000	0.001000	0.590000	108.000000	123.000000	1.037067	3.924767	2.877300	NaN	NaN	NaN	NaN	NaN	NaN	1.303339	5.694119	5.003130	NaN	NaN	NaN	NaN	NaN	NaN	1.303339	5.694119	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	sp|P60660-2|MYL6_HUMAN	MYL6_HUMAN	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	100.000000	0.010500	16942.800000	4.000000	7.000000	8.000000	Spectrum65164 scans:39358,	CDFTEDQTAEFKEAF	C[+99]DFTEDQTAEFKEAF	M	Q	99.700000	83.700000	41.100000	83.100000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl:2H(4) (+32)	1910.810000	2.000000	-0.005200	-2.700000	2.000000	16.000000	171.878167	39.694200	1.153567	237.323850	116.938950	0.488450	NaN	NaN	NaN	216.008755	57.589032	2.005854	276.078348	158.787358	0.730174	NaN	NaN	NaN	246.043552	108.188195	0.000000	0.000000	0.000000	0.000000	0.083484	0.302397	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	sp|P60660-2|MYL6_HUMAN	MYL6_HUMAN	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	100.000000	0.027500	16942.800000	2.000000	3.000000	11.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37371.37371.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37371"	CDFTEDQTAEFKEAF	C[+99]DFTEDQTAEFKEAF	M	Q	99.700000	96.300000	44.000000	96.300000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36)	1914.810000	2.000000	-0.001100	-0.590000	2.000000	16.000000	171.878167	39.694200	1.153567	237.323850	116.938950	0.488450	NaN	NaN	NaN	216.008755	57.589032	2.005854	276.078348	158.787358	0.730174	NaN	NaN	NaN	246.043552	108.188195	0.000000	0.000000	0.000000	0.000000	0.083454	0.302002	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	sp|P60660-2|MYL6_HUMAN	MYL6_HUMAN	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	100.000000	0.044800	16942.800000	3.000000	6.000000	10.000000	Nsco_Tails_biological_replicate2_apoptosis.31944.31944.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31944"	CDFTEDQTAEFKEAF	C[+99]DFTEDQTAEFKEAF	M	Q	99.700000	96.200000	42.800000	96.200000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl (+28)	1906.790000	2.000000	-0.002500	-1.300000	2.000000	16.000000	171.878167	39.694200	1.153567	237.323850	116.938950	0.488450	NaN	NaN	NaN	216.008755	57.589032	2.005854	276.078348	158.787358	0.730174	NaN	NaN	NaN	246.043552	108.188195	0.000000	0.000000	0.000000	0.000000	0.083423	0.301608	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	sp|P60660-2|MYL6_HUMAN	MYL6_HUMAN	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	100.000000	0.023000	16942.800000	2.000000	6.000000	8.000000	Nsco_Tails_biological_replicate1_apoptosis.46567.46567.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46567"	CDFTEDQTAEFKEAFQLFDR	C[+99]DFTEDQTAEFKEAFQLFDR	M	T	99.700000	96.700000	49.000000	96.700000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl (+28)	2566.130000	2.000000	-0.002300	-0.890000	2.000000	21.000000	440.204333	225.067067	55.093867	335.875250	145.617000	0.447300	NaN	NaN	NaN	553.229023	326.531193	95.798760	390.722990	197.728291	0.668660	NaN	NaN	NaN	471.976006	262.129742	0.000000	0.000000	0.000000	0.000000	0.083393	0.301215	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	sp|P60660-2|MYL6_HUMAN	MYL6_HUMAN	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	100.000000	0.044800	16942.800000	3.000000	6.000000	10.000000	Nsco_Tails_biological_replicate2_apoptosis.39980.39980.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39980"	CDFTEDQTAEFKEAFQLFDR	C[+99]DFTEDQTAEFKEAFQLFDR	M	T	99.700000	97.400000	52.300000	95.100000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2576.180000	2.000000	-0.000440	-0.170000	2.000000	21.000000	440.204333	225.067067	55.093867	335.875250	145.617000	0.447300	NaN	NaN	NaN	553.229023	326.531193	95.798760	390.722990	197.728291	0.668660	NaN	NaN	NaN	471.976006	262.129742	0.000000	0.000000	0.000000	0.000000	0.083363	0.300824	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	sp|P60660-2|MYL6_HUMAN	MYL6_HUMAN	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	100.000000	0.044800	16942.800000	3.000000	6.000000	10.000000	Nsco_Tails_biological_replicate2_apoptosis.39971.39971.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39971"	CDFTEDQTAEFKEAFQLFDR	C[+99]DFTEDQTAEFKEAFQLFDR	M	T	99.700000	111.000000	50.400000	111.000000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2584.160000	2.000000	0.000410	0.160000	2.000000	21.000000	440.204333	225.067067	55.093867	335.875250	145.617000	0.447300	NaN	NaN	NaN	553.229023	326.531193	95.798760	390.722990	197.728291	0.668660	NaN	NaN	NaN	471.976006	262.129742	0.000000	0.000000	0.000000	0.000000	0.083243	0.299655	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	THUMP domain-containing protein 3 OS=Homo sapiens GN=THUMPD3 PE=1 SV=1	THUM3_HUMAN	THUM3_HUMAN	THUMP domain-containing protein 3 OS=Homo sapiens GN=THUMPD3 PE=1 SV=1	98.900000	0.004480	56985.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.37041.37041.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37041"	CDIEEATNQLLDVNLHEN	C[+99]DIEEATNQLLDVNLHEN	M	Q	99.700000	59.200000	49.200000	54.700000	Acetyl (+42), Carbamidomethyl (+57)	2167.970000	2.000000	-0.003300	-1.500000	2.000000	19.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.083300	95322.100000	11.000000	24.000000	36.000000	Nsco_Tails_biological_replicate_3_fraction6A.40315.40315.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40315"	CELLYEGPPDDEAAMGIK	C[+57]ELLYEGPPDDEAAMGIK	R	S	99.600000	61.200000	51.100000	59.600000	Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36)	2042.940000	2.000000	-0.005500	-2.700000	369.000000	386.000000	NaN	NaN	NaN	12.625850	NaN	0.267000	NaN	NaN	NaN	NaN	NaN	NaN	14.687625	NaN	0.399133	NaN	NaN	NaN	14.687625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.083300	95322.100000	11.000000	24.000000	36.000000	Nsco_Tails_biological_replicate_3_fraction6A.40185.40185.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40185"	CELLYEGPPDDEAAMGIK	C[+57]ELLYEGPPDDEAAMGIK	R	S	99.700000	68.500000	50.100000	68.500000	Carbamidomethyl (+57), Dimethyl (+28)	2034.920000	2.000000	-0.006200	-3.100000	369.000000	386.000000	NaN	NaN	NaN	12.625850	NaN	0.267000	NaN	NaN	NaN	NaN	NaN	NaN	14.687625	NaN	0.399133	NaN	NaN	NaN	14.687625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tyrosine-protein kinase ZAP-70 OS=Homo sapiens GN=ZAP70 PE=1 SV=1	sp|P43403|ZAP70_HUMAN	ZAP70_HUMAN	Tyrosine-protein kinase ZAP-70 OS=Homo sapiens GN=ZAP70 PE=1 SV=1	100.000000	0.003950	69856.300000	3.000000	3.000000	3.000000	Spectrum62105 scans:35888,	CGPAELCEFYSR	C[+85.1]GPAELC[+57]EFYSR	H	D	99.100000	46.000000	39.500000	41.700000	Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1497.630000	2.000000	0.000280	0.190000	78.000000	89.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	NUDT5_HUMAN	NUDT5_HUMAN	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	100.000000	0.025000	24309.800000	5.000000	12.000000	19.000000	Spectrum72956 scans:49898,	CIEFPAGLIDDGETPEAAALR	C[+57]IEFPAGLIDDGETPEAAALR	Y	E	98.900000	61.200000	50.700000	53.700000	Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2254.080000	2.000000	0.001700	0.750000	91.000000	111.000000	NaN	NaN	1.449200	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.519910	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	NUDT5_HUMAN	NUDT5_HUMAN	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	100.000000	0.025000	24309.800000	5.000000	12.000000	19.000000	Spectrum66261 scans:40598,	CIEFPAGLIDDGETPEAAALR	C[+57]IEFPAGLIDDGETPEAAALR	Y	E	99.100000	75.200000	51.300000	62.600000	Carbamidomethyl (+57), Dimethyl (+28), Label:13C(6)15N(4) (+10)	2282.110000	2.000000	-0.008100	-3.600000	91.000000	111.000000	NaN	NaN	1.449200	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.519910	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	NUDT5_HUMAN	NUDT5_HUMAN	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	100.000000	0.025000	24309.800000	5.000000	12.000000	19.000000	Spectrum72985 scans:49970,	CIEFPAGLIDDGETPEAAALR	C[+57]IEFPAGLIDDGETPEAAALR	Y	E	99.700000	76.500000	50.300000	68.000000	Carbamidomethyl (+57)	2244.070000	2.000000	-0.002200	-1.000000	91.000000	111.000000	NaN	NaN	1.449200	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.519910	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	NUDT5_HUMAN	NUDT5_HUMAN	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	100.000000	0.025000	24309.800000	5.000000	12.000000	19.000000	Spectrum72984 scans:49967,	CIEFPAGLIDDGETPEAAALR	C[+57]IEFPAGLIDDGETPEAAALR	Y	E	99.700000	89.900000	51.200000	77.500000	Carbamidomethyl (+57), Label:13C(6) (+6)	2250.090000	2.000000	-0.004100	-1.800000	91.000000	111.000000	NaN	NaN	1.449200	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.519910	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	NUDT5_HUMAN	NUDT5_HUMAN	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	100.000000	0.025000	24309.800000	5.000000	12.000000	19.000000	Spectrum66396 scans:40756,	CIEFPAGLIDDGETPEAAALR	C[+57]IEFPAGLIDDGETPEAAALR	Y	E	99.700000	108.000000	52.100000	90.900000	Carbamidomethyl (+57), Dimethyl (+28), Label:13C(6) (+6)	2278.120000	2.000000	-0.004900	-2.100000	91.000000	111.000000	NaN	NaN	1.449200	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.519910	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	NUDT5_HUMAN	NUDT5_HUMAN	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	100.000000	0.025000	24309.800000	5.000000	12.000000	19.000000	Spectrum66335 scans:40684,	CIEFPAGLIDDGETPEAAALR	C[+57]IEFPAGLIDDGETPEAAALR	Y	E	99.700000	105.000000	51.400000	95.500000	Carbamidomethyl (+57), Dimethyl (+28)	2272.100000	2.000000	-0.002000	-0.900000	91.000000	111.000000	NaN	NaN	1.449200	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.519910	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Proteasome assembly chaperone 2 OS=Homo sapiens GN=PSMG2 PE=1 SV=1	sp|Q969U7-2|PSMG2_HUMAN	PSMG2_HUMAN	Isoform 2 of Proteasome assembly chaperone 2 OS=Homo sapiens GN=PSMG2	92.900000	0.002880	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.31291.31291.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31291"	CIPEIDDSEFCIR	C[+85.1]IPEIDDSEFC[+57]IR	R	I	99.200000	50.700000	47.300000	50.700000	Carbamidomethyl (+57), Dimethyl (+28), Carbamidomethyl (+57)	1680.740000	2.000000	-0.005800	-3.400000	0.000000	0.000000	0.554200	0.256933	0.463367	0.992900	0.386600	1.790300	NaN	NaN	NaN	0.696494	0.372763	0.805715	1.155039	0.524951	2.676284	NaN	NaN	NaN	0.925766	0.448857	0.154554	0.106908	0.224112	0.153548	0.080829	0.294317	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome assembly chaperone 2 OS=Homo sapiens GN=PSMG2 PE=1 SV=1	tr|V9GZ55|V9GZ55_HUMAN	V9GZ55_HUMAN	Proteasome assembly chaperone 2 (Fragment) OS=Homo sapiens GN=PSMG2 PE=1 SV=1	97.500000	0.002500	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.43192.43192.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43192"	CIPEIDDSEFCIR	C[+85.1]IPEIDDSEFC[+57]IR	R	I	99.400000	48.600000	46.000000	40.600000	Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1662.720000	2.000000	-0.004600	-2.800000	0.000000	0.000000	0.554200	0.256933	0.463367	0.992900	0.386600	1.790300	NaN	NaN	NaN	0.696494	0.372763	0.805715	1.155039	0.524951	2.676284	NaN	NaN	NaN	0.925766	0.448857	0.154554	0.106908	0.224019	0.153484	0.080801	0.293570	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	RS8_HUMAN	RS8_HUMAN	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	100.000000	0.015800	24188.400000	4.000000	9.000000	12.000000	Spectrum20945 scans:19640,	CIVLIDSTPYR	C[+85.1]IVLIDSTPYR	N	Q	99.300000	60.500000	50.700000	38.100000	Carbamidomethyl (+57), Dimethyl (+28), Label:13C(6) (+6)	1369.740000	2.000000	-0.002200	-1.600000	100.000000	110.000000	0.584000	0.246500	0.432500	2.546800	0.500700	0.243400	NaN	NaN	NaN	0.733945	0.357626	0.752043	2.962687	0.679883	0.363854	NaN	NaN	NaN	1.848316	0.518755	0.345403	0.191723	0.500438	0.275137	0.080688	0.293198	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Aminopeptidase B OS=Homo sapiens GN=RNPEP PE=4 SV=1	A6NKB8_HUMAN	A6NKB8_HUMAN	Aminopeptidase B OS=Homo sapiens GN=RNPEP PE=4 SV=1	100.000000	0.005760	68152.300000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.15093.15093.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15093"	CLEPEGAAELR	C[+85.1]LEPEGAAELR	R	L	98.700000	48.400000	50.800000	13.900000	Carbamidomethyl (+57), Dimethyl (+28)	1271.620000	2.000000	-0.001900	-1.500000	69.000000	79.000000	0.454800	0.494900	0.809567	NaN	0.009850	1.285500	NaN	NaN	NaN	0.571572	0.718009	1.407697	NaN	0.013375	1.921668	NaN	NaN	NaN	0.571572	0.365692	NaN	0.488143	NaN	0.700229	1.000000	0.292457	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum52641 scans:24605,	CLYASVLTAQPR	C[+85.1]LYASVLTAQPR	R	L	99.600000	64.600000	50.500000	54.500000	Carbamidomethyl (+57), Dimethyl (+28), Label:13C(6)15N(4) (+10)	1415.750000	2.000000	-0.001500	-1.100000	728.000000	739.000000	1.150433	0.349200	0.379933	1.303100	0.546800	0.430250	NaN	NaN	NaN	1.445813	0.506625	0.660639	1.515894	0.742481	0.643172	NaN	NaN	NaN	1.480853	0.624553	0.015061	0.118807	0.021776	0.170356	0.080408	0.292088	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum52751 scans:24727,	CLYASVLTAQPR	C[+85.1]LYASVLTAQPR	R	L	99.600000	68.100000	50.400000	48.300000	Carbamidomethyl (+57), Dimethyl (+28)	1405.740000	2.000000	-0.002200	-1.500000	728.000000	739.000000	1.150433	0.349200	0.379933	1.303100	0.546800	0.430250	NaN	NaN	NaN	1.445813	0.506625	0.660639	1.515894	0.742481	0.643172	NaN	NaN	NaN	1.480853	0.624553	0.015061	0.118807	0.021667	0.170286	0.080240	0.290620	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum52684 scans:24653,	CLYASVLTAQPR	C[+85.1]LYASVLTAQPR	R	L	99.700000	68.500000	50.800000	59.500000	Carbamidomethyl (+57), Dimethyl (+28), Label:13C(6) (+6)	1411.760000	2.000000	-0.001800	-1.300000	728.000000	739.000000	1.150433	0.349200	0.379933	1.303100	0.546800	0.430250	NaN	NaN	NaN	1.445813	0.506625	0.660639	1.515894	0.742481	0.643172	NaN	NaN	NaN	1.480853	0.624553	0.015061	0.118807	0.021658	0.170215	0.080213	0.290255	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.044800	95322.100000	6.000000	8.000000	10.000000	Nsco_Tails_biological_replicate2_apoptosis.30579.30579.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30579"	CLYASVLTAQPR	C[+85.1]LYASVLTAQPR	R	L	99.700000	72.700000	53.500000	58.100000	Carbamidomethyl (+57)	1377.710000	2.000000	-0.000470	-0.340000	728.000000	739.000000	1.150433	0.349200	0.379933	1.303100	0.546800	0.430250	NaN	NaN	NaN	1.445813	0.506625	0.660639	1.515894	0.742481	0.643172	NaN	NaN	NaN	1.480853	0.624553	0.015061	0.118807	0.021649	0.170145	0.079880	0.289891	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Dihydropyrimidinase-related protein 2 OS=Homo sapiens GN=DPYSL2 PE=1 SV=1	DPYL2_HUMAN	DPYL2_HUMAN	Dihydropyrimidinase-related protein 2 OS=Homo sapiens GN=DPYSL2 PE=1 SV=1	100.000000	0.002500	62276.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.36854.36854.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36854"	CQIYEVLSVIR	C[+85.1]QIYEVLSVIR	D	D	99.400000	55.400000	55.100000	39.200000	Carbamidomethyl (+57), Dimethyl (+28), Label:13C(6)15N(4) (+10)	1416.770000	2.000000	-0.000570	-0.400000	179.000000	189.000000	3.458033	13.057000	3.315933	0.885200	1.161450	1.305350	NaN	NaN	NaN	4.345901	18.943321	5.765838	1.029751	1.577093	1.951342	NaN	NaN	NaN	2.687826	10.260207	0.351886	0.400419	0.505608	0.573208	0.079770	0.289529	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Protein arginine N-methyltransferase 3 OS=Homo sapiens GN=PRMT3 PE=1 SV=3	sp|O60678|ANM3_HUMAN	ANM3_HUMAN	Protein arginine N-methyltransferase 3 OS=Homo sapiens GN=PRMT3 PE=1 SV=3	97.200000	0.004480	59859.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.10473.10473.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10473"	CSLASGATGGR	C[+99]SLASGATGGR	M	G	99.300000	48.500000	46.900000	33.400000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1087.490000	2.000000	-0.001000	-0.930000	2.000000	12.000000	0.685800	5.124167	10.454067	1.196100	0.457950	0.388950	2.502571	NaN	9.497829	0.861883	7.434230	18.177824	1.391421	0.621834	0.581434	1.673793	NaN	4.551384	1.309032	4.028032	0.031495	0.446874	0.045235	0.639181	0.005437	0.286304	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L12 OS=Homo sapiens GN=RPL12 PE=1 SV=1	sp|P30050|RL12_HUMAN	RL12_HUMAN	60S ribosomal protein L12 OS=Homo sapiens GN=RPL12 PE=1 SV=1	100.000000	0.002630	17801.100000	2.000000	2.000000	2.000000	Spectrum5302 scans:23299,	CTGGEVGATSALAPK	C[+85.1]TGGEVGATSALAPK	R	I	98.700000	54.200000	50.400000	50.900000	Carbamidomethyl (+57), Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1481.760000	2.000000	-0.002400	-1.600000	17.000000	31.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	RL22_HUMAN	RL22_HUMAN	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	100.000000	0.028800	14769.300000	3.000000	7.000000	10.000000	Nsco_Tails_biological_replicate1_apoptosis.40426.40426.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40426"	CTHPVEDGIMDAANFEQFLQER	C[+85.1]THPVEDGIMDAANFEQFLQER	D	I	98.900000	66.600000	50.400000	66.600000	Carbamidomethyl (+57), Dimethyl (+28)	2634.180000	3.000000	-0.008100	-3.100000	25.000000	46.000000	0.393800	0.059900	0.152200	0.914200	0.402850	0.439600	NaN	NaN	NaN	0.494910	0.086904	0.264650	1.063487	0.547016	0.657149	NaN	NaN	NaN	0.779199	0.316960	0.222715	0.399699	0.319612	0.570999	0.079660	0.285597	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	RL22_HUMAN	RL22_HUMAN	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	100.000000	0.057600	14769.300000	4.000000	11.000000	23.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38412.38412.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38412"	CTHPVEDGIMDAANFEQFLQER	C[+85.1]THPVEDGIMDAANFEQFLQER	D	I	99.600000	75.100000	50.000000	75.100000	Carbamidomethyl (+57), Dimethyl (+28), Oxidation (+16)	2650.180000	3.000000	-0.001700	-0.660000	25.000000	46.000000	0.393800	0.059900	0.152200	0.914200	0.402850	0.439600	NaN	NaN	NaN	0.494910	0.086904	0.264650	1.063487	0.547016	0.657149	NaN	NaN	NaN	0.779199	0.316960	0.222715	0.399699	0.319480	0.570764	0.079633	0.285245	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	RL22_HUMAN	RL22_HUMAN	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	100.000000	0.067200	14769.300000	3.000000	11.000000	15.000000	Nsco_Tails_biological_replicate2_apoptosis.34648.34648.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34648"	CTHPVEDGIMDAANFEQFLQER	C[+85.1]THPVEDGIMDAANFEQFLQER	D	I	99.700000	87.000000	51.000000	87.000000	Carbamidomethyl (+57), Dimethyl (+28), Label:13C(6)15N(4) (+10)	2644.190000	3.000000	-0.005000	-1.900000	25.000000	46.000000	0.393800	0.059900	0.152200	0.914200	0.402850	0.439600	NaN	NaN	NaN	0.494910	0.086904	0.264650	1.063487	0.547016	0.657149	NaN	NaN	NaN	0.779199	0.316960	0.222715	0.399699	0.319348	0.570529	0.079605	0.284893	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.009440	50123.200000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.46640.46640.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46640"	CVESFSDYPPLGR	C[+85.1]VESFSDYPPLGR	M	F	99.400000	55.000000	49.600000	44.100000	Carbamidomethyl (+57), Dimethyl (+28)	1553.720000	2.000000	-0.003000	-2.000000	411.000000	423.000000	8.807833	1.319633	0.631300	0.589700	1.496650	3.616900	NaN	NaN	NaN	11.069289	1.914547	1.097722	0.685997	2.032249	5.406832	NaN	NaN	NaN	5.877643	1.973398	0.456396	0.018980	0.654149	0.027081	0.079578	0.284193	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.031600	50123.200000	9.000000	17.000000	24.000000	Spectrum53348 scans:25383,	CVESFSDYPPLGR	C[+85.1]VESFSDYPPLGR	M	F	98.700000	56.100000	44.200000	48.600000	Carbamidomethyl (+57)	1525.680000	2.000000	-0.004000	-2.600000	411.000000	423.000000	8.807833	1.319633	0.631300	0.589700	1.496650	3.616900	NaN	NaN	NaN	11.069289	1.914547	1.097722	0.685997	2.032249	5.406832	NaN	NaN	NaN	5.877643	1.973398	0.456396	0.018980	0.653879	0.027069	0.079360	0.283845	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.031600	50123.200000	9.000000	17.000000	24.000000	Spectrum53467 scans:25514,	CVESFSDYPPLGR	C[+85.1]VESFSDYPPLGR	M	F	98.900000	51.300000	45.900000	45.000000	Carbamidomethyl (+57), Label:13C(6) (+6)	1531.700000	2.000000	-0.002400	-1.600000	411.000000	423.000000	8.807833	1.319633	0.631300	0.589700	1.496650	3.616900	NaN	NaN	NaN	11.069289	1.914547	1.097722	0.685997	2.032249	5.406832	NaN	NaN	NaN	5.877643	1.973398	0.456396	0.018980	0.653609	0.027058	0.079332	0.283497	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.031600	50123.200000	9.000000	17.000000	24.000000	Spectrum64008 scans:38071,	CVESFSDYPPLGR	C[+85.1]VESFSDYPPLGR	M	F	99.200000	50.200000	44.900000	45.000000	Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1535.700000	2.000000	-0.000460	-0.300000	411.000000	423.000000	8.807833	1.319633	0.631300	0.589700	1.496650	3.616900	NaN	NaN	NaN	11.069289	1.914547	1.097722	0.685997	2.032249	5.406832	NaN	NaN	NaN	5.877643	1.973398	0.456396	0.018980	0.653340	0.027047	0.079115	0.283150	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.031600	50123.200000	9.000000	17.000000	24.000000	Spectrum54299 scans:26442,	CVESFSDYPPLGR	C[+85.1]VESFSDYPPLGR	M	F	99.700000	68.700000	46.400000	60.700000	Carbamidomethyl (+57), Dimethyl (+28), Label:13C(6)15N(4) (+10)	1563.730000	2.000000	-0.001100	-0.710000	411.000000	423.000000	8.807833	1.319633	0.631300	0.589700	1.496650	3.616900	NaN	NaN	NaN	11.069289	1.914547	1.097722	0.685997	2.032249	5.406832	NaN	NaN	NaN	5.877643	1.973398	0.456396	0.018980	0.652801	0.027036	0.079061	0.282804	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Phosphoglycerate kinase 1 OS=Homo sapiens GN=PGK1 PE=1 SV=3	PGK1_HUMAN	PGK1_HUMAN	Phosphoglycerate kinase 1 OS=Homo sapiens GN=PGK1 PE=1 SV=3	100.000000	0.004670	44597.300000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.59377.59377.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=59377"	CVGPEVEKACANPAAGSVILLENLR	C[+85.1]VGPEVEKAC[+57]ANPAAGSVILLENLR	D	F	99.700000	91.900000	60.600000	79.300000	Carbamidomethyl (+57), Dimethyl (+28), Dimethyl (+28), Carbamidomethyl (+57)	2722.410000	3.000000	-0.003900	-1.400000	99.000000	123.000000	130.396433	77.994267	0.597200	NaN	3.063150	3.978400	NaN	NaN	NaN	163.876377	113.155431	1.038428	NaN	4.159346	5.947231	NaN	NaN	NaN	163.876377	58.657388	NaN	0.249065	NaN	0.354640	1.000000	0.282114	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Phosphoglycerate kinase 1 OS=Homo sapiens GN=PGK1 PE=1 SV=3	PGK1_HUMAN	PGK1_HUMAN	Phosphoglycerate kinase 1 OS=Homo sapiens GN=PGK1 PE=1 SV=3	100.000000	0.004670	44597.300000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.59405.59405.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=59405"	CVGPEVEKACANPAAGSVILLENLR	C[+85.1]VGPEVEKAC[+57]ANPAAGSVILLENLR	D	F	99.700000	99.500000	61.300000	84.500000	Carbamidomethyl (+57), Dimethyl (+28), Dimethyl:2H(4) (+32), Carbamidomethyl (+57), Label:13C(6) (+6)	2732.460000	3.000000	-0.005000	-1.800000	99.000000	123.000000	130.396433	77.994267	0.597200	NaN	3.063150	3.978400	NaN	NaN	NaN	163.876377	113.155431	1.038428	NaN	4.159346	5.947231	NaN	NaN	NaN	163.876377	58.657388	NaN	0.249065	NaN	0.354494	1.000000	0.280744	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HSPA4L PE=1 SV=3	HS74L_HUMAN	HS74L_HUMAN	Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HSPA4L PE=1 SV=3	100.000000	0.005010	94496.500000	1.000000	1.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40916.40916.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40916"	CVISIPSFFTDAER	C[+85.1]VISIPSFFTDAER	D	R	99.700000	60.200000	53.400000	52.900000	Carbamidomethyl (+57), Dimethyl (+28)	1668.820000	2.000000	-0.000890	-0.530000	140.000000	153.000000	0.729000	0.264000	0.362200	0.864900	0.327300	0.376600	NaN	NaN	NaN	0.916174	0.383016	0.629804	1.006136	0.444429	0.562972	NaN	NaN	NaN	0.961155	0.413723	0.029771	0.047164	0.042513	0.067101	0.078685	0.280065	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2	PAPS1_HUMAN	PAPS1_HUMAN	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2	100.000000	0.005010	70815.200000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33334.33334.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33334"	CVQQVVELLQER	C[+85.1]VQQVVELLQER	D	D	99.700000	63.000000	55.300000	51.600000	Carbamidomethyl (+57), Dimethyl (+28)	1527.810000	2.000000	-0.001400	-0.890000	212.000000	223.000000	1.738567	1.053300	0.574733	0.806550	0.472600	0.585050	NaN	NaN	NaN	2.184952	1.528146	0.999362	0.938258	0.641727	0.874580	NaN	NaN	NaN	1.561605	1.084937	0.241783	0.246895	0.345120	0.350830	0.078658	0.279051	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.016500	95322.100000	6.000000	7.000000	7.000000	NSco_TAILS_20150124_Protein_complex_100Kda.37731.37731.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37731"	CVSGVCVQTETVLR	C[+85.1]VSGVC[+57]VQTETVLR	D	Q	99.200000	66.300000	53.300000	58.300000	Carbamidomethyl (+57), Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1644.810000	2.000000	-0.015000	-9.100000	131.000000	144.000000	1.246667	0.098400	0.223600	1.279550	NaN	NaN	3.750229	NaN	NaN	1.566755	0.142760	0.388802	1.488498	NaN	NaN	2.508262	NaN	NaN	1.854505	0.142760	0.029827	NaN	0.042558	NaN	0.005354	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	HSP74_HUMAN	HSP74_HUMAN	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	100.000000	0.007510	94313.900000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.28070.28070.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28070"	CVVSVPCFYTDAER	C[+85.1]VVSVPC[+57]FYTDAER	D	R	99.700000	65.800000	49.100000	53.200000	Carbamidomethyl (+57), Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1739.790000	2.000000	-0.002400	-1.400000	140.000000	153.000000	0.699867	0.535700	0.752633	0.710250	0.462650	0.651400	NaN	NaN	NaN	0.879561	0.777203	1.308700	0.826232	0.628216	0.973765	NaN	NaN	NaN	0.852897	0.702710	0.019896	0.067236	0.028377	0.095462	0.078498	0.278379	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	HSP74_HUMAN	HSP74_HUMAN	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	100.000000	0.013400	94313.900000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.24436.24436.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24436"	CVVSVPCFYTDAER	C[+85.1]VVSVPC[+57]FYTDAER	D	R	99.700000	82.200000	48.800000	73.500000	Carbamidomethyl (+57), Dimethyl (+28), Carbamidomethyl (+57)	1729.780000	2.000000	-0.001900	-1.100000	140.000000	153.000000	0.699867	0.535700	0.752633	0.710250	0.462650	0.651400	NaN	NaN	NaN	0.879561	0.777203	1.308700	0.826232	0.628216	0.973765	NaN	NaN	NaN	0.852897	0.702710	0.019896	0.067236	0.028365	0.095423	0.078418	0.277378	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform SRP40-4 of Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5	sp|Q13243|SRSF5_HUMAN	SRSF5_HUMAN	Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5 PE=1 SV=1	100.000000	0.007900	31246.800000	2.000000	4.000000	6.000000	Spectrum10348 scans:37148,	DADDAVYELDGKELCSER	D[+28]ADDAVYELDGKELC[+57]SER	R	V	99.700000	48.600000	46.900000	43.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2157.980000	3.000000	-0.002400	-1.100000	49.000000	66.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 OS=Homo sapiens GN=NUCKS1 PE=1 SV=1	sp|Q9H1E3|NUCKS_HUMAN	NUCKS_HUMAN	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 OS=Homo sapiens GN=NUCKS1 PE=1 SV=1	100.000000	0.007900	27278.700000	3.000000	5.000000	6.000000	Spectrum24866 scans:4000,	DADEDYGR	D[+28]ADEDYGR	D	D	99.000000	49.400000	39.700000	35.600000	Dimethyl (+28), Label:13C(6) (+6)	973.410000	2.000000	-0.000110	-0.110000	21.000000	28.000000	0.541967	0.141033	0.284933	1.910750	0.281350	0.151450	NaN	NaN	NaN	0.681119	0.204614	0.495450	2.222772	0.382035	0.226400	NaN	NaN	NaN	1.451945	0.293325	0.310705	0.186967	0.442589	0.265131	0.077995	0.276384	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	sp|Q01130-2|SRSF2_HUMAN	SRSF2_HUMAN	Isoform 2 of Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2	100.000000	0.004720	0.000000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.57715.57715.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=57715"	DAEDAMDAMDGAVLDGR	D[+28]AEDAMDAMDGAVLDGR	R	E	99.700000	71.900000	43.400000	71.900000	Dimethyl (+28)	1778.750000	2.000000	-0.000022	-0.012000	0.000000	0.000000	NaN	0.534900	1.440300	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.776042	2.504434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.776042	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	SRSF2_HUMAN	SRSF2_HUMAN	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	100.000000	0.009330	25459.100000	3.000000	3.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.38297.38297.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38297"	DAEDAMDAMDGAVLDGR	D[+28]AEDAMDAMDGAVLDGR	R	E	99.700000	86.000000	40.500000	31.700000	Dimethyl (+28), Oxidation (+16)	1794.730000	2.000000	-0.015000	-8.300000	67.000000	83.000000	NaN	0.534900	1.440300	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.776042	2.504434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.776042	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	sp|Q07955-3|SRSF1_HUMAN	SRSF1_HUMAN	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	100.000000	0.017100	22442.200000	5.000000	9.000000	13.000000	Spectrum17003 scans:7407,	DAEDAVYGR	D[+28]AEDAVYGR	R	D	99.000000	48.500000	45.300000	27.600000	Dimethyl (+28), Label:13C(6) (+6)	1028.490000	2.000000	-0.000071	-0.069000	66.000000	74.000000	0.379633	0.357500	0.755033	1.564150	0.397450	0.256250	2.132100	7.359114	7.564786	0.477106	0.518667	1.312873	1.819572	0.539684	0.383063	1.426011	3.134177	3.625065	1.240896	1.397509	0.089476	0.248815	0.127299	0.352404	0.005300	0.018622	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	sp|Q07955-3|SRSF1_HUMAN	SRSF1_HUMAN	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	100.000000	0.017100	22442.200000	5.000000	9.000000	13.000000	Spectrum17059 scans:7518,	DAEDAVYGR	D[+28]AEDAVYGR	R	D	99.400000	50.800000	43.300000	30.400000	Dimethyl (+28)	1022.470000	2.000000	-0.000560	-0.550000	66.000000	74.000000	0.379633	0.357500	0.755033	1.564150	0.397450	0.256250	2.132100	7.359114	7.564786	0.477106	0.518667	1.312873	1.819572	0.539684	0.383063	1.426011	3.134177	3.625065	1.240896	1.397509	0.089476	0.248815	0.127143	0.352260	0.005293	0.018600	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2	RL10A_HUMAN	RL10A_HUMAN	60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2	100.000000	0.007900	24814.000000	2.000000	3.000000	6.000000	Spectrum13014 scans:48749,	DAFLASESLIKQIPR	D[+28]AFLASESLIKQIPR	Y	I	99.700000	60.000000	52.200000	49.400000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1761.020000	3.000000	0.003600	2.100000	108.000000	122.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum47876 scans:19118,	DAGLHCLELGH	D[+28]AGLHC[+57]LELGH	R	T	99.700000	41.800000	46.300000	25.500000	Dimethyl (+28), Carbamidomethyl (+57)	1248.590000	3.000000	0.000330	0.260000	970.000000	980.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Aspartate aminotransferase, mitochondrial OS=Homo sapiens GN=GOT2 PE=1 SV=3	sp|P00505-2|AATM_HUMAN	AATM_HUMAN	Isoform 2 of Aspartate aminotransferase, mitochondrial OS=Homo sapiens GN=GOT2	100.000000	0.005760	0.000000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.10310.10310.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10310"	DAGMQLQGYR	D[+28]AGMQLQGYR	R	Y	98.900000	63.300000	49.400000	48.000000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1191.570000	2.000000	0.007100	5.900000	0.000000	0.000000	0.459933	0.416467	0.909833	2.509650	6.545750	6.998750	NaN	NaN	19.018386	0.578024	0.604217	1.582044	2.919471	8.888248	10.462292	NaN	NaN	9.113660	1.748747	4.746232	0.375565	0.456789	0.533011	0.645909	0.077369	0.270565	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Calcium/calmodulin-dependent protein kinase type IV OS=Homo sapiens GN=CAMK4 PE=1 SV=1	KCC4_HUMAN	KCC4_HUMAN	Calcium/calmodulin-dependent protein kinase type IV OS=Homo sapiens GN=CAMK4 PE=1 SV=1	100.000000	0.011500	51908.200000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.47179.47179.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47179"	DALSDFFEVESELGR	D[+28]ALSDFFEVESELGR	R	G	99.700000	109.000000	51.700000	100.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1750.820000	2.000000	-0.004100	-2.400000	40.000000	54.000000	0.698400	0.294900	0.422200	4.264350	32.804350	34.939600	NaN	NaN	NaN	0.877718	0.427846	0.734133	4.960710	44.543893	52.230511	NaN	NaN	NaN	2.919214	22.485870	0.388514	0.472779	0.551163	0.668246	0.077214	0.270249	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Calcium/calmodulin-dependent protein kinase type IV OS=Homo sapiens GN=CAMK4 PE=1 SV=1	KCC4_HUMAN	KCC4_HUMAN	Calcium/calmodulin-dependent protein kinase type IV OS=Homo sapiens GN=CAMK4 PE=1 SV=1	100.000000	0.011500	51908.200000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.47168.47168.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47168"	DALSDFFEVESELGR	D[+28]ALSDFFEVESELGR	R	G	99.700000	110.000000	51.600000	94.900000	Dimethyl (+28)	1740.820000	2.000000	-0.002300	-1.300000	40.000000	54.000000	0.698400	0.294900	0.422200	4.264350	32.804350	34.939600	NaN	NaN	NaN	0.877718	0.427846	0.734133	4.960710	44.543893	52.230511	NaN	NaN	NaN	2.919214	22.485870	0.388514	0.472779	0.550938	0.667159	0.077111	0.269934	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4	TCPD_HUMAN	TCPD_HUMAN	T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4	100.000000	0.001320	57907.900000	1.000000	1.000000	1.000000	Spectrum20907 scans:19324,	DALSDLALH	D[+28]ALSDLALH	R	F	99.400000	60.700000	47.600000	47.200000	Dimethyl (+28)	981.510000	2.000000	0.000500	0.510000	307.000000	315.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4	sp|Q15393|SF3B3_HUMAN	SF3B3_HUMAN	Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4	100.000000	0.007510	135561.400000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.24969.24969.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24969"	DALVQVYPDGIR	D[+28]ALVQVYPDGIR	D	H	99.500000	67.000000	54.800000	44.400000	Dimethyl (+28), Label:13C(6) (+6)	1378.750000	2.000000	-0.010000	-7.200000	514.000000	525.000000	0.541133	0.285467	0.549233	0.748900	0.459600	0.626550	NaN	NaN	NaN	0.680072	0.414160	0.955022	0.871194	0.624075	0.936617	NaN	NaN	NaN	0.775633	0.519117	0.078041	0.127003	0.110576	0.179073	0.077060	0.268992	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4	sp|Q15393|SF3B3_HUMAN	SF3B3_HUMAN	Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4	100.000000	0.007510	135561.400000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.24944.24944.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24944"	DALVQVYPDGIR	D[+28]ALVQVYPDGIR	D	H	99.700000	84.900000	54.800000	63.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1382.740000	2.000000	0.000013	0.009500	514.000000	525.000000	0.541133	0.285467	0.549233	0.748900	0.459600	0.626550	NaN	NaN	NaN	0.680072	0.414160	0.955022	0.871194	0.624075	0.936617	NaN	NaN	NaN	0.775633	0.519117	0.078041	0.127003	0.110486	0.179000	0.077034	0.268680	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	PDIA1_HUMAN	PDIA1_HUMAN	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	100.000000	0.022400	57100.100000	4.000000	9.000000	17.000000	Spectrum29921 scans:15133,	DAPEEEDHVLVLR	D[+28]APEEEDHVLVLR	A	K	99.300000	34.700000	49.500000	32.300000	Acetyl (+42), Label:13C(6) (+6)	1568.780000	3.000000	-0.000460	-0.300000	18.000000	30.000000	0.458033	0.413700	0.901533	0.843450	0.744200	0.882300	2.662857	1.220429	2.058557	0.575636	0.600203	1.567611	0.981184	1.010523	1.318933	1.780997	0.519769	0.986466	1.112605	0.710165	0.088113	0.042866	0.124644	0.060392	0.005228	0.018298	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	PDIA1_HUMAN	PDIA1_HUMAN	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	100.000000	0.022400	57100.100000	4.000000	9.000000	17.000000	Spectrum29945 scans:15171,	DAPEEEDHVLVLR	D[+28]APEEEDHVLVLR	A	K	99.700000	124.000000	50.600000	87.700000	Dimethyl (+28), Label:13C(6) (+6)	1554.800000	2.000000	-0.002000	-1.300000	18.000000	30.000000	0.458033	0.413700	0.901533	0.843450	0.744200	0.882300	2.662857	1.220429	2.058557	0.575636	0.600203	1.567611	0.981184	1.010523	1.318933	1.780997	0.519769	0.986466	1.112605	0.710165	0.088113	0.042866	0.124593	0.060368	0.005226	0.018277	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	PDIA1_HUMAN	PDIA1_HUMAN	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	100.000000	0.022400	57100.100000	4.000000	9.000000	17.000000	Spectrum48612 scans:19959,	DAPEEEDHVLVLR	D[+28]APEEEDHVLVLR	A	K	99.700000	142.000000	50.000000	109.000000	Dimethyl (+28)	1548.780000	2.000000	-0.001100	-0.720000	18.000000	30.000000	0.458033	0.413700	0.901533	0.843450	0.744200	0.882300	2.662857	1.220429	2.058557	0.575636	0.600203	1.567611	0.981184	1.010523	1.318933	1.780997	0.519769	0.986466	1.112605	0.710165	0.088113	0.042866	0.124542	0.060343	0.005224	0.018255	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	PDIA1_HUMAN	PDIA1_HUMAN	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	100.000000	0.031300	57100.100000	3.000000	7.000000	7.000000	Nsco_Tails_biological_replicate2_apoptosis.16409.16409.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16409"	DAPEEEDHVLVLR	D[+28]APEEEDHVLVLR	A	K	99.700000	123.000000	54.000000	87.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1558.780000	2.000000	-0.004200	-2.700000	18.000000	30.000000	0.458033	0.413700	0.901533	0.843450	0.744200	0.882300	2.662857	1.220429	2.058557	0.575636	0.600203	1.567611	0.981184	1.010523	1.318933	1.780997	0.519769	0.986466	1.112605	0.710165	0.088113	0.042866	0.124340	0.060319	0.005223	0.018234	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	ANX11_HUMAN	ANX11_HUMAN	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	100.000000	0.006590	54373.700000	3.000000	5.000000	5.000000	Spectrum43885 scans:14532,	DAQELYAAGENR	D[+28]AQELYAAGENR	R	L	99.500000	72.400000	46.000000	51.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1373.640000	2.000000	-0.004400	-3.200000	360.000000	371.000000	0.351000	1.473900	6.548300	0.392700	0.199800	4.601200	NaN	NaN	NaN	0.441121	2.138360	11.386368	0.456827	0.271302	6.878242	NaN	NaN	NaN	0.448974	1.204831	0.011134	0.419659	0.015705	0.590278	0.075748	0.267129	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	ANX11_HUMAN	ANX11_HUMAN	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	100.000000	0.006590	54373.700000	3.000000	5.000000	5.000000	Spectrum43907 scans:14558,	DAQELYAAGENR	D[+28]AQELYAAGENR	R	L	99.700000	70.500000	47.200000	54.400000	Dimethyl (+28), Label:13C(6) (+6)	1369.660000	2.000000	-0.000290	-0.210000	360.000000	371.000000	0.351000	1.473900	6.548300	0.392700	0.199800	4.601200	NaN	NaN	NaN	0.441121	2.138360	11.386368	0.456827	0.271302	6.878242	NaN	NaN	NaN	0.448974	1.204831	0.011134	0.419659	0.015699	0.590039	0.075723	0.266820	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	ANX11_HUMAN	ANX11_HUMAN	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	100.000000	0.006590	54373.700000	3.000000	5.000000	5.000000	Spectrum43908 scans:14559,	DAQELYAAGENR	D[+28]AQELYAAGENR	R	L	99.700000	71.000000	45.900000	52.800000	Dimethyl (+28)	1363.640000	2.000000	-0.000420	-0.310000	360.000000	371.000000	0.351000	1.473900	6.548300	0.392700	0.199800	4.601200	NaN	NaN	NaN	0.441121	2.138360	11.386368	0.456827	0.271302	6.878242	NaN	NaN	NaN	0.448974	1.204831	0.011134	0.419659	0.015693	0.589800	0.075698	0.265291	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2	PSB3_HUMAN	PSB3_HUMAN	Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2	100.000000	0.001320	22931.600000	1.000000	1.000000	1.000000	Spectrum20424 scans:16060,	DAVSGMGVIVH	D[+28]AVSGMGVIVH	R	I	99.700000	69.600000	48.200000	48.400000	Dimethyl (+28)	1111.570000	2.000000	-0.000240	-0.220000	178.000000	188.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2	H4_HUMAN	H4_HUMAN	Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2	100.000000	0.010500	11349.700000	3.000000	5.000000	8.000000	Spectrum2531 scans:16178,	DAVTYTEH	D[+28]AVTYTEH	R	A	99.000000	50.500000	42.700000	40.800000	Dimethyl (+28)	962.430000	2.000000	0.000160	0.160000	69.000000	76.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	sp|P28074|PSB5_HUMAN	PSB5_HUMAN	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	97.300000	0.013200	28463.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction2A.18636.18636.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18636"	DAYSGGAVNLY	D[+28]AYSGGAVNLY	R	H	99.700000	68.800000	48.400000	60.000000	Dimethyl (+28)	1156.540000	2.000000	0.000460	0.400000	226.000000	236.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.007000	49956.400000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.14744.14744.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14744"	DCGLTEAR	D[+28]C[+57]GLTEAR	D	C	99.000000	53.300000	46.600000	31.800000	Dimethyl (+28), Carbamidomethyl (+57)	948.430000	2.000000	0.000300	0.320000	37.000000	44.000000	0.704467	0.539567	0.772467	8.536600	38.843550	2.824000	4.124986	3.834443	5.859271	0.885342	0.782813	1.343187	9.930609	52.744314	4.221541	2.758911	1.633053	2.807778	4.524954	18.386726	0.242369	0.294643	0.341046	0.413430	0.005134	0.017985	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	SAM and SH3 domain-containing protein 3 OS=Homo sapiens GN=SASH3 PE=1 SV=2	SASH3_HUMAN	SASH3_HUMAN	SAM and SH3 domain-containing protein 3 OS=Homo sapiens GN=SASH3 PE=1 SV=2	99.900000	0.002630	41578.500000	1.000000	1.000000	2.000000	Spectrum66590 scans:40979,	DDAELAGTEEQLQGLSLAGAP	D[+28]DAELAGTEEQLQGLSLAGAP	R	-	99.700000	68.800000	50.600000	52.300000	Dimethyl (+28)	2112.020000	2.000000	-0.001100	-0.510000	360.000000	380.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	XRCC5_HUMAN	XRCC5_HUMAN	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	100.000000	0.026300	82689.100000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction2A.27262.27262.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27262"	DDEAAAVALSSLIH	D[+28]DEAAAVALSSLIH	R	A	99.700000	88.400000	53.500000	67.200000	Dimethyl (+28)	1438.730000	2.000000	-0.000700	-0.490000	369.000000	382.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.017500	92453.700000	2.000000	6.000000	7.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.22554.22554.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22554"	DDEVDVDGTVEEDLGKSR	D[+28]DEVDVDGTVEEDLGKSR	A	E	99.700000	104.000000	54.400000	94.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2042.990000	2.000000	-0.003900	-1.900000	22.000000	39.000000	190.387400	98.846533	0.523967	233.086350	173.546350	0.747700	NaN	NaN	2.604571	239.270328	143.408260	0.911088	271.148873	235.652590	1.117722	NaN	NaN	1.248117	255.209601	189.530425	0.000000	0.000000	0.000000	0.000000	0.075011	0.259925	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.017500	92453.700000	2.000000	6.000000	7.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.22565.22565.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22565"	DDEVDVDGTVEEDLGKSR	D[+28]DEVDVDGTVEEDLGKSR	A	E	99.700000	106.000000	52.900000	104.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2050.970000	2.000000	-0.001100	-0.530000	22.000000	39.000000	190.387400	98.846533	0.523967	233.086350	173.546350	0.747700	NaN	NaN	2.604571	239.270328	143.408260	0.911088	271.148873	235.652590	1.117722	NaN	NaN	1.248117	255.209601	189.530425	0.000000	0.000000	0.000000	0.000000	0.074986	0.259633	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.040300	92453.700000	3.000000	7.000000	9.000000	Nsco_Tails_biological_replicate2_apoptosis.19750.19750.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19750"	DDEVDVDGTVEEDLGKSR	D[+28]DEVDVDGTVEEDLGKSR	A	E	99.700000	113.000000	51.600000	101.000000	Dimethyl (+28), Dimethyl (+28)	2032.940000	2.000000	-0.003600	-1.800000	22.000000	39.000000	190.387400	98.846533	0.523967	233.086350	173.546350	0.747700	NaN	NaN	2.604571	239.270328	143.408260	0.911088	271.148873	235.652590	1.117722	NaN	NaN	1.248117	255.209601	189.530425	0.000000	0.000000	0.000000	0.000000	0.074914	0.259342	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	sp|O00410|IPO5_HUMAN	IPO5_HUMAN	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	100.000000	0.010000	123614.200000	4.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.20516.20516.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20516"	DDFDSNAVAGESALDR	D[+28]DFDSNAVAGESALDR	D	M	99.700000	94.700000	46.500000	92.400000	Dimethyl (+28)	1708.750000	2.000000	-0.008700	-5.100000	330.000000	345.000000	NaN	NaN	24.107667	0.137100	0.182100	1.132850	NaN	NaN	NaN	NaN	NaN	41.919087	0.159488	0.247267	1.693475	NaN	NaN	NaN	0.159488	0.247267	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1	sp|P36543|VATE1_HUMAN	VATE1_HUMAN	V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1	100.000000	0.007900	26128.200000	3.000000	4.000000	6.000000	Spectrum70790 scans:46117,	DDLITDLLNEAKQR	D[+28]DLITDLLNEAKQR	R	L	99.600000	41.100000	52.500000	29.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1708.960000	3.000000	0.000220	0.130000	88.000000	101.000000	97.388100	44.216400	0.439200	10.554100	NaN	NaN	NaN	NaN	NaN	122.392987	64.149918	0.763693	12.277563	NaN	NaN	NaN	NaN	NaN	67.335275	64.149918	0.000000	NaN	0.000000	NaN	0.074648	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.027700	40405.300000	7.000000	17.000000	21.000000	Spectrum63420 scans:37418,	DDLLGFALR	D[+28]DLLGFALR	R	E	98.900000	52.300000	48.600000	23.600000	Dimethyl (+28), Label:13C(6) (+6)	1052.600000	2.000000	0.000009	0.008800	214.000000	222.000000	0.475433	0.226300	0.482167	0.927400	1.735150	1.291700	NaN	NaN	NaN	0.597503	0.328320	0.838405	1.078843	2.356100	1.930937	NaN	NaN	NaN	0.838173	1.342210	0.178008	0.411855	0.249671	0.576033	0.074624	0.258473	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.027700	40405.300000	7.000000	17.000000	21.000000	Spectrum63510 scans:37518,	DDLLGFALR	D[+28]DLLGFALR	R	E	99.400000	58.600000	48.600000	28.300000	Dimethyl (+28)	1046.580000	2.000000	0.000240	0.230000	214.000000	222.000000	0.475433	0.226300	0.482167	0.927400	1.735150	1.291700	NaN	NaN	NaN	0.597503	0.328320	0.838405	1.078843	2.356100	1.930937	NaN	NaN	NaN	0.838173	1.342210	0.178008	0.411855	0.249570	0.575569	0.074600	0.258185	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.027700	40405.300000	7.000000	17.000000	21.000000	Spectrum63551 scans:37563,	DDLLGFALR	D[+28]DLLGFALR	R	E	99.600000	64.300000	48.900000	34.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1056.580000	2.000000	0.000029	0.028000	214.000000	222.000000	0.475433	0.226300	0.482167	0.927400	1.735150	1.291700	NaN	NaN	NaN	0.597503	0.328320	0.838405	1.078843	2.356100	1.930937	NaN	NaN	NaN	0.838173	1.342210	0.178008	0.411855	0.249469	0.575337	0.074456	0.257897	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Guanine nucleotide-binding protein G(i) subunit alpha-2 OS=Homo sapiens GN=GNAI2	sp|P04899-3|GNAI2_HUMAN	GNAI2_HUMAN	Isoform 3 of Guanine nucleotide-binding protein G(i) subunit alpha-2 OS=Homo sapiens GN=GNAI2	94.400000	0.001320	36448.200000	1.000000	1.000000	1.000000	Spectrum22833 scans:6377,	DDLSGVIR	NaN	P	R	98.700000	48.500000	47.800000	0.000000	Label:13C(6) (+6)	879.480000	2.000000	-0.000210	-0.240000	85.000000	92.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLST PE=1 SV=4	ODO2_HUMAN	ODO2_HUMAN	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLST PE=1 SV=4	97.000000	0.002360	48737.200000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.52116.52116.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=52116"	DDLVTVKTPAFAESVTEGDVR	D[+28]DLVTVKTPAFAESVTEGDVR	K	W	99.600000	74.500000	58.700000	59.800000	Dimethyl (+28), Dimethyl (+28)	2304.190000	3.000000	0.003000	1.300000	68.000000	88.000000	12.641667	5.093500	0.494633	111.634200	67.181200	0.598600	NaN	NaN	NaN	15.887479	7.389738	0.860082	129.863836	91.223029	0.894835	NaN	NaN	NaN	72.875657	49.306384	0.000000	0.094851	0.000000	0.132394	0.074336	0.257323	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLST PE=1 SV=4	ODO2_HUMAN	ODO2_HUMAN	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLST PE=1 SV=4	98.800000	0.002500	48737.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.28123.28123.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28123"	DDLVTVKTPAFAESVTEGDVR	D[+28]DLVTVKTPAFAESVTEGDVR	K	W	99.600000	93.500000	59.300000	84.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2322.220000	3.000000	0.011000	4.500000	68.000000	88.000000	12.641667	5.093500	0.494633	111.634200	67.181200	0.598600	NaN	NaN	NaN	15.887479	7.389738	0.860082	129.863836	91.223029	0.894835	NaN	NaN	NaN	72.875657	49.306384	0.000000	0.094851	0.000000	0.132341	0.074264	0.256752	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLST PE=1 SV=4	ODO2_HUMAN	ODO2_HUMAN	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLST PE=1 SV=4	96.200000	0.004480	48737.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.24338.24338.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24338"	DDLVTVKTPAFAESVTEGDVR	D[+28]DLVTVKTPAFAESVTEGDVR	K	W	98.600000	85.400000	59.700000	82.400000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2314.240000	3.000000	0.007800	3.400000	68.000000	88.000000	12.641667	5.093500	0.494633	111.634200	67.181200	0.598600	NaN	NaN	NaN	15.887479	7.389738	0.860082	129.863836	91.223029	0.894835	NaN	NaN	NaN	72.875657	49.306384	0.000000	0.094851	0.000000	0.132288	0.074240	0.256467	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 1 of Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42	sp|P60953-1|CDC42_HUMAN	CDC42_HUMAN	Isoform 1 of Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42	99.200000	0.001320	21292.700000	1.000000	1.000000	1.000000	Spectrum44555 scans:15310,	DDPSTIEKLAK	D[+28]DPSTIEKLAK	R	N	99.000000	33.100000	50.400000	26.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1315.760000	3.000000	0.000057	0.043000	121.000000	131.000000	82.774000	8.361067	0.083667	0.143400	NaN	NaN	NaN	NaN	NaN	104.026643	12.130380	0.145482	0.166817	NaN	NaN	NaN	NaN	NaN	52.096730	12.130380	0.489381	NaN	0.684463	NaN	0.074217	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Homo sapiens GN=GFPT1	sp|Q06210-2|GFPT1_HUMAN	GFPT1_HUMAN	Isoform 2 of Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Homo sapiens GN=GFPT1	100.000000	0.002630	76742.400000	1.000000	2.000000	2.000000	Spectrum28787 scans:11696,	DDVAAVVDGR	D[+28]DVAAVVDGR	D	L	98.600000	55.000000	47.300000	38.200000	Dimethyl (+28)	1043.530000	2.000000	0.000860	0.820000	279.000000	288.000000	7.901667	1.059233	0.267967	0.866800	0.349950	0.439450	NaN	NaN	NaN	9.930460	1.536754	0.465948	1.008347	0.475185	0.656925	NaN	NaN	NaN	5.469403	1.005970	0.435578	0.309085	0.608721	0.430734	0.074169	0.255900	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Homo sapiens GN=GFPT1	sp|Q06210-2|GFPT1_HUMAN	GFPT1_HUMAN	Isoform 2 of Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Homo sapiens GN=GFPT1	100.000000	0.002630	76742.400000	1.000000	2.000000	2.000000	Spectrum28786 scans:11695,	DDVAAVVDGR	D[+28]DVAAVVDGR	D	L	99.700000	88.700000	47.600000	68.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1053.540000	2.000000	0.002200	2.100000	279.000000	288.000000	7.901667	1.059233	0.267967	0.866800	0.349950	0.439450	NaN	NaN	NaN	9.930460	1.536754	0.465948	1.008347	0.475185	0.656925	NaN	NaN	NaN	5.469403	1.005970	0.435578	0.309085	0.608476	0.430561	0.074145	0.255617	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome activator complex subunit 2 OS=Homo sapiens GN=PSME2 PE=1 SV=4	PSME2_HUMAN	PSME2_HUMAN	Proteasome activator complex subunit 2 OS=Homo sapiens GN=PSME2 PE=1 SV=4	100.000000	0.003950	27384.200000	1.000000	1.000000	3.000000	Spectrum18525 scans:10649,	DEAAYGELR	D[+28]EAAYGELR	R	A	99.700000	71.200000	45.000000	40.200000	Dimethyl (+28)	1050.500000	2.000000	-0.000240	-0.230000	195.000000	203.000000	0.754733	0.374767	0.520967	0.693150	12.508700	12.981200	NaN	7.703857	3.244886	0.948515	0.543718	0.905871	0.806340	16.985131	19.405337	NaN	3.281000	1.554958	0.877427	6.936616	0.051465	0.242617	0.071865	0.337833	0.073509	0.017409	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=2	MYG1_HUMAN	MYG1_HUMAN	UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=2	100.000000	0.010500	42431.800000	3.000000	7.000000	8.000000	Spectrum64689 scans:38833,	DEALDQVSGIPGCIFVH	D[+28]EALDQVSGIPGC[+57]IFVH	R	A	99.700000	75.100000	49.500000	52.400000	Dimethyl (+28), Carbamidomethyl (+57)	1883.910000	2.000000	-0.002600	-1.400000	328.000000	344.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3	EF1B_HUMAN	EF1B_HUMAN	Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3	100.000000	0.002630	24746.200000	2.000000	2.000000	2.000000	Spectrum13899 scans:2258,	DEEESEEAKR	D[+28]EEESEEAKR	D	L	99.700000	36.900000	45.200000	19.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1294.600000	3.000000	-0.000085	-0.065000	108.000000	117.000000	4.883633	2.035233	0.531467	210.792500	92.628300	0.442350	NaN	NaN	NaN	6.137531	2.952752	0.924129	245.214483	125.776767	0.661260	NaN	NaN	NaN	125.676007	64.364759	0.149559	0.317216	0.208674	0.441355	0.073114	0.254772	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Isoform 4 of Unconventional myosin-XVIIIa OS=Homo sapiens GN=MYO18A	sp|Q92614-4|MY18A_HUMAN	MY18A_HUMAN	Isoform 4 of Unconventional myosin-XVIIIa OS=Homo sapiens GN=MYO18A	99.500000	0.026300	231226.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction2A.4008.4008.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4008"	DEEVEEAR	D[+28]EEVEEAR	R	Q	98.600000	48.500000	45.800000	17.000000	Dimethyl (+28)	1003.450000	2.000000	-0.000640	-0.630000	1594.000000	1601.000000	20.011467	10.930067	0.877133	0.539200	0.398400	0.736850	NaN	NaN	NaN	25.149512	15.857530	1.525184	0.627250	0.540974	1.101502	NaN	NaN	NaN	12.888381	8.199252	0.460120	0.465594	0.641727	0.647540	0.072769	0.254492	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 4 of Unconventional myosin-XVIIIa OS=Homo sapiens GN=MYO18A	sp|Q92614|MY18A_HUMAN	MY18A_HUMAN	Unconventional myosin-XVIIIa OS=Homo sapiens GN=MYO18A PE=1 SV=3	100.000000	0.001320	233101.800000	1.000000	1.000000	1.000000	Spectrum15045 scans:4002,	DEEVEEAR	D[+28]EEVEEAR	R	Q	99.000000	70.900000	42.500000	50.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1013.450000	2.000000	-0.000190	-0.190000	1594.000000	1601.000000	20.011467	10.930067	0.877133	0.539200	0.398400	0.736850	NaN	NaN	NaN	25.149512	15.857530	1.525184	0.627250	0.540974	1.101502	NaN	NaN	NaN	12.888381	8.199252	0.460120	0.465594	0.641469	0.647280	0.072496	0.254212	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	sp|P26368|U2AF2_HUMAN	U2AF2_HUMAN	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4	100.000000	0.022500	53483.100000	3.000000	6.000000	9.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.28377.28377.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28377"	DEEYEEIVEDVR	D[+28]EEYEEIVEDVR	D	D	99.700000	97.400000	47.800000	77.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1561.700000	2.000000	-0.003800	-2.400000	392.000000	403.000000	1.102467	0.361567	0.389767	0.762800	0.193900	0.256650	NaN	NaN	NaN	1.385531	0.524567	0.677737	0.887364	0.263290	0.383661	NaN	NaN	NaN	1.136447	0.393929	0.137361	0.203856	0.191422	0.283292	0.072473	0.253933	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	sp|P26368|U2AF2_HUMAN	U2AF2_HUMAN	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4	100.000000	0.040300	53483.100000	4.000000	8.000000	9.000000	Nsco_Tails_biological_replicate2_apoptosis.24650.24650.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24650"	DEEYEEIVEDVR	D[+28]EEYEEIVEDVR	D	D	99.100000	47.700000	47.600000	41.700000	Dimethyl (+28)	1551.690000	2.000000	-0.001400	-0.910000	392.000000	403.000000	1.102467	0.361567	0.389767	0.762800	0.193900	0.256650	NaN	NaN	NaN	1.385531	0.524567	0.677737	0.887364	0.263290	0.383661	NaN	NaN	NaN	1.136447	0.393929	0.137361	0.203856	0.191345	0.283179	0.072292	0.253655	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3	TYSY_HUMAN	TYSY_HUMAN	Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3	100.000000	0.006590	35699.300000	2.000000	2.000000	5.000000	Spectrum52590 scans:24548,	DEFPLLTTKR	D[+28]EFPLLTTKR	R	V	99.700000	45.200000	50.100000	29.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1292.750000	3.000000	0.000140	0.100000	69.000000	78.000000	1.217733	0.805233	0.536000	0.195550	19.221900	10.103050	NaN	NaN	NaN	1.530393	1.168246	0.932012	0.227483	26.100754	15.102848	NaN	NaN	NaN	0.878938	13.634500	0.406058	0.425963	0.565418	0.591473	0.072269	0.253100	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	SPEE_HUMAN	SPEE_HUMAN	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	100.000000	0.054000	33806.500000	4.000000	9.000000	41.000000	Spectrum66639 scans:41035,	DEFSYQEMIANLPLCSHPNPR	D[+28]EFSYQEMIANLPLC[+57]SHPNPR	R	K	99.700000	59.700000	48.100000	55.800000	Dimethyl (+28), Carbamidomethyl (+57)	2545.170000	3.000000	-0.006100	-2.400000	75.000000	95.000000	0.616000	0.332500	0.539700	NaN	NaN	NaN	NaN	NaN	NaN	0.774161	0.482397	0.938445	NaN	NaN	NaN	NaN	NaN	NaN	0.774161	0.482397	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytoplasmic aconitate hydratase OS=Homo sapiens GN=ACO1 PE=1 SV=3	ACOC_HUMAN	ACOC_HUMAN	Cytoplasmic aconitate hydratase OS=Homo sapiens GN=ACO1 PE=1 SV=3	100.000000	0.003950	98383.000000	2.000000	3.000000	3.000000	Spectrum39351 scans:9298,	DEIQAVER	D[+28]EIQAVER	R	Q	99.000000	65.400000	48.000000	19.200000	Dimethyl (+28), Label:13C(6) (+6)	992.520000	2.000000	0.000350	0.350000	594.000000	601.000000	1.236900	3.598500	5.784800	3.429400	4.666950	1.859650	NaN	NaN	NaN	1.554480	5.220766	10.058772	3.989414	6.337090	2.779954	NaN	NaN	NaN	2.771947	5.778928	0.263462	0.061298	0.366565	0.085048	0.071421	0.252272	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	PDC6I_HUMAN	PDC6I_HUMAN	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	100.000000	0.006590	96007.400000	2.000000	5.000000	5.000000	Spectrum60028 scans:33279,	DELLKDLQQSIAR	D[+28]ELLKDLQQSIAR	R	E	99.700000	47.900000	51.400000	36.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1593.930000	3.000000	-0.000190	-0.120000	703.000000	715.000000	1.218067	0.767400	0.790967	1.519600	2.469950	1.322700	NaN	NaN	NaN	1.530811	1.113357	1.375355	1.767748	3.353860	1.977278	NaN	NaN	NaN	1.649280	2.233608	0.045650	0.295953	0.063489	0.410454	0.071399	0.250361	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	PDC6I_HUMAN	PDC6I_HUMAN	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	100.000000	0.006590	96007.400000	2.000000	5.000000	5.000000	Spectrum60039 scans:33291,	DELLKDLQQSIAR	D[+28]ELLKDLQQSIAR	R	E	99.700000	48.600000	51.900000	35.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1601.910000	3.000000	0.000660	0.410000	703.000000	715.000000	1.218067	0.767400	0.790967	1.519600	2.469950	1.322700	NaN	NaN	NaN	1.530811	1.113357	1.375355	1.767748	3.353860	1.977278	NaN	NaN	NaN	1.649280	2.233608	0.045650	0.295953	0.063464	0.410290	0.071311	0.250090	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens GN=PSMD6 PE=1 SV=1	PSMD6_HUMAN	PSMD6_HUMAN	26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens GN=PSMD6 PE=1 SV=1	100.000000	0.005270	45515.400000	2.000000	4.000000	4.000000	Spectrum17315 scans:8046,	DELMAAVR	NaN	R	D	98.800000	48.800000	46.600000	19.800000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	957.480000	2.000000	-0.000750	-0.780000	39.000000	46.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens GN=PSMD6 PE=1 SV=1	PSMD6_HUMAN	PSMD6_HUMAN	26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens GN=PSMD6 PE=1 SV=1	100.000000	0.005270	45515.400000	2.000000	4.000000	4.000000	Spectrum17322 scans:8054,	DELMAAVR	NaN	R	D	99.000000	51.100000	46.400000	22.100000	Dimethyl (+28), Oxidation (+16)	947.470000	2.000000	-0.000540	-0.570000	39.000000	46.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 2 of Opioid growth factor receptor OS=Homo sapiens GN=OGFR	sp|Q9NZT2-2|OGFR_HUMAN	OGFR_HUMAN	Isoform 2 of Opioid growth factor receptor OS=Homo sapiens GN=OGFR	100.000000	0.002360	71405.600000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.18912.18912.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18912"	DEPAESPSETPGPR	D[+28]EPAESPSETPGPR	G	P	99.500000	56.000000	48.800000	54.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1505.690000	2.000000	-0.002100	-1.400000	532.000000	545.000000	0.596967	0.190233	NaN	13.280000	NaN	NaN	NaN	NaN	NaN	0.750241	0.275994	NaN	15.448597	NaN	NaN	NaN	NaN	NaN	8.099419	0.275994	0.452327	NaN	0.628082	NaN	0.071179	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	ANX11_HUMAN	ANX11_HUMAN	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	100.000000	0.004720	54373.700000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.34035.34035.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34035"	DESTNVDMSLAQR	D[+28]ESTNVDMSLAQR	R	D	99.700000	76.000000	49.100000	61.700000	Dimethyl (+28)	1492.690000	2.000000	0.002600	1.700000	347.000000	359.000000	0.981267	6.854300	1.263633	NaN	NaN	NaN	NaN	NaN	NaN	1.233212	9.944337	2.197241	NaN	NaN	NaN	NaN	NaN	NaN	1.233212	9.944337	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	PPCE_HUMAN	PPCE_HUMAN	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	100.000000	0.021100	80683.500000	3.000000	10.000000	16.000000	Spectrum36608 scans:6090,	DETAVQDYHGH	D[+28]ETAVQDYHGH	R	K	99.700000	88.300000	40.200000	82.600000	Dimethyl (+28)	1298.550000	2.000000	-0.003200	-2.500000	12.000000	22.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	XRCC5_HUMAN	XRCC5_HUMAN	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	100.000000	0.005760	82689.100000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.37115.37115.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37115"	DETEVLKEDIIQGFR	D[+28]ETEVLKEDIIQGFR	D	Y	99.400000	65.700000	57.400000	57.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1864.990000	2.000000	0.004200	2.200000	301.000000	315.000000	2.669967	3.279833	1.104167	29.690050	29.549800	1.036400	NaN	NaN	NaN	3.355494	4.758439	1.919956	34.538374	40.124652	1.549294	NaN	NaN	NaN	18.946934	22.441545	0.293898	0.217254	0.407605	0.300467	0.071114	0.247151	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.123000	57471.900000	10.000000	25.000000	49.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46294.46294.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46294"	DEVGDGTTSVTVLAAELLR	D[+28]EVGDGTTSVTVLAAELLR	D	E	99.700000	131.000000	57.700000	120.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1983.040000	2.000000	-0.000630	-0.320000	93.000000	111.000000	1.216567	0.763867	0.686933	0.704500	0.439300	0.623050	NaN	NaN	NaN	1.528926	1.108231	1.194459	0.819543	0.596510	0.931385	NaN	NaN	NaN	1.174235	0.852371	0.186751	0.185649	0.258899	0.256655	0.071092	0.245316	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.123000	57471.900000	10.000000	25.000000	49.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46378.46378.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46378"	DEVGDGTTSVTVLAAELLR	D[+28]EVGDGTTSVTVLAAELLR	D	E	99.700000	139.000000	57.500000	129.000000	Dimethyl (+28)	1973.030000	2.000000	-0.000640	-0.320000	93.000000	111.000000	1.216567	0.763867	0.686933	0.704500	0.439300	0.623050	NaN	NaN	NaN	1.528926	1.108231	1.194459	0.819543	0.596510	0.931385	NaN	NaN	NaN	1.174235	0.852371	0.186751	0.185649	0.258796	0.256552	0.070961	0.245056	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.123000	57471.900000	10.000000	25.000000	49.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46386.46386.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46386"	DEVGDGTTSVTVLAAELLR	D[+28]EVGDGTTSVTVLAAELLR	D	E	99.700000	147.000000	57.800000	137.000000	Dimethyl (+28), Label:13C(6) (+6)	1979.050000	2.000000	-0.006700	-3.400000	93.000000	111.000000	1.216567	0.763867	0.686933	0.704500	0.439300	0.623050	NaN	NaN	NaN	1.528926	1.108231	1.194459	0.819543	0.596510	0.931385	NaN	NaN	NaN	1.174235	0.852371	0.186751	0.185649	0.258693	0.256450	0.070939	0.244797	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	sp|O00410|IPO5_HUMAN	IPO5_HUMAN	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	100.000000	0.002330	123614.200000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.39880.39880.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39880"	DFDSNAVAGESALDR	D[+28]FDSNAVAGESALDR	D	M	99.700000	81.700000	48.600000	75.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1603.730000	2.000000	-0.010000	-6.200000	331.000000	345.000000	NaN	NaN	NaN	0.429500	0.286750	0.492550	NaN	NaN	NaN	NaN	NaN	NaN	0.499636	0.389368	0.736303	NaN	NaN	NaN	0.499636	0.389368	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	sp|O00410|IPO5_HUMAN	IPO5_HUMAN	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	100.000000	0.017900	123614.200000	4.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.18104.18104.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18104"	DFDSNAVAGESALDR	D[+28]FDSNAVAGESALDR	D	M	99.700000	74.300000	48.400000	72.000000	Dimethyl (+28)	1593.720000	2.000000	-0.008300	-5.200000	331.000000	345.000000	NaN	NaN	NaN	0.429500	0.286750	0.492550	NaN	NaN	NaN	NaN	NaN	NaN	0.499636	0.389368	0.736303	NaN	NaN	NaN	0.499636	0.389368	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Homo sapiens GN=MTHFD1L PE=1 SV=1	sp|Q6UB35|C1TM_HUMAN	C1TM_HUMAN	Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Homo sapiens GN=MTHFD1L PE=1 SV=1	100.000000	0.002630	105773.900000	1.000000	2.000000	2.000000	Spectrum62887 scans:36822,	DFILPISDVR	D[+28]FILPISDVR	R	A	99.300000	59.300000	49.900000	35.500000	Dimethyl (+28)	1201.670000	2.000000	0.000240	0.200000	926.000000	935.000000	0.269133	0.481967	1.713867	0.513450	0.702250	2.780700	NaN	NaN	NaN	0.338235	0.699246	2.980119	0.597295	0.953561	4.156813	NaN	NaN	NaN	0.467765	0.826403	0.171979	0.097194	0.237946	0.134047	0.070831	0.243509	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Homo sapiens GN=MTHFD1L PE=1 SV=1	sp|Q6UB35|C1TM_HUMAN	C1TM_HUMAN	Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Homo sapiens GN=MTHFD1L PE=1 SV=1	99.700000	0.004630	105773.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction6A.36835.36835.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36835"	DFILPISDVR	D[+28]FILPISDVR	R	A	99.500000	63.700000	53.900000	38.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1211.680000	2.000000	0.000110	0.087000	926.000000	935.000000	0.269133	0.481967	1.713867	0.513450	0.702250	2.780700	NaN	NaN	NaN	0.338235	0.699246	2.980119	0.597295	0.953561	4.156813	NaN	NaN	NaN	0.467765	0.826403	0.171979	0.097194	0.237851	0.133994	0.070809	0.242997	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3	TYSY_HUMAN	TYSY_HUMAN	Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3	100.000000	0.005760	35699.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.36141.36141.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36141"	DFLDSLGFSTR	D[+28]FLDSLGFSTR	R	E	99.700000	94.800000	51.700000	78.600000	Dimethyl (+28)	1284.640000	2.000000	0.000720	0.560000	116.000000	126.000000	0.559033	0.482867	0.878400	0.135450	0.668500	3.763400	NaN	NaN	NaN	0.702568	0.700551	1.527387	0.157569	0.907733	5.625832	NaN	NaN	NaN	0.430068	0.804142	0.359546	0.081561	0.497062	0.112398	0.070744	0.242742	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum44358 scans:15083,	DFLTHVSAR	D[+28]FLTHVSAR	R	E	99.700000	42.900000	48.700000	26.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1082.580000	3.000000	0.000400	0.370000	573.000000	581.000000	0.723533	1.372900	1.560000	NaN	0.547150	NaN	NaN	NaN	NaN	0.909304	1.991827	2.712572	NaN	0.742956	NaN	NaN	NaN	NaN	0.909304	1.367392	NaN	0.272715	NaN	0.375674	1.000000	0.242488	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum44360 scans:15085,	DFLTHVSAR	D[+28]FLTHVSAR	R	E	99.700000	45.900000	48.900000	27.900000	Dimethyl (+28), Label:13C(6) (+6)	1078.590000	3.000000	0.000700	0.650000	573.000000	581.000000	0.723533	1.372900	1.560000	NaN	0.547150	NaN	NaN	NaN	NaN	0.909304	1.991827	2.712572	NaN	0.742956	NaN	NaN	NaN	NaN	0.909304	1.367392	NaN	0.272715	NaN	0.375376	1.000000	0.241980	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Peroxiredoxin-6 OS=Homo sapiens GN=PRDX6 PE=1 SV=3	PRDX6_HUMAN	PRDX6_HUMAN	Peroxiredoxin-6 OS=Homo sapiens GN=PRDX6 PE=1 SV=3	99.900000	0.002330	25018.100000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.42649.42649.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42649"	DFTPVCTTELGR	D[+28]FTPVC[+57]TTELGR	R	A	99.000000	59.500000	51.300000	41.200000	Dimethyl (+28), Carbamidomethyl (+57)	1422.690000	2.000000	0.003900	2.700000	42.000000	53.000000	1.264333	0.347800	0.439933	1.238350	10.752300	7.951050	NaN	NaN	NaN	1.588957	0.504594	0.764968	1.440570	14.600177	11.885866	NaN	NaN	NaN	1.514764	7.552385	0.031157	0.467904	0.043005	0.643785	0.070636	0.241728	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.032900	140943.500000	9.000000	17.000000	25.000000	Spectrum12116 scans:43744,	DFVNYLVR	D[+28]FVNYLVR	R	I	99.000000	56.300000	48.800000	38.500000	Dimethyl (+28)	1052.570000	2.000000	-0.000300	-0.290000	64.000000	71.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2	sp|P09960|LKHA4_HUMAN	LKHA4_HUMAN	Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2	100.000000	0.010500	69269.100000	3.000000	7.000000	8.000000	Spectrum37498 scans:7111,	DGETPDPEDPSR	D[+28]GETPDPEDPSR	R	K	99.300000	52.600000	40.300000	46.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1351.570000	2.000000	-0.002600	-1.900000	176.000000	187.000000	41.466367	NaN	NaN	1.795100	9.808450	5.116800	NaN	NaN	NaN	52.113066	NaN	NaN	2.088236	13.318555	7.649002	NaN	NaN	NaN	27.100651	13.318555	0.368942	NaN	0.508835	NaN	0.070550	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2	sp|P09960|LKHA4_HUMAN	LKHA4_HUMAN	Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2	100.000000	0.010500	69269.100000	3.000000	7.000000	8.000000	Spectrum37584 scans:7211,	DGETPDPEDPSR	D[+28]GETPDPEDPSR	R	K	99.700000	66.100000	39.600000	60.200000	Dimethyl (+28)	1341.570000	2.000000	-0.003000	-2.200000	176.000000	187.000000	41.466367	NaN	NaN	1.795100	9.808450	5.116800	NaN	NaN	NaN	52.113066	NaN	NaN	2.088236	13.318555	7.649002	NaN	NaN	NaN	27.100651	13.318555	0.368942	NaN	0.508633	NaN	0.070443	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2	sp|P09960|LKHA4_HUMAN	LKHA4_HUMAN	Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2	100.000000	0.010500	69269.100000	3.000000	7.000000	8.000000	Spectrum37478 scans:7089,	DGETPDPEDPSR	D[+28]GETPDPEDPSR	R	K	99.700000	73.000000	42.300000	65.000000	Dimethyl (+28), Label:13C(6) (+6)	1347.590000	2.000000	-0.001200	-0.850000	176.000000	187.000000	41.466367	NaN	NaN	1.795100	9.808450	5.116800	NaN	NaN	NaN	52.113066	NaN	NaN	2.088236	13.318555	7.649002	NaN	NaN	NaN	27.100651	13.318555	0.368942	NaN	0.508431	NaN	0.070271	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of RNA-binding protein 10 OS=Homo sapiens GN=RBM10	sp|P98175-3|RBM10_HUMAN	RBM10_HUMAN	Isoform 3 of RNA-binding protein 10 OS=Homo sapiens GN=RBM10	100.000000	0.002630	94453.000000	1.000000	2.000000	2.000000	Spectrum3951 scans:19903,	DGLGSDNIGSR	D[+28]GLGSDNIGSR	R	M	99.600000	63.800000	46.200000	40.000000	Dimethyl (+28)	1117.530000	2.000000	-0.001900	-1.700000	777.000000	787.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of RNA-binding protein 10 OS=Homo sapiens GN=RBM10	sp|P98175-4|RBM10_HUMAN	RBM10_HUMAN	Isoform 4 of RNA-binding protein 10 OS=Homo sapiens GN=RBM10	100.000000	0.002630	94353.900000	1.000000	2.000000	2.000000	Spectrum3942 scans:19873,	DGLGSDNIGSR	D[+28]GLGSDNIGSR	R	M	99.300000	55.100000	46.300000	31.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1127.540000	2.000000	-0.001700	-1.500000	776.000000	786.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Double-stranded RNA-specific adenosine deaminase (Fragment) OS=Homo sapiens GN=ADAR PE=4 SV=1	sp|P55265|DSRAD_HUMAN	DSRAD_HUMAN	Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens GN=ADAR PE=1 SV=4	99.800000	0.001320	136051.900000	1.000000	1.000000	1.000000	Spectrum7835 scans:29715,	DGSAFEDGLR	D[+28]GSAFEDGLR	R	H	99.700000	61.100000	44.700000	47.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1103.510000	2.000000	-0.001200	-1.100000	1087.000000	1096.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	sp|Q07955-3|SRSF1_HUMAN	SRSF1_HUMAN	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	100.000000	0.079000	22442.200000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate_3_fraction2A.16593.16593.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16593"	DGTGVVEFVR	D[+28]GTGVVEFVR	R	K	99.700000	70.500000	52.700000	48.300000	Dimethyl (+28), Label:13C(6) (+6)	1111.600000	2.000000	0.000470	0.420000	155.000000	164.000000	3.832100	2.244400	0.527100	4.572700	1.139400	0.250800	NaN	NaN	NaN	4.816011	3.256214	0.916536	5.319413	1.547152	0.374916	NaN	NaN	NaN	5.067712	2.401683	0.031593	0.217620	0.043452	0.298004	0.070016	0.238981	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	sp|Q07955-3|SRSF1_HUMAN	SRSF1_HUMAN	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	100.000000	0.017100	22442.200000	5.000000	9.000000	13.000000	Spectrum50585 scans:22221,	DGTGVVEFVR	D[+28]GTGVVEFVR	R	K	99.700000	64.900000	48.300000	46.400000	Dimethyl (+28)	1105.580000	2.000000	-0.000480	-0.440000	155.000000	164.000000	3.832100	2.244400	0.527100	4.572700	1.139400	0.250800	NaN	NaN	NaN	4.816011	3.256214	0.916536	5.319413	1.547152	0.374916	NaN	NaN	NaN	5.067712	2.401683	0.031593	0.217620	0.043435	0.297886	0.069995	0.238734	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	sp|Q07955-3|SRSF1_HUMAN	SRSF1_HUMAN	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	100.000000	0.017100	22442.200000	5.000000	9.000000	13.000000	Spectrum19085 scans:11824,	DGYDYDGYR	D[+28]GYDYDGYR	R	L	99.700000	50.700000	36.000000	36.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1160.460000	2.000000	-0.000190	-0.160000	75.000000	83.000000	NaN	NaN	NaN	374.718100	29.820400	0.047800	NaN	NaN	NaN	NaN	NaN	NaN	435.908797	40.492090	0.071455	NaN	NaN	NaN	435.908797	40.492090	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Purine nucleoside phosphorylase OS=Homo sapiens GN=PNP PE=1 SV=2	PNPH_HUMAN	PNPH_HUMAN	Purine nucleoside phosphorylase OS=Homo sapiens GN=PNP PE=1 SV=2	100.000000	0.007900	32100.000000	3.000000	5.000000	6.000000	Spectrum56499 scans:29003,	DHINLPGFSGQNPLR	D[+28]HINLPGFSGQNPLR	R	G	99.500000	41.000000	51.700000	37.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1701.880000	3.000000	0.001700	0.990000	134.000000	148.000000	0.579900	0.205267	0.291933	51.210300	0.660550	NaN	NaN	NaN	NaN	0.728792	0.297804	0.507622	59.572837	0.896938	NaN	NaN	NaN	NaN	30.150815	0.597371	0.453686	0.295918	0.622249	0.404744	0.069953	0.237022	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Purine nucleoside phosphorylase OS=Homo sapiens GN=PNP PE=1 SV=2	PNPH_HUMAN	PNPH_HUMAN	Purine nucleoside phosphorylase OS=Homo sapiens GN=PNP PE=1 SV=2	100.000000	0.007900	32100.000000	3.000000	5.000000	6.000000	Spectrum56502 scans:29007,	DHINLPGFSGQNPLR	D[+28]HINLPGFSGQNPLR	R	G	99.700000	61.600000	52.000000	53.900000	Dimethyl (+28), Label:13C(6) (+6)	1697.900000	3.000000	0.001200	0.730000	134.000000	148.000000	0.579900	0.205267	0.291933	51.210300	0.660550	NaN	NaN	NaN	NaN	0.728792	0.297804	0.507622	59.572837	0.896938	NaN	NaN	NaN	NaN	30.150815	0.597371	0.453686	0.295918	0.622003	0.404585	0.069910	0.236779	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Purine nucleoside phosphorylase OS=Homo sapiens GN=PNP PE=1 SV=2	PNPH_HUMAN	PNPH_HUMAN	Purine nucleoside phosphorylase OS=Homo sapiens GN=PNP PE=1 SV=2	100.000000	0.007900	32100.000000	3.000000	5.000000	6.000000	Spectrum56463 scans:28956,	DHINLPGFSGQNPLR	D[+28]HINLPGFSGQNPLR	R	G	99.700000	79.600000	51.600000	64.200000	Dimethyl (+28)	1691.870000	3.000000	0.000340	0.200000	134.000000	148.000000	0.579900	0.205267	0.291933	51.210300	0.660550	NaN	NaN	NaN	NaN	0.728792	0.297804	0.507622	59.572837	0.896938	NaN	NaN	NaN	NaN	30.150815	0.597371	0.453686	0.295918	0.621512	0.404425	0.069763	0.236537	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Leucine-rich repeat flightless-interacting protein 1 OS=Homo sapiens GN=LRRFIP1	sp|Q32MZ4-2|LRRF1_HUMAN	LRRF1_HUMAN	Isoform 2 of Leucine-rich repeat flightless-interacting protein 1 OS=Homo sapiens GN=LRRFIP1	100.000000	0.002630	86385.200000	2.000000	2.000000	2.000000	Spectrum2049 scans:14858,	DHNEEEGEETGLR	NaN	R	D	99.700000	37.000000	41.300000	14.400000	Dimethyl (+28)	1541.660000	3.000000	0.000720	0.470000	473.000000	485.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	TCPQ_HUMAN	TCPQ_HUMAN	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	100.000000	0.017300	59603.000000	3.000000	5.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.27174.27174.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27174"	DIDEVSSLLR	D[+28]IDEVSSLLR	R	T	99.300000	57.200000	53.000000	42.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1183.630000	2.000000	-0.000700	-0.590000	156.000000	165.000000	0.605600	0.271233	0.448033	0.961350	0.409650	0.424450	NaN	NaN	NaN	0.761091	0.393510	0.779053	1.118336	0.556250	0.634502	NaN	NaN	NaN	0.939714	0.474880	0.119583	0.108034	0.163690	0.147532	0.069511	0.235574	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	TCPQ_HUMAN	TCPQ_HUMAN	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	100.000000	0.014500	59603.000000	5.000000	8.000000	11.000000	Spectrum21120 scans:23060,	DIDEVSSLLR	D[+28]IDEVSSLLR	R	T	99.600000	61.800000	49.200000	34.500000	Dimethyl (+28)	1173.620000	2.000000	-0.000280	-0.240000	156.000000	165.000000	0.605600	0.271233	0.448033	0.961350	0.409650	0.424450	NaN	NaN	NaN	0.761091	0.393510	0.779053	1.118336	0.556250	0.634502	NaN	NaN	NaN	0.939714	0.474880	0.119583	0.108034	0.163626	0.147416	0.069490	0.235334	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	TCPQ_HUMAN	TCPQ_HUMAN	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	100.000000	0.014500	59603.000000	5.000000	8.000000	11.000000	Spectrum60058 scans:33315,	DIDEVSSLLR	D[+28]IDEVSSLLR	R	T	99.600000	64.500000	49.600000	42.400000	Dimethyl (+28), Label:13C(6) (+6)	1179.640000	2.000000	0.000110	0.093000	156.000000	165.000000	0.605600	0.271233	0.448033	0.961350	0.409650	0.424450	NaN	NaN	NaN	0.761091	0.393510	0.779053	1.118336	0.556250	0.634502	NaN	NaN	NaN	0.939714	0.474880	0.119583	0.108034	0.163561	0.147243	0.069469	0.235095	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Dynein light chain roadblock-type 1 OS=Homo sapiens GN=DYNLRB1 PE=1 SV=3	sp|Q9NP97|DLRB1_HUMAN	DLRB1_HUMAN	Dynein light chain roadblock-type 1 OS=Homo sapiens GN=DYNLRB1 PE=1 SV=3	100.000000	0.002360	10903.900000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.60588.60588.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=60588"	DIDPQNDLTFLR	D[+28]IDPQNDLTFLR	R	I	99.700000	67.400000	53.700000	52.600000	Dimethyl (+28)	1473.750000	2.000000	-0.001100	-0.730000	59.000000	70.000000	0.543500	0.293233	0.551233	2.642200	1.480400	1.504350	NaN	NaN	NaN	0.683046	0.425428	0.958500	3.073666	2.010184	2.248823	NaN	NaN	NaN	1.878356	1.217806	0.360789	0.367227	0.493278	0.500306	0.069449	0.234856	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Protein TSSC4 OS=Homo sapiens GN=TSSC4	sp|Q9Y5U2-2|TSSC4_HUMAN	TSSC4_HUMAN	Isoform 2 of Protein TSSC4 OS=Homo sapiens GN=TSSC4	99.900000	0.001320	27916.100000	1.000000	1.000000	1.000000	Spectrum12678 scans:46796,	DIFDCLEGAAR	D[+28]IFDC[+57]LEGAAR	R	R	99.700000	68.400000	45.500000	48.600000	Dimethyl (+28), Carbamidomethyl (+57)	1293.600000	2.000000	-0.001200	-0.960000	31.000000	41.000000	1.540333	1.056500	0.475633	0.041700	0.322350	232.263950	NaN	NaN	NaN	1.935822	1.532788	0.827045	0.048510	0.437708	347.206742	NaN	NaN	NaN	0.992166	0.985248	0.484050	0.322918	0.661542	0.439767	0.069386	0.234618	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3	sp|P54578-2|UBP14_HUMAN	UBP14_HUMAN	Isoform 2 of Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14	100.000000	0.002880	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.32146.32146.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32146"	DIGSNNCGYYDLQAVLTHQGR	D[+28]IGSNNC[+57]GYYDLQAVLTHQGR	D	S	99.400000	79.700000	52.400000	78.200000	Dimethyl (+28), Carbamidomethyl (+57)	2408.110000	3.000000	-0.010000	-4.100000	0.000000	0.000000	3.237167	0.445200	0.181400	NaN	NaN	NaN	NaN	NaN	NaN	4.068326	0.645904	0.315423	NaN	NaN	NaN	NaN	NaN	NaN	4.068326	0.645904	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.039500	64268.600000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.23287.23287.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23287"	DIISIAEDEDLR	D[+28]IISIAEDEDLR	R	V	99.700000	93.500000	54.000000	74.200000	Dimethyl (+28), Label:13C(6) (+6)	1421.730000	2.000000	-0.000340	-0.240000	169.000000	180.000000	0.590000	0.318233	0.536833	NaN	7.440700	1.915800	NaN	NaN	0.741029	0.741485	0.461698	0.933461	NaN	10.103469	2.863891	NaN	NaN	0.355103	0.741485	5.282584	NaN	0.470628	NaN	0.640424	1.000000	0.232496	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.034200	64268.600000	8.000000	18.000000	26.000000	Spectrum12596 scans:46351,	DIISIAEDEDLR	D[+28]IISIAEDEDLR	R	V	99.700000	85.000000	49.500000	46.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1425.720000	2.000000	-0.002400	-1.700000	169.000000	180.000000	0.590000	0.318233	0.536833	NaN	7.440700	1.915800	NaN	NaN	0.741029	0.741485	0.461698	0.933461	NaN	10.103469	2.863891	NaN	NaN	0.355103	0.741485	5.282584	NaN	0.470628	NaN	0.640172	1.000000	0.232029	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.034200	64268.600000	8.000000	18.000000	26.000000	Spectrum21131 scans:23296,	DIISIAEDEDLR	D[+28]IISIAEDEDLR	R	V	99.700000	88.400000	49.500000	59.800000	Dimethyl (+28)	1415.710000	2.000000	-0.000220	-0.160000	169.000000	180.000000	0.590000	0.318233	0.536833	NaN	7.440700	1.915800	NaN	NaN	0.741029	0.741485	0.461698	0.933461	NaN	10.103469	2.863891	NaN	NaN	0.355103	0.741485	5.282584	NaN	0.470628	NaN	0.639922	1.000000	0.231797	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform 2 of ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42	sp|Q86XP3-2|DDX42_HUMAN	DDX42_HUMAN	Isoform 2 of ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42	86.700000	0.002310	90051.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.29362.29362.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29362"	DILIDPIR	D[+28]ILIDPIR	R	V	99.000000	57.200000	51.600000	28.800000	Dimethyl (+28), Label:13C(6) (+6)	987.610000	2.000000	-0.000071	-0.072000	332.000000	339.000000	0.554533	0.342100	2.777333	17.140500	2.476100	0.206000	NaN	NaN	NaN	0.696913	0.496325	4.829305	19.939509	3.362211	0.307945	NaN	NaN	NaN	10.318211	1.929268	0.455705	0.406697	0.620846	0.552777	0.069034	0.231565	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4	SYVC_HUMAN	SYVC_HUMAN	Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4	100.000000	0.039500	140459.500000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.12965.12965.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12965"	DINLDVNR	D[+28]INLDVNR	R	I	99.000000	59.300000	51.500000	18.400000	Dimethyl (+28)	985.520000	2.000000	0.000000	0.000470	935.000000	942.000000	4.487100	6.862633	0.936233	1.511800	0.236300	NaN	9.928343	NaN	NaN	5.639186	9.956427	1.627949	1.758674	0.320864	NaN	6.640366	NaN	NaN	4.679408	5.138645	0.088049	0.479491	0.119910	0.651462	0.004703	0.231102	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4	SYVC_HUMAN	SYVC_HUMAN	Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4	100.000000	0.039500	140459.500000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.12962.12962.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12962"	DINLDVNR	D[+28]INLDVNR	R	I	99.000000	80.000000	51.600000	21.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	995.530000	2.000000	-0.000110	-0.110000	935.000000	942.000000	4.487100	6.862633	0.936233	1.511800	0.236300	NaN	9.928343	NaN	NaN	5.639186	9.956427	1.627949	1.758674	0.320864	NaN	6.640366	NaN	NaN	4.679408	5.138645	0.088049	0.479491	0.119863	0.651207	0.004701	0.230872	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum28329 scans:10421,	DIQCEELSDAR	DIQC[+57]EELSDAR	L	W	98.800000	46.900000	41.700000	39.500000	Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1344.580000	2.000000	-0.002000	-1.500000	9.000000	19.000000	NaN	NaN	0.259500	5.427100	6.981400	NaN	NaN	NaN	NaN	NaN	NaN	0.451226	6.313334	9.479802	NaN	NaN	NaN	NaN	6.313334	9.479802	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum28326 scans:10411,	DIQCEELSDAR	DIQC[+57]EELSDAR	L	W	99.300000	55.000000	43.500000	48.900000	Carbamidomethyl (+57), Label:13C(6) (+6)	1340.600000	2.000000	0.000920	0.690000	9.000000	19.000000	NaN	NaN	0.259500	5.427100	6.981400	NaN	NaN	NaN	NaN	NaN	NaN	0.451226	6.313334	9.479802	NaN	NaN	NaN	NaN	6.313334	9.479802	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2	PSA_HUMAN	PSA_HUMAN	Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2	100.000000	0.007900	103261.100000	3.000000	5.000000	6.000000	Spectrum48213 scans:19503,	DISLVVPKDR	D[+28]ISLVVPKDR	F	V	99.600000	37.200000	49.100000	22.400000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1214.740000	3.000000	-0.000240	-0.200000	201.000000	210.000000	1.087633	1.423133	1.384967	117.653150	7.642300	0.051850	NaN	NaN	NaN	1.366889	2.064706	2.408219	136.865668	10.377215	0.077510	NaN	NaN	NaN	69.116278	6.220961	0.413517	0.370378	0.562267	0.502429	0.068686	0.230182	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2	PSA_HUMAN	PSA_HUMAN	Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2	100.000000	0.007900	103261.100000	3.000000	5.000000	6.000000	Spectrum48310 scans:19613,	DISLVVPKDR	D[+28]ISLVVPKDR	F	V	99.700000	41.500000	47.800000	27.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1206.760000	3.000000	0.000260	0.210000	201.000000	210.000000	1.087633	1.423133	1.384967	117.653150	7.642300	0.051850	NaN	NaN	NaN	1.366889	2.064706	2.408219	136.865668	10.377215	0.077510	NaN	NaN	NaN	69.116278	6.220961	0.413517	0.370378	0.562046	0.502232	0.068604	0.229725	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3	UBP14_HUMAN	UBP14_HUMAN	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3	100.000000	0.002330	56052.300000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.51273.51273.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=51273"	DKVSIVTPEDILR	D[+28]KVSIVTPEDILR	D	L	98.700000	59.700000	56.200000	39.900000	Dimethyl (+28), Dimethyl (+28)	1539.890000	3.000000	0.001100	0.740000	453.000000	465.000000	21.062333	15.227767	9.711300	0.917300	NaN	NaN	NaN	NaN	NaN	26.470194	22.092707	16.886281	1.067093	NaN	NaN	NaN	NaN	NaN	13.768644	22.092707	0.432323	NaN	0.587377	NaN	0.068584	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB	sp|P47756|CAPZB_HUMAN	CAPZB_HUMAN	F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB PE=1 SV=4	100.000000	0.036900	31333.600000	3.000000	9.000000	28.000000	Spectrum48140 scans:19416,	DKVVGKDYLLCDYNR	D[+28]KVVGKDYLLC[+57]DYNR	R	D	99.300000	30.800000	53.600000	15.700000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Carbamidomethyl (+57), Label:13C(6) (+6)	1955.070000	4.000000	-0.000640	-0.330000	52.000000	66.000000	NaN	NaN	0.212433	NaN	NaN	0.025450	NaN	NaN	NaN	NaN	NaN	0.369385	NaN	NaN	0.038045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	NUCL_HUMAN	NUCL_HUMAN	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	100.000000	0.007900	76597.900000	6.000000	6.000000	6.000000	Spectrum8702 scans:32223,	DLAVVDVR	D[+28]LAVVDVR	N	I	99.000000	59.100000	47.400000	13.200000	Dimethyl (+28)	913.520000	2.000000	-0.000260	-0.290000	335.000000	342.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.034600	16100.700000	6.000000	12.000000	12.000000	Nsco_Tails_biological_replicate1_apoptosis.34447.34447.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34447"	DLDFETGDAGASATFPMQCSALR	D[+28]LDFETGDAGASATFPMQC[+57]SALR	D	K	99.700000	87.200000	48.100000	75.100000	Dimethyl (+28), Carbamidomethyl (+57)	2487.090000	2.000000	-0.019000	-7.800000	4.000000	26.000000	0.460200	0.293033	0.628767	2.777050	0.201800	0.076100	NaN	NaN	NaN	0.578359	0.425138	1.093317	3.230537	0.274017	0.113760	NaN	NaN	NaN	1.904448	0.349578	0.387222	0.135519	0.525483	0.183477	0.068442	0.228816	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.030700	16100.700000	5.000000	11.000000	13.000000	NSco_TAILS_20150124_Protein_complex_100Kda.55802.55802.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=55802"	DLDFETGDAGASATFPMQCSALR	D[+28]LDFETGDAGASATFPMQC[+57]SALR	D	K	99.700000	75.300000	49.100000	75.300000	Dimethyl (+28), Oxidation (+16), Carbamidomethyl (+57)	2503.110000	2.000000	0.005600	2.200000	4.000000	26.000000	0.460200	0.293033	0.628767	2.777050	0.201800	0.076100	NaN	NaN	NaN	0.578359	0.425138	1.093317	3.230537	0.274017	0.113760	NaN	NaN	NaN	1.904448	0.349578	0.387222	0.135519	0.525277	0.183405	0.068341	0.228590	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.030700	16100.700000	5.000000	11.000000	13.000000	NSco_TAILS_20150124_Protein_complex_100Kda.62654.62654.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=62654"	DLDFETGDAGASATFPMQCSALR	D[+28]LDFETGDAGASATFPMQC[+57]SALR	D	K	99.700000	79.700000	49.400000	78.300000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2497.110000	2.000000	-0.007800	-3.100000	4.000000	26.000000	0.460200	0.293033	0.628767	2.777050	0.201800	0.076100	NaN	NaN	NaN	0.578359	0.425138	1.093317	3.230537	0.274017	0.113760	NaN	NaN	NaN	1.904448	0.349578	0.387222	0.135519	0.525072	0.183334	0.068321	0.227915	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	XRCC5_HUMAN	XRCC5_HUMAN	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	100.000000	0.015000	82689.100000	3.000000	5.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.29056.29056.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29056"	DLDMVAIVR	D[+28]LDMVAIVR	D	Y	99.600000	57.700000	52.700000	31.800000	Dimethyl (+28)	1058.580000	2.000000	0.000510	0.480000	386.000000	394.000000	0.549367	1.295200	2.528300	0.642600	0.758250	1.180400	NaN	NaN	NaN	0.690419	1.879099	4.396279	0.747535	1.029601	1.764556	NaN	NaN	NaN	0.718977	1.454350	0.025273	0.180896	0.034257	0.244626	0.068159	0.227690	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	XRCC5_HUMAN	XRCC5_HUMAN	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	100.000000	0.002330	82689.100000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.53104.53104.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=53104"	DLDMVAIVR	D[+28]LDMVAIVR	D	Y	98.600000	51.200000	52.700000	29.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1068.590000	2.000000	-0.002400	-2.200000	386.000000	394.000000	0.549367	1.295200	2.528300	0.642600	0.758250	1.180400	NaN	NaN	NaN	0.690419	1.879099	4.396279	0.747535	1.029601	1.764556	NaN	NaN	NaN	0.718977	1.454350	0.025273	0.180896	0.034244	0.244530	0.068139	0.226797	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2	TTL12_HUMAN	TTL12_HUMAN	Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2	100.000000	0.007900	74385.700000	3.000000	5.000000	6.000000	Spectrum27492 scans:8659,	DLDTGEEVTR	D[+28]LDTGEEVTR	R	D	99.700000	68.200000	46.200000	47.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1171.560000	2.000000	0.000430	0.370000	231.000000	240.000000	0.605400	0.312200	0.552967	0.614600	6.373000	6.546150	NaN	11.732657	NaN	0.760840	0.452945	0.961514	0.714963	8.653676	9.785709	NaN	4.996827	NaN	0.737901	4.701150	0.019784	0.185979	0.026795	0.251304	0.068119	0.015448	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2	TTL12_HUMAN	TTL12_HUMAN	Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2	100.000000	0.007900	74385.700000	3.000000	5.000000	6.000000	Spectrum27494 scans:8663,	DLDTGEEVTR	D[+28]LDTGEEVTR	R	D	99.700000	80.400000	47.100000	58.300000	Dimethyl (+28), Label:13C(6) (+6)	1167.570000	2.000000	0.000290	0.250000	231.000000	240.000000	0.605400	0.312200	0.552967	0.614600	6.373000	6.546150	NaN	11.732657	NaN	0.760840	0.452945	0.961514	0.714963	8.653676	9.785709	NaN	4.996827	NaN	0.737901	4.701150	0.019784	0.185979	0.026785	0.251206	0.068099	0.015433	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2	TTL12_HUMAN	TTL12_HUMAN	Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2	100.000000	0.007900	74385.700000	3.000000	5.000000	6.000000	Spectrum40456 scans:10574,	DLDTGEEVTR	D[+28]LDTGEEVTR	R	D	99.700000	82.600000	46.000000	63.700000	Dimethyl (+28)	1161.550000	2.000000	-0.000560	-0.480000	231.000000	240.000000	0.605400	0.312200	0.552967	0.614600	6.373000	6.546150	NaN	11.732657	NaN	0.760840	0.452945	0.961514	0.714963	8.653676	9.785709	NaN	4.996827	NaN	0.737901	4.701150	0.019784	0.185979	0.026774	0.251108	0.068079	0.015418	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	sp|Q9H3K6-2|BOLA2_HUMAN	BOLA2_HUMAN	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	100.000000	0.011900	6823.700000	2.000000	6.000000	9.000000	Spectrum48867 scans:20247,	DLEAEHVEVEDTTLNR	D[+28]LEAEHVEVEDTTLNR	R	C	99.600000	41.000000	49.000000	36.900000	Dimethyl (+28)	1896.900000	3.000000	-0.002300	-1.200000	15.000000	30.000000	0.674967	0.216700	0.319533	0.067850	5.941950	85.615800	NaN	NaN	NaN	0.848268	0.314392	0.555614	0.078930	8.068369	127.985350	NaN	NaN	NaN	0.463599	4.191380	0.440934	0.475206	0.596507	0.641371	0.068059	0.225911	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	DYHC1_HUMAN	DYHC1_HUMAN	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	100.000000	0.009220	532387.600000	5.000000	7.000000	7.000000	Spectrum18759 scans:11214,	DLEASIAR	D[+28]LEASIAR	R	Y	99.000000	50.800000	47.400000	17.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	911.490000	2.000000	-0.000270	-0.300000	3439.000000	3446.000000	4.527600	1.009800	0.330433	0.673900	0.459350	0.821900	NaN	NaN	NaN	5.690084	1.465035	0.574567	0.783946	0.623735	1.228642	NaN	NaN	NaN	3.237015	1.044385	0.412839	0.243758	0.558282	0.328865	0.067999	0.225032	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	DYHC1_HUMAN	DYHC1_HUMAN	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	100.000000	0.009220	532387.600000	5.000000	7.000000	7.000000	Spectrum18760 scans:11217,	DLEASIAR	D[+28]LEASIAR	R	Y	99.000000	59.200000	47.400000	29.200000	Dimethyl (+28)	901.490000	2.000000	0.000180	0.200000	3439.000000	3446.000000	4.527600	1.009800	0.330433	0.673900	0.459350	0.821900	NaN	NaN	NaN	5.690084	1.465035	0.574567	0.783946	0.623735	1.228642	NaN	NaN	NaN	3.237015	1.044385	0.412839	0.243758	0.558064	0.328482	0.067979	0.224814	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Elongation factor Tu, mitochondrial OS=Homo sapiens GN=TUFM PE=1 SV=2	EFTU_HUMAN	EFTU_HUMAN	Elongation factor Tu, mitochondrial OS=Homo sapiens GN=TUFM PE=1 SV=2	100.000000	0.006940	49524.300000	3.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction6A.47070.47070.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47070"	DLEKPFLLPVEAVY	D[+28]LEKPFLLPVEAVY	R	S	99.400000	64.200000	57.000000	51.700000	Dimethyl (+28), Dimethyl (+28)	1687.940000	2.000000	-0.000980	-0.580000	253.000000	266.000000	0.058300	2.248900	4.584200	0.558900	NaN	NaN	NaN	NaN	NaN	0.073269	3.262743	7.971135	0.650167	NaN	NaN	NaN	NaN	NaN	0.361718	3.262743	0.428559	NaN	0.579089	NaN	0.067602	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=4 SV=1	E7EX90_HUMAN	E7EX90_HUMAN	Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=4 SV=1	100.000000	0.006590	139078.900000	3.000000	5.000000	5.000000	Spectrum18050 scans:9621,	DLETSCSDIR	D[+28]LETSC[+57]SDIR	R	Q	99.000000	46.800000	43.600000	32.800000	Dimethyl (+28), Carbamidomethyl (+57)	1222.550000	2.000000	-0.000110	-0.087000	769.000000	778.000000	80.449200	1.888133	0.325300	3.744250	1.852550	2.385650	NaN	NaN	NaN	101.104939	2.739336	0.565641	4.355678	2.515514	3.566261	NaN	NaN	NaN	52.730309	2.627425	0.238485	0.027100	0.322126	0.036490	0.067582	0.224160	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=4 SV=1	E7EX90_HUMAN	E7EX90_HUMAN	Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=4 SV=1	100.000000	0.006590	139078.900000	3.000000	5.000000	5.000000	Spectrum18051 scans:9624,	DLETSCSDIR	D[+28]LETSC[+57]SDIR	R	Q	99.700000	63.100000	43.900000	52.700000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1232.560000	2.000000	-0.001900	-1.600000	769.000000	778.000000	80.449200	1.888133	0.325300	3.744250	1.852550	2.385650	NaN	NaN	NaN	101.104939	2.739336	0.565641	4.355678	2.515514	3.566261	NaN	NaN	NaN	52.730309	2.627425	0.238485	0.027100	0.322001	0.036476	0.067523	0.223943	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Protein C11orf58 OS=Homo sapiens GN=C11orf58 PE=4 SV=1	E9PQA1_HUMAN	E9PQA1_HUMAN	Protein C11orf58 OS=Homo sapiens GN=C11orf58 PE=4 SV=1	100.000000	0.007080	9610.100000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.48253.48253.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=48253"	DLGSSNWEAADLGNEER	D[+28]LGSSNWEAADLGNEER	D	K	99.700000	118.000000	48.400000	105.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1899.850000	2.000000	-0.002100	-1.100000	21.000000	37.000000	NaN	0.062300	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.090386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.090386	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	DRG1_HUMAN	DRG1_HUMAN	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	100.000000	0.022400	40525.800000	3.000000	4.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis.23518.23518.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23518"	DLIDVVEGNR	D[+28]LIDVVEGNR	D	V	99.700000	68.800000	52.700000	54.200000	Dimethyl (+28)	1156.610000	2.000000	-0.000330	-0.280000	229.000000	238.000000	0.789733	0.673733	1.140467	0.633850	0.165450	0.263000	NaN	NaN	NaN	0.992501	0.977464	1.983075	0.737356	0.224659	0.393153	NaN	NaN	NaN	0.864929	0.601061	0.093226	0.356178	0.125775	0.479046	0.067248	0.222864	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C	sp|Q9UNZ2|NSF1C_HUMAN	NSF1C_HUMAN	NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2	100.000000	0.014500	40555.200000	6.000000	10.000000	11.000000	Spectrum42192 scans:12570,	DLIHDQDEDEEEEEGQR	D[+28]LIHDQDEDEEEEEGQR	R	F	99.700000	45.300000	38.000000	41.100000	Dimethyl (+28)	2112.870000	3.000000	-0.004300	-2.000000	77.000000	93.000000	0.558667	0.115233	0.209967	NaN	NaN	NaN	NaN	NaN	NaN	0.702107	0.167183	0.365096	NaN	NaN	NaN	NaN	NaN	NaN	0.702107	0.167183	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C	sp|Q9UNZ2|NSF1C_HUMAN	NSF1C_HUMAN	NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2	100.000000	0.014500	40555.200000	6.000000	10.000000	11.000000	Spectrum42184 scans:12561,	DLIHDQDEDEEEEEGQR	D[+28]LIHDQDEDEEEEEGQR	R	F	99.700000	61.900000	40.100000	44.900000	Dimethyl (+28), Label:13C(6) (+6)	2118.890000	3.000000	-0.003200	-1.500000	77.000000	93.000000	0.558667	0.115233	0.209967	NaN	NaN	NaN	NaN	NaN	NaN	0.702107	0.167183	0.365096	NaN	NaN	NaN	NaN	NaN	NaN	0.702107	0.167183	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.030300	53123.900000	9.000000	17.000000	23.000000	Spectrum53136 scans:25150,	DLKAKGILFVGSGVSGGEEGAR	D[+28]LKAKGILFVGSGVSGGEEGAR	R	Y	99.700000	52.600000	53.800000	52.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2244.300000	3.000000	-0.004800	-2.100000	115.000000	136.000000	3.400467	2.879167	1.958433	75.254250	2922.470650	58.837750	NaN	NaN	NaN	4.273554	4.177145	3.405379	87.543115	3968.321882	87.955378	NaN	NaN	NaN	45.908334	1986.249513	0.242892	0.248100	0.327061	0.332911	0.067150	0.222222	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.030300	53123.900000	9.000000	17.000000	23.000000	Spectrum53150 scans:25165,	DLKAKGILFVGSGVSGGEEGAR	D[+28]LKAKGILFVGSGVSGGEEGAR	R	Y	99.700000	59.000000	54.500000	48.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2256.270000	3.000000	0.001400	0.640000	115.000000	136.000000	3.400467	2.879167	1.958433	75.254250	2922.470650	58.837750	NaN	NaN	NaN	4.273554	4.177145	3.405379	87.543115	3968.321882	87.955378	NaN	NaN	NaN	45.908334	1986.249513	0.242892	0.248100	0.326934	0.332782	0.067131	0.221584	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.008640	40405.300000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.35831.35831.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35831"	DLLGFALR	D[+28]LLGFALR	D	E	99.000000	65.000000	51.500000	35.600000	Dimethyl (+28)	931.550000	2.000000	0.000034	0.037000	215.000000	222.000000	7.703700	2.290900	0.353833	5.840100	0.514550	0.168250	NaN	NaN	NaN	9.681664	3.323677	0.615255	6.793776	0.698690	0.251514	NaN	NaN	NaN	8.237720	2.011183	0.110467	0.368093	0.148632	0.493541	0.067111	0.221372	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.027700	40405.300000	7.000000	17.000000	21.000000	Spectrum64122 scans:38200,	DLLGFALR	D[+28]LLGFALR	D	E	99.000000	65.200000	46.700000	35.400000	Dimethyl (+28), Label:13C(6) (+6)	937.570000	2.000000	0.000530	0.560000	215.000000	222.000000	7.703700	2.290900	0.353833	5.840100	0.514550	0.168250	NaN	NaN	NaN	9.681664	3.323677	0.615255	6.793776	0.698690	0.251514	NaN	NaN	NaN	8.237720	2.011183	0.110467	0.368093	0.148574	0.493350	0.066898	0.220738	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Nicotinamide phosphoribosyltransferase OS=Homo sapiens GN=NAMPT PE=1 SV=1	NAMPT_HUMAN	NAMPT_HUMAN	Nicotinamide phosphoribosyltransferase OS=Homo sapiens GN=NAMPT PE=1 SV=1	100.000000	0.004630	55504.500000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction6A.28082.28082.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28082"	DLLNCSFKCSY	D[+28]LLNC[+57]SFKC[+57]SY	R	V	99.400000	55.200000	49.100000	38.800000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57)	1469.680000	2.000000	-0.001300	-0.860000	393.000000	403.000000	2.048933	21.404600	10.081933	NaN	NaN	2.454700	NaN	NaN	NaN	2.575007	31.054164	17.530748	NaN	NaN	3.669482	NaN	NaN	NaN	2.575007	31.054164	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1	PCNA_HUMAN	PCNA_HUMAN	Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1 SV=1	100.000000	0.002630	28751.300000	2.000000	2.000000	2.000000	Spectrum57670 scans:30434,	DLSHIGDAVVISC	D[+28]LSHIGDAVVISC[+57]	R	A	98.800000	50.100000	48.700000	38.400000	Dimethyl (+28), Carbamidomethyl (+57)	1412.700000	2.000000	-0.000150	-0.100000	150.000000	162.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.069800	17285.000000	7.000000	24.000000	53.000000	Spectrum61900 scans:35652,	DLSLEEIQKKLEAAEER	D[+28]LSLEEIQKKLEAAEER	K	R	99.700000	46.800000	53.600000	41.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2098.200000	3.000000	-0.002100	-1.000000	44.000000	60.000000	11.690567	4.586433	0.411400	4.198150	4.578700	0.626550	NaN	NaN	NaN	14.692179	6.654077	0.715354	4.883699	6.217258	0.936617	NaN	NaN	NaN	9.787939	6.435668	0.210783	0.021597	0.282838	0.028912	0.066801	0.219899	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.069800	17285.000000	7.000000	24.000000	53.000000	Spectrum62008 scans:35778,	DLSLEEIQKKLEAAEER	D[+28]LSLEEIQKKLEAAEER	K	R	99.700000	65.800000	54.100000	45.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2110.180000	3.000000	0.003500	1.700000	44.000000	60.000000	11.690567	4.586433	0.411400	4.198150	4.578700	0.626550	NaN	NaN	NaN	14.692179	6.654077	0.715354	4.883699	6.217258	0.936617	NaN	NaN	NaN	9.787939	6.435668	0.210783	0.021597	0.282728	0.028901	0.066724	0.219690	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=4 SV=1	E7EMW7_HUMAN	E7EMW7_HUMAN	E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=4 SV=1	99.600000	0.002630	308558.600000	1.000000	2.000000	2.000000	Spectrum20041 scans:14621,	DLSLEVDR	D[+28]LSLEVDR	R	D	99.000000	53.700000	47.200000	16.800000	Dimethyl (+28)	973.510000	2.000000	-0.000082	-0.084000	2233.000000	2240.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=4 SV=1	UBR5_HUMAN	UBR5_HUMAN	E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=1 SV=2	99.600000	0.002630	309335.700000	1.000000	2.000000	2.000000	Spectrum20042 scans:14622,	DLSLEVDR	D[+28]LSLEVDR	R	D	99.000000	51.300000	47.700000	24.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	983.520000	2.000000	-0.000230	-0.230000	2239.000000	2246.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	N-alpha-acetyltransferase 15, NatA auxiliary subunit OS=Homo sapiens GN=NAA15 PE=1 SV=1	sp|Q9BXJ9|NAA15_HUMAN	NAA15_HUMAN	N-alpha-acetyltransferase 15, NatA auxiliary subunit OS=Homo sapiens GN=NAA15 PE=1 SV=1	100.000000	0.005760	101259.900000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.34327.34327.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34327"	DLSLLQIQMR	D[+28]LSLLQIQMR	R	D	99.700000	72.700000	54.300000	35.400000	Dimethyl (+28)	1243.690000	2.000000	-0.001500	-1.200000	119.000000	128.000000	6.687367	3.276567	0.425900	4.473100	6.678550	2.157200	NaN	NaN	NaN	8.404382	4.753700	0.740567	5.203548	9.068572	3.224755	NaN	NaN	NaN	6.803965	6.911136	0.147071	0.192630	0.197041	0.257285	1.000000	0.219066	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2	PSA_HUMAN	PSA_HUMAN	Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2	100.000000	0.007900	103261.100000	3.000000	5.000000	6.000000	Spectrum50003 scans:21560,	DLSLPPVDR	D[+28]LSLPPVDR	R	L	99.300000	56.300000	48.900000	32.100000	Dimethyl (+28), Label:13C(6) (+6)	1044.590000	2.000000	-0.000250	-0.240000	607.000000	615.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Isoform 2 of Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A	sp|P78559|MAP1A_HUMAN	MAP1A_HUMAN	Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A PE=1 SV=6	100.000000	0.026300	305468.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction2A.8052.8052.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8052"	DLSTEEVR	D[+28]LSTEEVR	R	L	99.000000	72.300000	50.000000	19.200000	Dimethyl (+28)	975.490000	2.000000	0.000014	0.015000	2465.000000	2472.000000	0.676767	0.315400	0.462100	2.189100	3.207550	2.382500	NaN	NaN	NaN	0.850530	0.457588	0.803512	2.546576	4.355421	3.561552	NaN	NaN	NaN	1.698553	2.406505	0.294791	0.433360	0.394647	0.578147	1.000000	0.217623	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Isoform 2 of Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A	sp|P78559-2|MAP1A_HUMAN	MAP1A_HUMAN	Isoform 2 of Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A	100.000000	0.026300	305654.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction2A.8030.8030.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8030"	DLSTEEVR	D[+28]LSTEEVR	R	L	99.000000	59.800000	50.100000	0.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	985.500000	2.000000	-0.000083	-0.084000	2465.000000	2472.000000	0.676767	0.315400	0.462100	2.189100	3.207550	2.382500	NaN	NaN	NaN	0.850530	0.457588	0.803512	2.546576	4.355421	3.561552	NaN	NaN	NaN	1.698553	2.406505	0.294791	0.433360	0.394495	0.577925	1.000000	0.217214	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Alpha-ketoglutarate-dependent dioxygenase FTO OS=Homo sapiens GN=FTO PE=1 SV=3	sp|Q9C0B1|FTO_HUMAN	FTO_HUMAN	Alpha-ketoglutarate-dependent dioxygenase FTO OS=Homo sapiens GN=FTO PE=1 SV=3	98.800000	0.002310	58264.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.39013.39013.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39013"	DLTDIVSELR	D[+28]LTDIVSELR	F	G	99.500000	61.200000	53.300000	39.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1197.650000	2.000000	-0.002800	-2.300000	488.000000	497.000000	1.102633	1.881533	6.163500	4.204950	15.379800	16.499400	NaN	NaN	NaN	1.385740	2.729761	10.717267	4.891610	20.883699	24.664624	NaN	NaN	NaN	3.138675	11.806730	0.324257	0.330351	0.433760	0.440384	1.000000	0.217011	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	N-alpha-acetyltransferase 10 OS=Homo sapiens GN=NAA10 PE=1 SV=1	NAA10_HUMAN	NAA10_HUMAN	N-alpha-acetyltransferase 10 OS=Homo sapiens GN=NAA10 PE=1 SV=1	97.400000	0.011500	26441.000000	1.000000	3.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.28649.28649.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28649"	DLTQMADELR	D[+28]LTQMADELR	R	R	99.700000	69.600000	50.500000	54.100000	Dimethyl (+28)	1218.590000	2.000000	-0.000440	-0.360000	150.000000	159.000000	0.593800	0.237033	0.414200	61.123900	11.164000	0.189000	NaN	NaN	NaN	0.746261	0.343892	0.720223	71.105308	15.159210	0.282532	NaN	NaN	NaN	35.925784	7.751551	0.452579	0.478116	0.605183	0.637120	1.000000	0.216807	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	N-alpha-acetyltransferase 10 OS=Homo sapiens GN=NAA10 PE=1 SV=1	NAA10_HUMAN	NAA10_HUMAN	N-alpha-acetyltransferase 10 OS=Homo sapiens GN=NAA10 PE=1 SV=1	97.400000	0.011500	26441.000000	1.000000	3.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.16081.16081.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16081"	DLTQMADELR	D[+28]LTQMADELR	R	R	99.700000	93.800000	49.700000	77.100000	Dimethyl (+28), Oxidation (+16)	1234.590000	2.000000	-0.000940	-0.760000	150.000000	159.000000	0.593800	0.237033	0.414200	61.123900	11.164000	0.189000	NaN	NaN	NaN	0.746261	0.343892	0.720223	71.105308	15.159210	0.282532	NaN	NaN	NaN	35.925784	7.751551	0.452579	0.478116	0.604950	0.636876	1.000000	0.216604	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	N-alpha-acetyltransferase 10 OS=Homo sapiens GN=NAA10 PE=1 SV=1	sp|P41227-2|NAA10_HUMAN	NAA10_HUMAN	Isoform 2 of N-alpha-acetyltransferase 10 OS=Homo sapiens GN=NAA10	97.400000	0.011500	0.000000	1.000000	3.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.28650.28650.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28650"	DLTQMADELR	D[+28]LTQMADELR	R	R	98.700000	48.600000	50.800000	34.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1228.600000	2.000000	-0.001200	-1.000000	0.000000	0.000000	0.593800	0.237033	0.414200	61.123900	11.164000	0.189000	NaN	NaN	NaN	0.746261	0.343892	0.720223	71.105308	15.159210	0.282532	NaN	NaN	NaN	35.925784	7.751551	0.452579	0.478116	0.604717	0.636632	1.000000	0.216199	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2	RL18A_HUMAN	RL18A_HUMAN	60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2	100.000000	0.009220	20744.600000	2.000000	5.000000	7.000000	Spectrum8258 scans:30862,	DLTTAGAVTQCYR	D[+28]LTTAGAVTQC[+57]YR	R	D	99.700000	89.000000	47.600000	70.900000	Dimethyl (+28), Carbamidomethyl (+57)	1482.710000	2.000000	-0.004500	-3.000000	99.000000	111.000000	0.503233	0.137600	0.275933	2.519150	2.657800	0.753900	NaN	NaN	NaN	0.632441	0.199632	0.479801	2.930522	3.608935	1.126990	NaN	NaN	NaN	1.781482	1.904284	0.364685	0.464820	0.487089	0.618691	1.000000	0.215998	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2	RL18A_HUMAN	RL18A_HUMAN	60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2	100.000000	0.009220	20744.600000	2.000000	5.000000	7.000000	Spectrum8255 scans:30857,	DLTTAGAVTQCYR	D[+28]LTTAGAVTQC[+57]YR	R	D	99.700000	82.300000	47.900000	69.900000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1492.720000	2.000000	-0.003400	-2.300000	99.000000	111.000000	0.503233	0.137600	0.275933	2.519150	2.657800	0.753900	NaN	NaN	NaN	0.632441	0.199632	0.479801	2.930522	3.608935	1.126990	NaN	NaN	NaN	1.781482	1.904284	0.364685	0.464820	0.486902	0.618454	1.000000	0.215796	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine/threonine-protein kinase OSR1 OS=Homo sapiens GN=OXSR1 PE=1 SV=1	OXSR1_HUMAN	OXSR1_HUMAN	Serine/threonine-protein kinase OSR1 OS=Homo sapiens GN=OXSR1 PE=1 SV=1	100.000000	0.003950	58005.400000	2.000000	3.000000	3.000000	Spectrum69662 scans:44633,	DLVIVAANLQKIVEEPQSNR	D[+28]LVIVAANLQKIVEEPQSNR	R	S	99.700000	52.200000	54.500000	45.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2309.310000	3.000000	0.003400	1.500000	478.000000	497.000000	25.099100	7.042600	0.382200	NaN	NaN	NaN	NaN	NaN	NaN	31.543421	10.217526	0.664580	NaN	NaN	NaN	NaN	NaN	NaN	31.543421	10.217526	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	SF3A3_HUMAN	SF3A3_HUMAN	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	100.000000	0.018400	58833.300000	3.000000	9.000000	14.000000	Spectrum18627 scans:10905,	DLYDDKDGLR	D[+28]LYDDKDGLR	R	K	99.700000	40.000000	49.800000	29.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1274.680000	3.000000	-0.000095	-0.074000	59.000000	68.000000	NaN	2.188933	99.319233	NaN	NaN	3.694900	NaN	NaN	0.380257	NaN	3.175742	172.699067	NaN	NaN	5.523432	NaN	NaN	0.182220	NaN	3.175742	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3	TYSY_HUMAN	TYSY_HUMAN	Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3	100.000000	0.009330	35699.300000	2.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.29810.29810.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29810"	DMESDYSGQGVDQLQR	D[+28]MESDYSGQGVDQLQR	R	V	99.700000	65.600000	45.800000	65.600000	Dimethyl (+28), Oxidation (+16)	1870.810000	2.000000	0.004900	2.600000	148.000000	163.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3	TYSY_HUMAN	TYSY_HUMAN	Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3	100.000000	0.009330	35699.300000	2.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.36401.36401.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36401"	DMESDYSGQGVDQLQR	D[+28]MESDYSGQGVDQLQR	R	V	99.700000	72.100000	46.100000	70.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1864.810000	2.000000	-0.008500	-4.600000	148.000000	163.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3	TYSY_HUMAN	TYSY_HUMAN	Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3	100.000000	0.009330	35699.300000	2.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.36344.36344.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36344"	DMESDYSGQGVDQLQR	D[+28]MESDYSGQGVDQLQR	R	V	99.700000	97.200000	46.500000	97.200000	Dimethyl (+28)	1854.810000	2.000000	-0.000220	-0.120000	148.000000	163.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2	H4_HUMAN	H4_HUMAN	Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2	100.000000	0.010500	11349.700000	3.000000	5.000000	8.000000	Spectrum18834 scans:11365,	DNIQGITKPAIR	D[+28]NIQGITKPAIR	R	R	98.800000	50.800000	49.200000	33.700000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1390.850000	2.000000	-0.000560	-0.400000	25.000000	36.000000	0.941833	3.467700	2.766867	NaN	7.365050	NaN	NaN	NaN	NaN	1.183654	5.030999	4.811105	NaN	10.000747	NaN	NaN	NaN	NaN	1.183654	7.515873	NaN	0.203256	NaN	0.269816	1.000000	0.214198	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1	sp|Q99460-2|PSMD1_HUMAN	PSMD1_HUMAN	Isoform 2 of 26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1	100.000000	0.001320	102242.900000	1.000000	1.000000	1.000000	Spectrum20997 scans:20112,	DNLEWLAR	D[+28]NLEWLAR	R	A	99.000000	53.200000	48.100000	24.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1053.550000	2.000000	-0.000150	-0.140000	388.000000	395.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	ARPC2_HUMAN	ARPC2_HUMAN	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	100.000000	0.025000	34315.700000	3.000000	7.000000	19.000000	Spectrum54808 scans:27005,	DNTINLIHTFR	D[+28]NTINLIHTFR	R	D	99.500000	38.400000	50.800000	25.100000	Dimethyl (+28), Label:13C(6) (+6)	1376.750000	3.000000	0.000023	0.017000	238.000000	248.000000	2.919500	0.704500	0.382967	0.475650	0.608200	0.631400	NaN	NaN	NaN	3.669096	1.022101	0.665913	0.553323	0.825854	0.943867	NaN	NaN	NaN	2.111210	0.923977	0.404712	0.067355	0.538478	0.089343	1.000000	0.213210	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	ARPC2_HUMAN	ARPC2_HUMAN	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	100.000000	0.025000	34315.700000	3.000000	7.000000	19.000000	Spectrum54787 scans:26982,	DNTINLIHTFR	D[+28]NTINLIHTFR	R	D	99.600000	40.300000	50.600000	26.500000	Dimethyl (+28)	1370.730000	3.000000	-0.000610	-0.440000	238.000000	248.000000	2.919500	0.704500	0.382967	0.475650	0.608200	0.631400	NaN	NaN	NaN	3.669096	1.022101	0.665913	0.553323	0.825854	0.943867	NaN	NaN	NaN	2.111210	0.923977	0.404712	0.067355	0.538271	0.089309	1.000000	0.213014	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	PLPP_HUMAN	PLPP_HUMAN	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	100.000000	0.011900	31680.800000	6.000000	9.000000	9.000000	Spectrum51929 scans:23801,	DPECLLVATDR	D[+28]PEC[+57]LLVATDR	R	D	98.700000	51.200000	48.800000	35.200000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1321.660000	2.000000	0.000200	0.150000	168.000000	178.000000	0.664200	0.963700	2.064867	1.145350	2.947200	2.625250	NaN	NaN	NaN	0.834737	1.398153	3.590448	1.332383	4.001901	3.924434	NaN	NaN	NaN	1.083560	2.700027	0.143699	0.286022	0.191048	0.379105	1.000000	0.212818	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	sp|P33993|MCM7_HUMAN	MCM7_HUMAN	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	100.000000	0.012500	81291.000000	2.000000	3.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.22736.22736.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22736"	DPELVDSICENAR	D[+28]PELVDSIC[+57]ENAR	D	R	98.500000	48.200000	49.400000	43.800000	Dimethyl (+28), Carbamidomethyl (+57)	1544.710000	2.000000	-0.004800	-3.100000	59.000000	71.000000	NaN	2.550933	NaN	1.467450	0.927000	0.753900	NaN	NaN	NaN	NaN	3.700938	NaN	1.707082	1.258741	1.126990	NaN	NaN	NaN	1.707082	2.479840	NaN	0.291290	NaN	0.385940	1.000000	0.212623	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC	sp|Q00610|CLH1_HUMAN	CLH1_HUMAN	Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5	100.000000	0.011900	191600.900000	7.000000	9.000000	9.000000	Spectrum6438 scans:26063,	DPHLACVAYER	D[+28]PHLAC[+57]VAYER	R	G	99.700000	62.800000	46.900000	54.300000	Dimethyl (+28), Carbamidomethyl (+57)	1357.650000	3.000000	0.000520	0.380000	913.000000	923.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	HTSF1_HUMAN	HTSF1_HUMAN	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	100.000000	0.030100	85836.600000	4.000000	8.000000	12.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.24608.24608.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24608"	DPLVLNEIR	D[+28]PLVLNEIR	D	E	99.500000	56.700000	53.400000	35.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1105.640000	2.000000	0.000620	0.560000	280.000000	288.000000	0.657100	0.202733	0.306833	0.620750	0.244850	0.396700	NaN	NaN	NaN	0.825814	0.294129	0.533530	0.722117	0.332473	0.593019	NaN	NaN	NaN	0.773965	0.313301	0.042584	0.038909	0.056550	0.051512	1.000000	0.212038	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	HTSF1_HUMAN	HTSF1_HUMAN	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	100.000000	0.035800	85836.600000	5.000000	8.000000	8.000000	Nsco_Tails_biological_replicate2_apoptosis.21331.21331.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21331"	DPLVLNEIR	D[+28]PLVLNEIR	D	E	98.500000	51.900000	53.200000	32.100000	Dimethyl (+28)	1095.630000	2.000000	0.000180	0.160000	280.000000	288.000000	0.657100	0.202733	0.306833	0.620750	0.244850	0.396700	NaN	NaN	NaN	0.825814	0.294129	0.533530	0.722117	0.332473	0.593019	NaN	NaN	NaN	0.773965	0.313301	0.042584	0.038909	0.056529	0.051493	1.000000	0.211844	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS PE=1 SV=5	SYEP_HUMAN	SYEP_HUMAN	Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS PE=1 SV=5	100.000000	0.006590	170575.200000	4.000000	4.000000	5.000000	Spectrum6444 scans:26084,	DQDLEPGAPSMGAK	D[+28]QDLEPGAPSMGAK	R	S	99.600000	68.900000	48.000000	44.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1478.710000	2.000000	-0.003500	-2.400000	1464.000000	1477.000000	2.010967	0.531933	0.289567	0.352000	1.438050	2.319850	NaN	NaN	NaN	2.527293	0.771738	0.503507	0.409481	1.952678	3.467897	NaN	NaN	NaN	1.468387	1.362208	0.397741	0.260390	0.527787	0.344473	1.000000	0.211650	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	SF3A3_HUMAN	SF3A3_HUMAN	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	100.000000	0.018400	58833.300000	3.000000	9.000000	14.000000	Spectrum13779 scans:2040,	DQINSDHR	D[+28]QINSDHR	R	T	99.000000	28.800000	44.800000	13.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1021.480000	3.000000	-0.000087	-0.085000	35.000000	42.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	SF3A3_HUMAN	SF3A3_HUMAN	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	100.000000	0.018400	58833.300000	3.000000	9.000000	14.000000	Spectrum13780 scans:2043,	DQINSDHR	D[+28]QINSDHR	R	T	99.000000	56.900000	44.300000	35.900000	Dimethyl (+28)	1011.470000	3.000000	-0.000630	-0.620000	35.000000	42.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum58396 scans:31303,	DQKKTQEQLALEMAELTAR	D[+28]QKKTQEQLALEMAELTAR	R	I	99.200000	46.800000	55.000000	30.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Oxidation (+16), Label:13C(6)15N(4) (+10)	2328.250000	3.000000	-0.005100	-2.200000	409.000000	427.000000	6.070933	10.638400	3.941867	1.205500	5.627050	4.244500	NaN	NaN	NaN	7.629676	15.434375	6.854228	1.402356	7.640777	6.345018	NaN	NaN	NaN	4.516016	11.537576	0.384279	0.084637	0.509339	0.111840	1.000000	0.211071	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum58405 scans:31313,	DQKKTQEQLALEMAELTAR	D[+28]QKKTQEQLALEMAELTAR	R	I	99.700000	44.300000	55.000000	31.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2312.260000	4.000000	-0.001600	-0.710000	409.000000	427.000000	6.070933	10.638400	3.941867	1.205500	5.627050	4.244500	NaN	NaN	NaN	7.629676	15.434375	6.854228	1.402356	7.640777	6.345018	NaN	NaN	NaN	4.516016	11.537576	0.384279	0.084637	0.509144	0.111797	1.000000	0.210878	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum49715 scans:21224,	DQKKTQEQLALEMAELTAR	D[+28]QKKTQEQLALEMAELTAR	R	I	99.700000	52.800000	54.800000	32.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Oxidation (+16), Label:13C(6) (+6)	2316.290000	3.000000	0.001800	0.790000	409.000000	427.000000	6.070933	10.638400	3.941867	1.205500	5.627050	4.244500	NaN	NaN	NaN	7.629676	15.434375	6.854228	1.402356	7.640777	6.345018	NaN	NaN	NaN	4.516016	11.537576	0.384279	0.084637	0.508950	0.111712	1.000000	0.210686	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum58401 scans:31308,	DQKKTQEQLALEMAELTAR	D[+28]QKKTQEQLALEMAELTAR	R	I	99.700000	53.200000	54.600000	32.400000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2300.300000	4.000000	0.002300	0.990000	409.000000	427.000000	6.070933	10.638400	3.941867	1.205500	5.627050	4.244500	NaN	NaN	NaN	7.629676	15.434375	6.854228	1.402356	7.640777	6.345018	NaN	NaN	NaN	4.516016	11.537576	0.384279	0.084637	0.508756	0.111627	1.000000	0.210303	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 4 of GRIP1-associated protein 1 OS=Homo sapiens GN=GRIPAP1	sp|Q4V328|GRAP1_HUMAN	GRAP1_HUMAN	GRIP1-associated protein 1 OS=Homo sapiens GN=GRIPAP1 PE=1 SV=1	100.000000	0.006590	95972.600000	2.000000	5.000000	5.000000	Spectrum16217 scans:5999,	DQLEQAQEER	D[+28]QLEQAQEER	R	D	98.600000	46.000000	45.800000	26.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1282.600000	2.000000	-0.000890	-0.690000	570.000000	579.000000	0.613700	3.681733	7.072933	0.756450	6.155700	8.122150	NaN	NaN	NaN	0.771271	5.341522	12.298615	0.879977	8.358612	12.141640	NaN	NaN	NaN	0.825624	6.850067	0.041850	0.137996	0.055385	0.181932	1.000000	0.210112	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 4 of GRIP1-associated protein 1 OS=Homo sapiens GN=GRIPAP1	sp|Q4V328|GRAP1_HUMAN	GRAP1_HUMAN	GRIP1-associated protein 1 OS=Homo sapiens GN=GRIPAP1 PE=1 SV=1	100.000000	0.006590	95972.600000	2.000000	5.000000	5.000000	Spectrum16213 scans:5991,	DQLEQAQEER	D[+28]QLEQAQEER	R	D	99.600000	59.100000	45.700000	33.700000	Dimethyl (+28)	1272.590000	2.000000	-0.001300	-1.000000	570.000000	579.000000	0.613700	3.681733	7.072933	0.756450	6.155700	8.122150	NaN	NaN	NaN	0.771271	5.341522	12.298615	0.879977	8.358612	12.141640	NaN	NaN	NaN	0.825624	6.850067	0.041850	0.137996	0.055364	0.181863	1.000000	0.209921	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Protein TFG OS=Homo sapiens GN=TFG PE=1 SV=2	TFG_HUMAN	TFG_HUMAN	Protein TFG OS=Homo sapiens GN=TFG PE=1 SV=2	99.900000	0.007080	43430.300000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.20385.20385.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20385"	DQVSGPPSAPAEDR	D[+28]QVSGPPSAPAEDR	D	S	99.700000	71.600000	51.800000	55.600000	Dimethyl (+28), Label:13C(6) (+6)	1458.710000	2.000000	0.000650	0.440000	190.000000	203.000000	NaN	0.076833	NaN	2.772600	NaN	NaN	NaN	NaN	NaN	NaN	0.111471	NaN	3.225360	NaN	NaN	NaN	NaN	NaN	3.225360	0.111471	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Protein TFG OS=Homo sapiens GN=TFG PE=1 SV=2	TFG_HUMAN	TFG_HUMAN	Protein TFG OS=Homo sapiens GN=TFG PE=1 SV=2	99.900000	0.007080	43430.300000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.20284.20284.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20284"	DQVSGPPSAPAEDR	D[+28]QVSGPPSAPAEDR	D	S	99.700000	76.800000	50.500000	60.900000	Dimethyl (+28)	1452.690000	2.000000	0.000780	0.540000	190.000000	203.000000	NaN	0.076833	NaN	2.772600	NaN	NaN	NaN	NaN	NaN	NaN	0.111471	NaN	3.225360	NaN	NaN	NaN	NaN	NaN	3.225360	0.111471	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Protein TFG OS=Homo sapiens GN=TFG PE=1 SV=2	sp|Q92734-2|TFG_HUMAN	TFG_HUMAN	Isoform 2 of Protein TFG OS=Homo sapiens GN=TFG	99.900000	0.007080	0.000000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.20326.20326.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20326"	DQVSGPPSAPAEDR	D[+28]QVSGPPSAPAEDR	D	S	99.700000	65.700000	50.200000	40.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1462.690000	2.000000	-0.007500	-5.100000	0.000000	0.000000	NaN	0.076833	NaN	2.772600	NaN	NaN	NaN	NaN	NaN	NaN	0.111471	NaN	3.225360	NaN	NaN	NaN	NaN	NaN	3.225360	0.111471	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.092200	99012.600000	4.000000	7.000000	7.000000	Nsco_Tails_biological_replicate_3_fraction2A.18863.18863.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18863"	DQYSVIFESGDR	D[+28]QYSVIFESGDR	R	T	99.700000	73.600000	49.400000	58.300000	Dimethyl (+28)	1442.670000	2.000000	-0.000590	-0.410000	304.000000	315.000000	2.623267	8.547233	4.171000	NaN	20.459450	NaN	NaN	NaN	NaN	3.296804	12.400474	7.252652	NaN	27.781180	NaN	NaN	NaN	NaN	3.296804	20.090827	NaN	0.000000	NaN	0.000000	1.000000	0.209162	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.027700	99012.600000	5.000000	14.000000	21.000000	Spectrum10835 scans:38861,	DQYSVIFESGDR	D[+28]QYSVIFESGDR	R	T	99.100000	51.600000	47.000000	32.000000	Dimethyl (+28), Label:13C(6) (+6)	1448.690000	2.000000	-0.001500	-1.000000	304.000000	315.000000	2.623267	8.547233	4.171000	NaN	20.459450	NaN	NaN	NaN	NaN	3.296804	12.400474	7.252652	NaN	27.781180	NaN	NaN	NaN	NaN	3.296804	20.090827	NaN	0.000000	NaN	0.000000	1.000000	0.208973	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.027700	99012.600000	5.000000	14.000000	21.000000	Spectrum20864 scans:18872,	DQYSVIFESGDR	D[+28]QYSVIFESGDR	R	T	99.700000	71.800000	45.900000	43.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1452.670000	2.000000	-0.002500	-1.700000	304.000000	315.000000	2.623267	8.547233	4.171000	NaN	20.459450	NaN	NaN	NaN	NaN	3.296804	12.400474	7.252652	NaN	27.781180	NaN	NaN	NaN	NaN	3.296804	20.090827	NaN	0.000000	NaN	0.000000	1.000000	0.208785	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2	sp|Q96RS6|NUDC1_HUMAN	NUDC1_HUMAN	NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2	100.000000	0.005270	66740.000000	3.000000	4.000000	4.000000	Spectrum38060 scans:7791,	DSAQCAAIAER	D[+28]SAQC[+57]AAIAER	R	L	99.100000	54.300000	45.700000	37.700000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1228.580000	2.000000	0.000440	0.360000	372.000000	382.000000	4.271533	0.190400	0.423833	4.495850	1.724700	1.279150	5.987329	NaN	NaN	5.368271	0.276236	0.736973	5.230013	2.341911	1.912176	4.004500	NaN	NaN	4.867595	1.309073	0.007834	0.425254	0.010329	0.558528	0.052055	0.208408	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2	sp|Q96RS6|NUDC1_HUMAN	NUDC1_HUMAN	NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2	100.000000	0.005270	66740.000000	3.000000	4.000000	4.000000	Spectrum38051 scans:7780,	DSAQCAAIAER	D[+28]SAQC[+57]AAIAER	R	L	99.100000	59.600000	46.200000	40.500000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1224.580000	2.000000	-0.002800	-2.200000	372.000000	382.000000	4.271533	0.190400	0.423833	4.495850	1.724700	1.279150	5.987329	NaN	NaN	5.368271	0.276236	0.736973	5.230013	2.341911	1.912176	4.004500	NaN	NaN	4.867595	1.309073	0.007834	0.425254	0.010325	0.558317	0.051884	0.208221	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1	sp|Q14980|NUMA1_HUMAN	NUMA1_HUMAN	Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1 PE=1 SV=2	100.000000	0.007900	238241.600000	6.000000	6.000000	6.000000	Spectrum1026 scans:11775,	DSAQTSVTQAQR	D[+28]SAQTSVTQAQR	R	E	99.700000	96.700000	48.700000	64.300000	Dimethyl (+28), Label:13C(6) (+6)	1324.670000	2.000000	-0.002200	-1.600000	632.000000	643.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.089300	15036.300000	4.000000	11.000000	31.000000	Nsco_Tails_biological_replicate1_apoptosis.34696.34696.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34696"	DSLLQDGEFSMDLR	DSLLQDGEFSMDLR	R	T	99.300000	51.500000	49.300000	51.500000	Label:13C(6)15N(4) (+10)	1634.750000	2.000000	-0.003400	-2.100000	76.000000	89.000000	0.821300	0.301600	0.413733	0.801300	2.376100	2.492850	NaN	NaN	NaN	1.032173	0.437566	0.719411	0.932151	3.226424	3.726512	NaN	NaN	NaN	0.982162	1.831995	0.032388	0.414185	0.042636	0.543374	0.734392	0.207660	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.089300	15036.300000	4.000000	11.000000	31.000000	Nsco_Tails_biological_replicate1_apoptosis.28961.28961.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28961"	DSLLQDGEFSMDLR	DSLLQDGEFSMDLR	R	T	99.700000	81.800000	49.700000	57.700000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1678.770000	2.000000	-0.006000	-3.600000	76.000000	89.000000	0.821300	0.301600	0.413733	0.801300	2.376100	2.492850	NaN	NaN	NaN	1.032173	0.437566	0.719411	0.932151	3.226424	3.726512	NaN	NaN	NaN	0.982162	1.831995	0.032388	0.414185	0.042603	0.543168	0.725183	0.207474	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.089300	15036.300000	4.000000	11.000000	31.000000	Nsco_Tails_biological_replicate1_apoptosis.30050.30050.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30050"	DSLLQDGEFSMDLR	DSLLQDGEFSMDLR	R	T	99.700000	89.000000	49.500000	87.500000	Dimethyl (+28), Oxidation (+16)	1668.760000	2.000000	-0.003600	-2.200000	76.000000	89.000000	0.821300	0.301600	0.413733	0.801300	2.376100	2.492850	NaN	NaN	NaN	1.032173	0.437566	0.719411	0.932151	3.226424	3.726512	NaN	NaN	NaN	0.982162	1.831995	0.032388	0.414185	0.042587	0.542963	0.698892	0.207288	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.089300	15036.300000	4.000000	11.000000	31.000000	Nsco_Tails_biological_replicate1_apoptosis.35111.35111.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35111"	DSLLQDGEFSMDLR	DSLLQDGEFSMDLR	R	T	99.700000	110.000000	50.600000	94.800000	Dimethyl (+28)	1652.770000	2.000000	-0.002000	-1.200000	76.000000	89.000000	0.821300	0.301600	0.413733	0.801300	2.376100	2.492850	NaN	NaN	NaN	1.032173	0.437566	0.719411	0.932151	3.226424	3.726512	NaN	NaN	NaN	0.982162	1.831995	0.032388	0.414185	0.042571	0.542758	0.696787	0.207102	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.049600	15036.300000	3.000000	12.000000	21.000000	NSco_TAILS_20150124_Protein_complex_100Kda.63759.63759.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=63759"	DSLLQDGEFSMDLR	DSLLQDGEFSMDLR	R	T	99.700000	103.000000	51.000000	84.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1662.780000	2.000000	-0.002800	-1.700000	76.000000	89.000000	0.821300	0.301600	0.413733	0.801300	2.376100	2.492850	NaN	NaN	NaN	1.032173	0.437566	0.719411	0.932151	3.226424	3.726512	NaN	NaN	NaN	0.982162	1.831995	0.032388	0.414185	0.042555	0.542553	0.664751	0.206548	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.162000	15036.300000	9.000000	26.000000	123.000000	Spectrum61144 scans:34717,	DSLLQDGEFSMDLR	DSLLQDGEFSMDLR	R	T	99.700000	86.700000	47.400000	79.200000	Dimethyl (+28), Oxidation (+16), Label:13C(6) (+6)	1674.780000	2.000000	-0.002100	-1.300000	76.000000	89.000000	0.821300	0.301600	0.413733	0.801300	2.376100	2.492850	NaN	NaN	NaN	1.032173	0.437566	0.719411	0.932151	3.226424	3.726512	NaN	NaN	NaN	0.982162	1.831995	0.032388	0.414185	0.042539	0.542348	0.662846	0.206179	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.162000	15036.300000	9.000000	26.000000	123.000000	Spectrum63096 scans:37057,	DSLLQDGEFSMDLR	DSLLQDGEFSMDLR	R	T	99.700000	103.000000	48.000000	85.500000	Dimethyl (+28), Label:13C(6) (+6)	1658.790000	2.000000	-0.003900	-2.400000	76.000000	89.000000	0.821300	0.301600	0.413733	0.801300	2.376100	2.492850	NaN	NaN	NaN	1.032173	0.437566	0.719411	0.932151	3.226424	3.726512	NaN	NaN	NaN	0.982162	1.831995	0.032388	0.414185	0.042523	0.542144	0.660952	0.205996	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine/threonine-protein kinase OSR1 OS=Homo sapiens GN=OXSR1 PE=1 SV=1	OXSR1_HUMAN	OXSR1_HUMAN	Serine/threonine-protein kinase OSR1 OS=Homo sapiens GN=OXSR1 PE=1 SV=1	100.000000	0.003950	58005.400000	2.000000	3.000000	3.000000	Spectrum62217 scans:36035,	DTAEGVSQELISAGLVDGR	D[+28]TAEGVSQELISAGLVDGR	R	D	99.700000	103.000000	51.900000	93.000000	Dimethyl (+28)	1943.980000	2.000000	-0.001400	-0.730000	459.000000	477.000000	3.460100	1.414733	0.327867	65.964750	2.771750	2.837950	NaN	NaN	NaN	4.348498	2.052520	0.570104	76.736658	3.763664	4.242395	NaN	NaN	NaN	40.542578	2.908092	0.238869	0.182157	0.313493	0.238342	0.659069	0.205447	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine/threonine-protein kinase OSR1 OS=Homo sapiens GN=OXSR1 PE=1 SV=1	OXSR1_HUMAN	OXSR1_HUMAN	Serine/threonine-protein kinase OSR1 OS=Homo sapiens GN=OXSR1 PE=1 SV=1	100.000000	0.003950	58005.400000	2.000000	3.000000	3.000000	Spectrum62202 scans:36017,	DTAEGVSQELISAGLVDGR	D[+28]TAEGVSQELISAGLVDGR	R	D	99.700000	69.600000	52.100000	56.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1953.990000	3.000000	-0.000720	-0.370000	459.000000	477.000000	3.460100	1.414733	0.327867	65.964750	2.771750	2.837950	NaN	NaN	NaN	4.348498	2.052520	0.570104	76.736658	3.763664	4.242395	NaN	NaN	NaN	40.542578	2.908092	0.238869	0.182157	0.313374	0.238252	0.642593	0.205083	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.034200	64268.600000	8.000000	18.000000	26.000000	Spectrum12649 scans:46602,	DTGIFLDLMH	D[+28]TGIFLDLMH	R	L	99.600000	60.100000	46.500000	51.900000	Dimethyl (+28), Oxidation (+16)	1204.580000	2.000000	-0.001400	-1.100000	145.000000	154.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Structural maintenance of chromosomes protein OS=Homo sapiens GN=SMC4 PE=3 SV=1	E9PD53_HUMAN	E9PD53_HUMAN	Structural maintenance of chromosomes protein OS=Homo sapiens GN=SMC4 PE=3 SV=1	100.000000	0.003950	144442.800000	1.000000	2.000000	3.000000	Spectrum20177 scans:15078,	DTLVADNLDQATR	D[+28]TLVADNLDQATR	R	V	99.700000	77.800000	49.300000	63.600000	Dimethyl (+28)	1458.730000	2.000000	-0.002800	-1.900000	689.000000	701.000000	1.108767	0.679633	0.594633	NaN	0.601800	NaN	NaN	NaN	NaN	1.393448	0.986024	1.033965	NaN	0.817163	NaN	NaN	NaN	NaN	1.393448	0.901594	NaN	0.059443	NaN	0.077690	1.000000	0.204358	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Structural maintenance of chromosomes protein OS=Homo sapiens GN=SMC4 PE=3 SV=1	E9PD53_HUMAN	E9PD53_HUMAN	Structural maintenance of chromosomes protein OS=Homo sapiens GN=SMC4 PE=3 SV=1	100.000000	0.003950	144442.800000	1.000000	2.000000	3.000000	Spectrum20175 scans:15072,	DTLVADNLDQATR	D[+28]TLVADNLDQATR	R	V	99.700000	88.500000	49.500000	71.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1468.740000	2.000000	-0.001800	-1.200000	689.000000	701.000000	1.108767	0.679633	0.594633	NaN	0.601800	NaN	NaN	NaN	NaN	1.393448	0.986024	1.033965	NaN	0.817163	NaN	NaN	NaN	NaN	1.393448	0.901594	NaN	0.059443	NaN	0.077661	1.000000	0.204178	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2	RL10A_HUMAN	RL10A_HUMAN	60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2	100.000000	0.007900	24814.000000	2.000000	3.000000	6.000000	Spectrum6935 scans:27374,	DTLYEAVR	D[+28]TLYEAVR	R	E	99.000000	56.400000	47.600000	18.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1003.520000	2.000000	-0.000350	-0.350000	8.000000	15.000000	0.403133	2.745100	16.141633	0.112700	0.105750	0.992100	NaN	NaN	1.030714	0.506640	3.982639	28.067524	0.131104	0.143594	1.483070	NaN	NaN	0.493921	0.318872	2.063116	0.338797	0.477057	0.443800	0.623028	0.613616	0.203998	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2	RL10A_HUMAN	RL10A_HUMAN	60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2	100.000000	0.007900	24814.000000	2.000000	3.000000	6.000000	Spectrum6927 scans:27354,	DTLYEAVR	D[+28]TLYEAVR	R	E	99.000000	59.100000	47.400000	33.000000	Dimethyl (+28)	993.510000	2.000000	0.000120	0.120000	8.000000	15.000000	0.403133	2.745100	16.141633	0.112700	0.105750	0.992100	NaN	NaN	1.030714	0.506640	3.982639	28.067524	0.131104	0.143594	1.483070	NaN	NaN	0.493921	0.318872	2.063116	0.338797	0.477057	0.443633	0.622794	0.482951	0.202924	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Homo sapiens GN=GFPT1	sp|Q06210-2|GFPT1_HUMAN	GFPT1_HUMAN	Isoform 2 of Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Homo sapiens GN=GFPT1	100.000000	0.013400	76742.400000	3.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.12574.12574.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12574"	DVAAVVDGR	D[+28]VAAVVDGR	D	L	99.700000	59.700000	51.400000	29.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	938.510000	2.000000	-0.000530	-0.570000	280.000000	288.000000	17.759367	0.278900	0.118700	0.813200	0.757700	0.964750	NaN	NaN	0.843700	22.319174	0.404633	0.206399	0.945994	1.028855	1.442186	NaN	NaN	0.404303	11.632584	0.716744	0.439955	0.261456	0.575875	0.341201	0.481944	0.202746	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3	sp|P55735-3|SEC13_HUMAN	SEC13_HUMAN	Isoform 3 of Protein SEC13 homolog OS=Homo sapiens GN=SEC13	100.000000	0.001320	0.000000	1.000000	1.000000	1.000000	Spectrum63062 scans:37019,	DVAWAPSIGLPTSTIASCSQDGR	D[+28]VAWAPSIGLPTSTIASC[+57]SQDGR	R	V	99.700000	51.400000	52.100000	41.700000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	2422.180000	3.000000	-0.006800	-2.800000	0.000000	0.000000	NaN	13.791867	2.052833	3.893950	0.488800	0.220400	NaN	NaN	NaN	NaN	20.009479	3.569524	4.529824	0.663725	0.329472	NaN	NaN	NaN	4.529824	10.336602	NaN	0.457808	NaN	0.597216	1.000000	0.202569	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1	ZC3HF_HUMAN	ZC3HF_HUMAN	Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1	100.000000	0.009220	48585.700000	2.000000	7.000000	7.000000	Spectrum10919 scans:39163,	DVDETGITVASLER	D[+28]VDETGITVASLER	R	F	99.700000	91.900000	50.000000	61.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1541.780000	2.000000	-0.004300	-2.800000	341.000000	354.000000	0.937733	4.150767	3.963533	2.602600	2.323750	0.993400	NaN	NaN	NaN	1.178501	6.022004	6.891903	3.027599	3.155340	1.485014	NaN	NaN	NaN	2.103050	4.588672	0.263682	0.192743	0.344884	0.251341	0.473074	0.202038	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1	ZC3HF_HUMAN	ZC3HF_HUMAN	Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1	100.000000	0.009220	48585.700000	2.000000	7.000000	7.000000	Spectrum10972 scans:39346,	DVDETGITVASLER	D[+28]VDETGITVASLER	R	F	99.700000	88.300000	49.800000	72.300000	Dimethyl (+28)	1531.770000	2.000000	-0.003200	-2.100000	341.000000	354.000000	0.937733	4.150767	3.963533	2.602600	2.323750	0.993400	NaN	NaN	NaN	1.178501	6.022004	6.891903	3.027599	3.155340	1.485014	NaN	NaN	NaN	2.103050	4.588672	0.263682	0.192743	0.344624	0.251247	0.472109	0.201862	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1	ZC3HF_HUMAN	ZC3HF_HUMAN	Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1	100.000000	0.009220	48585.700000	2.000000	7.000000	7.000000	Spectrum54804 scans:27000,	DVDETGITVASLER	D[+28]VDETGITVASLER	R	F	99.700000	91.800000	50.600000	76.300000	Dimethyl (+28), Label:13C(6) (+6)	1537.790000	2.000000	-0.001700	-1.100000	341.000000	354.000000	0.937733	4.150767	3.963533	2.602600	2.323750	0.993400	NaN	NaN	NaN	1.178501	6.022004	6.891903	3.027599	3.155340	1.485014	NaN	NaN	NaN	2.103050	4.588672	0.263682	0.192743	0.344494	0.251152	0.471147	0.201686	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	E7ENZ3_HUMAN	E7ENZ3_HUMAN	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	100.000000	0.018400	53831.900000	4.000000	9.000000	14.000000	Spectrum57205 scans:29871,	DVDFELIKVEGK	D[+28]VDFELIKVEGK	R	V	99.700000	48.800000	50.700000	46.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1482.880000	3.000000	-0.000370	-0.250000	148.000000	159.000000	67.090133	24.937933	0.362533	6.205750	NaN	NaN	NaN	NaN	NaN	84.315864	36.180385	0.630383	7.219136	NaN	NaN	NaN	NaN	NaN	45.767500	36.180385	0.101933	NaN	0.133123	NaN	0.452707	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6	sp|Q15084|PDIA6_HUMAN	PDIA6_HUMAN	Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1	100.000000	0.008960	48104.300000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.22587.22587.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22587"	DVIELTPSNFNR	D[+28]VIELTPSNFNR	D	E	99.700000	61.800000	54.100000	41.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1441.740000	2.000000	-0.001200	-0.820000	26.000000	37.000000	2.000200	0.275300	0.303567	1.006250	0.541000	0.540950	NaN	NaN	NaN	2.513761	0.399410	0.527850	1.170569	0.734605	0.808655	NaN	NaN	NaN	1.842165	0.567008	0.222559	0.182964	0.290549	0.238231	0.449191	0.201334	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1	SYQ_HUMAN	SYQ_HUMAN	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1	100.000000	0.005270	87781.900000	4.000000	4.000000	4.000000	Spectrum17675 scans:8747,	DVLNDTAPR	D[+28]VLNDTAPR	R	A	99.400000	61.300000	47.500000	36.900000	Dimethyl (+28)	1027.530000	2.000000	0.000640	0.620000	559.000000	567.000000	0.782533	0.266367	0.381200	26.277250	0.977750	0.499000	NaN	NaN	1.181200	0.983453	0.386449	0.662841	30.568271	1.327653	0.745945	NaN	NaN	0.566034	15.775862	0.857051	0.437592	0.319677	0.571059	0.416084	0.444872	0.201159	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Cleavage and polyadenylation-specificity factor subunit 7 (Fragment) OS=Homo sapiens GN=CPSF7 PE=4 SV=1	C9J286_HUMAN	C9J286_HUMAN	Cleavage and polyadenylation-specificity factor subunit 7 (Fragment) OS=Homo sapiens GN=CPSF7 PE=4 SV=1	97.700000	0.002330	16152.800000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.24108.24108.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24108"	DVLTATSQPSDDR	D[+28]VLTATSQPSDDR	D	S	99.700000	66.800000	51.200000	48.700000	Dimethyl (+28)	1431.690000	2.000000	0.001100	0.750000	33.000000	45.000000	1.169267	NaN	NaN	3.584200	NaN	NaN	NaN	NaN	NaN	1.469482	NaN	NaN	4.169493	NaN	NaN	NaN	NaN	NaN	2.819487	NaN	0.284285	NaN	0.370853	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	RS11_HUMAN	RS11_HUMAN	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	100.000000	0.015800	18413.300000	4.000000	11.000000	12.000000	Spectrum11962 scans:43020,	DVQIGDIVTVGECR	D[+28]VQIGDIVTVGEC[+57]R	R	P	99.600000	39.400000	50.100000	23.100000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1597.800000	3.000000	0.000700	0.440000	119.000000	132.000000	29.335033	1.947100	0.417967	0.315550	1.472000	1.693400	NaN	NaN	NaN	36.866952	2.824886	0.726772	0.367079	1.998778	2.531430	NaN	NaN	NaN	18.617015	2.411832	0.476642	0.107981	0.621551	0.140440	0.438131	0.200115	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	RS11_HUMAN	RS11_HUMAN	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	100.000000	0.015800	18413.300000	4.000000	11.000000	12.000000	Spectrum11963 scans:43023,	DVQIGDIVTVGECR	D[+28]VQIGDIVTVGEC[+57]R	R	P	99.700000	78.800000	49.700000	64.400000	Dimethyl (+28), Carbamidomethyl (+57)	1587.790000	2.000000	-0.004100	-2.600000	119.000000	132.000000	29.335033	1.947100	0.417967	0.315550	1.472000	1.693400	NaN	NaN	NaN	36.866952	2.824886	0.726772	0.367079	1.998778	2.531430	NaN	NaN	NaN	18.617015	2.411832	0.476642	0.107981	0.621317	0.140387	0.426028	0.199942	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	RS11_HUMAN	RS11_HUMAN	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	100.000000	0.015800	18413.300000	4.000000	11.000000	12.000000	Spectrum12875 scans:48199,	DVQIGDIVTVGECRPL	D[+28]VQIGDIVTVGEC[+57]RPL	R	S	99.700000	77.400000	52.100000	61.000000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1807.930000	2.000000	-0.003800	-2.100000	119.000000	134.000000	0.406367	0.331200	0.777867	11.539950	57.028050	4.945300	NaN	NaN	NaN	0.510703	0.480511	1.352576	13.424400	77.436418	7.392630	NaN	NaN	NaN	6.967552	38.958464	0.467516	0.469433	0.609193	0.609403	0.416067	0.199425	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	RS11_HUMAN	RS11_HUMAN	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	100.000000	0.015800	18413.300000	4.000000	11.000000	12.000000	Spectrum12873 scans:48194,	DVQIGDIVTVGECRPL	D[+28]VQIGDIVTVGEC[+57]RPL	R	S	99.700000	86.600000	51.900000	65.700000	Dimethyl (+28), Carbamidomethyl (+57)	1797.930000	2.000000	-0.004600	-2.500000	119.000000	134.000000	0.406367	0.331200	0.777867	11.539950	57.028050	4.945300	NaN	NaN	NaN	0.510703	0.480511	1.352576	13.424400	77.436418	7.392630	NaN	NaN	NaN	6.967552	38.958464	0.467516	0.469433	0.608964	0.609175	0.412359	0.199254	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	RS11_HUMAN	RS11_HUMAN	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	100.000000	0.015800	18413.300000	4.000000	11.000000	12.000000	Spectrum12888 scans:48266,	DVQIGDIVTVGECRPL	D[+28]VQIGDIVTVGEC[+57]RPL	R	S	99.700000	93.900000	52.400000	71.500000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1803.950000	2.000000	-0.004100	-2.300000	119.000000	134.000000	0.406367	0.331200	0.777867	11.539950	57.028050	4.945300	NaN	NaN	NaN	0.510703	0.480511	1.352576	13.424400	77.436418	7.392630	NaN	NaN	NaN	6.967552	38.958464	0.467516	0.469433	0.608735	0.608947	0.411625	0.199082	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.032900	140943.500000	9.000000	17.000000	25.000000	Spectrum7411 scans:28509,	DVVQAYPEVR	D[+28]VVQAYPEVR	R	I	98.800000	56.000000	49.600000	33.800000	Dimethyl (+28), Label:13C(6) (+6)	1208.650000	2.000000	0.000670	0.550000	529.000000	538.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.032900	140943.500000	9.000000	17.000000	25.000000	Spectrum7427 scans:28564,	DVVQAYPEVR	D[+28]VVQAYPEVR	R	I	99.200000	55.300000	49.200000	41.800000	Dimethyl (+28)	1202.630000	2.000000	-0.000820	-0.680000	529.000000	538.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Queuine tRNA-ribosyltransferase OS=Homo sapiens GN=QTRT1 PE=1 SV=3	TGT_HUMAN	TGT_HUMAN	Queuine tRNA-ribosyltransferase OS=Homo sapiens GN=QTRT1 PE=1 SV=3	100.000000	0.005760	44030.100000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.11132.11132.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11132"	DVVSSTVTGPR	D[+28]VVSSTVTGPR	D	V	98.700000	50.800000	52.900000	37.500000	Dimethyl (+28)	1144.610000	2.000000	-0.000850	-0.750000	160.000000	170.000000	1.063233	0.642800	1.017867	8.528800	2.213300	0.297000	NaN	NaN	NaN	1.336224	0.932585	1.769895	9.921536	3.005364	0.443979	NaN	NaN	NaN	5.628880	1.968974	0.414773	0.308450	0.539454	0.399672	0.396119	0.197047	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=2 SV=1	sp|P61978|HNRPK_HUMAN	HNRPK_HUMAN	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=1 SV=1	100.000000	0.017100	50960.500000	4.000000	8.000000	13.000000	Spectrum1454 scans:13158,	DYDDMSPR	NaN	R	R	99.000000	41.500000	38.200000	13.000000	Dimethyl (+28), Oxidation (+16), Label:13C(6) (+6)	1047.430000	2.000000	-0.000770	-0.730000	279.000000	286.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Thioredoxin-dependent peroxide reductase, mitochondrial OS=Homo sapiens GN=PRDX3 PE=1 SV=3	PRDX3_HUMAN	PRDX3_HUMAN	Thioredoxin-dependent peroxide reductase, mitochondrial OS=Homo sapiens GN=PRDX3 PE=1 SV=3	100.000000	0.005760	27674.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.37033.37033.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37033"	DYGVLLEGSGLALR	D[+28]YGVLLEGSGLALR	R	G	99.700000	77.600000	55.700000	60.200000	Dimethyl (+28)	1489.820000	2.000000	0.001500	1.000000	171.000000	184.000000	0.682267	0.460300	0.697267	1.014000	0.488100	0.756900	NaN	NaN	NaN	0.857442	0.667811	1.212427	1.179584	0.662774	1.131475	NaN	NaN	NaN	1.018513	0.665293	0.099850	0.002410	0.129622	0.003120	0.359772	0.196712	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Thioredoxin-dependent peroxide reductase, mitochondrial OS=Homo sapiens GN=PRDX3 PE=1 SV=3	PRDX3_HUMAN	PRDX3_HUMAN	Thioredoxin-dependent peroxide reductase, mitochondrial OS=Homo sapiens GN=PRDX3 PE=1 SV=3	100.000000	0.003950	27674.700000	1.000000	2.000000	3.000000	Spectrum65497 scans:39729,	DYGVLLEGSGLALR	D[+28]YGVLLEGSGLALR	R	G	99.700000	84.800000	51.400000	65.000000	Dimethyl (+28), Label:13C(6) (+6)	1495.830000	2.000000	-0.001300	-0.860000	171.000000	184.000000	0.682267	0.460300	0.697267	1.014000	0.488100	0.756900	NaN	NaN	NaN	0.857442	0.667811	1.212427	1.179584	0.662774	1.131475	NaN	NaN	NaN	1.018513	0.665293	0.099850	0.002410	0.129574	0.003119	0.359213	0.196378	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4	sp|O75083|WDR1_HUMAN	WDR1_HUMAN	WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4	100.000000	0.011900	66175.200000	4.000000	6.000000	9.000000	Spectrum48934 scans:20328,	DYSGQGVVKLDVQPK	D[+28]YSGQGVVKLDVQPK	R	C	99.200000	36.400000	52.200000	35.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1724.000000	3.000000	0.000800	0.460000	397.000000	411.000000	8.711933	NaN	NaN	0.527300	10.895650	NaN	NaN	NaN	NaN	10.948766	NaN	NaN	0.613407	14.794827	NaN	NaN	NaN	NaN	5.781087	14.794827	0.460998	NaN	0.598005	NaN	0.358656	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform D of Constitutive coactivator of PPAR-gamma-like protein 1 OS=Homo sapiens GN=FAM120A	sp|Q9NZB2-4|F120A_HUMAN	F120A_HUMAN	Isoform D of Constitutive coactivator of PPAR-gamma-like protein 1 OS=Homo sapiens GN=FAM120A	99.900000	0.001320	117389.500000	1.000000	1.000000	1.000000	Spectrum10057 scans:36283,	EAALEAAVLNKEE	E[+28]AALEAAVLNKEE	R	-	99.300000	60.200000	51.000000	41.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1449.780000	2.000000	-0.002000	-1.400000	1060.000000	1072.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	sp|P50995-2|ANX11_HUMAN	ANX11_HUMAN	Isoform 2 of Annexin A11 OS=Homo sapiens GN=ANXA11	100.000000	0.008640	0.000000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.35158.35158.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35158"	EACLIEILASR	E[+28]AC[+57]LIEILASR	D	S	99.100000	62.500000	54.400000	44.700000	Dimethyl (+28), Carbamidomethyl (+57)	1301.710000	2.000000	0.004000	3.100000	0.000000	0.000000	1.198133	1.402600	1.118267	0.320250	3.072750	32.597000	NaN	NaN	NaN	1.505760	2.034916	1.944473	0.372546	4.172381	48.728605	NaN	NaN	NaN	0.939153	3.103649	0.345592	0.211122	0.447966	0.272949	0.354262	0.193747	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1	sp|Q14152-2|EIF3A_HUMAN	EIF3A_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit A OS=Homo sapiens GN=EIF3A	100.000000	0.007900	0.000000	4.000000	6.000000	6.000000	Spectrum15164 scans:4199,	EAELQKVR	NaN	R	K	99.000000	41.000000	48.500000	10.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1045.630000	3.000000	-0.000025	-0.024000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	C1QBP_HUMAN	C1QBP_HUMAN	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	100.000000	0.010000	31344.600000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.24527.24527.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24527"	EAESDIFSIR	E[+28]AESDIFSIR	D	E	99.600000	54.700000	51.200000	26.200000	Dimethyl (+28)	1193.590000	2.000000	0.000150	0.130000	198.000000	207.000000	0.751900	0.390600	0.649400	1.266750	0.975500	0.770600	2.010971	NaN	NaN	0.944954	0.566689	1.129195	1.473608	1.324598	1.151955	1.344996	NaN	NaN	1.254519	0.945643	0.015720	0.242642	0.020361	0.313349	0.024080	0.191978	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	C1QBP_HUMAN	C1QBP_HUMAN	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	100.000000	0.017900	31344.600000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.21527.21527.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21527"	EAESDIFSIR	E[+28]AESDIFSIR	D	E	99.700000	66.400000	52.200000	38.600000	Dimethyl (+28), Label:13C(6) (+6)	1199.610000	2.000000	-0.000170	-0.140000	198.000000	207.000000	0.751900	0.390600	0.649400	1.266750	0.975500	0.770600	2.010971	NaN	NaN	0.944954	0.566689	1.129195	1.473608	1.324598	1.151955	1.344996	NaN	NaN	1.254519	0.945643	0.015720	0.242642	0.020354	0.313232	0.023790	0.191819	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.069800	17285.000000	7.000000	24.000000	53.000000	Spectrum45714 scans:16612,	EAEVLKQLAEKR	NaN	H	E	99.000000	25.500000	47.900000	15.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1510.960000	4.000000	-0.001300	-0.830000	65.000000	76.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.069800	17285.000000	7.000000	24.000000	53.000000	Spectrum45717 scans:16615,	EAEVLKQLAEKR	NaN	H	E	99.300000	32.000000	49.900000	17.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1522.930000	4.000000	-0.002300	-1.500000	65.000000	76.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	sp|Q07955-3|SRSF1_HUMAN	SRSF1_HUMAN	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	100.000000	0.017100	22442.200000	5.000000	9.000000	13.000000	Spectrum19933 scans:14150,	EAGDVCYADVYR	E[+28]AGDVC[+57]YADVYR	R	D	99.700000	63.400000	42.400000	51.200000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1454.640000	2.000000	-0.000920	-0.630000	143.000000	154.000000	0.375600	0.198533	0.514400	NaN	NaN	1.209400	13.580557	228.933486	65.593843	0.472037	0.288036	0.894453	NaN	NaN	1.807908	9.083073	97.500595	31.432740	4.777555	48.894315	0.466945	0.481668	0.603914	0.621103	0.333333	0.191185	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	sp|Q07955-3|SRSF1_HUMAN	SRSF1_HUMAN	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	100.000000	0.017100	22442.200000	5.000000	9.000000	13.000000	Spectrum19942 scans:14190,	EAGDVCYADVYR	E[+28]AGDVC[+57]YADVYR	R	D	99.700000	84.500000	43.700000	69.600000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1450.650000	2.000000	-0.001500	-1.100000	143.000000	154.000000	0.375600	0.198533	0.514400	NaN	NaN	1.209400	13.580557	228.933486	65.593843	0.472037	0.288036	0.894453	NaN	NaN	1.807908	9.083073	97.500595	31.432740	4.777555	48.894315	0.466945	0.481668	0.603689	0.620872	0.332854	0.191027	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	sp|Q07955-3|SRSF1_HUMAN	SRSF1_HUMAN	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	100.000000	0.017100	22442.200000	5.000000	9.000000	13.000000	Spectrum19932 scans:14149,	EAGDVCYADVYR	E[+28]AGDVC[+57]YADVYR	R	D	99.700000	85.200000	42.000000	67.000000	Dimethyl (+28), Carbamidomethyl (+57)	1444.630000	2.000000	-0.001700	-1.200000	143.000000	154.000000	0.375600	0.198533	0.514400	NaN	NaN	1.209400	13.580557	228.933486	65.593843	0.472037	0.288036	0.894453	NaN	NaN	1.807908	9.083073	97.500595	31.432740	4.777555	48.894315	0.466945	0.481668	0.603464	0.620642	0.295823	0.190869	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1	sp|Q92900-2|RENT1_HUMAN	RENT1_HUMAN	Isoform 2 of Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1	100.000000	0.001320	123019.300000	1.000000	1.000000	1.000000	Spectrum11519 scans:41089,	EAIDSPVSF	E[+28]AIDSPVSF	R	L	99.200000	56.200000	45.900000	23.500000	Dimethyl (+28)	991.490000	2.000000	0.000460	0.460000	550.000000	558.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.002360	38850.300000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.36218.36218.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36218"	EALAEAALESPR	E[+28]ALAEAALESPR	R	P	99.700000	87.900000	53.500000	70.900000	Dimethyl (+28)	1283.670000	2.000000	-0.000490	-0.380000	271.000000	282.000000	0.531333	0.326867	0.618767	1.257050	14.589700	8.376800	NaN	4.317257	NaN	0.667756	0.474224	1.075929	1.462324	19.810849	12.522311	NaN	1.838679	NaN	1.065040	7.374584	0.227296	0.301594	0.293422	0.387747	0.295068	0.012992	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.034200	38850.300000	7.000000	16.000000	26.000000	Spectrum47975 scans:19230,	EALAEAALESPR	E[+28]ALAEAALESPR	R	P	99.700000	66.200000	49.900000	48.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1293.680000	2.000000	-0.001300	-0.980000	271.000000	282.000000	0.531333	0.326867	0.618767	1.257050	14.589700	8.376800	NaN	4.317257	NaN	0.667756	0.474224	1.075929	1.462324	19.810849	12.522311	NaN	1.838679	NaN	1.065040	7.374584	0.227296	0.301594	0.293313	0.387604	0.282458	0.012982	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.034200	38850.300000	7.000000	16.000000	26.000000	Spectrum47953 scans:19204,	EALAEAALESPR	E[+28]ALAEAALESPR	R	P	99.700000	80.000000	50.000000	64.600000	Dimethyl (+28), Label:13C(6) (+6)	1289.690000	2.000000	-0.001900	-1.500000	271.000000	282.000000	0.531333	0.326867	0.618767	1.257050	14.589700	8.376800	NaN	4.317257	NaN	0.667756	0.474224	1.075929	1.462324	19.810849	12.522311	NaN	1.838679	NaN	1.065040	7.374584	0.227296	0.301594	0.293204	0.387460	0.279388	0.012971	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4	DNJB1_HUMAN	DNJB1_HUMAN	DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4	100.000000	0.002310	38027.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.25284.25284.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25284"	EALCGCTVNVPTLDGR	E[+28]ALC[+57]GC[+57]TVNVPTLDGR	R	T	99.700000	82.900000	52.600000	15.900000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1798.860000	2.000000	-0.002000	-1.100000	264.000000	279.000000	NaN	7.107567	NaN	1.439550	NaN	NaN	7.664057	NaN	0.472071	NaN	10.311781	NaN	1.674626	NaN	NaN	5.125945	NaN	0.226218	3.400285	10.311781	0.298978	NaN	0.385527	NaN	0.276384	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2	DNJC7_HUMAN	DNJC7_HUMAN	DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2	99.900000	0.001320	56424.900000	1.000000	1.000000	1.000000	Spectrum16720 scans:6859,	EALGDAQQSVR	E[+28]ALGDAQQSVR	R	L	99.200000	56.400000	48.500000	38.700000	Dimethyl (+28)	1200.610000	2.000000	0.000120	0.099000	80.000000	90.000000	20.538467	1.982300	0.145033	2.795200	0.881400	0.316400	NaN	NaN	NaN	25.811822	2.875955	0.252188	3.251650	1.196823	0.472980	NaN	NaN	NaN	14.531736	2.036389	0.299859	0.248950	0.386519	0.319591	0.264987	0.189929	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.038200	57471.900000	5.000000	15.000000	29.000000	Spectrum9581 scans:34686,	EALLSSAVDHGSDEVKFR	E[+28]ALLSSAVDHGSDEVKFR	R	Q	99.200000	29.700000	53.200000	9.230000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2033.050000	4.000000	-0.000440	-0.220000	139.000000	156.000000	24.987000	10.216300	0.489833	1.740050	4.715750	2.745750	NaN	NaN	NaN	31.402539	14.821985	0.851736	2.024197	6.403354	4.104567	NaN	NaN	NaN	16.713368	10.612669	0.372854	0.137413	0.480432	0.176274	0.259052	0.189773	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.038200	57471.900000	5.000000	15.000000	29.000000	Spectrum51119 scans:22817,	EALLSSAVDHGSDEVKFR	E[+28]ALLSSAVDHGSDEVKFR	R	Q	99.700000	43.300000	53.700000	35.100000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2025.080000	4.000000	0.002400	1.200000	139.000000	156.000000	24.987000	10.216300	0.489833	1.740050	4.715750	2.745750	NaN	NaN	NaN	31.402539	14.821985	0.851736	2.024197	6.403354	4.104567	NaN	NaN	NaN	16.713368	10.612669	0.372854	0.137413	0.479897	0.176144	0.254492	0.189617	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2	GALE_HUMAN	GALE_HUMAN	UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2	100.000000	0.006590	38264.000000	2.000000	4.000000	5.000000	Spectrum56413 scans:28891,	EALNVFGNDYDTEDGTGVR	E[+28]ALNVFGNDYDTEDGTGVR	R	D	99.500000	97.300000	44.800000	88.400000	Dimethyl (+28)	2098.930000	2.000000	-0.011000	-5.400000	221.000000	239.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2	GALE_HUMAN	GALE_HUMAN	UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2	100.000000	0.006590	38264.000000	2.000000	4.000000	5.000000	Spectrum56410 scans:28887,	EALNVFGNDYDTEDGTGVR	E[+28]ALNVFGNDYDTEDGTGVR	R	D	99.700000	97.200000	46.400000	89.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2108.960000	2.000000	0.003500	1.700000	221.000000	239.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=1 SV=2	DLDH_HUMAN	DLDH_HUMAN	Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=1 SV=2	100.000000	0.007900	54159.400000	4.000000	4.000000	6.000000	Spectrum46530 scans:17569,	EANLAASFGK	E[+28]ANLAASFGK	R	S	99.700000	78.400000	49.200000	56.700000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1066.600000	2.000000	0.000690	0.650000	496.000000	505.000000	12.170500	34.113833	2.151167	2.707750	19.510700	7.279200	64.047786	NaN	NaN	15.295337	49.492939	3.740509	3.149920	26.492905	10.881531	42.837030	NaN	NaN	20.427429	37.992922	0.077514	0.000000	0.099583	0.000000	0.016328	0.188998	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	N-alpha-acetyltransferase 15, NatA auxiliary subunit OS=Homo sapiens GN=NAA15 PE=1 SV=1	sp|Q9BXJ9|NAA15_HUMAN	NAA15_HUMAN	N-alpha-acetyltransferase 15, NatA auxiliary subunit OS=Homo sapiens GN=NAA15 PE=1 SV=1	98.500000	0.003950	101259.900000	1.000000	3.000000	3.000000	Spectrum25583 scans:5124,	EAQALDTADR	E[+28]AQALDTADR	D	F	98.600000	46.400000	46.500000	25.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1126.550000	2.000000	-0.000490	-0.440000	433.000000	442.000000	0.399133	0.391067	1.057767	0.622750	0.529600	0.866750	NaN	NaN	0.730429	0.501613	0.567366	1.839274	0.724444	0.719126	1.295687	NaN	NaN	0.350023	0.613028	0.643246	0.114454	0.074753	0.146986	0.095681	0.237753	0.188844	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	N-alpha-acetyltransferase 15, NatA auxiliary subunit OS=Homo sapiens GN=NAA15 PE=1 SV=1	sp|Q9BXJ9|NAA15_HUMAN	NAA15_HUMAN	N-alpha-acetyltransferase 15, NatA auxiliary subunit OS=Homo sapiens GN=NAA15 PE=1 SV=1	98.500000	0.003950	101259.900000	1.000000	3.000000	3.000000	Spectrum25580 scans:5120,	EAQALDTADR	E[+28]AQALDTADR	D	F	98.700000	64.000000	47.600000	21.500000	Dimethyl (+28), Label:13C(6) (+6)	1122.560000	2.000000	0.001700	1.500000	433.000000	442.000000	0.399133	0.391067	1.057767	0.622750	0.529600	0.866750	NaN	NaN	0.730429	0.501613	0.567366	1.839274	0.724444	0.719126	1.295687	NaN	NaN	0.350023	0.613028	0.643246	0.114454	0.074753	0.146931	0.095610	0.236296	0.188690	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	N-alpha-acetyltransferase 15, NatA auxiliary subunit OS=Homo sapiens GN=NAA15 PE=1 SV=1	sp|Q9BXJ9|NAA15_HUMAN	NAA15_HUMAN	N-alpha-acetyltransferase 15, NatA auxiliary subunit OS=Homo sapiens GN=NAA15 PE=1 SV=1	98.500000	0.003950	101259.900000	1.000000	3.000000	3.000000	Spectrum25579 scans:5119,	EAQALDTADR	E[+28]AQALDTADR	D	F	99.600000	76.900000	46.600000	37.900000	Dimethyl (+28)	1116.540000	2.000000	0.001800	1.600000	433.000000	442.000000	0.399133	0.391067	1.057767	0.622750	0.529600	0.866750	NaN	NaN	0.730429	0.501613	0.567366	1.839274	0.724444	0.719126	1.295687	NaN	NaN	0.350023	0.613028	0.643246	0.114454	0.074753	0.146822	0.095575	0.236054	0.188536	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.069800	17285.000000	7.000000	24.000000	53.000000	Spectrum34273 scans:3442,	EAQMAAKLER	E[+28]AQMAAKLER	R	L	98.500000	52.700000	49.800000	31.100000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1235.660000	2.000000	-0.002100	-1.700000	113.000000	122.000000	9.083167	1.597033	NaN	23.765400	66.002100	NaN	NaN	NaN	NaN	11.415316	2.317004	NaN	27.646241	89.621970	NaN	NaN	NaN	NaN	19.530778	45.969487	0.000000	0.355053	0.000000	0.453620	0.235095	0.187618	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.069800	17285.000000	7.000000	24.000000	53.000000	Spectrum38058 scans:7788,	EAQMAAKLER	E[+28]AQMAAKLER	R	L	99.700000	45.300000	50.200000	33.200000	Dimethyl (+28), Oxidation (+16), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1227.690000	3.000000	0.001900	1.500000	113.000000	122.000000	9.083167	1.597033	NaN	23.765400	66.002100	NaN	NaN	NaN	NaN	11.415316	2.317004	NaN	27.646241	89.621970	NaN	NaN	NaN	NaN	19.530778	45.969487	0.000000	0.355053	0.000000	0.453120	0.234856	0.187466	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Early endosome antigen 1 OS=Homo sapiens GN=EEA1 PE=1 SV=2	EEA1_HUMAN	EEA1_HUMAN	Early endosome antigen 1 OS=Homo sapiens GN=EEA1 PE=1 SV=2	100.000000	0.005270	162450.100000	3.000000	4.000000	4.000000	Spectrum9599 scans:34730,	EAQNDLEQVLR	E[+28]AQNDLEQVLR	R	Q	98.900000	53.200000	49.400000	36.300000	Dimethyl (+28)	1341.690000	2.000000	-0.001600	-1.200000	506.000000	516.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	DDB1_HUMAN	DDB1_HUMAN	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	100.000000	0.017300	126952.200000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.47654.47654.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47654"	EATADDLIKVVEELTR	E[+28]ATADDLIKVVEELTR	R	I	99.100000	74.300000	58.000000	54.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1875.030000	3.000000	-0.000690	-0.370000	1123.000000	1138.000000	71.130033	38.173600	0.779467	NaN	NaN	NaN	NaN	NaN	NaN	89.393029	55.382919	1.355358	NaN	NaN	NaN	NaN	NaN	NaN	89.393029	55.382919	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	DDB1_HUMAN	DDB1_HUMAN	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	100.000000	0.017300	126952.200000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.47571.47571.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47571"	EATADDLIKVVEELTR	E[+28]ATADDLIKVVEELTR	R	I	99.700000	80.200000	57.700000	64.700000	Dimethyl (+28), Dimethyl (+28)	1857.010000	2.000000	0.000970	0.520000	1123.000000	1138.000000	71.130033	38.173600	0.779467	NaN	NaN	NaN	NaN	NaN	NaN	89.393029	55.382919	1.355358	NaN	NaN	NaN	NaN	NaN	NaN	89.393029	55.382919	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	DDB1_HUMAN	DDB1_HUMAN	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	100.000000	0.006590	126952.200000	2.000000	4.000000	5.000000	Spectrum73433 scans:51375,	EATADDLIKVVEELTR	E[+28]ATADDLIKVVEELTR	R	I	99.700000	53.600000	53.100000	39.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1867.050000	3.000000	-0.002600	-1.400000	1123.000000	1138.000000	71.130033	38.173600	0.779467	NaN	NaN	NaN	NaN	NaN	NaN	89.393029	55.382919	1.355358	NaN	NaN	NaN	NaN	NaN	NaN	89.393029	55.382919	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369|FLNB_HUMAN	FLNB_HUMAN	Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2	100.000000	0.018400	278140.800000	8.000000	12.000000	14.000000	Spectrum18477 scans:10543,	EATTDFTVDSR	E[+28]ATTDFTVDSR	R	P	99.600000	61.700000	45.300000	50.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1278.590000	2.000000	-0.002000	-1.600000	1246.000000	1256.000000	1.395100	0.401900	0.375633	0.847050	0.361250	0.468700	NaN	NaN	NaN	1.753299	0.583083	0.653162	0.985372	0.490529	0.700650	NaN	NaN	NaN	1.369335	0.536806	0.174040	0.054747	0.222602	0.069740	0.229270	0.184771	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369|FLNB_HUMAN	FLNB_HUMAN	Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2	100.000000	0.018400	278140.800000	8.000000	12.000000	14.000000	Spectrum18479 scans:10549,	EATTDFTVDSR	E[+28]ATTDFTVDSR	R	P	99.700000	64.600000	46.500000	48.400000	Dimethyl (+28), Label:13C(6) (+6)	1274.610000	2.000000	-0.001400	-1.100000	1246.000000	1256.000000	1.395100	0.401900	0.375633	0.847050	0.361250	0.468700	NaN	NaN	NaN	1.753299	0.583083	0.653162	0.985372	0.490529	0.700650	NaN	NaN	NaN	1.369335	0.536806	0.174040	0.054747	0.222520	0.069714	0.228365	0.184624	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369|FLNB_HUMAN	FLNB_HUMAN	Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2	100.000000	0.018400	278140.800000	8.000000	12.000000	14.000000	Spectrum18478 scans:10548,	EATTDFTVDSR	E[+28]ATTDFTVDSR	R	P	99.700000	76.900000	45.100000	57.700000	Dimethyl (+28)	1268.590000	2.000000	-0.001900	-1.500000	1246.000000	1256.000000	1.395100	0.401900	0.375633	0.847050	0.361250	0.468700	NaN	NaN	NaN	1.753299	0.583083	0.653162	0.985372	0.490529	0.700650	NaN	NaN	NaN	1.369335	0.536806	0.174040	0.054747	0.222438	0.069689	0.228139	0.184476	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.032900	28786.800000	10.000000	21.000000	25.000000	Spectrum32865 scans:1788,	EAVAAQGKAKK	E[+28]AVAAQGKAKK	M	-	98.600000	27.600000	46.400000	11.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1235.800000	3.000000	-0.000460	-0.370000	244.000000	254.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.032900	28786.800000	10.000000	21.000000	25.000000	Spectrum32862 scans:1784,	EAVAAQGKAKK	E[+28]AVAAQGKAKK	M	-	99.700000	37.200000	43.100000	27.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1223.840000	3.000000	-0.000430	-0.350000	244.000000	254.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3	PPM1F_HUMAN	PPM1F_HUMAN	Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3	100.000000	0.006590	49812.300000	2.000000	5.000000	5.000000	Spectrum68535 scans:43257,	EAVSQLLQTDLSEFR	E[+28]AVSQLLQTDLSEFR	H	K	99.700000	60.700000	51.900000	45.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1772.920000	3.000000	-0.000790	-0.440000	82.000000	96.000000	0.523300	0.346900	0.663000	0.777850	2.388900	0.867700	NaN	NaN	NaN	0.657660	0.503289	1.152843	0.904871	3.243805	1.297107	NaN	NaN	NaN	0.781266	1.873547	0.099893	0.402007	0.127437	0.510602	0.222009	0.183744	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3	PPM1F_HUMAN	PPM1F_HUMAN	Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3	100.000000	0.006590	49812.300000	2.000000	5.000000	5.000000	Spectrum68506 scans:43223,	EAVSQLLQTDLSEFR	E[+28]AVSQLLQTDLSEFR	H	K	99.700000	73.500000	51.900000	55.200000	Dimethyl (+28)	1762.910000	3.000000	0.001500	0.850000	82.000000	96.000000	0.523300	0.346900	0.663000	0.777850	2.388900	0.867700	NaN	NaN	NaN	0.657660	0.503289	1.152843	0.904871	3.243805	1.297107	NaN	NaN	NaN	0.781266	1.873547	0.099893	0.402007	0.127390	0.510416	0.218652	0.183452	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3	PPM1F_HUMAN	PPM1F_HUMAN	Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3	100.000000	0.004630	49812.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction6A.43226.43226.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43226"	EAVSQLLQTDLSEFR	E[+28]AVSQLLQTDLSEFR	H	K	99.700000	89.000000	56.500000	75.800000	Dimethyl (+28), Label:13C(6) (+6)	1768.930000	2.000000	-0.005000	-2.800000	82.000000	96.000000	0.523300	0.346900	0.663000	0.777850	2.388900	0.867700	NaN	NaN	NaN	0.657660	0.503289	1.152843	0.904871	3.243805	1.297107	NaN	NaN	NaN	0.781266	1.873547	0.099893	0.402007	0.127343	0.510229	0.217623	0.183307	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Translin OS=Homo sapiens GN=TSN PE=1 SV=1	TSN_HUMAN	TSN_HUMAN	Translin OS=Homo sapiens GN=TSN PE=1 SV=1	99.800000	0.004720	26165.400000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.56264.56264.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=56264"	EAVTEILGIEPDR	E[+28]AVTEILGIEPDR	R	E	99.700000	84.100000	55.100000	60.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1478.790000	2.000000	-0.000390	-0.260000	117.000000	129.000000	0.666967	0.364467	0.553133	2.694400	0.545750	0.358500	NaN	NaN	NaN	0.838214	0.528775	0.961804	3.134390	0.741055	0.535914	NaN	NaN	NaN	1.986302	0.634915	0.333645	0.105450	0.425174	0.133789	0.216604	0.183162	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Translin OS=Homo sapiens GN=TSN PE=1 SV=1	TSN_HUMAN	TSN_HUMAN	Translin OS=Homo sapiens GN=TSN PE=1 SV=1	99.900000	0.004670	26165.400000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.54915.54915.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=54915"	EAVTEILGIEPDR	E[+28]AVTEILGIEPDR	R	E	99.700000	84.200000	55.000000	60.800000	Dimethyl (+28)	1468.780000	2.000000	0.003000	2.000000	117.000000	129.000000	0.666967	0.364467	0.553133	2.694400	0.545750	0.358500	NaN	NaN	NaN	0.838214	0.528775	0.961804	3.134390	0.741055	0.535914	NaN	NaN	NaN	1.986302	0.634915	0.333645	0.105450	0.425017	0.133740	0.213999	0.183017	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1	SYQ_HUMAN	SYQ_HUMAN	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1	100.000000	0.005760	87781.900000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.50493.50493.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=50493"	ECGVGVIVTPEQIEEAVEAAINR	E[+28]C[+57]GVGVIVTPEQIEEAVEAAINR	R	H	99.500000	82.300000	58.700000	75.200000	Dimethyl (+28), Carbamidomethyl (+57)	2510.270000	3.000000	-0.001400	-0.540000	110.000000	132.000000	0.679400	0.202800	0.298500	NaN	NaN	NaN	NaN	NaN	NaN	0.853839	0.294226	0.519040	NaN	NaN	NaN	NaN	NaN	NaN	0.853839	0.294226	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 3 of NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C	sp|Q9UNZ2|NSF1C_HUMAN	NSF1C_HUMAN	NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2	100.000000	0.007080	40555.200000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.8043.8043.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8043"	EDEEEEEGQR	E[+28]DEEEEEGQR	D	F	99.200000	49.900000	38.200000	39.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1286.510000	2.000000	-0.008500	-6.600000	84.000000	93.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 3 of NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C	sp|Q9UNZ2|NSF1C_HUMAN	NSF1C_HUMAN	NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2	100.000000	0.002330	40555.200000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.7740.7740.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7740"	EDEEEEEGQR	E[+28]DEEEEEGQR	D	F	99.700000	50.800000	38.700000	49.600000	Dimethyl (+28)	1276.500000	2.000000	-0.000890	-0.700000	84.000000	93.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	TERA_HUMAN	TERA_HUMAN	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	100.000000	0.009330	89306.800000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.43265.43265.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43265"	EDEEESLNEVGYDDIGGCR	E[+28]DEEESLNEVGYDDIGGC[+57]R	R	K	99.700000	75.700000	41.700000	75.700000	Dimethyl (+28), Carbamidomethyl (+57)	2212.910000	2.000000	-0.001500	-0.670000	192.000000	210.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	GUAA_HUMAN	GUAA_HUMAN	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	100.000000	0.013200	76698.700000	5.000000	10.000000	10.000000	Spectrum65900 scans:40177,	EDGVFNISVDNTCSLFR	E[+28]DGVFNISVDNTC[+57]SLFR	R	G	99.000000	64.100000	49.300000	45.600000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	2005.950000	2.000000	0.002800	1.400000	125.000000	141.000000	1.945900	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.445520	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.445520	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	GUAA_HUMAN	GUAA_HUMAN	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	100.000000	0.013200	76698.700000	5.000000	10.000000	10.000000	Spectrum65892 scans:40168,	EDGVFNISVDNTCSLFR	E[+28]DGVFNISVDNTC[+57]SLFR	R	G	99.100000	65.200000	48.400000	51.800000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2009.940000	2.000000	0.002400	1.200000	125.000000	141.000000	1.945900	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.445520	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.445520	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	GUAA_HUMAN	GUAA_HUMAN	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	100.000000	0.011600	76698.700000	3.000000	5.000000	5.000000	Nsco_Tails_biological_replicate_3_fraction6A.40172.40172.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40172"	EDGVFNISVDNTCSLFR	E[+28]DGVFNISVDNTC[+57]SLFR	R	G	99.000000	55.600000	51.600000	53.300000	Dimethyl (+28), Carbamidomethyl (+57)	1999.930000	2.000000	-0.005700	-2.900000	125.000000	141.000000	1.945900	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.445520	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.445520	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HSPA4L PE=1 SV=3	HS74L_HUMAN	HS74L_HUMAN	Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HSPA4L PE=1 SV=3	100.000000	0.005760	94496.500000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.23110.23110.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23110"	EDISSIEIVGGATR	E[+28]DISSIEIVGGATR	R	I	99.700000	71.800000	54.500000	59.400000	Dimethyl (+28)	1473.770000	2.000000	-0.002200	-1.500000	333.000000	346.000000	0.412900	0.241700	0.614133	1.125200	NaN	NaN	NaN	NaN	NaN	0.518914	0.350663	1.067872	1.308943	NaN	NaN	NaN	NaN	NaN	0.913929	0.350663	0.259720	NaN	0.329516	NaN	0.209351	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Interleukin enhancer-binding factor 3 OS=Homo sapiens GN=ILF3	sp|Q12906-2|ILF3_HUMAN	ILF3_HUMAN	Isoform 2 of Interleukin enhancer-binding factor 3 OS=Homo sapiens GN=ILF3	100.000000	0.003950	76015.400000	2.000000	3.000000	3.000000	Spectrum15081 scans:4064,	EDITQSAQH	E[+28]DITQSAQH	R	A	99.000000	49.200000	44.100000	36.000000	Dimethyl (+28)	1055.490000	2.000000	0.000038	0.036000	312.000000	320.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Interleukin enhancer-binding factor 3 OS=Homo sapiens GN=ILF3	sp|Q12906|ILF3_HUMAN	ILF3_HUMAN	Interleukin enhancer-binding factor 3 OS=Homo sapiens GN=ILF3 PE=1 SV=3	100.000000	0.003950	95320.900000	2.000000	3.000000	3.000000	Spectrum5852 scans:24780,	EDITQSAQHALR	E[+28]DITQSAQHALR	R	L	99.300000	34.500000	49.700000	26.200000	Dimethyl (+28)	1395.710000	3.000000	0.000360	0.260000	312.000000	323.000000	0.294833	2.704900	15.542267	NaN	2.714350	22.828650	NaN	NaN	NaN	0.370533	3.924316	27.025329	NaN	3.685722	34.126093	NaN	NaN	NaN	0.370533	3.805019	NaN	0.019953	NaN	0.024986	1.000000	0.180447	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Interleukin enhancer-binding factor 3 OS=Homo sapiens GN=ILF3	sp|Q12906|ILF3_HUMAN	ILF3_HUMAN	Interleukin enhancer-binding factor 3 OS=Homo sapiens GN=ILF3 PE=1 SV=3	100.000000	0.003950	95320.900000	2.000000	3.000000	3.000000	Spectrum5854 scans:24784,	EDITQSAQHALR	E[+28]DITQSAQHALR	R	L	99.700000	58.300000	50.200000	43.400000	Dimethyl (+28), Label:13C(6) (+6)	1401.730000	3.000000	0.000840	0.600000	312.000000	323.000000	0.294833	2.704900	15.542267	NaN	2.714350	22.828650	NaN	NaN	NaN	0.370533	3.924316	27.025329	NaN	3.685722	34.126093	NaN	NaN	NaN	0.370533	3.805019	NaN	0.019953	NaN	0.024977	1.000000	0.180307	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of Hematological and neurological expressed 1 protein OS=Homo sapiens GN=HN1	sp|Q9UK76-2|HN1_HUMAN	HN1_HUMAN	Isoform 2 of Hematological and neurological expressed 1 protein OS=Homo sapiens GN=HN1	100.000000	0.002330	19898.400000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.22731.22731.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22731"	EDLESSGLQR	E[+28]DLESSGLQR	R	R	99.000000	50.700000	50.300000	31.600000	Dimethyl (+28)	1160.570000	2.000000	-0.002000	-1.700000	75.000000	84.000000	0.586467	0.204200	0.348267	3.748750	3.665950	0.806150	NaN	NaN	7.544871	0.737045	0.296257	0.605576	4.360913	4.977867	1.205098	NaN	NaN	3.615522	2.548979	2.637062	0.393411	0.462156	0.498225	0.578320	0.198569	0.179328	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	THIC_HUMAN	THIC_HUMAN	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	100.000000	0.027700	41332.400000	4.000000	8.000000	21.000000	Spectrum39687 scans:9695,	EDQDKVAVLSQNR	E[+28]DQDKVAVLSQNR	R	T	99.600000	45.000000	51.800000	32.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1566.860000	3.000000	0.002700	1.700000	176.000000	188.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Presequence protease, mitochondrial OS=Homo sapiens GN=PITRM1	sp|Q5JRX3-2|PREP_HUMAN	PREP_HUMAN	Isoform 2 of Presequence protease, mitochondrial OS=Homo sapiens GN=PITRM1	100.000000	0.002630	117538.500000	2.000000	2.000000	2.000000	Spectrum58817 scans:31832,	EDTNNLFSVQFR	E[+28]DTNNLFSVQFR	R	T	98.900000	51.200000	49.200000	34.600000	Dimethyl (+28), Label:13C(6) (+6)	1502.750000	2.000000	-0.000890	-0.590000	82.000000	93.000000	0.609967	1.944267	4.131333	1.062500	0.265300	0.248900	NaN	NaN	NaN	0.766579	2.820776	7.183678	1.236004	0.360242	0.372076	NaN	NaN	NaN	1.001291	1.590509	0.146583	0.419135	0.185501	0.524107	0.196879	0.178912	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A	sp|P78559|MAP1A_HUMAN	MAP1A_HUMAN	Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A PE=1 SV=6	100.000000	0.015800	305468.400000	8.000000	11.000000	12.000000	Spectrum10796 scans:38727,	EDVALEQDTYWR	E[+28]DVALEQDTYWR	R	E	99.000000	52.500000	46.100000	40.400000	Dimethyl (+28)	1551.720000	2.000000	-0.002700	-1.700000	1687.000000	1698.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	XRCC5_HUMAN	XRCC5_HUMAN	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	100.000000	0.026300	82689.100000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction2A.9272.9272.3 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9272"	EEAIKFSEEQR	E[+28]EAIKFSEEQR	R	F	98.700000	60.200000	53.400000	46.700000	Dimethyl (+28), Dimethyl (+28)	1420.720000	3.000000	0.000420	0.300000	644.000000	654.000000	1.992833	NaN	2.977033	3.483800	0.153650	164.734950	NaN	NaN	NaN	2.504503	NaN	5.176549	4.052697	0.208636	246.258988	NaN	NaN	NaN	3.278600	0.208636	0.147607	NaN	0.186660	NaN	0.189152	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	XRCC5_HUMAN	XRCC5_HUMAN	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	100.000000	0.009220	82689.100000	3.000000	4.000000	7.000000	Spectrum17911 scans:9257,	EEAIKFSEEQR	E[+28]EAIKFSEEQR	R	F	99.700000	59.500000	50.800000	41.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1430.770000	3.000000	-0.000085	-0.059000	644.000000	654.000000	1.992833	NaN	2.977033	3.483800	0.153650	164.734950	NaN	NaN	NaN	2.504503	NaN	5.176549	4.052697	0.208636	246.258988	NaN	NaN	NaN	3.278600	0.208636	0.147607	NaN	0.186592	NaN	0.187314	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	sp|Q01081|U2AF1_HUMAN	U2AF1_HUMAN	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	100.000000	0.006590	27854.200000	2.000000	4.000000	5.000000	Spectrum29440 scans:13786,	EEDAEKAVIDLNNR	E[+28]EDAEKAVIDLNNR	R	W	99.400000	37.300000	51.400000	26.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1688.870000	3.000000	-0.000530	-0.320000	120.000000	133.000000	5.072933	3.534467	0.712633	0.043350	NaN	0.104600	NaN	NaN	NaN	6.375435	5.127865	1.239147	0.050429	NaN	0.156364	NaN	NaN	NaN	3.212932	5.127865	0.494965	NaN	0.625465	NaN	0.187163	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	HCG2044799 OS=Homo sapiens GN=hCG_2044799 PE=4 SV=1	HNRL2_HUMAN	HNRL2_HUMAN	Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Homo sapiens GN=HNRNPUL2 PE=1 SV=1	99.900000	0.001320	85087.200000	1.000000	1.000000	1.000000	Spectrum133 scans:7809,	EEDEPEER	E[+28]EDEPEER	R	S	99.000000	64.400000	37.700000	48.100000	Dimethyl (+28)	1059.430000	2.000000	-0.000980	-0.930000	153.000000	160.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.014400	92453.700000	3.000000	3.000000	5.000000	Nsco_Tails_biological_replicate1_apoptosis.25845.25845.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25845"	EEEAIQLDGLNASQIR	EEEAIQLDGLNASQIR	R	E	99.700000	114.000000	55.800000	92.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1822.930000	2.000000	-0.004800	-2.600000	52.000000	67.000000	NaN	NaN	NaN	NaN	1.815950	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.465816	NaN	NaN	NaN	NaN	NaN	2.465816	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.009440	92453.700000	2.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.48906.48906.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=48906"	EEEAIQLDGLNASQIR	EEEAIQLDGLNASQIR	R	E	99.700000	85.300000	55.700000	76.700000	Dimethyl (+28)	1812.920000	3.000000	-0.002100	-1.200000	52.000000	67.000000	NaN	NaN	NaN	NaN	1.815950	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.465816	NaN	NaN	NaN	NaN	NaN	2.465816	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.021100	92453.700000	5.000000	9.000000	16.000000	Spectrum11100 scans:39695,	EEEAIQLDGLNASQIR	EEEAIQLDGLNASQIR	R	E	99.700000	78.300000	52.100000	35.300000	Dimethyl (+28), Label:13C(6) (+6)	1818.940000	2.000000	-0.002700	-1.500000	52.000000	67.000000	NaN	NaN	NaN	NaN	1.815950	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.465816	NaN	NaN	NaN	NaN	NaN	2.465816	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Pre-mRNA-splicing factor SYF1 OS=Homo sapiens GN=XAB2 PE=1 SV=2	SYF1_HUMAN	SYF1_HUMAN	Pre-mRNA-splicing factor SYF1 OS=Homo sapiens GN=XAB2 PE=1 SV=2	100.000000	0.002630	99994.100000	1.000000	2.000000	2.000000	Spectrum8695 scans:32197,	EEEDDVDLELR	E[+28]EEDDVDLELR	R	L	99.700000	75.000000	44.700000	31.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1398.640000	2.000000	-0.003300	-2.300000	320.000000	330.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3	EF1B_HUMAN	EF1B_HUMAN	Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3	100.000000	0.002630	24746.200000	2.000000	2.000000	2.000000	Spectrum13691 scans:1807,	EEESEEAKR	E[+28]EESEEAKR	D	L	99.700000	49.400000	46.900000	26.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1179.570000	3.000000	0.000440	0.370000	109.000000	117.000000	NaN	NaN	0.679500	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.181534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3	TYSY_HUMAN	TYSY_HUMAN	Thymidylate synthase OS=Homo sapiens GN=TYMS PE=1 SV=3	100.000000	0.006940	35699.300000	2.000000	2.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction6A.35654.35654.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35654"	EEGDLGPVYGFQWR	E[+28]EGDLGPVYGFQWR	R	H	99.200000	56.500000	51.300000	45.000000	Dimethyl (+28)	1679.790000	2.000000	-0.004800	-2.800000	127.000000	140.000000	0.654000	0.319800	0.482467	0.424150	0.351050	NaN	NaN	NaN	NaN	0.821918	0.463971	0.838927	0.493413	0.476679	NaN	NaN	NaN	NaN	0.657665	0.470325	0.155809	0.008600	0.194972	0.010574	0.184183	0.176996	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine phosphatase OS=Homo sapiens GN=PSPH PE=1 SV=2	SERB_HUMAN	SERB_HUMAN	Phosphoserine phosphatase OS=Homo sapiens GN=PSPH PE=1 SV=2	100.000000	0.003950	24990.100000	2.000000	3.000000	3.000000	Spectrum68641 scans:43377,	EEGIDELAKICGVEDAVSEMTR	E[+28]EGIDELAKIC[+57]GVEDAVSEMTR	R	R	99.700000	64.700000	51.100000	59.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2524.210000	3.000000	-0.009800	-3.900000	28.000000	49.000000	NaN	NaN	0.005600	NaN	16.687350	0.283100	NaN	NaN	NaN	NaN	NaN	0.009737	NaN	22.659176	0.423201	NaN	NaN	NaN	NaN	22.659176	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tyrosine-protein kinase ZAP-70 OS=Homo sapiens GN=ZAP70 PE=1 SV=1	sp|P43403|ZAP70_HUMAN	ZAP70_HUMAN	Tyrosine-protein kinase ZAP-70 OS=Homo sapiens GN=ZAP70 PE=1 SV=1	100.000000	0.003950	69856.300000	3.000000	3.000000	3.000000	Spectrum61548 scans:35210,	EEIPVSNVAELLH	E[+28]EIPVSNVAELLH	R	Q	99.700000	67.600000	50.900000	47.500000	Dimethyl (+28)	1476.780000	2.000000	-0.001000	-0.680000	431.000000	443.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens GN=IQGAP1 PE=1 SV=1	IQGA1_HUMAN	IQGA1_HUMAN	Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens GN=IQGAP1 PE=1 SV=1	100.000000	0.009220	189240.600000	2.000000	3.000000	7.000000	Spectrum10880 scans:39011,	EEIQSSISGVTAAY	E[+28]EIQSSISGVTAAY	R	N	98.500000	53.500000	48.500000	43.300000	Dimethyl (+28)	1481.720000	2.000000	-0.003200	-2.200000	723.000000	736.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	BAG family molecular chaperone regulator 2 OS=Homo sapiens GN=BAG2 PE=1 SV=1	BAG2_HUMAN	BAG2_HUMAN	BAG family molecular chaperone regulator 2 OS=Homo sapiens GN=BAG2 PE=1 SV=1	100.000000	0.026300	23754.500000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction2A.10656.10656.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10656"	EELNLTANR	E[+28]ELNLTANR	R	L	99.000000	58.100000	52.000000	28.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1096.570000	2.000000	-0.001200	-1.100000	78.000000	86.000000	0.488633	0.591300	1.248433	1.541400	1.800950	1.531450	NaN	NaN	2.140229	0.614092	0.857868	2.170811	1.793107	2.445448	2.289334	NaN	NaN	1.025603	1.203600	1.651658	0.289945	0.285211	0.361519	0.348972	0.183307	0.174328	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1	PRS8_HUMAN	PRS8_HUMAN	26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1	100.000000	0.005760	45609.100000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.32369.32369.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32369"	EELQLLQEQGSYVGEVVR	E[+28]ELQLLQEQGSYVGEVVR	R	A	99.700000	130.000000	57.700000	106.000000	Dimethyl (+28)	2103.080000	2.000000	0.000010	0.005000	61.000000	78.000000	1.843100	0.186133	0.210000	0.650700	3.724500	5.344800	NaN	NaN	NaN	2.316325	0.270045	0.365154	0.756958	5.057370	7.989835	NaN	NaN	NaN	1.536642	2.663708	0.298922	0.466039	0.372579	0.570023	0.173935	0.174197	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	PYR1_HUMAN	PYR1_HUMAN	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	100.000000	0.119000	242964.500000	4.000000	8.000000	9.000000	Nsco_Tails_biological_replicate_3_fraction2A.23877.23877.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23877"	EELSALVAPAFAH	E[+28]ELSALVAPAFAH	R	T	99.700000	95.800000	54.200000	79.700000	Dimethyl (+28)	1381.720000	2.000000	-0.000410	-0.290000	572.000000	584.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Homo sapiens GN=PPP2R5D PE=4 SV=1	sp|Q14738|2A5D_HUMAN	2A5D_HUMAN	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Homo sapiens GN=PPP2R5D PE=1 SV=1	99.900000	0.001320	69976.400000	1.000000	1.000000	1.000000	Spectrum63238 scans:37215,	EEMWQKIEELAR	E[+28]EMWQKIEELAR	R	L	99.000000	34.200000	51.300000	25.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1634.850000	3.000000	0.000490	0.300000	503.000000	514.000000	0.522200	0.554367	3.308367	10.359800	4.497850	0.243200	NaN	NaN	NaN	0.656277	0.804285	5.752681	12.051534	6.107475	0.363555	NaN	NaN	NaN	6.353906	3.455880	0.458280	0.416644	0.570384	0.508531	0.173283	0.173935	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transferrin receptor (P90, CD71), isoform CRA_c OS=Homo sapiens GN=TFRC PE=4 SV=1	G3V0E5_HUMAN	G3V0E5_HUMAN	Transferrin receptor (P90, CD71), isoform CRA_c OS=Homo sapiens GN=TFRC PE=4 SV=1	97.200000	0.002630	75948.300000	1.000000	2.000000	2.000000	Spectrum5796 scans:24612,	EEPGEDFPAAR	E[+28]EPGEDFPAAR	R	R	99.200000	62.500000	44.400000	39.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1254.570000	2.000000	-0.003400	-2.700000	29.000000	39.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transferrin receptor (P90, CD71), isoform CRA_c OS=Homo sapiens GN=TFRC PE=4 SV=1	TFR1_HUMAN	TFR1_HUMAN	Transferrin receptor protein 1 OS=Homo sapiens GN=TFRC PE=1 SV=2	97.200000	0.002630	84855.600000	1.000000	2.000000	2.000000	Spectrum5786 scans:24584,	EEPGEDFPAAR	E[+28]EPGEDFPAAR	R	R	98.900000	61.500000	44.000000	39.800000	Dimethyl (+28)	1244.560000	2.000000	-0.003900	-3.100000	110.000000	120.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ERO1-like protein alpha OS=Homo sapiens GN=ERO1L PE=1 SV=2	ERO1A_HUMAN	ERO1A_HUMAN	ERO1-like protein alpha OS=Homo sapiens GN=ERO1L PE=1 SV=2	100.000000	0.009220	54376.700000	1.000000	2.000000	7.000000	Spectrum34994 scans:4259,	EEQPPETAAQR	E[+28]EQPPETAAQR	G	C	99.700000	87.900000	47.900000	52.000000	Dimethyl (+28), Label:13C(6) (+6)	1288.640000	2.000000	-0.000490	-0.380000	24.000000	34.000000	0.429533	0.375467	0.884200	0.848450	1.607650	1.891850	36.747486	2.352314	1.293000	0.539818	0.544734	1.537472	0.987000	2.182972	2.828089	24.577792	1.001828	0.619609	8.701537	1.243178	0.338670	0.125719	0.420761	0.152961	0.011615	0.011762	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	ERO1-like protein alpha OS=Homo sapiens GN=ERO1L PE=1 SV=2	ERO1A_HUMAN	ERO1A_HUMAN	ERO1-like protein alpha OS=Homo sapiens GN=ERO1L PE=1 SV=2	100.000000	0.007510	54376.700000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.3893.3893.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3893"	EEQPPETAAQR	E[+28]EQPPETAAQR	G	C	99.700000	58.800000	50.800000	28.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1292.630000	2.000000	0.001700	1.300000	24.000000	34.000000	0.429533	0.375467	0.884200	0.848450	1.607650	1.891850	36.747486	2.352314	1.293000	0.539818	0.544734	1.537472	0.987000	2.182972	2.828089	24.577792	1.001828	0.619609	8.701537	1.243178	0.338670	0.125719	0.420611	0.152907	0.011446	0.011753	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	ERO1-like protein alpha OS=Homo sapiens GN=ERO1L PE=1 SV=2	ERO1A_HUMAN	ERO1A_HUMAN	ERO1-like protein alpha OS=Homo sapiens GN=ERO1L PE=1 SV=2	99.900000	0.032300	54376.700000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction5A.3810.3810.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3810"	EEQPPETAAQR	E[+28]EQPPETAAQR	G	C	99.700000	81.500000	50.400000	48.400000	Dimethyl (+28)	1282.610000	2.000000	-0.000640	-0.500000	24.000000	34.000000	0.429533	0.375467	0.884200	0.848450	1.607650	1.891850	36.747486	2.352314	1.293000	0.539818	0.544734	1.537472	0.987000	2.182972	2.828089	24.577792	1.001828	0.619609	8.701537	1.243178	0.338670	0.125719	0.420460	0.152693	0.011438	0.011744	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A	sp|P78559|MAP1A_HUMAN	MAP1A_HUMAN	Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A PE=1 SV=6	100.000000	0.015800	305468.400000	8.000000	11.000000	12.000000	Spectrum2180 scans:15252,	EEVVEEGAKEAR	E[+28]EVVEEGAKEAR	R	S	99.500000	36.800000	50.300000	24.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1418.740000	3.000000	0.000340	0.240000	338.000000	349.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transcriptional repressor protein YY1 OS=Homo sapiens GN=YY1 PE=1 SV=2	TYY1_HUMAN	TYY1_HUMAN	Transcriptional repressor protein YY1 OS=Homo sapiens GN=YY1 PE=1 SV=2	98.800000	0.001320	44693.700000	1.000000	1.000000	1.000000	Spectrum4805 scans:22053,	EEVVGGDDSDGLR	E[+28]EVVGGDDSDGLR	R	A	99.700000	80.000000	44.800000	63.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1384.630000	2.000000	-0.003800	-2.700000	110.000000	122.000000	3.039567	5.442267	3.537233	NaN	NaN	12.158950	NaN	NaN	NaN	3.819991	7.895735	6.150640	NaN	NaN	18.176172	NaN	NaN	NaN	3.819991	7.895735	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Poly(ADP-ribose) glycohydrolase ARH3 OS=Homo sapiens GN=ADPRHL2 PE=1 SV=1	ARHL2_HUMAN	ARHL2_HUMAN	Poly(ADP-ribose) glycohydrolase ARH3 OS=Homo sapiens GN=ADPRHL2 PE=1 SV=1	100.000000	0.005760	38929.300000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.46740.46740.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46740"	EEVVSELGNGIAAFESVPTAIY	E[+28]EVVSELGNGIAAFESVPTAIY	R	C	99.700000	69.600000	57.500000	62.000000	Dimethyl (+28)	2322.160000	2.000000	-0.001400	-0.590000	261.000000	282.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	sp|P26368-2|U2AF2_HUMAN	U2AF2_HUMAN	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	100.000000	0.011500	53102.800000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.23302.23302.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23302"	EEYEEIVEDVR	E[+28]EYEEIVEDVR	D	D	99.500000	53.300000	49.400000	46.700000	Dimethyl (+28)	1436.670000	2.000000	-0.001900	-1.300000	389.000000	399.000000	0.666567	0.479567	0.793900	0.858700	0.387200	0.451000	NaN	NaN	NaN	0.837711	0.695764	1.380456	0.998924	0.525765	0.674191	NaN	NaN	NaN	0.918317	0.610765	0.055737	0.088032	0.068633	0.106547	0.166427	0.171105	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	sp|P26368|U2AF2_HUMAN	U2AF2_HUMAN	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4	100.000000	0.038200	53483.100000	5.000000	10.000000	29.000000	Spectrum53159 scans:25175,	EEYEEIVEDVR	E[+28]EYEEIVEDVR	D	D	99.700000	69.800000	47.100000	55.900000	Dimethyl (+28), Label:13C(6) (+6)	1442.680000	2.000000	-0.003100	-2.200000	393.000000	403.000000	0.666567	0.479567	0.793900	0.858700	0.387200	0.451000	NaN	NaN	NaN	0.837711	0.695764	1.380456	0.998924	0.525765	0.674191	NaN	NaN	NaN	0.918317	0.610765	0.055737	0.088032	0.068536	0.106473	0.165830	0.170978	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens GN=RPRD1B PE=1 SV=1	RPR1B_HUMAN	RPR1B_HUMAN	Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens GN=RPRD1B PE=1 SV=1	99.300000	0.002310	36882.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.40040.40040.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40040"	EFESVLVDAFSH	E[+28]FESVLVDAFSH	R	V	99.600000	61.000000	50.800000	48.100000	Dimethyl (+28)	1406.670000	2.000000	-0.000930	-0.660000	80.000000	91.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	HSP74_HUMAN	HSP74_HUMAN	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	100.000000	0.011500	94313.900000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.42176.42176.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42176"	EFSITDVVPYPISLR	E[+28]FSITDVVPYPISLR	R	W	99.700000	93.700000	57.200000	76.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1772.960000	2.000000	0.002100	1.200000	391.000000	405.000000	0.500800	0.385200	0.472167	18.296750	0.047100	0.081600	NaN	NaN	NaN	0.629383	0.558855	0.821017	21.284572	0.063955	0.121982	NaN	NaN	NaN	10.956977	0.311405	0.459985	0.427461	0.564608	0.514495	0.163026	0.170726	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	HSP74_HUMAN	HSP74_HUMAN	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	100.000000	0.011500	94313.900000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.42150.42150.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42150"	EFSITDVVPYPISLR	E[+28]FSITDVVPYPISLR	R	W	99.700000	101.000000	57.100000	89.400000	Dimethyl (+28)	1762.950000	2.000000	-0.000550	-0.310000	391.000000	405.000000	0.500800	0.385200	0.472167	18.296750	0.047100	0.081600	NaN	NaN	NaN	0.629383	0.558855	0.821017	21.284572	0.063955	0.121982	NaN	NaN	NaN	10.956977	0.311405	0.459985	0.427461	0.563214	0.514316	0.162911	0.170600	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C	sp|Q9UNZ2|NSF1C_HUMAN	NSF1C_HUMAN	NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2	100.000000	0.014500	40555.200000	6.000000	10.000000	11.000000	Spectrum45677 scans:16569,	EFVAVTGAEEDR	E[+28]FVAVTGAEEDR	R	A	99.700000	65.600000	47.400000	44.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1359.650000	2.000000	-0.002000	-1.400000	11.000000	22.000000	0.598867	0.617600	1.745167	0.061400	0.899150	14.539600	NaN	NaN	NaN	0.752629	0.896025	3.034545	0.071426	1.220925	21.734958	NaN	NaN	NaN	0.412028	1.058475	0.439763	0.096949	0.538264	0.116567	0.162796	0.170474	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C	sp|Q9UNZ2|NSF1C_HUMAN	NSF1C_HUMAN	NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2	100.000000	0.014500	40555.200000	6.000000	10.000000	11.000000	Spectrum45787 scans:16696,	EFVAVTGAEEDR	E[+28]FVAVTGAEEDR	R	A	99.700000	77.400000	48.000000	54.300000	Dimethyl (+28), Label:13C(6) (+6)	1355.660000	2.000000	-0.001900	-1.400000	11.000000	22.000000	0.598867	0.617600	1.745167	0.061400	0.899150	14.539600	NaN	NaN	NaN	0.752629	0.896025	3.034545	0.071426	1.220925	21.734958	NaN	NaN	NaN	0.412028	1.058475	0.439763	0.096949	0.538074	0.116527	0.161772	0.170349	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform 3 of NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C	sp|Q9UNZ2|NSF1C_HUMAN	NSF1C_HUMAN	NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2	100.000000	0.011600	40555.200000	2.000000	4.000000	5.000000	Nsco_Tails_biological_replicate_3_fraction6A.16714.16714.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16714"	EFVAVTGAEEDR	E[+28]FVAVTGAEEDR	R	A	99.700000	79.800000	50.600000	56.800000	Dimethyl (+28)	1349.640000	2.000000	-0.001800	-1.300000	11.000000	22.000000	0.598867	0.617600	1.745167	0.061400	0.899150	14.539600	NaN	NaN	NaN	0.752629	0.896025	3.034545	0.071426	1.220925	21.734958	NaN	NaN	NaN	0.412028	1.058475	0.439763	0.096949	0.537885	0.116165	0.159430	0.170223	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	RS28_HUMAN	RS28_HUMAN	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	100.000000	0.132000	7822.900000	3.000000	8.000000	10.000000	Nsco_Tails_biological_replicate_3_fraction2A.24756.24756.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24756"	EGDVLTLLESER	EGDVLTLLESER	R	E	99.700000	79.900000	54.000000	63.200000	Dimethyl (+28)	1387.720000	2.000000	-0.000460	-0.330000	52.000000	63.000000	1.153867	0.408367	0.541667	3.963300	1.293950	0.719650	NaN	NaN	NaN	1.450128	0.592465	0.941865	4.610499	1.757010	1.075790	NaN	NaN	NaN	3.030313	1.174738	0.306002	0.292954	0.374147	0.350414	0.158992	0.170098	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	RS28_HUMAN	RS28_HUMAN	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	100.000000	0.031600	7822.900000	4.000000	14.000000	24.000000	Spectrum12867 scans:48170,	EGDVLTLLESER	EGDVLTLLESER	R	E	99.500000	66.600000	50.500000	46.700000	Dimethyl (+28), Label:13C(6) (+6)	1393.740000	2.000000	-0.003000	-2.200000	52.000000	63.000000	1.153867	0.408367	0.541667	3.963300	1.293950	0.719650	NaN	NaN	NaN	1.450128	0.592465	0.941865	4.610499	1.757010	1.075790	NaN	NaN	NaN	3.030313	1.174738	0.306002	0.292954	0.373489	0.350172	0.158883	0.169599	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	RS28_HUMAN	RS28_HUMAN	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	100.000000	0.004670	7822.900000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.61459.61459.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=61459"	EGDVLTLLESER	EGDVLTLLESER	R	E	99.700000	99.600000	54.100000	70.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1397.730000	2.000000	-0.001300	-0.920000	52.000000	63.000000	1.153867	0.408367	0.541667	3.963300	1.293950	0.719650	NaN	NaN	NaN	1.450128	0.592465	0.941865	4.610499	1.757010	1.075790	NaN	NaN	NaN	3.030313	1.174738	0.306002	0.292954	0.373357	0.350052	0.158556	0.169475	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.042100	52861.700000	8.000000	16.000000	32.000000	Spectrum61754 scans:35476,	EGGSIPVTLTFQEATGKNVM	E[+28]GGSIPVTLTFQEATGKNVM	R	L	98.500000	76.400000	54.000000	61.200000	Dimethyl (+28), Dimethyl:2H(4) (+32)	2138.130000	2.000000	0.005400	2.500000	414.000000	433.000000	0.678400	1.643833	1.527033	3.726750	0.283200	NaN	NaN	NaN	NaN	0.852583	2.384902	2.655248	4.335321	0.384547	NaN	NaN	NaN	NaN	2.593952	1.384725	0.376380	0.398226	0.459065	0.475678	0.158447	0.169351	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.042100	52861.700000	8.000000	16.000000	32.000000	Spectrum61782 scans:35511,	EGGSIPVTLTFQEATGKNVM	E[+28]GGSIPVTLTFQEATGKNVM	R	L	99.300000	62.900000	53.700000	53.400000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	2142.110000	2.000000	0.000180	0.084000	414.000000	433.000000	0.678400	1.643833	1.527033	3.726750	0.283200	NaN	NaN	NaN	NaN	0.852583	2.384902	2.655248	4.335321	0.384547	NaN	NaN	NaN	NaN	2.593952	1.384725	0.376380	0.398226	0.458259	0.475514	0.158339	0.169227	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2	PDIA4_HUMAN	PDIA4_HUMAN	Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2	100.000000	0.008640	72916.000000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.2373.2373.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2373"	EGPDEDSSNR	E[+28]GPDEDSSNR	A	E	99.700000	90.800000	40.900000	78.500000	Dimethyl (+28)	1132.460000	2.000000	-0.000860	-0.750000	25.000000	34.000000	4.626133	52.115367	6.647733	0.785400	0.703400	0.898000	NaN	NaN	NaN	5.813916	75.609875	11.559265	0.913654	0.955123	1.342402	NaN	NaN	NaN	3.363785	38.282499	0.400767	0.439379	0.487780	0.524474	0.158231	0.169103	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2	PDIA4_HUMAN	PDIA4_HUMAN	Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2	100.000000	0.018400	72916.000000	3.000000	7.000000	14.000000	Spectrum33252 scans:2302,	EGPDEDSSNR	E[+28]GPDEDSSNR	A	E	99.700000	78.300000	37.900000	60.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1142.470000	2.000000	-0.000970	-0.850000	25.000000	34.000000	4.626133	52.115367	6.647733	0.785400	0.703400	0.898000	NaN	NaN	NaN	5.813916	75.609875	11.559265	0.913654	0.955123	1.342402	NaN	NaN	NaN	3.363785	38.282499	0.400767	0.439379	0.487609	0.523753	0.157691	0.168980	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2	PDIA4_HUMAN	PDIA4_HUMAN	Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2	100.000000	0.018400	72916.000000	3.000000	7.000000	14.000000	Spectrum23747 scans:2179,	EGPDEDSSNR	E[+28]GPDEDSSNR	A	E	99.700000	85.100000	39.800000	63.500000	Dimethyl (+28), Label:13C(6) (+6)	1138.480000	2.000000	-0.001600	-1.400000	25.000000	34.000000	4.626133	52.115367	6.647733	0.785400	0.703400	0.898000	NaN	NaN	NaN	5.813916	75.609875	11.559265	0.913654	0.955123	1.342402	NaN	NaN	NaN	3.363785	38.282499	0.400767	0.439379	0.487438	0.523034	0.157584	0.168856	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2	sp|O75643|U520_HUMAN	U520_HUMAN	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2	100.000000	0.005270	244495.800000	2.000000	4.000000	4.000000	Spectrum16558 scans:6586,	EGSASTEVLR	E[+28]GSASTEVLR	R	T	98.600000	48.000000	47.900000	32.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1085.560000	2.000000	-0.000430	-0.400000	754.000000	763.000000	1.264567	0.452800	0.635067	5.516700	8.830250	0.868600	NaN	NaN	NaN	1.589251	0.656930	1.104272	6.417566	11.990291	1.298453	NaN	NaN	NaN	4.003408	6.323611	0.345456	0.458239	0.419577	0.545298	0.157477	0.168610	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2	sp|O75643|U520_HUMAN	U520_HUMAN	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2	100.000000	0.005270	244495.800000	2.000000	4.000000	4.000000	Spectrum16563 scans:6599,	EGSASTEVLR	E[+28]GSASTEVLR	R	T	99.000000	51.500000	48.400000	33.700000	Dimethyl (+28), Label:13C(6) (+6)	1081.570000	2.000000	-0.000690	-0.640000	754.000000	763.000000	1.264567	0.452800	0.635067	5.516700	8.830250	0.868600	NaN	NaN	NaN	1.589251	0.656930	1.104272	6.417566	11.990291	1.298453	NaN	NaN	NaN	4.003408	6.323611	0.345456	0.458239	0.418991	0.543806	0.155885	0.168487	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	FKBP4_HUMAN	FKBP4_HUMAN	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	100.000000	0.004720	51787.900000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.23260.23260.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23260"	EGTGTEMPMIGDR	E[+28]GTGTEMPMIGDR	R	V	99.700000	60.300000	45.700000	10.400000	Dimethyl (+28), Oxidation (+16)	1436.630000	2.000000	-0.002400	-1.700000	40.000000	52.000000	1.620867	24.649933	7.752700	NaN	NaN	NaN	NaN	NaN	NaN	2.037032	35.762550	13.480612	NaN	NaN	NaN	NaN	NaN	NaN	2.037032	35.762550	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Translationally-controlled tumor protein OS=Homo sapiens GN=TPT1 PE=1 SV=1	TCTP_HUMAN	TCTP_HUMAN	Translationally-controlled tumor protein OS=Homo sapiens GN=TPT1 PE=1 SV=1	100.000000	0.008640	19578.200000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.24702.24702.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24702"	EIADGLCLEVEGK	E[+28]IADGLC[+57]LEVEGK	R	M	99.700000	78.600000	53.700000	70.400000	Dimethyl (+28), Carbamidomethyl (+57), Dimethyl (+28)	1487.750000	2.000000	-0.003100	-2.100000	22.000000	34.000000	0.852600	0.394567	0.504367	0.515100	2.998300	6.089500	NaN	NaN	NaN	1.071509	0.572444	0.877007	0.599215	4.071288	9.103072	NaN	NaN	NaN	0.835362	2.321866	0.175389	0.411071	0.212574	0.487330	0.154738	0.168242	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Translationally-controlled tumor protein OS=Homo sapiens GN=TPT1 PE=1 SV=1	tr|Q5W0H4|Q5W0H4_HUMAN	Q5W0H4_HUMAN	Translationally-controlled tumor protein OS=Homo sapiens GN=TPT1 PE=1 SV=1	100.000000	0.008640	0.000000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.24721.24721.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24721"	EIADGLCLEVEGK	E[+28]IADGLC[+57]LEVEGK	R	M	98.800000	53.300000	54.200000	45.200000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36)	1495.770000	2.000000	-0.003200	-2.100000	0.000000	0.000000	0.852600	0.394567	0.504367	0.515100	2.998300	6.089500	NaN	NaN	NaN	1.071509	0.572444	0.877007	0.599215	4.071288	9.103072	NaN	NaN	NaN	0.835362	2.321866	0.175389	0.411071	0.212351	0.487164	0.154635	0.168120	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2	H31_HUMAN	H31_HUMAN	Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2	100.000000	0.010500	15386.700000	3.000000	6.000000	8.000000	Spectrum19795 scans:13693,	EIAQDFKTDLR	E[+28]IAQDFKTDLR	R	F	99.700000	51.800000	51.000000	23.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1408.770000	3.000000	-0.000390	-0.280000	74.000000	84.000000	10.509733	31.074500	1.503333	0.642700	27.544750	12.632800	53.874857	NaN	NaN	13.208161	45.083422	2.614038	0.747652	37.402064	18.884521	36.033078	NaN	NaN	16.662964	41.242743	0.154162	0.000000	0.186586	0.000000	0.010473	0.167876	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2	H31_HUMAN	H31_HUMAN	Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2	100.000000	0.010500	15386.700000	3.000000	6.000000	8.000000	Spectrum19826 scans:13816,	EIAQDFKTDLR	E[+28]IAQDFKTDLR	R	F	99.700000	52.000000	50.900000	23.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1400.790000	3.000000	-0.000160	-0.120000	74.000000	84.000000	10.509733	31.074500	1.503333	0.642700	27.544750	12.632800	53.874857	NaN	NaN	13.208161	45.083422	2.614038	0.747652	37.402064	18.884521	36.033078	NaN	NaN	16.662964	41.242743	0.154162	0.000000	0.186456	0.000000	0.010466	0.167754	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2	H32_HUMAN	H32_HUMAN	Histone H3.2 OS=Homo sapiens GN=HIST2H3A PE=1 SV=3	100.000000	0.010500	15370.700000	3.000000	6.000000	8.000000	Spectrum19797 scans:13698,	EIAQDFKTDLR	NaN	R	F	99.500000	41.400000	50.900000	23.000000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1394.770000	3.000000	-0.001600	-1.200000	74.000000	84.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	SF3B1_HUMAN	SF3B1_HUMAN	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	100.000000	0.013200	145817.300000	5.000000	8.000000	10.000000	Spectrum18814 scans:11337,	EIISNLAK	E[+28]IISNLAK	R	A	99.000000	59.100000	46.700000	34.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	950.590000	2.000000	0.000180	0.190000	595.000000	602.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Eukaryotic translation initiation factor 2-alpha kinase 4 OS=Homo sapiens GN=EIF2AK4	sp|Q9P2K8-2|E2AK4_HUMAN	E2AK4_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 2-alpha kinase 4 OS=Homo sapiens GN=EIF2AK4	94.800000	0.001320	183703.600000	1.000000	1.000000	1.000000	Spectrum37349 scans:6936,	EILAAGGR	NaN	P	Y	98.800000	47.900000	46.800000	12.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	823.480000	2.000000	-0.000390	-0.470000	1316.000000	1323.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	PDC6I_HUMAN	PDC6I_HUMAN	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	100.000000	0.006590	96007.400000	2.000000	5.000000	5.000000	Spectrum45985 scans:16925,	EILDESLR	NaN	R	L	99.000000	51.900000	48.400000	0.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1011.550000	2.000000	-0.000270	-0.270000	449.000000	456.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	PDC6I_HUMAN	PDC6I_HUMAN	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	100.000000	0.006590	96007.400000	2.000000	5.000000	5.000000	Spectrum45986 scans:16926,	EILDESLR	NaN	R	L	99.000000	58.100000	47.900000	0.000000	Dimethyl (+28)	1001.540000	2.000000	0.000360	0.360000	449.000000	456.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1	ZC3HF_HUMAN	ZC3HF_HUMAN	Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1	98.400000	0.004480	48585.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.30750.30750.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30750"	EISLEDLIER	E[+28]ISLEDLIER	D	E	99.600000	62.700000	53.800000	45.000000	Dimethyl (+28)	1243.670000	2.000000	0.001300	1.000000	229.000000	238.000000	0.321767	7.143100	28.359200	0.751450	0.144150	0.192800	NaN	NaN	NaN	0.404382	10.363333	49.311772	0.874160	0.195736	0.288213	NaN	NaN	NaN	0.639271	5.279535	0.224167	0.487541	0.269715	0.570386	0.145860	0.166188	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	XRCC5_HUMAN	XRCC5_HUMAN	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	100.000000	0.026900	82689.100000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.20924.20924.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20924"	EIYSFSESLR	E[+28]IYSFSESLR	D	K	99.700000	71.100000	51.700000	55.000000	Dimethyl (+28)	1257.620000	2.000000	0.000490	0.390000	223.000000	232.000000	0.520067	0.356000	0.685033	0.669750	0.748150	1.120150	NaN	NaN	NaN	0.653596	0.516491	1.191155	0.779119	1.015887	1.674490	NaN	NaN	NaN	0.716358	0.766189	0.055633	0.200562	0.066891	0.234169	0.145768	0.166068	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.069800	17285.000000	7.000000	24.000000	53.000000	Spectrum33420 scans:2492,	EKDKHIEEVR	E[+28]KDKHIEEVR	R	K	99.500000	60.800000	49.800000	35.300000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1379.830000	2.000000	-0.000470	-0.340000	125.000000	134.000000	2.843800	0.284333	0.149000	NaN	NaN	NaN	NaN	NaN	NaN	3.573960	0.412516	0.259085	NaN	NaN	NaN	NaN	NaN	NaN	3.573960	0.412516	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	sp|P16949|STMN1_HUMAN	STMN1_HUMAN	Stathmin OS=Homo sapiens GN=STMN1 PE=1 SV=3	100.000000	0.069800	17285.000000	7.000000	24.000000	53.000000	Spectrum33418 scans:2490,	EKDKHIEEVR	E[+28]KDKHIEEVR	R	K	99.600000	39.300000	50.800000	23.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1391.800000	3.000000	-0.000170	-0.120000	125.000000	134.000000	2.843800	0.284333	0.149000	NaN	NaN	NaN	NaN	NaN	NaN	3.573960	0.412516	0.259085	NaN	NaN	NaN	NaN	NaN	NaN	3.573960	0.412516	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1	EIF3A_HUMAN	EIF3A_HUMAN	Eukaryotic translation initiation factor 3 subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1	100.000000	0.007900	166556.900000	4.000000	6.000000	6.000000	Spectrum14254 scans:2795,	EKEELEQR	NaN	R	E	98.900000	52.000000	49.000000	16.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1133.600000	2.000000	-0.000130	-0.110000	590.000000	597.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.011500	67803.800000	4.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.5903.5903.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=5903"	EKEELMER	NaN	R	L	99.000000	55.200000	51.100000	16.500000	Dimethyl (+28), Dimethyl (+28)	1118.560000	2.000000	-0.002200	-1.900000	343.000000	350.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum36433 scans:5894,	EKEELMER	NaN	R	L	99.000000	32.700000	48.600000	10.400000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1136.590000	3.000000	-0.000035	-0.031000	343.000000	350.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum33975 scans:3112,	EKEELMER	NaN	R	L	99.000000	35.400000	49.000000	9.740000	Dimethyl (+28), Dimethyl:2H(4) (+32), Oxidation (+16), Label:13C(6) (+6)	1144.600000	3.000000	0.000080	0.070000	343.000000	350.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum33985 scans:3123,	EKEELMER	NaN	R	L	99.000000	35.200000	48.000000	9.790000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Oxidation (+16), Label:13C(6)15N(4) (+10)	1152.580000	3.000000	-0.000420	-0.360000	343.000000	350.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum36561 scans:6038,	EKEELMER	NaN	R	L	99.000000	39.700000	49.200000	12.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1128.610000	3.000000	-0.000075	-0.066000	343.000000	350.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Microtubule-associated serine/threonine-protein kinase 2 OS=Homo sapiens GN=MAST2 PE=4 SV=1	sp|Q6P0Q8-2|MAST2_HUMAN	MAST2_HUMAN	Isoform 2 of Microtubule-associated serine/threonine-protein kinase 2 OS=Homo sapiens GN=MAST2	97.900000	0.001320	176116.400000	1.000000	1.000000	1.000000	Spectrum36235 scans:5673,	EKKLATSR	NaN	S	K	98.800000	29.200000	47.400000	0.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Dimethyl:2H(4) (+32)	1041.660000	3.000000	0.000030	0.028000	1229.000000	1236.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	sp|P11413-2|G6PD_HUMAN	G6PD_HUMAN	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	100.000000	0.022400	63810.100000	5.000000	10.000000	17.000000	Spectrum33390 scans:2459,	EKPASTNSDDVR	E[+28]KPASTNSDDVR	M	D	98.600000	30.500000	49.300000	19.400000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1391.700000	3.000000	0.000730	0.520000	320.000000	331.000000	80.704967	31.340333	1.874567	NaN	NaN	NaN	NaN	NaN	NaN	101.426375	45.469098	3.259549	NaN	NaN	NaN	NaN	NaN	NaN	101.426375	45.469098	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	sp|P11413-2|G6PD_HUMAN	G6PD_HUMAN	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	100.000000	0.025400	63810.100000	4.000000	8.000000	11.000000	Nsco_Tails_biological_replicate_3_fraction6A.2470.2470.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2470"	EKPASTNSDDVR	E[+28]KPASTNSDDVR	M	D	99.300000	57.800000	52.100000	45.300000	Dimethyl (+28), Dimethyl (+28)	1373.680000	2.000000	-0.001200	-0.910000	320.000000	331.000000	80.704967	31.340333	1.874567	NaN	NaN	NaN	NaN	NaN	NaN	101.426375	45.469098	3.259549	NaN	NaN	NaN	NaN	NaN	NaN	101.426375	45.469098	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosyl pyrophosphate synthase-associated protein 2 OS=Homo sapiens GN=PRPSAP2 PE=1 SV=1	sp|O60256-2|KPRB_HUMAN	KPRB_HUMAN	Isoform 2 of Phosphoribosyl pyrophosphate synthase-associated protein 2 OS=Homo sapiens GN=PRPSAP2	100.000000	0.003950	0.000000	2.000000	3.000000	3.000000	Spectrum45103 scans:15927,	EKPPITVVGDVGGR	E[+28]KPPITVVGDVGGR	K	I	99.600000	39.400000	51.200000	26.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1496.870000	3.000000	0.000240	0.160000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2	SAE2_HUMAN	SAE2_HUMAN	SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2	100.000000	0.002630	71207.200000	2.000000	2.000000	2.000000	Spectrum26952 scans:7614,	ELAEAVAGGR	E[+28]LAEAVAGGR	R	V	99.500000	59.000000	48.000000	34.800000	Dimethyl (+28)	999.530000	2.000000	-0.000260	-0.260000	10.000000	19.000000	0.567467	0.285800	0.641967	0.817300	1.456100	0.387100	NaN	NaN	NaN	0.713167	0.414644	1.116270	0.950763	1.977188	0.578668	NaN	NaN	NaN	0.831965	1.195916	0.090294	0.368399	0.107449	0.425973	0.134967	0.164066	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum50084 scans:21654,	ELCQGLGQPGSVLR	E[+28]LC[+57]QGLGQPGSVLR	R	V	99.300000	68.000000	51.400000	51.800000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1546.820000	2.000000	-0.003400	-2.200000	360.000000	373.000000	0.941267	0.362000	0.394367	0.352650	0.520550	4.438450	NaN	NaN	NaN	1.182942	0.525196	0.685736	0.410237	0.706837	6.634950	NaN	NaN	NaN	0.796589	0.616016	0.287486	0.093187	0.341169	0.107714	0.134888	0.163602	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum50008 scans:21566,	ELCQGLGQPGSVLR	E[+28]LC[+57]QGLGQPGSVLR	R	V	99.700000	77.700000	51.000000	59.000000	Dimethyl (+28), Carbamidomethyl (+57)	1540.800000	2.000000	-0.002900	-1.900000	360.000000	373.000000	0.941267	0.362000	0.394367	0.352650	0.520550	4.438450	NaN	NaN	NaN	1.182942	0.525196	0.685736	0.410237	0.706837	6.634950	NaN	NaN	NaN	0.796589	0.616016	0.287486	0.093187	0.340936	0.107678	0.134810	0.163486	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum50000 scans:21557,	ELCQGLGQPGSVLR	E[+28]LC[+57]QGLGQPGSVLR	R	V	99.700000	72.300000	51.000000	53.800000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1550.810000	2.000000	-0.000460	-0.290000	360.000000	373.000000	0.941267	0.362000	0.394367	0.352650	0.520550	4.438450	NaN	NaN	NaN	1.182942	0.525196	0.685736	0.410237	0.706837	6.634950	NaN	NaN	NaN	0.796589	0.616016	0.287486	0.093187	0.340819	0.107643	0.134340	0.163371	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.032900	140943.500000	9.000000	17.000000	25.000000	Spectrum13110 scans:48857,	ELDALDANDELTPL	E[+28]LDALDANDELTPL	R	G	99.700000	78.700000	49.000000	64.900000	Dimethyl (+28)	1555.760000	2.000000	-0.000980	-0.630000	838.000000	851.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.032900	140943.500000	9.000000	17.000000	25.000000	Spectrum11986 scans:43108,	ELDALDANDELTPLGR	E[+28]LDALDANDELTPLGR	R	I	99.700000	113.000000	50.800000	94.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1778.890000	2.000000	-0.003900	-2.200000	838.000000	853.000000	0.394333	0.670967	1.765233	NaN	4.185700	141.065100	NaN	NaN	NaN	0.495580	0.973450	3.069437	NaN	5.683617	210.875402	NaN	NaN	NaN	0.495580	3.328534	NaN	0.392012	NaN	0.451022	1.000000	0.161772	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.032900	140943.500000	9.000000	17.000000	25.000000	Spectrum11924 scans:42862,	ELDALDANDELTPLGR	E[+28]LDALDANDELTPLGR	R	I	99.700000	109.000000	50.700000	91.300000	Dimethyl (+28)	1768.880000	2.000000	-0.002900	-1.600000	838.000000	853.000000	0.394333	0.670967	1.765233	NaN	4.185700	141.065100	NaN	NaN	NaN	0.495580	0.973450	3.069437	NaN	5.683617	210.875402	NaN	NaN	NaN	0.495580	3.328534	NaN	0.392012	NaN	0.450872	1.000000	0.161659	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.032900	140943.500000	9.000000	17.000000	25.000000	Spectrum11985 scans:43107,	ELDALDANDELTPLGR	E[+28]LDALDANDELTPLGR	R	I	99.700000	130.000000	51.400000	115.000000	Dimethyl (+28), Label:13C(6) (+6)	1774.900000	2.000000	-0.003200	-1.800000	838.000000	853.000000	0.394333	0.670967	1.765233	NaN	4.185700	141.065100	NaN	NaN	NaN	0.495580	0.973450	3.069437	NaN	5.683617	210.875402	NaN	NaN	NaN	0.495580	3.328534	NaN	0.392012	NaN	0.450723	1.000000	0.161546	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.012500	140943.500000	3.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.32137.32137.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32137"	ELDALDANDELTPLGR	E[+28]LDALDANDELTPLGR	R	I	98.900000	78.200000	55.500000	72.300000	Acetyl (+42), Label:13C(6) (+6)	1788.910000	2.000000	0.021000	12.000000	838.000000	853.000000	0.394333	0.670967	1.765233	NaN	4.185700	141.065100	NaN	NaN	NaN	0.495580	0.973450	3.069437	NaN	5.683617	210.875402	NaN	NaN	NaN	0.495580	3.328534	NaN	0.392012	NaN	0.450574	1.000000	0.161433	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.017900	140943.500000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.27617.27617.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27617"	ELDALDANDELTPLGR	E[+28]LDALDANDELTPLGR	R	I	99.700000	94.200000	55.200000	89.000000	Acetyl (+42)	1782.900000	2.000000	0.035000	20.000000	838.000000	853.000000	0.394333	0.670967	1.765233	NaN	4.185700	141.065100	NaN	NaN	NaN	0.495580	0.973450	3.069437	NaN	5.683617	210.875402	NaN	NaN	NaN	0.495580	3.328534	NaN	0.392012	NaN	0.450424	1.000000	0.161208	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.017300	49956.400000	5.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.47192.47192.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47192"	ELDLSNNCLGDAGILQLVESVR	E[+28]LDLSNNC[+57]LGDAGILQLVESVR	R	Q	99.700000	160.000000	58.800000	157.000000	Dimethyl (+28), Carbamidomethyl (+57)	2442.240000	2.000000	0.000390	0.160000	402.000000	423.000000	0.852400	0.437100	0.512800	NaN	NaN	NaN	NaN	NaN	NaN	1.071258	0.634152	0.891671	NaN	NaN	NaN	NaN	NaN	NaN	1.071258	0.634152	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum73309 scans:50978,	ELDLSNNCLGDAGILQLVESVR	E[+28]LDLSNNC[+57]LGDAGILQLVESVR	R	Q	99.700000	90.900000	54.500000	75.500000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	2448.260000	3.000000	-0.003800	-1.600000	402.000000	423.000000	0.852400	0.437100	0.512800	NaN	NaN	NaN	NaN	NaN	NaN	1.071258	0.634152	0.891671	NaN	NaN	NaN	NaN	NaN	NaN	1.071258	0.634152	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2	PSMD3_HUMAN	PSMD3_HUMAN	26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2	100.000000	0.003950	60961.600000	2.000000	3.000000	3.000000	Spectrum20703 scans:17649,	ELDTVTLEDIKEH	E[+28]LDTVTLEDIKEH	R	V	98.800000	33.100000	51.400000	21.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1604.840000	3.000000	-0.000170	-0.100000	66.000000	78.000000	0.250333	0.095733	0.438900	0.067600	0.182650	9.143150	NaN	NaN	NaN	0.314608	0.138892	0.763172	0.078639	0.248014	13.667912	NaN	NaN	NaN	0.196623	0.193453	0.344066	0.175006	0.403076	0.200817	0.128376	0.160425	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLG2	sp|Q96I99-2|SUCB2_HUMAN	SUCB2_HUMAN	Isoform 2 of Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLG2	100.000000	0.002630	47715.100000	2.000000	2.000000	2.000000	Spectrum57484 scans:30214,	ELELKVPLVVR	E[+28]LELKVPLVVR	R	L	99.700000	36.500000	44.600000	25.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1359.910000	3.000000	0.001100	0.790000	382.000000	392.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	sp|P68402|PA1B2_HUMAN	PA1B2_HUMAN	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	100.000000	0.014500	25551.500000	4.000000	11.000000	11.000000	Spectrum66228 scans:40561,	ELFSPLHALNFGIGGDTTR	E[+28]LFSPLHALNFGIGGDTTR	R	H	99.700000	52.500000	53.100000	41.900000	Dimethyl (+28)	2072.070000	3.000000	-0.001800	-0.860000	61.000000	79.000000	NaN	9.391450	NaN	0.590450	11.335100	3.219800	NaN	NaN	NaN	NaN	13.625278	NaN	0.686869	15.391540	4.813215	NaN	NaN	NaN	0.686869	14.508409	NaN	0.000000	NaN	0.000000	1.000000	0.160092	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	sp|P68402|PA1B2_HUMAN	PA1B2_HUMAN	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	100.000000	0.014500	25551.500000	4.000000	11.000000	11.000000	Spectrum66242 scans:40577,	ELFSPLHALNFGIGGDTTR	E[+28]LFSPLHALNFGIGGDTTR	R	H	99.700000	56.500000	53.600000	45.900000	Dimethyl (+28), Label:13C(6) (+6)	2078.090000	3.000000	-0.003200	-1.600000	61.000000	79.000000	NaN	9.391450	NaN	0.590450	11.335100	3.219800	NaN	NaN	NaN	NaN	13.625278	NaN	0.686869	15.391540	4.813215	NaN	NaN	NaN	0.686869	14.508409	NaN	0.000000	NaN	0.000000	1.000000	0.159761	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	GUAA_HUMAN	GUAA_HUMAN	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	100.000000	0.013200	76698.700000	5.000000	10.000000	10.000000	Spectrum57014 scans:29630,	ELGLPEELVSR	E[+28]LGLPEELVSR	R	H	99.100000	54.300000	50.300000	28.000000	Dimethyl (+28)	1268.700000	2.000000	-0.000280	-0.220000	425.000000	435.000000	0.731067	1.623600	2.052433	0.100400	0.668550	6.061800	NaN	NaN	NaN	0.918772	2.355547	3.568829	0.116795	0.907801	9.061664	NaN	NaN	NaN	0.517783	1.631674	0.419504	0.265821	0.489798	0.304221	0.127808	0.159650	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	GUAA_HUMAN	GUAA_HUMAN	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	100.000000	0.013200	76698.700000	5.000000	10.000000	10.000000	Spectrum57005 scans:29620,	ELGLPEELVSR	E[+28]LGLPEELVSR	R	H	99.100000	55.000000	50.300000	36.700000	Dimethyl (+28), Label:13C(6) (+6)	1274.720000	2.000000	-0.000150	-0.120000	425.000000	435.000000	0.731067	1.623600	2.052433	0.100400	0.668550	6.061800	NaN	NaN	NaN	0.918772	2.355547	3.568829	0.116795	0.907801	9.061664	NaN	NaN	NaN	0.517783	1.631674	0.419504	0.265821	0.489304	0.303122	0.126967	0.159540	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	THOP1_HUMAN	THOP1_HUMAN	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	100.000000	0.011900	78822.600000	5.000000	8.000000	9.000000	Spectrum35504 scans:4844,	ELIEQTKR	E[+28]LIEQTKR	R	V	99.000000	58.200000	48.800000	16.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1089.650000	2.000000	-0.000710	-0.650000	39.000000	46.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.009440	92453.700000	2.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.46539.46539.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46539"	ELISNASDALDKIR	E[+28]LISNASDALDKIR	R	L	99.700000	83.400000	56.400000	64.200000	Dimethyl (+28), Dimethyl (+28)	1599.880000	2.000000	-0.000820	-0.510000	103.000000	116.000000	50.105100	22.005833	0.442133	0.234900	0.177150	0.829700	NaN	NaN	NaN	62.969838	31.926444	0.768794	0.273259	0.240546	1.240302	NaN	NaN	NaN	31.621548	16.083495	0.482608	0.484689	0.561963	0.550531	0.125656	0.159211	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.009440	92453.700000	2.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.44953.44953.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44953"	ELISNASDALDKIR	E[+28]LISNASDALDKIR	R	L	99.700000	86.100000	56.500000	73.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1609.930000	2.000000	-0.002900	-1.800000	103.000000	116.000000	50.105100	22.005833	0.442133	0.234900	0.177150	0.829700	NaN	NaN	NaN	62.969838	31.926444	0.768794	0.273259	0.240546	1.240302	NaN	NaN	NaN	31.621548	16.083495	0.482608	0.484689	0.561775	0.550351	0.125588	0.159101	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.007000	92453.700000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.43558.43558.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43558"	ELISNASDALDKIR	E[+28]LISNASDALDKIR	R	L	99.700000	88.900000	56.600000	71.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1617.900000	2.000000	-0.003300	-2.100000	103.000000	116.000000	50.105100	22.005833	0.442133	0.234900	0.177150	0.829700	NaN	NaN	NaN	62.969838	31.926444	0.768794	0.273259	0.240546	1.240302	NaN	NaN	NaN	31.621548	16.083495	0.482608	0.484689	0.560271	0.549811	0.125384	0.158774	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	NUCL_HUMAN	NUCL_HUMAN	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	100.000000	0.005010	76597.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.26200.26200.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26200"	ELKEVFEDAAEIR	E[+28]LKEVFEDAAEIR	D	L	99.700000	67.300000	56.100000	47.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1621.870000	2.000000	0.001100	0.680000	408.000000	420.000000	7.547933	4.709333	0.722333	41.671100	23.244450	0.550900	NaN	NaN	NaN	9.485903	6.832382	1.256013	48.475905	31.562835	0.823529	NaN	NaN	NaN	28.980904	19.197609	0.016792	0.118418	0.019488	0.134284	0.125316	0.158556	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	NUCL_HUMAN	NUCL_HUMAN	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	100.000000	0.017900	76597.900000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.22856.22856.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22856"	ELKEVFEDAAEIR	E[+28]LKEVFEDAAEIR	D	L	99.300000	86.600000	56.600000	62.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1613.890000	3.000000	0.003000	1.900000	408.000000	420.000000	7.547933	4.709333	0.722333	41.671100	23.244450	0.550900	NaN	NaN	NaN	9.485903	6.832382	1.256013	48.475905	31.562835	0.823529	NaN	NaN	NaN	28.980904	19.197609	0.016792	0.118418	0.019481	0.134109	0.125180	0.158447	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	NUCL_HUMAN	NUCL_HUMAN	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	100.000000	0.017900	76597.900000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.22868.22868.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22868"	ELKEVFEDAAEIR	E[+28]LKEVFEDAAEIR	D	L	99.600000	61.800000	55.700000	49.800000	Dimethyl (+28), Dimethyl (+28)	1603.840000	2.000000	-0.001600	-1.000000	408.000000	420.000000	7.547933	4.709333	0.722333	41.671100	23.244450	0.550900	NaN	NaN	NaN	9.485903	6.832382	1.256013	48.475905	31.562835	0.823529	NaN	NaN	NaN	28.980904	19.197609	0.016792	0.118418	0.019475	0.133978	0.124843	0.158339	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Actin-related protein 2 OS=Homo sapiens GN=ACTR2 PE=1 SV=1	sp|P61160-2|ARP2_HUMAN	ARP2_HUMAN	Isoform 2 of Actin-related protein 2 OS=Homo sapiens GN=ACTR2	100.000000	0.002630	0.000000	2.000000	2.000000	2.000000	Spectrum46224 scans:17201,	ELKQLYLER	NaN	R	V	98.900000	32.200000	48.600000	11.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1256.770000	3.000000	0.001000	0.810000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1	SND1_HUMAN	SND1_HUMAN	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1	100.000000	0.018400	101980.500000	4.000000	9.000000	14.000000	Spectrum27594 scans:8857,	ELLAAEAR	NaN	D	A	99.000000	52.400000	47.900000	0.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	909.510000	2.000000	-0.001100	-1.200000	478.000000	485.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Condensin-2 complex subunit G2 OS=Homo sapiens GN=NCAPG2 PE=1 SV=1	sp|Q86XI2|CNDG2_HUMAN	CNDG2_HUMAN	Condensin-2 complex subunit G2 OS=Homo sapiens GN=NCAPG2 PE=1 SV=1	25.700000	0.000000	130946.100000	0.000000	0.000000	0.000000	Spectrum45986 scans:16926,	ELLDELSR	NaN	N	K	99.000000	58.100000	47.900000	0.000000	Dimethyl (+28)	1001.540000	2.000000	0.000360	0.360000	37.000000	44.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Condensin-2 complex subunit G2 OS=Homo sapiens GN=NCAPG2 PE=1 SV=1	sp|Q86XI2|CNDG2_HUMAN	CNDG2_HUMAN	Condensin-2 complex subunit G2 OS=Homo sapiens GN=NCAPG2 PE=1 SV=1	0.400000	0.000000	130946.100000	0.000000	0.000000	0.000000	Nsco_Tails_biological_replicate_3_fraction6A.16925.16925.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16925"	ELLDELSR	NaN	N	K	98.500000	51.900000	51.900000	0.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1011.550000	2.000000	-0.000300	-0.300000	37.000000	44.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform PML-11 of Protein PML OS=Homo sapiens GN=PML	sp|P29590-11|PML_HUMAN	PML_HUMAN	Isoform PML-11 of Protein PML OS=Homo sapiens GN=PML	100.000000	0.001320	92546.500000	1.000000	1.000000	1.000000	Spectrum7622 scans:29130,	ELLEAVDAR	NaN	R	Y	98.800000	51.700000	48.500000	16.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1052.570000	2.000000	0.000330	0.310000	296.000000	304.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	THOP1_HUMAN	THOP1_HUMAN	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	100.000000	0.011900	78822.600000	5.000000	8.000000	9.000000	Spectrum54384 scans:26536,	ELLEKLIESR	NaN	R	Q	99.400000	34.500000	48.100000	16.100000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1294.810000	3.000000	0.000350	0.270000	534.000000	543.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	THOP1_HUMAN	THOP1_HUMAN	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	100.000000	0.011900	78822.600000	5.000000	8.000000	9.000000	Spectrum54406 scans:26560,	ELLEKLIESR	NaN	R	Q	99.600000	38.600000	49.500000	16.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1302.790000	3.000000	-0.000065	-0.050000	534.000000	543.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cell growth-regulating nucleolar protein OS=Homo sapiens GN=LYAR PE=1 SV=2	LYAR_HUMAN	LYAR_HUMAN	Cell growth-regulating nucleolar protein OS=Homo sapiens GN=LYAR PE=1 SV=2	99.900000	0.002630	43597.100000	1.000000	2.000000	2.000000	Spectrum12682 scans:46816,	ELLEQISAFDNVPR	E[+28]LLEQISAFDNVPR	R	K	99.700000	45.200000	51.800000	27.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1667.880000	3.000000	0.000410	0.250000	96.000000	109.000000	1.489933	0.832167	0.415100	130.430350	132.066550	1.074250	NaN	NaN	NaN	1.872481	1.207322	0.721788	151.729359	179.328603	1.605875	NaN	NaN	NaN	76.800920	90.267963	0.382159	0.423510	0.440855	0.475900	0.122723	0.156201	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cell growth-regulating nucleolar protein OS=Homo sapiens GN=LYAR PE=1 SV=2	LYAR_HUMAN	LYAR_HUMAN	Cell growth-regulating nucleolar protein OS=Homo sapiens GN=LYAR PE=1 SV=2	99.900000	0.002630	43597.100000	1.000000	2.000000	2.000000	Spectrum12674 scans:46778,	ELLEQISAFDNVPR	E[+28]LLEQISAFDNVPR	R	K	99.700000	55.900000	51.700000	38.000000	Dimethyl (+28)	1657.870000	3.000000	0.000500	0.300000	96.000000	109.000000	1.489933	0.832167	0.415100	130.430350	132.066550	1.074250	NaN	NaN	NaN	1.872481	1.207322	0.721788	151.729359	179.328603	1.605875	NaN	NaN	NaN	76.800920	90.267963	0.382159	0.423510	0.440708	0.474364	0.122528	0.156095	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	LRC47_HUMAN	LRC47_HUMAN	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	100.000000	0.029000	63456.700000	4.000000	13.000000	22.000000	Spectrum55328 scans:27622,	ELLLTGPGLEER	E[+28]LLLTGPGLEER	R	V	98.900000	54.800000	50.700000	33.200000	Dimethyl (+28)	1353.750000	2.000000	0.000038	0.028000	23.000000	34.000000	0.405733	0.934733	2.864967	0.742050	0.708300	2.516800	NaN	NaN	NaN	0.509907	1.356127	4.981684	0.863225	0.961776	3.762314	NaN	NaN	NaN	0.686566	1.158952	0.160329	0.107283	0.184586	0.120126	0.122463	0.155990	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	LRC47_HUMAN	LRC47_HUMAN	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	100.000000	0.029000	63456.700000	4.000000	13.000000	22.000000	Spectrum55325 scans:27619,	ELLLTGPGLEER	E[+28]LLLTGPGLEER	R	V	99.500000	61.700000	50.700000	26.600000	Dimethyl (+28), Label:13C(6) (+6)	1359.770000	2.000000	-0.001200	-0.860000	23.000000	34.000000	0.405733	0.934733	2.864967	0.742050	0.708300	2.516800	NaN	NaN	NaN	0.509907	1.356127	4.981684	0.863225	0.961776	3.762314	NaN	NaN	NaN	0.686566	1.158952	0.160329	0.107283	0.184403	0.120087	0.122269	0.155885	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Myosin regulatory light chain 12A OS=Homo sapiens GN=MYL12A PE=1 SV=2	ML12B_HUMAN	ML12B_HUMAN	Myosin regulatory light chain 12B OS=Homo sapiens GN=MYL12B PE=1 SV=2	100.000000	0.026300	19762.300000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction2A.12734.12734.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12734"	ELLTTMGDR	E[+28]LLTTMGDR	R	F	99.500000	65.600000	50.900000	39.000000	Dimethyl (+28)	1062.540000	2.000000	0.000190	0.180000	125.000000	133.000000	1.269700	0.936467	0.927433	0.535650	2.426400	3.564850	NaN	NaN	NaN	1.595702	1.358642	1.612647	0.623121	3.294725	5.329023	NaN	NaN	NaN	1.109411	2.326683	0.262993	0.251003	0.302381	0.280871	0.121435	0.155675	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	PYR1_HUMAN	PYR1_HUMAN	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	100.000000	0.021100	242964.500000	6.000000	12.000000	16.000000	Spectrum18320 scans:10225,	ELSDLESAR	E[+28]LSDLESAR	R	Q	98.600000	66.400000	47.600000	43.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1056.530000	2.000000	0.002000	1.900000	1067.000000	1075.000000	1.620033	0.449133	0.321100	0.418200	0.608950	2.789300	0.611900	1.080514	1.207043	2.035985	0.651610	0.558338	0.486491	0.826872	4.169669	0.409257	0.460181	0.578418	0.977244	0.646221	0.206427	0.025815	0.237265	0.028877	0.008275	0.010600	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	PYR1_HUMAN	PYR1_HUMAN	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	100.000000	0.004670	242964.500000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.25622.25622.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25622"	ELSDLESAR	E[+28]LSDLESAR	R	Q	98.500000	52.300000	50.600000	29.800000	Dimethyl (+28)	1046.520000	2.000000	0.000300	0.290000	1067.000000	1075.000000	1.620033	0.449133	0.321100	0.418200	0.608950	2.789300	0.611900	1.080514	1.207043	2.035985	0.651610	0.558338	0.486491	0.826872	4.169669	0.409257	0.460181	0.578418	0.977244	0.646221	0.206427	0.025815	0.237186	0.028840	0.008271	0.010593	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=4 SV=1	E7EX90_HUMAN	E7EX90_HUMAN	Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=4 SV=1	100.000000	0.006590	139078.900000	3.000000	5.000000	5.000000	Spectrum16445 scans:6390,	ELTNQQEASVER	E[+28]LTNQQEASVER	R	Q	99.700000	79.000000	48.200000	33.500000	Dimethyl (+28)	1430.700000	2.000000	-0.001800	-1.300000	516.000000	527.000000	24.590533	36.744433	1.456533	10.797000	NaN	1.336550	NaN	NaN	NaN	30.904277	53.309459	2.532661	12.560128	NaN	1.997982	NaN	NaN	NaN	21.732203	53.309459	0.000000	NaN	0.000000	NaN	0.120801	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=4 SV=1	E7EX90_HUMAN	E7EX90_HUMAN	Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=4 SV=1	100.000000	0.006590	139078.900000	3.000000	5.000000	5.000000	Spectrum16442 scans:6385,	ELTNQQEASVER	E[+28]LTNQQEASVER	R	Q	99.700000	91.500000	48.600000	48.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1440.710000	2.000000	-0.000210	-0.150000	516.000000	527.000000	24.590533	36.744433	1.456533	10.797000	NaN	1.336550	NaN	NaN	NaN	30.904277	53.309459	2.532661	12.560128	NaN	1.997982	NaN	NaN	NaN	21.732203	53.309459	0.000000	NaN	0.000000	NaN	0.120738	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=2 SV=1	SYSC_HUMAN	SYSC_HUMAN	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3	100.000000	0.004720	58760.600000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.25100.25100.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25100"	ELVSCSNCTDYQAR	E[+28]LVSC[+57]SNC[+57]TDYQAR	R	R	99.100000	47.300000	45.200000	45.900000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1739.750000	2.000000	-0.002800	-1.600000	391.000000	404.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=2 SV=1	SYSC_HUMAN	SYSC_HUMAN	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3	100.000000	0.004670	58760.600000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.23897.23897.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23897"	ELVSCSNCTDYQAR	E[+28]LVSC[+57]SNC[+57]TDYQAR	R	R	99.400000	59.300000	45.600000	59.100000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57)	1729.750000	2.000000	0.005400	3.100000	391.000000	404.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Asparagine synthetase [glutamine-hydrolyzing] OS=Homo sapiens GN=ASNS PE=1 SV=4	sp|P08243-2|ASNS_HUMAN	ASNS_HUMAN	Isoform 2 of Asparagine synthetase [glutamine-hydrolyzing] OS=Homo sapiens GN=ASNS	99.900000	0.001320	0.000000	1.000000	1.000000	1.000000	Spectrum70308 scans:45476,	ELYLFDVLR	E[+28]LYLFDVLR	R	A	99.100000	56.000000	49.900000	36.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1204.670000	2.000000	0.000190	0.160000	0.000000	0.000000	0.787600	0.393100	0.499100	0.205650	1.080950	4.749100	NaN	NaN	NaN	0.989820	0.570316	0.867849	0.239232	1.467785	7.099335	NaN	NaN	NaN	0.614526	1.019050	0.349029	0.264067	0.399713	0.293690	0.119183	0.154842	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum65171 scans:39366,	EMAGDNKLLGQFTLIGIPPAPR	E[+28]M[+16]AGDNKLLGQFTLIGIPPAPR	R	G	99.600000	44.100000	55.100000	40.200000	Dimethyl (+28), Oxidation (+16), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2419.360000	3.000000	0.001100	0.470000	492.000000	513.000000	NaN	NaN	NaN	NaN	NaN	6.506850	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	9.726960	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Dermcidin OS=Homo sapiens GN=DCD	sp|P81605|DCD_HUMAN	DCD_HUMAN	Dermcidin OS=Homo sapiens GN=DCD PE=1 SV=2	98.600000	0.002630	11266.100000	1.000000	1.000000	2.000000	Spectrum21617 scans:4298,	ENAGEDPGLAR	ENAGEDPGLAR	K	Q	99.700000	59.400000	44.300000	43.900000		1127.520000	2.000000	-0.000640	-0.570000	43.000000	53.000000	0.424000	0.139367	1.004000	1.077450	0.298600	0.189450	NaN	NaN	NaN	0.532864	0.202196	1.745783	1.253395	0.405459	0.283205	NaN	NaN	NaN	0.893130	0.303827	0.244088	0.205504	0.279348	0.227681	0.119060	0.154017	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1	CALR_HUMAN	CALR_HUMAN	Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1	100.000000	0.005760	48124.900000	1.000000	1.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.31493.31493.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31493"	EPAVYFKEQFLDGDGWTSR	E[+28]PAVYFKEQFLDGDGWTSR	A	W	99.700000	80.600000	55.200000	77.200000	Dimethyl (+28), Dimethyl (+28)	2300.110000	2.000000	-0.004500	-2.000000	18.000000	36.000000	219.494767	163.687433	0.742333	326.184650	316.418050	1.007250	NaN	NaN	NaN	275.851158	237.480559	1.290790	379.449935	429.653133	1.505718	NaN	NaN	NaN	327.650546	333.566846	0.000000	0.000000	0.000000	0.000000	0.117667	0.153914	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1	CALR_HUMAN	CALR_HUMAN	Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1	100.000000	0.010000	48124.900000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33024.33024.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33024"	EPAVYFKEQFLDGDGWTSR	E[+28]PAVYFKEQFLDGDGWTSR	A	W	98.600000	63.600000	57.400000	63.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2310.160000	3.000000	-0.000330	-0.140000	18.000000	36.000000	219.494767	163.687433	0.742333	326.184650	316.418050	1.007250	NaN	NaN	NaN	275.851158	237.480559	1.290790	379.449935	429.653133	1.505718	NaN	NaN	NaN	327.650546	333.566846	0.000000	0.000000	0.000000	0.000000	0.117607	0.153404	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1	CALR_HUMAN	CALR_HUMAN	Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1	100.000000	0.010000	48124.900000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33117.33117.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33117"	EPAVYFKEQFLDGDGWTSR	E[+28]PAVYFKEQFLDGDGWTSR	A	W	99.700000	91.800000	56.100000	87.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2318.130000	2.000000	-0.002300	-0.980000	18.000000	36.000000	219.494767	163.687433	0.742333	326.184650	316.418050	1.007250	NaN	NaN	NaN	275.851158	237.480559	1.290790	379.449935	429.653133	1.505718	NaN	NaN	NaN	327.650546	333.566846	0.000000	0.000000	0.000000	0.000000	0.116306	0.153302	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Periodic tryptophan protein 1 homolog OS=Homo sapiens GN=PWP1 PE=2 SV=1	B4DJV5_HUMAN	B4DJV5_HUMAN	Periodic tryptophan protein 1 homolog OS=Homo sapiens GN=PWP1 PE=2 SV=1	98.300000	0.002630	49021.400000	1.000000	2.000000	2.000000	Spectrum3742 scans:19293,	EPLEDGDPEDDR	E[+28]PLEDGDPEDDR	R	T	99.600000	61.500000	39.300000	50.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1423.590000	2.000000	-0.003500	-2.500000	12.000000	23.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Periodic tryptophan protein 1 homolog OS=Homo sapiens GN=PWP1 PE=2 SV=1	PWP1_HUMAN	PWP1_HUMAN	Periodic tryptophan protein 1 homolog OS=Homo sapiens GN=PWP1 PE=1 SV=1	98.300000	0.002630	55810.600000	1.000000	2.000000	2.000000	Spectrum3740 scans:19289,	EPLEDGDPEDDR	E[+28]PLEDGDPEDDR	R	T	99.500000	62.700000	38.500000	57.100000	Dimethyl (+28)	1413.590000	2.000000	-0.003800	-2.700000	74.000000	85.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1	SMD1_HUMAN	SMD1_HUMAN	Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1	99.900000	0.026300	13263.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction2A.18933.18933.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18933"	EPVQLETLSIR	E[+28]PVQLETLSIR	R	G	99.700000	71.500000	54.800000	53.800000	Dimethyl (+28), Label:13C(6) (+6)	1317.760000	2.000000	-0.000360	-0.270000	51.000000	61.000000	0.497100	0.238767	0.480733	1.026100	2.969650	5.355500	NaN	NaN	NaN	0.624733	0.346407	0.835913	1.193660	4.032385	8.005830	NaN	NaN	NaN	0.909196	2.189396	0.193039	0.445444	0.219047	0.491164	0.113288	0.152998	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1	SMD1_HUMAN	SMD1_HUMAN	Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1	100.000000	0.005270	13263.900000	1.000000	3.000000	4.000000	Spectrum54161 scans:26280,	EPVQLETLSIR	E[+28]PVQLETLSIR	R	G	99.300000	59.800000	50.600000	41.200000	Dimethyl (+28)	1311.740000	2.000000	-0.001600	-1.200000	51.000000	61.000000	0.497100	0.238767	0.480733	1.026100	2.969650	5.355500	NaN	NaN	NaN	0.624733	0.346407	0.835913	1.193660	4.032385	8.005830	NaN	NaN	NaN	0.909196	2.189396	0.193039	0.445444	0.218975	0.491008	0.112298	0.152897	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1	SMD1_HUMAN	SMD1_HUMAN	Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1	100.000000	0.005270	13263.900000	1.000000	3.000000	4.000000	Spectrum54191 scans:26313,	EPVQLETLSIR	E[+28]PVQLETLSIR	R	G	99.700000	66.600000	50.700000	45.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1321.750000	2.000000	-0.001400	-1.100000	51.000000	61.000000	0.497100	0.238767	0.480733	1.026100	2.969650	5.355500	NaN	NaN	NaN	0.624733	0.346407	0.835913	1.193660	4.032385	8.005830	NaN	NaN	NaN	0.909196	2.189396	0.193039	0.445444	0.218904	0.490852	0.112243	0.152796	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.051400	60327.200000	5.000000	10.000000	39.000000	Spectrum12451 scans:45585,	EQLAIAEF	NaN	R	A	98.600000	51.800000	46.900000	23.100000	Dimethyl (+28)	947.500000	2.000000	0.000400	0.420000	434.000000	441.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.051400	60327.200000	5.000000	10.000000	39.000000	Spectrum11000 scans:39437,	EQLAIAEFAR	E[+28]QLAIAEFAR	R	S	98.600000	50.800000	49.900000	13.700000	Dimethyl (+28), Label:13C(6) (+6)	1180.650000	2.000000	-0.000890	-0.750000	434.000000	443.000000	0.607333	0.265333	0.436367	0.410050	0.815700	2.499550	NaN	NaN	3.753557	0.763269	0.384950	0.758767	0.477010	1.107611	3.736527	NaN	NaN	1.798714	0.620140	0.746281	0.144404	0.287057	0.163272	0.315917	0.111647	0.152595	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.051400	60327.200000	5.000000	10.000000	39.000000	Spectrum20949 scans:19732,	EQLAIAEFAR	E[+28]QLAIAEFAR	R	S	99.600000	64.000000	49.400000	31.300000	Dimethyl (+28)	1174.630000	2.000000	-0.000900	-0.770000	434.000000	443.000000	0.607333	0.265333	0.436367	0.410050	0.815700	2.499550	NaN	NaN	3.753557	0.763269	0.384950	0.758767	0.477010	1.107611	3.736527	NaN	NaN	1.798714	0.620140	0.746281	0.144404	0.287057	0.163219	0.315817	0.111432	0.152494	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH	tr|K7ELL7|K7ELL7_HUMAN	K7ELL7_HUMAN	Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=1	100.000000	0.015000	0.000000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.19153.19153.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19153"	EQTQAFIDAAQEAR	E[+28]QTQAFIDAAQEAR	D	N	99.700000	89.400000	53.100000	76.800000	Dimethyl (+28)	1604.790000	2.000000	0.005900	3.700000	0.000000	0.000000	0.356200	0.282767	0.800700	0.852750	0.657750	0.771500	NaN	NaN	NaN	0.447656	0.410243	1.392280	0.992002	0.893136	1.153300	NaN	NaN	NaN	0.719829	0.651689	0.230133	0.225882	0.260033	0.247727	0.111058	0.152394	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH	tr|K7ELL7|K7ELL7_HUMAN	K7ELL7_HUMAN	Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=1	100.000000	0.015000	0.000000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.19174.19174.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19174"	EQTQAFIDAAQEAR	E[+28]QTQAFIDAAQEAR	D	N	99.700000	87.100000	53.800000	74.300000	Dimethyl (+28), Label:13C(6) (+6)	1610.800000	2.000000	0.001300	0.830000	0.000000	0.000000	0.356200	0.282767	0.800700	0.852750	0.657750	0.771500	NaN	NaN	NaN	0.447656	0.410243	1.392280	0.992002	0.893136	1.153300	NaN	NaN	NaN	0.719829	0.651689	0.230133	0.225882	0.259949	0.247258	0.110002	0.152293	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH	tr|K7ELL7|K7ELL7_HUMAN	K7ELL7_HUMAN	Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=1	100.000000	0.026900	0.000000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.16903.16903.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16903"	EQTQAFIDAAQEAR	E[+28]QTQAFIDAAQEAR	D	N	99.700000	95.800000	52.900000	82.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1614.790000	2.000000	-0.002400	-1.500000	0.000000	0.000000	0.356200	0.282767	0.800700	0.852750	0.657750	0.771500	NaN	NaN	NaN	0.447656	0.410243	1.392280	0.992002	0.893136	1.153300	NaN	NaN	NaN	0.719829	0.651689	0.230133	0.225882	0.259105	0.246558	0.109949	0.151893	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Guanine nucleotide-binding protein-like 1 OS=Homo sapiens GN=GNL1 PE=1 SV=2	sp|P36915|GNL1_HUMAN	GNL1_HUMAN	Guanine nucleotide-binding protein-like 1 OS=Homo sapiens GN=GNL1 PE=1 SV=2	99.700000	0.002310	68642.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.44161.44161.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44161"	EQVLQPVSAELLELDIR	E[+28]QVLQPVSAELLELDIR	R	E	99.500000	84.500000	58.500000	51.600000	Dimethyl (+28)	1979.090000	3.000000	0.000430	0.220000	102.000000	118.000000	0.102600	0.658100	0.671400	0.541150	2.044500	3.227350	NaN	NaN	NaN	0.128943	0.954783	1.167449	0.629519	2.776156	4.824501	NaN	NaN	NaN	0.379231	1.865469	0.371381	0.289119	0.418000	0.314793	0.109897	0.151794	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Molybdopterin adenylyltransferase OS=Homo sapiens GN=GPHN PE=4 SV=1	F5H039_HUMAN	F5H039_HUMAN	Molybdopterin adenylyltransferase OS=Homo sapiens GN=GPHN PE=4 SV=1	99.900000	0.002630	84717.400000	1.000000	2.000000	2.000000	Spectrum18357 scans:10286,	ESDDGTEELEVR	E[+28]SDDGTEELEVR	R	I	99.700000	74.800000	44.500000	64.300000	Dimethyl (+28), Label:13C(6) (+6)	1411.640000	2.000000	-0.001600	-1.100000	481.000000	492.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Molybdopterin adenylyltransferase OS=Homo sapiens GN=GPHN PE=4 SV=1	F5H039_HUMAN	F5H039_HUMAN	Molybdopterin adenylyltransferase OS=Homo sapiens GN=GPHN PE=4 SV=1	99.900000	0.002630	84717.400000	1.000000	2.000000	2.000000	Spectrum18353 scans:10281,	ESDDGTEELEVR	E[+28]SDDGTEELEVR	R	I	99.700000	82.700000	43.000000	67.700000	Dimethyl (+28)	1405.620000	2.000000	-0.002000	-1.400000	481.000000	492.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.051400	60327.200000	5.000000	10.000000	39.000000	Spectrum14257 scans:2798,	ESDITKER	NaN	R	I	99.000000	40.500000	48.800000	9.580000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1042.590000	3.000000	0.000290	0.270000	267.000000	274.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.051400	60327.200000	5.000000	10.000000	39.000000	Spectrum21332 scans:2543,	ESDITKER	NaN	R	I	99.000000	41.500000	48.500000	9.290000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1050.570000	3.000000	0.000600	0.570000	267.000000	274.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	SSBP_HUMAN	SSBP_HUMAN	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	100.000000	0.032900	17241.700000	2.000000	8.000000	25.000000	Spectrum9635 scans:34796,	ESETTTSLVLER	NaN	H	S	99.000000	53.900000	48.700000	37.900000	Glu->pyro-Glu (-18)	1345.670000	2.000000	-0.001700	-1.300000	17.000000	28.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	SSBP_HUMAN	SSBP_HUMAN	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	100.000000	0.032900	17241.700000	2.000000	8.000000	25.000000	Spectrum7610 scans:29110,	ESETTTSLVLER	E[+28]SETTTSLVLER	H	S	99.700000	85.200000	49.700000	68.100000	Dimethyl (+28)	1391.710000	2.000000	-0.002900	-2.100000	17.000000	28.000000	0.357833	0.314167	0.878400	1.296000	0.720950	0.556300	1.114843	1.470671	1.809543	0.449709	0.455798	1.527387	1.507634	0.978953	0.831602	0.745639	0.626345	0.867138	0.900994	0.687032	0.103651	0.046772	0.116023	0.050607	0.007156	0.010302	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	SSBP_HUMAN	SSBP_HUMAN	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	99.900000	0.008960	17241.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.14522.14522.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14522"	ESETTTSLVLER	E[+28]SETTTSLVLER	H	S	99.700000	99.900000	53.800000	79.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1401.720000	2.000000	-0.002700	-1.900000	17.000000	28.000000	0.357833	0.314167	0.878400	1.296000	0.720950	0.556300	1.114843	1.470671	1.809543	0.449709	0.455798	1.527387	1.507634	0.978953	0.831602	0.745639	0.626345	0.867138	0.900994	0.687032	0.103651	0.046772	0.115985	0.050592	0.007150	0.010296	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	SSBP_HUMAN	SSBP_HUMAN	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	100.000000	0.011600	17241.700000	1.000000	2.000000	5.000000	Nsco_Tails_biological_replicate_3_fraction6A.17420.17420.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17420"	ESETTTSLVLER	E[+28]SETTTSLVLER	H	S	99.700000	100.000000	54.200000	79.200000	Dimethyl (+28), Label:13C(6) (+6)	1397.730000	2.000000	-0.001600	-1.200000	17.000000	28.000000	0.357833	0.314167	0.878400	1.296000	0.720950	0.556300	1.114843	1.470671	1.809543	0.449709	0.455798	1.527387	1.507634	0.978953	0.831602	0.745639	0.626345	0.867138	0.900994	0.687032	0.103651	0.046772	0.115761	0.050576	0.007038	0.010289	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH	tr|K7ELL7|K7ELL7_HUMAN	K7ELL7_HUMAN	Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=1	100.000000	0.005760	0.000000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.10582.10582.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10582"	ESLQQMAEVTR	E[+28]SLQQMAEVTR	R	E	99.700000	60.900000	51.300000	50.600000	Dimethyl (+28), Oxidation (+16)	1334.650000	2.000000	-0.001500	-1.100000	0.000000	0.000000	0.502633	0.325533	0.652833	40.234200	0.872550	0.039250	NaN	NaN	NaN	0.631687	0.472289	1.135165	46.804362	1.184805	0.058674	NaN	NaN	NaN	23.718025	0.828547	0.459839	0.258519	0.513233	0.277642	0.103182	0.150804	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC	sp|Q00610|CLH1_HUMAN	CLH1_HUMAN	Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5	100.000000	0.011900	191600.900000	7.000000	9.000000	9.000000	Spectrum2004 scans:14715,	ESNCYDPER	E[+28]SNC[+57]YDPER	R	V	99.100000	41.000000	36.000000	34.000000	Dimethyl (+28), Carbamidomethyl (+57)	1196.480000	2.000000	-0.001100	-0.960000	750.000000	758.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3	sp|P52272|HNRPM_HUMAN	HNRPM_HUMAN	Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3	100.000000	0.003950	77499.300000	3.000000	3.000000	3.000000	Spectrum705 scans:10736,	ESPEVAER	NaN	F	A	98.600000	46.000000	45.700000	19.100000	Dimethyl (+28)	943.460000	2.000000	-0.000520	-0.550000	700.000000	707.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1	EIF3A_HUMAN	EIF3A_HUMAN	Eukaryotic translation initiation factor 3 subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1	100.000000	0.007900	166556.900000	4.000000	6.000000	6.000000	Spectrum13679 scans:1777,	ESRPSEER	NaN	R	E	99.000000	33.300000	45.800000	6.360000	Dimethyl (+28), Label:13C(6)15N(4) (+10), Label:13C(6)15N(4) (+10)	1036.500000	3.000000	-0.000490	-0.470000	1194.000000	1201.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A	sp|P78559|MAP1A_HUMAN	MAP1A_HUMAN	Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A PE=1 SV=6	100.000000	0.015800	305468.400000	8.000000	11.000000	12.000000	Spectrum11191 scans:39928,	ESTFLDEGPDDEQEVPLR	E[+28]STFLDEGPDDEQEVPLR	R	E	99.700000	100.000000	46.900000	91.800000	Dimethyl (+28)	2102.960000	2.000000	-0.005200	-2.500000	1726.000000	1743.000000	1.858967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.336266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.336266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A	sp|P78559|MAP1A_HUMAN	MAP1A_HUMAN	Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A PE=1 SV=6	100.000000	0.015800	305468.400000	8.000000	11.000000	12.000000	Spectrum11174 scans:39862,	ESTFLDEGPDDEQEVPLR	E[+28]STFLDEGPDDEQEVPLR	R	E	99.700000	79.800000	47.400000	74.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2112.970000	3.000000	-0.001300	-0.630000	1726.000000	1743.000000	1.858967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.336266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.336266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=2 SV=1	B4DXP5_HUMAN	B4DXP5_HUMAN	Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=2 SV=1	99.900000	0.001320	33908.800000	1.000000	1.000000	1.000000	Spectrum6828 scans:27120,	ESTGAQVQVAGDMLPNSTER	E[+28]STGAQVQVAGDMLPNSTER	R	A	99.700000	64.900000	48.600000	57.900000	Dimethyl (+28), Oxidation (+16)	2133.000000	3.000000	-0.003200	-1.500000	125.000000	144.000000	NaN	1.339333	NaN	NaN	NaN	1.522050	NaN	NaN	NaN	NaN	1.943128	NaN	NaN	NaN	2.275282	NaN	NaN	NaN	NaN	1.943128	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=2 SV=1	B4DXP5_HUMAN	B4DXP5_HUMAN	Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=2 SV=1	43.500000	0.000000	33908.800000	0.000000	0.000000	0.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.37987.37987.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37987"	ESTGAQVQVAGDMLPNSTER	E[+28]STGAQVQVAGDMLPNSTER	R	A	99.700000	68.400000	53.400000	65.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2127.010000	2.000000	-0.008900	-4.200000	125.000000	144.000000	NaN	1.339333	NaN	NaN	NaN	1.522050	NaN	NaN	NaN	NaN	1.943128	NaN	NaN	NaN	2.275282	NaN	NaN	NaN	NaN	1.943128	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=2 SV=1	B4DXP5_HUMAN	B4DXP5_HUMAN	Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=2 SV=1	43.500000	0.000000	33908.800000	0.000000	0.000000	0.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.37942.37942.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37942"	ESTGAQVQVAGDMLPNSTER	E[+28]STGAQVQVAGDMLPNSTER	R	A	99.700000	76.300000	53.700000	70.200000	Dimethyl (+28)	2117.010000	2.000000	-0.000620	-0.290000	125.000000	144.000000	NaN	1.339333	NaN	NaN	NaN	1.522050	NaN	NaN	NaN	NaN	1.943128	NaN	NaN	NaN	2.275282	NaN	NaN	NaN	NaN	1.943128	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum71323 scans:46870,	ESWLLPGSNDLLLEVGPR	E[+28]SWLLPGSNDLLLEVGPR	R	L	98.700000	42.100000	53.700000	29.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2032.080000	3.000000	-0.004700	-2.300000	76.000000	93.000000	0.580600	0.273500	0.471100	0.308750	1.287850	2.786850	NaN	NaN	NaN	0.729672	0.396799	0.819162	0.359168	1.748727	4.166006	NaN	NaN	NaN	0.544420	1.072763	0.208801	0.357952	0.231334	0.382065	0.099327	0.149537	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum71319 scans:46862,	ESWLLPGSNDLLLEVGPR	E[+28]SWLLPGSNDLLLEVGPR	R	L	99.400000	64.500000	53.900000	43.300000	Dimethyl (+28), Label:13C(6) (+6)	2028.100000	2.000000	0.000089	0.044000	76.000000	93.000000	0.580600	0.273500	0.471100	0.308750	1.287850	2.786850	NaN	NaN	NaN	0.729672	0.396799	0.819162	0.359168	1.748727	4.166006	NaN	NaN	NaN	0.544420	1.072763	0.208801	0.357952	0.231261	0.381947	0.099285	0.149440	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum71322 scans:46867,	ESWLLPGSNDLLLEVGPR	E[+28]SWLLPGSNDLLLEVGPR	R	L	99.700000	45.500000	53.600000	30.400000	Dimethyl (+28)	2022.080000	3.000000	-0.000740	-0.360000	76.000000	93.000000	0.580600	0.273500	0.471100	0.308750	1.287850	2.786850	NaN	NaN	NaN	0.729672	0.396799	0.819162	0.359168	1.748727	4.166006	NaN	NaN	NaN	0.544420	1.072763	0.208801	0.357952	0.230745	0.381830	0.098566	0.149344	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Eukaryotic translation initiation factor 3 subunit G OS=Homo sapiens GN=EIF3G PE=1 SV=2	EIF3G_HUMAN	EIF3G_HUMAN	Eukaryotic translation initiation factor 3 subunit G OS=Homo sapiens GN=EIF3G PE=1 SV=2	99.900000	0.013200	35593.900000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction2A.22824.22824.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22824"	ETDLQELFR	E[+28]TDLQELFR	R	P	99.200000	59.300000	52.100000	35.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1187.610000	2.000000	-0.000690	-0.580000	252.000000	260.000000	0.988667	6.608267	3.721367	6.001350	1.322100	0.689200	NaN	NaN	NaN	1.242512	9.587388	6.470817	6.981358	1.795234	1.030271	NaN	NaN	NaN	4.111935	5.691311	0.387871	0.382158	0.428498	0.407525	0.098524	0.148959	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit G OS=Homo sapiens GN=EIF3G PE=1 SV=2	tr|K7ENA8|K7ENA8_HUMAN	K7ENA8_HUMAN	Eukaryotic translation initiation factor 3 subunit G (Fragment) OS=Homo sapiens GN=EIF3G PE=1 SV=1	100.000000	0.003950	0.000000	2.000000	3.000000	3.000000	Spectrum21115 scans:22821,	ETDLQELFR	E[+28]TDLQELFR	R	P	98.500000	49.700000	48.300000	15.400000	Dimethyl (+28)	1177.600000	2.000000	0.000058	0.050000	0.000000	0.000000	0.988667	6.608267	3.721367	6.001350	1.322100	0.689200	NaN	NaN	NaN	1.242512	9.587388	6.470817	6.981358	1.795234	1.030271	NaN	NaN	NaN	4.111935	5.691311	0.387871	0.382158	0.428362	0.406775	0.098482	0.148863	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum47159 scans:18305,	ETGVDLTKDNMALQR	E[+28]TGVDLTKDNMALQR	R	V	99.700000	45.000000	52.600000	36.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1755.940000	3.000000	-0.000940	-0.540000	293.000000	307.000000	NaN	1.708367	3.991367	4.209150	0.986750	0.300000	NaN	NaN	NaN	NaN	2.478528	6.940300	4.896496	1.339874	0.448464	NaN	NaN	NaN	4.896496	1.909201	NaN	0.184496	NaN	0.196321	1.000000	0.148767	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Elongation factor G, mitochondrial OS=Homo sapiens GN=GFM1	sp|Q96RP9-2|EFGM_HUMAN	EFGM_HUMAN	Isoform 2 of Elongation factor G, mitochondrial OS=Homo sapiens GN=GFM1	100.000000	0.001320	85853.400000	1.000000	1.000000	1.000000	Spectrum61453 scans:35085,	ETITAPVPFDFTH	E[+28]TITAPVPFDFTH	R	K	99.700000	68.100000	49.300000	62.100000	Dimethyl (+28)	1501.740000	2.000000	-0.000500	-0.330000	546.000000	558.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.034200	64268.600000	8.000000	18.000000	26.000000	Spectrum13801 scans:2096,	ETNEPVKTK	E[+28]TNEPVKTK	R	T	99.100000	35.500000	49.300000	20.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1144.670000	3.000000	-0.001400	-1.300000	241.000000	249.000000	4.221767	1.796567	0.677000	2.790800	NaN	1.841950	NaN	NaN	NaN	5.305727	2.606490	1.177187	3.246532	NaN	2.753494	NaN	NaN	NaN	4.276129	2.606490	0.150421	NaN	0.165807	NaN	0.098064	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.034200	64268.600000	8.000000	18.000000	26.000000	Spectrum13799 scans:2090,	ETNEPVKTK	E[+28]TNEPVKTK	R	T	99.300000	34.200000	48.600000	26.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1136.690000	3.000000	-0.000440	-0.390000	241.000000	249.000000	4.221767	1.796567	0.677000	2.790800	NaN	1.841950	NaN	NaN	NaN	5.305727	2.606490	1.177187	3.246532	NaN	2.753494	NaN	NaN	NaN	4.276129	2.606490	0.150421	NaN	0.165754	NaN	0.098023	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.034200	64268.600000	8.000000	18.000000	26.000000	Spectrum13720 scans:1896,	ETNEPVKTKTR	E[+28]TNEPVKTKTR	R	T	99.700000	39.300000	49.200000	30.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1399.860000	3.000000	0.000077	0.055000	241.000000	251.000000	63.987300	37.097567	1.259800	NaN	NaN	NaN	NaN	NaN	NaN	80.416363	53.821791	2.190576	NaN	NaN	NaN	NaN	NaN	NaN	80.416363	53.821791	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Protein phosphatase 2A activator, regulatory subunit 4 (Fragment) OS=Homo sapiens GN=PPP2R4 PE=2 SV=1	Q5T948_HUMAN	Q5T948_HUMAN	Protein phosphatase 2A activator, regulatory subunit 4 (Fragment) OS=Homo sapiens GN=PPP2R4 PE=2 SV=1	97.400000	0.002880	28562.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.5755.5755.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=5755"	ETPPVDQPSR	E[+28]TPPVDQPSR	D	F	99.700000	60.400000	51.100000	35.100000	Dimethyl (+28)	1152.580000	2.000000	-0.001100	-0.960000	125.000000	134.000000	0.985767	0.420867	0.447533	NaN	0.382650	NaN	NaN	38.242086	NaN	1.238867	0.610601	0.778184	NaN	0.519587	NaN	NaN	16.286941	NaN	1.238867	5.805710	NaN	0.359454	NaN	0.381672	1.000000	0.010111	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Annexin A5 OS=Homo sapiens GN=ANXA5 PE=1 SV=2	ANXA5_HUMAN	ANXA5_HUMAN	Annexin A5 OS=Homo sapiens GN=ANXA5 PE=1 SV=2	100.000000	0.008640	35920.600000	3.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.46760.46760.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46760"	ETSGNLEQLLLAVVK	E[+28]TSGNLEQLLLAVVK	R	S	99.700000	93.700000	56.700000	86.100000	Dimethyl (+28), Dimethyl (+28)	1668.970000	2.000000	0.001500	0.890000	228.000000	242.000000	NaN	NaN	0.470700	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.818466	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum47673 scans:18890,	ETVSEESNVL	E[+28]TVSEESNVL	R	C	99.700000	61.200000	46.200000	45.700000	Dimethyl (+28)	1133.540000	2.000000	-0.000280	-0.250000	581.000000	590.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum58910 scans:31935,	ETVSEESNVLCL	E[+28]TVSEESNVLC[+57]L	R	S	99.700000	65.200000	46.500000	45.100000	Dimethyl (+28), Carbamidomethyl (+57)	1406.660000	2.000000	0.000310	0.220000	581.000000	592.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum50824 scans:22484,	ETVSEESNVLCLSKSPN	E[+28]TVSEESNVLC[+57]LSKSPN	R	K	99.700000	121.000000	51.300000	113.000000	Dimethyl (+28), Carbamidomethyl (+57), Dimethyl:2H(4) (+32)	1951.970000	2.000000	-0.002200	-1.100000	581.000000	597.000000	8.238000	3.761300	0.467100	0.163550	0.670250	14.377850	NaN	NaN	NaN	10.353148	5.456959	0.812207	0.190257	0.910109	21.493161	NaN	NaN	NaN	5.271703	3.183534	0.487889	0.394793	0.531213	0.418683	0.096389	0.147911	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.083300	95322.100000	11.000000	24.000000	36.000000	Nsco_Tails_biological_replicate_3_fraction6A.22558.22558.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22558"	ETVSEESNVLCLSKSPN	E[+28]TVSEESNVLC[+57]LSKSPN	R	K	99.700000	112.000000	54.300000	104.000000	Dimethyl (+28), Carbamidomethyl (+57), Dimethyl (+28)	1947.940000	2.000000	-0.001700	-0.870000	581.000000	597.000000	8.238000	3.761300	0.467100	0.163550	0.670250	14.377850	NaN	NaN	NaN	10.353148	5.456959	0.812207	0.190257	0.910109	21.493161	NaN	NaN	NaN	5.271703	3.183534	0.487889	0.394793	0.530880	0.418428	0.094000	0.147817	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.083300	95322.100000	11.000000	24.000000	36.000000	Nsco_Tails_biological_replicate_3_fraction6A.22634.22634.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22634"	ETVSEESNVLCLSKSPN	E[+28]TVSEESNVLC[+57]LSKSPN	R	K	99.700000	117.000000	54.900000	111.000000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36)	1955.960000	2.000000	-0.000620	-0.320000	581.000000	597.000000	8.238000	3.761300	0.467100	0.163550	0.670250	14.377850	NaN	NaN	NaN	10.353148	5.456959	0.812207	0.190257	0.910109	21.493161	NaN	NaN	NaN	5.271703	3.183534	0.487889	0.394793	0.530713	0.418300	0.093962	0.147722	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum45460 scans:16324,	ETVSEESNVLCLSKSPNKH	E[+28]TVSEESNVLC[+57]LSKSPNKH	R	N	98.800000	29.000000	54.300000	19.000000	Dimethyl (+28), Carbamidomethyl (+57), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	2249.180000	4.000000	0.000990	0.440000	581.000000	599.000000	19.288733	15.628867	1.150167	4.889450	117.746650	13.350850	NaN	NaN	NaN	24.241213	22.674630	1.999942	5.687887	159.884106	19.957919	NaN	NaN	NaN	14.964550	91.279368	0.170770	0.000000	0.185701	0.000000	0.093506	0.147440	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum45466 scans:16330,	ETVSEESNVLCLSKSPNKH	E[+28]TVSEESNVLC[+57]LSKSPNKH	R	N	99.100000	37.700000	53.600000	33.000000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	2257.150000	4.000000	-0.005500	-2.400000	581.000000	599.000000	19.288733	15.628867	1.150167	4.889450	117.746650	13.350850	NaN	NaN	NaN	24.241213	22.674630	1.999942	5.687887	159.884106	19.957919	NaN	NaN	NaN	14.964550	91.279368	0.170770	0.000000	0.185642	0.000000	0.093393	0.147346	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	TERA_HUMAN	TERA_HUMAN	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	100.000000	0.009330	89306.800000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.63285.63285.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=63285"	ETVVEVPQVTWEDIGGLEDVKR	E[+28]TVVEVPQVTWEDIGGLEDVKR	R	E	98.800000	63.100000	60.500000	63.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2571.350000	3.000000	-0.002600	-1.000000	466.000000	487.000000	11.393900	4.349867	0.587567	0.242000	NaN	NaN	NaN	NaN	NaN	14.319341	6.310862	1.021677	0.281518	NaN	NaN	NaN	NaN	NaN	7.300430	6.310862	0.482083	NaN	0.522758	NaN	0.093317	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Homo sapiens GN=PLCG1	sp|P19174-2|PLCG1_HUMAN	PLCG1_HUMAN	Isoform 2 of 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Homo sapiens GN=PLCG1	100.000000	0.001320	148646.300000	1.000000	1.000000	1.000000	Spectrum33702 scans:2806,	EVAQTADAR	E[+28]VAQTADAR	R	L	99.700000	62.000000	46.800000	38.800000	Dimethyl (+28)	987.500000	2.000000	-0.000480	-0.490000	928.000000	936.000000	0.258733	0.238967	3.147467	NaN	NaN	NaN	NaN	NaN	NaN	0.325164	0.346697	5.472903	NaN	NaN	NaN	NaN	NaN	NaN	0.325164	0.346697	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=4 SV=1	SNUT2_HUMAN	SNUT2_HUMAN	U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2	99.900000	0.001320	65364.400000	1.000000	1.000000	1.000000	Spectrum1061 scans:11899,	EVDEDSEPER	E[+28]VDEDSEPER	R	E	98.700000	47.500000	41.500000	36.700000	Dimethyl (+28), Label:13C(6) (+6)	1237.540000	2.000000	-0.002300	-1.800000	77.000000	86.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	DHSO_HUMAN	DHSO_HUMAN	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	100.000000	0.018400	38306.600000	4.000000	9.000000	14.000000	Spectrum49537 scans:21023,	EVDIKGVFR	NaN	R	Y	99.700000	43.800000	48.900000	14.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1135.670000	3.000000	-0.000790	-0.700000	291.000000	299.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Nardilysin OS=Homo sapiens GN=NRD1 PE=3 SV=1	B1AKJ5_HUMAN	B1AKJ5_HUMAN	Nardilysin OS=Homo sapiens GN=NRD1 PE=3 SV=1	99.900000	0.005760	139399.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.17639.17639.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17639"	EVEAVDSEYQLAR	E[+28]VEAVDSEYQLAR	R	P	99.700000	78.500000	52.100000	57.600000	Dimethyl (+28)	1535.740000	2.000000	-0.004000	-2.600000	375.000000	387.000000	0.725300	0.348700	0.491867	0.085850	0.235250	4.365900	NaN	NaN	NaN	0.911524	0.505900	0.855272	0.099869	0.319438	6.526497	NaN	NaN	NaN	0.505697	0.412669	0.430527	0.141452	0.465689	0.148649	0.092719	0.146878	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Nardilysin OS=Homo sapiens GN=NRD1 PE=3 SV=1	sp|O43847|NRDC_HUMAN	NRDC_HUMAN	Nardilysin OS=Homo sapiens GN=NRD1 PE=1 SV=2	99.900000	0.005760	131557.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.17628.17628.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17628"	EVEAVDSEYQLAR	E[+28]VEAVDSEYQLAR	R	P	99.700000	78.200000	52.300000	57.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1545.750000	2.000000	-0.005200	-3.300000	306.000000	318.000000	0.725300	0.348700	0.491867	0.085850	0.235250	4.365900	NaN	NaN	NaN	0.911524	0.505900	0.855272	0.099869	0.319438	6.526497	NaN	NaN	NaN	0.505697	0.412669	0.430527	0.141452	0.465544	0.148604	0.092682	0.146506	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	NUCL_HUMAN	NUCL_HUMAN	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	100.000000	0.007900	76597.900000	6.000000	6.000000	6.000000	Spectrum8465 scans:31532,	EVFEDAAEIR	E[+28]VFEDAAEIR	K	L	99.700000	83.100000	47.600000	60.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1215.600000	2.000000	-0.001200	-0.980000	411.000000	420.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.107000	57471.900000	12.000000	23.000000	37.000000	Nsco_Tails_biological_replicate1_apoptosis.43265.43265.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43265"	EVGDGTTSVTVLAAELLR	E[+28]VGDGTTSVTVLAAELLR	D	E	99.700000	123.000000	57.700000	114.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1868.010000	2.000000	0.000700	0.370000	94.000000	111.000000	0.642633	0.251300	0.398300	0.761050	0.465900	0.616150	NaN	NaN	NaN	0.807633	0.364590	0.692575	0.885328	0.632630	0.921070	NaN	NaN	NaN	0.846480	0.498610	0.029196	0.167164	0.031473	0.175509	0.092533	0.146321	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.123000	57471.900000	10.000000	25.000000	49.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.44414.44414.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44414"	EVGDGTTSVTVLAAELLR	E[+28]VGDGTTSVTVLAAELLR	D	E	99.700000	93.300000	57.600000	82.600000	Dimethyl (+28)	1858.000000	2.000000	-0.001800	-0.980000	94.000000	111.000000	0.642633	0.251300	0.398300	0.761050	0.465900	0.616150	NaN	NaN	NaN	0.807633	0.364590	0.692575	0.885328	0.632630	0.921070	NaN	NaN	NaN	0.846480	0.498610	0.029196	0.167164	0.031278	0.175456	0.091220	0.146228	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.123000	57471.900000	10.000000	25.000000	49.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.44372.44372.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44372"	EVGDGTTSVTVLAAELLR	E[+28]VGDGTTSVTVLAAELLR	D	E	99.700000	128.000000	57.900000	119.000000	Dimethyl (+28), Label:13C(6) (+6)	1864.030000	2.000000	0.000350	0.190000	94.000000	111.000000	0.642633	0.251300	0.398300	0.761050	0.465900	0.616150	NaN	NaN	NaN	0.807633	0.364590	0.692575	0.885328	0.632630	0.921070	NaN	NaN	NaN	0.846480	0.498610	0.029196	0.167164	0.031269	0.175403	0.087329	0.146136	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	C1QBP_HUMAN	C1QBP_HUMAN	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	100.000000	0.010000	31344.600000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.28948.28948.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28948"	EVGQEDEAESDIFSIR	E[+28]VGQEDEAESDIFSIR	D	E	99.700000	113.000000	50.100000	104.000000	Dimethyl (+28)	1850.850000	2.000000	-0.008100	-4.400000	192.000000	207.000000	0.348367	0.413533	1.263167	1.281000	1.029850	0.801600	NaN	NaN	NaN	0.437812	0.599961	2.196430	1.490185	1.398398	1.198296	NaN	NaN	NaN	0.963998	0.999180	0.318082	0.241989	0.340242	0.253763	0.087263	0.146044	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	C1QBP_HUMAN	C1QBP_HUMAN	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	100.000000	0.017900	31344.600000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.25090.25090.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25090"	EVGQEDEAESDIFSIR	E[+28]VGQEDEAESDIFSIR	D	E	99.700000	107.000000	50.800000	88.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1860.860000	2.000000	-0.004100	-2.200000	192.000000	207.000000	0.348367	0.413533	1.263167	1.281000	1.029850	0.801600	NaN	NaN	NaN	0.437812	0.599961	2.196430	1.490185	1.398398	1.198296	NaN	NaN	NaN	0.963998	0.999180	0.318082	0.241989	0.339927	0.253227	0.086222	0.145676	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	C1QBP_HUMAN	C1QBP_HUMAN	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	100.000000	0.017900	31344.600000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.25098.25098.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25098"	EVGQEDEAESDIFSIR	E[+28]VGQEDEAESDIFSIR	D	E	99.700000	120.000000	51.900000	111.000000	Dimethyl (+28), Label:13C(6) (+6)	1856.870000	2.000000	-0.003000	-1.600000	192.000000	207.000000	0.348367	0.413533	1.263167	1.281000	1.029850	0.801600	NaN	NaN	NaN	0.437812	0.599961	2.196430	1.490185	1.398398	1.198296	NaN	NaN	NaN	0.963998	0.999180	0.318082	0.241989	0.339823	0.252846	0.085647	0.145493	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1	PRS10_HUMAN	PRS10_HUMAN	26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1	100.000000	0.014400	44156.900000	2.000000	3.000000	5.000000	Nsco_Tails_biological_replicate1_apoptosis.38718.38718.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38718"	EVIELPLTNPELFQR	E[+28]VIELPLTNPELFQR	R	V	99.700000	76.000000	57.700000	52.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1835.010000	2.000000	-0.001600	-0.870000	147.000000	161.000000	0.547300	0.132600	0.236300	NaN	0.273350	0.862400	NaN	NaN	NaN	0.687822	0.192378	0.410885	NaN	0.371173	1.289185	NaN	NaN	NaN	0.687822	0.281775	NaN	0.195581	NaN	0.204295	1.000000	0.145401	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1	PRS10_HUMAN	PRS10_HUMAN	26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1	100.000000	0.014400	44156.900000	2.000000	3.000000	5.000000	Nsco_Tails_biological_replicate1_apoptosis.38440.38440.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38440"	EVIELPLTNPELFQR	E[+28]VIELPLTNPELFQR	R	V	99.700000	102.000000	57.600000	71.700000	Dimethyl (+28)	1825.000000	2.000000	-0.001500	-0.840000	147.000000	161.000000	0.547300	0.132600	0.236300	NaN	0.273350	0.862400	NaN	NaN	NaN	0.687822	0.192378	0.410885	NaN	0.371173	1.289185	NaN	NaN	NaN	0.687822	0.281775	NaN	0.195581	NaN	0.204111	1.000000	0.145219	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3	ARP3_HUMAN	ARP3_HUMAN	Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3	99.800000	0.004720	47353.800000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.31819.31819.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31819"	EVIQNCPIDVR	E[+28]VIQNC[+57]PIDVR	D	R	99.700000	73.800000	53.500000	50.700000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1379.710000	2.000000	-0.005400	-3.900000	302.000000	312.000000	0.498133	0.208100	0.426700	0.710250	0.355150	0.500750	NaN	NaN	NaN	0.626032	0.301915	0.741958	0.826232	0.482246	0.748561	NaN	NaN	NaN	0.726132	0.392080	0.087211	0.143899	0.093086	0.150130	0.085300	0.145128	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3	ARP3_HUMAN	ARP3_HUMAN	Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3	98.900000	0.005010	47353.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.15275.15275.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15275"	EVIQNCPIDVR	E[+28]VIQNC[+57]PIDVR	D	R	99.700000	75.300000	53.600000	59.100000	Dimethyl (+28), Carbamidomethyl (+57)	1369.710000	2.000000	0.002900	2.100000	302.000000	312.000000	0.498133	0.208100	0.426700	0.710250	0.355150	0.500750	NaN	NaN	NaN	0.626032	0.301915	0.741958	0.826232	0.482246	0.748561	NaN	NaN	NaN	0.726132	0.392080	0.087211	0.143899	0.093057	0.150084	0.085206	0.145037	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum60986 scans:34513,	EVKSTNGDTFLGGEDFDQALLR	E[+28]VKSTNGDTFLGGEDFDQALLR	F	H	99.700000	77.800000	53.500000	54.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2485.240000	3.000000	-0.005100	-2.000000	263.000000	284.000000	0.888900	0.195900	0.338667	18.088700	NaN	NaN	NaN	NaN	NaN	1.117130	0.284215	0.588883	21.042548	NaN	NaN	NaN	NaN	NaN	11.079839	0.284215	0.429175	NaN	0.457804	NaN	0.084274	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum60962 scans:34484,	EVKSTNGDTFLGGEDFDQALLR	E[+28]VKSTNGDTFLGGEDFDQALLR	F	H	99.700000	88.200000	54.400000	71.100000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2477.260000	3.000000	-0.005200	-2.100000	263.000000	284.000000	0.888900	0.195900	0.338667	18.088700	NaN	NaN	NaN	NaN	NaN	1.117130	0.284215	0.588883	21.042548	NaN	NaN	NaN	NaN	NaN	11.079839	0.284215	0.429175	NaN	0.457664	NaN	0.084244	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4	PSB4_HUMAN	PSB4_HUMAN	Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4	98.800000	0.002630	29187.000000	1.000000	2.000000	2.000000	Spectrum18523 scans:10645,	EVLEKQPVLSQTEAR	E[+28]VLEKQPVLSQTEAR	R	D	99.700000	51.400000	52.900000	37.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1800.010000	3.000000	-0.000190	-0.110000	197.000000	211.000000	13.769967	6.909200	0.464700	0.064850	NaN	8.633650	NaN	NaN	NaN	17.305475	10.023987	0.808033	0.075440	NaN	12.906271	NaN	NaN	NaN	8.690458	10.023987	0.495197	NaN	0.527744	NaN	0.084060	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Amidophosphoribosyltransferase OS=Homo sapiens GN=PPAT PE=1 SV=1	PUR1_HUMAN	PUR1_HUMAN	Amidophosphoribosyltransferase OS=Homo sapiens GN=PPAT PE=1 SV=1	100.000000	0.003950	57381.300000	2.000000	3.000000	3.000000	Spectrum55783 scans:28151,	EVLPGEIVEISR	E[+28]VLPGEIVEISR	R	H	99.000000	55.900000	50.800000	32.500000	Dimethyl (+28)	1367.760000	2.000000	-0.001900	-1.400000	249.000000	260.000000	4.836733	2.431300	0.533200	0.136900	0.876550	7.498200	NaN	NaN	NaN	6.078589	3.527372	0.927143	0.159255	1.190237	11.208909	NaN	NaN	NaN	3.118922	2.358805	0.483325	0.292824	0.514933	0.305043	0.084030	0.144223	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	ADA_HUMAN	ADA_HUMAN	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	100.000000	0.009440	40747.100000	4.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.43792.43792.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43792"	EVVALVGQGLQEGER	E[+28]VVALVGQGLQEGER	D	D	99.700000	89.700000	56.100000	63.400000	Dimethyl (+28)	1610.860000	2.000000	-0.002300	-1.400000	128.000000	142.000000	0.635300	0.344567	0.540200	40.130700	3.849150	NaN	NaN	NaN	NaN	0.798416	0.499903	0.939315	46.683961	5.226628	NaN	NaN	NaN	NaN	23.741189	2.863266	0.449279	0.439295	0.478220	0.457215	0.083847	0.144133	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	ADA_HUMAN	ADA_HUMAN	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	100.000000	0.007000	40747.100000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.42565.42565.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42565"	EVVALVGQGLQEGER	E[+28]VVALVGQGLQEGER	D	D	99.700000	73.500000	56.100000	58.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1620.870000	2.000000	-0.005800	-3.600000	128.000000	142.000000	0.635300	0.344567	0.540200	40.130700	3.849150	NaN	NaN	NaN	NaN	0.798416	0.499903	0.939315	46.683961	5.226628	NaN	NaN	NaN	NaN	23.741189	2.863266	0.449279	0.439295	0.478073	0.456803	0.083816	0.144043	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3	PRS7_HUMAN	PRS7_HUMAN	26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3	100.000000	0.007900	48617.600000	3.000000	6.000000	6.000000	Spectrum19923 scans:14094,	EVVETPLLHPER	E[+28]VVETPLLHPER	R	F	99.700000	59.500000	51.200000	43.800000	Dimethyl (+28)	1445.790000	3.000000	0.000240	0.170000	189.000000	200.000000	0.629667	0.239833	0.383200	1.985350	0.805550	0.383100	NaN	NaN	NaN	0.791337	0.347954	0.666319	2.309554	1.093829	0.572689	NaN	NaN	NaN	1.550445	0.720891	0.289852	0.303931	0.308334	0.315950	0.083124	0.143954	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3	PRS7_HUMAN	PRS7_HUMAN	26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3	100.000000	0.002330	48617.600000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.33048.33048.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33048"	EVVETPLLHPER	E[+28]VVETPLLHPER	R	F	99.600000	69.000000	55.500000	57.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1455.800000	3.000000	0.000420	0.290000	189.000000	200.000000	0.629667	0.239833	0.383200	1.985350	0.805550	0.383100	NaN	NaN	NaN	0.791337	0.347954	0.666319	2.309554	1.093829	0.572689	NaN	NaN	NaN	1.550445	0.720891	0.289852	0.303931	0.308051	0.315760	0.083094	0.143864	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4	tr|X1WI28|X1WI28_HUMAN	X1WI28_HUMAN	60S ribosomal protein L10 (Fragment) OS=Homo sapiens GN=RPL10 PE=1 SV=1	97.700000	0.002360	0.000000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.42964.42964.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42964"	EYEQLSSEALEAAR	E[+28]YEQLSSEALEAAR	D	I	99.700000	62.400000	52.400000	50.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1632.790000	2.000000	-0.001600	-0.970000	0.000000	0.000000	3.756833	36.827433	5.514867	0.930050	0.432750	0.464950	NaN	NaN	NaN	4.721419	53.429877	9.589405	1.081925	0.587616	0.695044	NaN	NaN	NaN	2.901672	27.008747	0.356593	0.462634	0.378866	0.480497	0.083004	0.143775	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4	RL10_HUMAN	RL10_HUMAN	60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4	98.900000	0.004480	24586.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.19364.19364.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19364"	EYEQLSSEALEAAR	E[+28]YEQLSSEALEAAR	D	I	99.700000	72.300000	52.600000	58.300000	Dimethyl (+28)	1622.790000	2.000000	0.006700	4.100000	56.000000	69.000000	3.756833	36.827433	5.514867	0.930050	0.432750	0.464950	NaN	NaN	NaN	4.721419	53.429877	9.589405	1.081925	0.587616	0.695044	NaN	NaN	NaN	2.901672	27.008747	0.356593	0.462634	0.378750	0.479922	0.082975	0.143685	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	STE20/SPS1-related proline-alanine-rich protein kinase OS=Homo sapiens GN=STK39 PE=1 SV=3	STK39_HUMAN	STK39_HUMAN	STE20/SPS1-related proline-alanine-rich protein kinase OS=Homo sapiens GN=STK39 PE=1 SV=3	98.800000	0.002630	59456.700000	1.000000	1.000000	2.000000	Spectrum63901 scans:37951,	EYLIEKLLTR	E[+28]YLIEKLLTR	R	T	99.700000	41.200000	49.200000	21.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1350.820000	3.000000	-0.000490	-0.370000	344.000000	353.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	DYHC1_HUMAN	DYHC1_HUMAN	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	100.000000	0.009220	532387.600000	5.000000	7.000000	7.000000	Spectrum18739 scans:11144,	EYQTQLIQR	E[+28]YQTQLIQR	R	V	99.400000	59.100000	49.400000	36.700000	Dimethyl (+28)	1205.640000	2.000000	0.000400	0.330000	603.000000	611.000000	0.650333	0.469067	9.617800	3.207000	0.231900	2.423200	NaN	NaN	NaN	0.817310	0.680530	16.723700	3.730697	0.314889	3.622393	NaN	NaN	NaN	2.274003	0.497710	0.362700	0.224105	0.384766	0.232064	0.082796	0.143418	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3	PRS7_HUMAN	PRS7_HUMAN	26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3	100.000000	0.039500	48617.600000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.6694.6694.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6694"	FDDGAGGDNEVQR	F[+28]DDGAGGDNEVQR	R	T	99.700000	76.000000	45.100000	55.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1416.610000	2.000000	-0.001900	-1.300000	285.000000	297.000000	0.644467	0.076167	0.108800	2.733800	20.555950	6.148250	NaN	NaN	NaN	0.809937	0.110504	0.189184	3.180224	27.912214	9.190896	NaN	NaN	NaN	1.995080	14.011359	0.341241	0.492965	0.361891	0.510015	0.082767	0.143329	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3	PRS7_HUMAN	PRS7_HUMAN	26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3	100.000000	0.007900	48617.600000	3.000000	6.000000	6.000000	Spectrum16622 scans:6702,	FDDGAGGDNEVQR	F[+28]DDGAGGDNEVQR	R	T	99.700000	72.800000	41.700000	58.100000	Dimethyl (+28)	1406.610000	2.000000	0.000440	0.310000	285.000000	297.000000	0.644467	0.076167	0.108800	2.733800	20.555950	6.148250	NaN	NaN	NaN	0.809937	0.110504	0.189184	3.180224	27.912214	9.190896	NaN	NaN	NaN	1.995080	14.011359	0.341241	0.492965	0.361670	0.509863	0.081859	0.143240	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3	PRS7_HUMAN	PRS7_HUMAN	26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3	100.000000	0.007900	48617.600000	3.000000	6.000000	6.000000	Spectrum16652 scans:6750,	FDDGAGGDNEVQR	F[+28]DDGAGGDNEVQR	R	T	99.700000	78.500000	43.200000	57.200000	Dimethyl (+28), Label:13C(6) (+6)	1412.630000	2.000000	0.000810	0.570000	285.000000	297.000000	0.644467	0.076167	0.108800	2.733800	20.555950	6.148250	NaN	NaN	NaN	0.809937	0.110504	0.189184	3.180224	27.912214	9.190896	NaN	NaN	NaN	1.995080	14.011359	0.341241	0.492965	0.361559	0.508801	0.081830	0.143063	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	sp|O00410|IPO5_HUMAN	IPO5_HUMAN	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	100.000000	0.010000	123614.200000	4.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.16226.16226.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16226"	FDSNAVAGESALDR	F[+28]DSNAVAGESALDR	D	M	99.700000	69.600000	51.100000	63.100000	Dimethyl (+28)	1478.710000	2.000000	0.005300	3.600000	332.000000	345.000000	0.109200	0.041533	0.553033	0.365900	0.199400	0.581950	NaN	NaN	NaN	0.137238	0.060257	0.961630	0.425651	0.270758	0.869945	NaN	NaN	NaN	0.281444	0.165508	0.301441	0.360592	0.319097	0.372065	0.081628	0.142975	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	FKBP4_HUMAN	FKBP4_HUMAN	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	100.000000	0.015800	51787.900000	5.000000	9.000000	12.000000	Spectrum67829 scans:42402,	FEIGEGENLDLPY	F[+28]EIGEGENLDLPY	R	G	99.700000	76.800000	47.200000	49.500000	Dimethyl (+28)	1522.720000	2.000000	-0.001500	-0.990000	190.000000	202.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	FKBP4_HUMAN	FKBP4_HUMAN	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	100.000000	0.015800	51787.900000	5.000000	9.000000	12.000000	Spectrum64793 scans:38947,	FEIGEGENLDLPYGLER	F[+28]EIGEGENLDLPYGLER	R	A	99.700000	92.400000	50.400000	65.400000	Dimethyl (+28)	1977.960000	2.000000	-0.007400	-3.700000	190.000000	206.000000	0.781967	4.269833	4.646867	NaN	4.144450	NaN	NaN	NaN	NaN	0.982741	6.194748	8.080102	NaN	5.627605	NaN	NaN	NaN	NaN	0.982741	5.911177	NaN	0.030517	NaN	0.031413	1.000000	0.142798	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	FKBP4_HUMAN	FKBP4_HUMAN	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	100.000000	0.015800	51787.900000	5.000000	9.000000	12.000000	Spectrum64915 scans:39082,	FEIGEGENLDLPYGLER	F[+28]EIGEGENLDLPYGLER	R	A	99.700000	81.100000	51.500000	71.800000	Dimethyl (+28), Label:13C(6) (+6)	1983.990000	2.000000	-0.002400	-1.200000	190.000000	206.000000	0.781967	4.269833	4.646867	NaN	4.144450	NaN	NaN	NaN	NaN	0.982741	6.194748	8.080102	NaN	5.627605	NaN	NaN	NaN	NaN	0.982741	5.911177	NaN	0.030517	NaN	0.031403	1.000000	0.142710	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	FKBP4_HUMAN	FKBP4_HUMAN	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	100.000000	0.016200	51787.900000	2.000000	4.000000	7.000000	Nsco_Tails_biological_replicate_3_fraction6A.38935.38935.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38935"	FEIGEGENLDLPYGLER	F[+28]EIGEGENLDLPYGLER	R	A	98.500000	54.900000	54.900000	51.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1987.970000	2.000000	-0.004400	-2.200000	190.000000	206.000000	0.781967	4.269833	4.646867	NaN	4.144450	NaN	NaN	NaN	NaN	0.982741	6.194748	8.080102	NaN	5.627605	NaN	NaN	NaN	NaN	0.982741	5.911177	NaN	0.030517	NaN	0.031394	1.000000	0.142534	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLG2	sp|Q96I99|SUCB2_HUMAN	SUCB2_HUMAN	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLG2 PE=1 SV=2	100.000000	0.002630	46493.700000	2.000000	2.000000	2.000000	Spectrum56569 scans:29087,	FFVADTANEALEAAKR	F[+28]FVADTANEALEAAKR	R	L	99.700000	88.400000	52.900000	80.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1817.990000	3.000000	0.001100	0.590000	59.000000	74.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2	LA_HUMAN	LA_HUMAN	Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2	100.000000	0.014500	46821.000000	4.000000	5.000000	11.000000	Spectrum30999 scans:18917,	FGDFNLPR	FGDFNLPR	Y	D	99.000000	65.500000	46.000000	37.100000		964.480000	2.000000	0.000500	0.520000	25.000000	32.000000	14.043100	22.490200	2.586033	0.349200	1.017300	1.358850	NaN	9.570143	NaN	17.648737	32.629171	4.496667	0.406224	1.381357	2.031318	NaN	4.075833	NaN	9.027480	12.695453	0.474153	0.180266	0.498277	0.185121	0.081312	0.009700	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.035600	26545.800000	9.000000	20.000000	27.000000	Spectrum57392 scans:30110,	FIDVGAGVIDEDYR	F[+28]IDVGAGVIDEDYR	H	G	98.900000	59.700000	49.600000	50.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1605.790000	2.000000	0.001700	1.000000	181.000000	194.000000	1.186467	2.067133	1.113300	4.346900	0.432200	0.100050	NaN	NaN	NaN	1.491098	2.999033	1.935837	5.056740	0.586869	0.149563	NaN	NaN	NaN	3.273919	1.792951	0.317451	0.376977	0.333502	0.387015	0.081170	0.142097	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.035600	26545.800000	9.000000	20.000000	27.000000	Spectrum57391 scans:30109,	FIDVGAGVIDEDYR	F[+28]IDVGAGVIDEDYR	H	G	98.900000	53.000000	49.200000	37.700000	Dimethyl (+28)	1595.780000	2.000000	-0.002300	-1.400000	181.000000	194.000000	1.186467	2.067133	1.113300	4.346900	0.432200	0.100050	NaN	NaN	NaN	1.491098	2.999033	1.935837	5.056740	0.586869	0.149563	NaN	NaN	NaN	3.273919	1.792951	0.317451	0.376977	0.333401	0.386101	0.081141	0.142009	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.035600	26545.800000	9.000000	20.000000	27.000000	Spectrum57401 scans:30120,	FIDVGAGVIDEDYR	F[+28]IDVGAGVIDEDYR	H	G	99.700000	70.500000	50.100000	58.400000	Dimethyl (+28), Label:13C(6) (+6)	1601.800000	2.000000	-0.000310	-0.190000	181.000000	194.000000	1.186467	2.067133	1.113300	4.346900	0.432200	0.100050	NaN	NaN	NaN	1.491098	2.999033	1.935837	5.056740	0.586869	0.149563	NaN	NaN	NaN	3.273919	1.792951	0.317451	0.376977	0.333300	0.385987	0.081113	0.141922	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	PGP_HUMAN	PGP_HUMAN	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	100.000000	0.018400	33988.600000	5.000000	9.000000	14.000000	Spectrum61327 scans:34942,	FIFDCVSQEYGINPER	F[+28]IFDC[+57]VSQEYGINPER	R	T	99.700000	80.500000	47.600000	66.200000	Dimethyl (+28), Carbamidomethyl (+57)	2000.930000	2.000000	-0.004600	-2.300000	239.000000	254.000000	19.058833	4.130967	0.500367	NaN	NaN	0.751250	NaN	NaN	NaN	23.952285	5.993278	0.870052	NaN	NaN	1.123029	NaN	NaN	NaN	23.952285	5.993278	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	PGP_HUMAN	PGP_HUMAN	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	100.000000	0.009250	33988.600000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction6A.34951.34951.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34951"	FIFDCVSQEYGINPER	F[+28]IFDC[+57]VSQEYGINPER	R	T	99.700000	78.500000	52.800000	77.300000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	2006.950000	2.000000	-0.003900	-2.000000	239.000000	254.000000	19.058833	4.130967	0.500367	NaN	NaN	0.751250	NaN	NaN	NaN	23.952285	5.993278	0.870052	NaN	NaN	1.123029	NaN	NaN	NaN	23.952285	5.993278	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1	CALR_HUMAN	CALR_HUMAN	Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1	100.000000	0.007900	48124.900000	3.000000	5.000000	6.000000	Spectrum31039 scans:19165,	FKEQFLDGDGWTSR	F[+28]KEQFLDGDGWTSR	Y	W	99.700000	45.500000	48.500000	29.800000	Dimethyl (+28)	1712.820000	3.000000	0.001200	0.670000	23.000000	36.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.017300	82573.600000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.19739.19739.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19739"	FLDSQNLSAYNTR	F[+28]LDSQNLSAYNTR	D	L	99.700000	62.000000	52.700000	57.800000	Dimethyl (+28)	1555.760000	2.000000	-0.003200	-2.100000	187.000000	199.000000	0.323867	0.414667	1.180233	0.664950	0.520150	0.750100	NaN	NaN	NaN	0.407021	0.601606	2.052223	0.773535	0.706294	1.121310	NaN	NaN	NaN	0.590278	0.653950	0.191638	0.050849	0.200962	0.051972	0.080352	0.141315	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA replication complex GINS protein SLD5 OS=Homo sapiens GN=GINS4 PE=4 SV=1	E5RFF9_HUMAN	E5RFF9_HUMAN	DNA replication complex GINS protein SLD5 OS=Homo sapiens GN=GINS4 PE=4 SV=1	100.000000	0.006590	22635.100000	2.000000	4.000000	5.000000	Spectrum65940 scans:40221,	FLGQDSDGGSEEVVLTPAELIER	F[+28]LGQDSDGGSEEVVLTPAELIER	D	L	99.700000	95.200000	53.800000	87.000000	Dimethyl (+28), Label:13C(6) (+6)	2494.250000	2.000000	-0.001800	-0.700000	7.000000	29.000000	NaN	NaN	NaN	0.671000	9.655650	25.794350	NaN	NaN	NaN	NaN	NaN	NaN	0.780573	13.111073	38.559459	NaN	NaN	NaN	0.780573	13.111073	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 SV=3	PFD3_HUMAN	PFD3_HUMAN	Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 SV=3	100.000000	0.002630	22640.800000	2.000000	2.000000	2.000000	Spectrum66661 scans:41061,	FLLADNLY	F[+28]LLADNLY	R	C	99.000000	53.200000	48.300000	23.400000	Dimethyl (+28)	995.530000	2.000000	0.000120	0.120000	105.000000	112.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.040800	82573.600000	11.000000	21.000000	31.000000	Spectrum73814 scans:52709,	FPEDGPELEEILTQLATADAR	F[+28]PEDGPELEEILTQLATADAR	R	F	99.700000	62.600000	53.000000	51.000000	Dimethyl (+28)	2342.170000	3.000000	0.006500	2.800000	704.000000	724.000000	0.583300	0.368500	0.631800	1.262050	22.277900	30.877050	NaN	NaN	NaN	0.733065	0.534626	1.098592	1.468140	30.250390	46.157486	NaN	NaN	NaN	1.100603	15.392508	0.205181	0.465997	0.214905	0.475871	0.080129	0.141057	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.040800	82573.600000	11.000000	21.000000	31.000000	Spectrum73816 scans:52711,	FPEDGPELEEILTQLATADAR	F[+28]PEDGPELEEILTQLATADAR	R	F	99.700000	56.800000	52.800000	38.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2352.170000	3.000000	-0.004400	-1.900000	704.000000	724.000000	0.583300	0.368500	0.631800	1.262050	22.277900	30.877050	NaN	NaN	NaN	0.733065	0.534626	1.098592	1.468140	30.250390	46.157486	NaN	NaN	NaN	1.100603	15.392508	0.205181	0.465997	0.214710	0.475731	0.080018	0.140971	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.040800	82573.600000	11.000000	21.000000	31.000000	Spectrum73774 scans:52535,	FPEDGPELEEILTQLATADAR	F[+28]PEDGPELEEILTQLATADAR	R	F	99.700000	74.600000	53.700000	57.500000	Dimethyl (+28), Label:13C(6) (+6)	2348.190000	3.000000	0.007000	3.000000	704.000000	724.000000	0.583300	0.368500	0.631800	1.262050	22.277900	30.877050	NaN	NaN	NaN	0.733065	0.534626	1.098592	1.468140	30.250390	46.157486	NaN	NaN	NaN	1.100603	15.392508	0.205181	0.465997	0.214387	0.475311	0.079469	0.140885	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Myosin regulatory light chain 12A OS=Homo sapiens GN=MYL12A PE=1 SV=2	tr|J3QRS3|J3QRS3_HUMAN	J3QRS3_HUMAN	Myosin regulatory light chain 12A OS=Homo sapiens GN=MYL12A PE=4 SV=1	100.000000	0.026300	0.000000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction2A.18450.18450.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18450"	FTDEEVDELYR	F[+28]TDEEVDELYR	R	E	99.700000	66.700000	48.300000	46.300000	Dimethyl (+28)	1442.660000	2.000000	-0.001500	-1.100000	0.000000	0.000000	NaN	NaN	5.510900	0.138500	1.941200	15.927750	NaN	NaN	NaN	NaN	NaN	9.582507	0.161117	2.635888	23.810075	NaN	NaN	NaN	0.161117	2.635888	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.011500	29487.900000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.36067.36067.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36067"	FTPGTFTNQIQAAFR	F[+28]TPGTFTNQIQAAFR	R	E	99.700000	64.900000	55.600000	59.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1735.890000	2.000000	-0.002400	-1.400000	103.000000	117.000000	0.566367	0.197567	0.351800	1.152950	4.227500	2.790700	NaN	NaN	NaN	0.711784	0.286633	0.611720	1.341224	5.740376	4.171762	NaN	NaN	NaN	1.026504	3.013505	0.189391	0.468238	0.197770	0.476897	0.078127	0.140628	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.007080	29487.900000	3.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.63699.63699.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=63699"	FTPGTFTNQIQAAFR	F[+28]TPGTFTNQIQAAFR	R	E	99.700000	83.500000	55.500000	74.300000	Dimethyl (+28)	1725.880000	2.000000	-0.002900	-1.700000	103.000000	117.000000	0.566367	0.197567	0.351800	1.152950	4.227500	2.790700	NaN	NaN	NaN	0.711784	0.286633	0.611720	1.341224	5.740376	4.171762	NaN	NaN	NaN	1.026504	3.013505	0.189391	0.468238	0.197710	0.476757	0.077969	0.140287	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.030300	53123.900000	9.000000	17.000000	23.000000	Spectrum59753 scans:32958,	FTTALSFYDGYR	F[+28]TTALSFYDGYR	C	H	99.700000	62.900000	47.600000	52.700000	Dimethyl (+28)	1467.700000	2.000000	-0.000740	-0.500000	423.000000	434.000000	1.080900	3.863733	4.881500	1.567850	1.246950	1.088950	NaN	NaN	NaN	1.358427	5.605571	8.488089	1.823877	1.693190	1.627850	NaN	NaN	NaN	1.591152	3.649381	0.092458	0.313253	0.096490	0.318859	0.077942	0.140202	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	S-adenosylmethionine synthase isoform type-2 OS=Homo sapiens GN=MAT2A PE=1 SV=1	METK2_HUMAN	METK2_HUMAN	S-adenosylmethionine synthase isoform type-2 OS=Homo sapiens GN=MAT2A PE=1 SV=1	100.000000	0.005760	43642.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.21965.21965.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21965"	FVIGGPQGDAGLTGR	F[+28]VIGGPQGDAGLTGR	R	K	99.700000	77.500000	55.100000	60.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1481.790000	2.000000	-0.001100	-0.770000	250.000000	264.000000	0.671933	0.316167	0.466800	0.157650	0.841900	5.335650	NaN	NaN	2.510443	0.844456	0.458700	0.811685	0.183394	1.143187	7.976157	NaN	NaN	1.203011	0.513925	0.800943	0.363857	0.257078	0.379610	0.261602	0.077343	0.140117	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1	RBM7_HUMAN	RBM7_HUMAN	RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1	97.900000	0.003950	30485.700000	1.000000	2.000000	3.000000	Spectrum15859 scans:5341,	GAAAAEADR	G[+42]AAAAEADR	M	T	99.500000	54.100000	43.100000	29.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	882.410000	2.000000	-0.000220	-0.250000	2.000000	10.000000	0.174467	0.186833	5.208500	0.735800	0.312300	0.432000	NaN	NaN	NaN	0.219262	0.271061	9.056686	0.855955	0.424061	0.645788	NaN	NaN	NaN	0.537608	0.347561	0.340356	0.137924	0.354985	0.139859	0.077317	0.140032	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1	RBM7_HUMAN	RBM7_HUMAN	RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1	97.300000	0.004480	30485.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.5779.5779.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=5779"	GAAAAEADR	G[+42]AAAAEADR	M	T	99.300000	51.300000	46.200000	0.000000	Acetyl (+42)	872.400000	2.000000	0.000520	0.590000	2.000000	10.000000	0.174467	0.186833	5.208500	0.735800	0.312300	0.432000	NaN	NaN	NaN	0.219262	0.271061	9.056686	0.855955	0.424061	0.645788	NaN	NaN	NaN	0.537608	0.347561	0.340356	0.137924	0.354878	0.139818	0.077008	0.139948	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C	sp|Q709C8-4|VP13C_HUMAN	VP13C_HUMAN	Isoform 4 of Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C	99.400000	0.001320	403072.600000	1.000000	1.000000	1.000000	Spectrum33491 scans:2574,	GAAGVVSR	NaN	G	I	99.000000	52.600000	46.100000	0.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	753.440000	2.000000	0.000110	0.140000	3430.000000	3437.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Translation initiation factor eIF-2B subunit epsilon OS=Homo sapiens GN=EIF2B5 PE=4 SV=1	EI2BE_HUMAN	EI2BE_HUMAN	Translation initiation factor eIF-2B subunit epsilon OS=Homo sapiens GN=EIF2B5 PE=1 SV=3	100.000000	0.001320	80362.100000	1.000000	1.000000	1.000000	Spectrum13241 scans:49001,	GAEEEPPPPLQAVLVADSFDR	G[+28]AEEEPPPPLQAVLVADSFDR	R	R	99.700000	79.400000	52.500000	66.200000	Dimethyl (+28)	2264.120000	3.000000	-0.008600	-3.800000	34.000000	54.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 2 of tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2	sp|Q08J23|NSUN2_HUMAN	NSUN2_HUMAN	tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2 PE=1 SV=2	100.000000	0.002360	86454.800000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.14676.14676.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14676"	GAEQLAEGGR	G[+28]AEQLAEGGR	R	M	99.700000	61.600000	50.600000	32.700000	Dimethyl (+28)	1014.510000	2.000000	-0.001100	-1.100000	306.000000	315.000000	0.700100	0.299400	0.458667	1.081700	1.278000	21.346000	2.009071	NaN	NaN	0.879854	0.434375	0.797542	1.258339	1.735352	31.909709	1.343726	NaN	NaN	1.160640	1.084863	0.014750	0.343856	0.015365	0.346855	0.005242	0.139441	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2	sp|Q08J23|NSUN2_HUMAN	NSUN2_HUMAN	tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2 PE=1 SV=2	100.000000	0.009330	86454.800000	2.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.13775.13775.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13775"	GAEQLAEGGR	G[+28]AEQLAEGGR	R	M	98.600000	68.900000	51.300000	37.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1024.530000	2.000000	0.007600	7.400000	306.000000	315.000000	0.700100	0.299400	0.458667	1.081700	1.278000	21.346000	2.009071	NaN	NaN	0.879854	0.434375	0.797542	1.258339	1.735352	31.909709	1.343726	NaN	NaN	1.160640	1.084863	0.014750	0.343856	0.015352	0.346754	0.005233	0.139022	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.065900	83149.600000	5.000000	13.000000	50.000000	Spectrum50700 scans:22348,	GAGAEEVLAPLR	G[+28]AGAEEVLAPLR	D	L	99.700000	90.600000	49.900000	72.100000	Dimethyl (+28), Label:13C(6) (+6)	1215.690000	2.000000	-0.000130	-0.110000	57.000000	68.000000	0.636400	0.315800	0.495967	0.758250	0.515850	0.680400	NaN	NaN	NaN	0.799799	0.458168	0.862401	0.882071	0.700455	1.017116	NaN	NaN	NaN	0.840935	0.579311	0.031117	0.131236	0.032376	0.132265	0.076550	0.138939	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.143000	83149.600000	4.000000	12.000000	57.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.20932.20932.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20932"	GAGAEEVLAPLR	G[+28]AGAEEVLAPLR	D	L	99.700000	80.200000	53.900000	58.400000	Dimethyl (+28)	1209.670000	2.000000	-0.000300	-0.250000	57.000000	68.000000	0.636400	0.315800	0.495967	0.758250	0.515850	0.680400	NaN	NaN	NaN	0.799799	0.458168	0.862401	0.882071	0.700455	1.017116	NaN	NaN	NaN	0.840935	0.579311	0.031117	0.131236	0.032367	0.132189	0.076524	0.138856	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.143000	83149.600000	4.000000	12.000000	57.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.20884.20884.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20884"	GAGAEEVLAPLR	G[+28]AGAEEVLAPLR	D	L	99.700000	86.200000	54.100000	64.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1219.680000	2.000000	-0.000300	-0.250000	57.000000	68.000000	0.636400	0.315800	0.495967	0.758250	0.515850	0.680400	NaN	NaN	NaN	0.799799	0.458168	0.862401	0.882071	0.700455	1.017116	NaN	NaN	NaN	0.840935	0.579311	0.031117	0.131236	0.032357	0.132112	0.076499	0.138772	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform FYB-130 of FYN-binding protein OS=Homo sapiens GN=FYB	sp|O15117-3|FYB_HUMAN	FYB_HUMAN	Isoform 3 of FYN-binding protein OS=Homo sapiens GN=FYB	98.800000	0.001320	0.000000	1.000000	1.000000	1.000000	Spectrum47593 scans:18798,	GAGNLDEEQDSEGETYEDIEASKER	G[+28]AGNLDEEQDSEGETYEDIEASKER	D	E	99.700000	70.800000	46.600000	66.400000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2836.270000	3.000000	-0.007100	-2.500000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	sp|Q86U42-2|PABP2_HUMAN	PABP2_HUMAN	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	100.000000	0.017500	31479.000000	3.000000	5.000000	7.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.18835.18835.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18835"	GAIEDPELEAIKAR	G[+28]AIEDPELEAIKAR	D	V	98.900000	69.600000	56.400000	55.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1584.880000	3.000000	-0.006300	-4.000000	112.000000	125.000000	7.314133	3.082967	0.822833	5.151400	6.168350	1.235250	NaN	NaN	NaN	9.192074	4.472821	1.430766	5.992613	8.375789	1.846551	NaN	NaN	NaN	7.592344	6.424305	0.132204	0.187744	0.137350	0.188341	0.076348	0.138275	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	TCPQ_HUMAN	TCPQ_HUMAN	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	100.000000	0.014500	59603.000000	5.000000	8.000000	11.000000	Spectrum22226 scans:13023,	GAISTIVLR	G[+28]AISTIVLR	D	G	99.500000	56.900000	45.900000	37.200000	Dimethyl (+28), Label:13C(6) (+6)	962.620000	2.000000	-0.000051	-0.053000	370.000000	378.000000	0.598267	0.261767	0.437667	0.656000	0.432200	0.658850	0.472686	0.556786	1.074100	0.751875	0.379776	0.761027	0.763123	0.586869	0.984902	0.316146	0.237130	0.514712	0.610381	0.401258	0.053500	0.058466	0.055566	0.058635	0.005204	0.009422	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction3A (Nsco_Tails_biological_replicate_3_fraction3A_127089)	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	TCPQ_HUMAN	TCPQ_HUMAN	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	100.000000	0.318000	59603.000000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction3A.13002.13002.2 File:"Nsco_Tails_biological_replicate_3_fraction3A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13002"	GAISTIVLR	G[+28]AISTIVLR	D	G	99.000000	60.100000	51.400000	37.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	966.610000	2.000000	-0.004800	-5.000000	370.000000	378.000000	0.598267	0.261767	0.437667	0.656000	0.432200	0.658850	0.472686	0.556786	1.074100	0.751875	0.379776	0.761027	0.763123	0.586869	0.984902	0.316146	0.237130	0.514712	0.610381	0.401258	0.053500	0.058466	0.055533	0.058618	0.005202	0.009417	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	TCPQ_HUMAN	TCPQ_HUMAN	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	100.000000	0.011700	59603.000000	3.000000	5.000000	5.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.36641.36641.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36641"	GAISTIVLR	G[+28]AISTIVLR	D	G	98.800000	54.700000	51.700000	32.900000	Dimethyl (+28)	956.600000	2.000000	-0.000088	-0.091000	370.000000	378.000000	0.598267	0.261767	0.437667	0.656000	0.432200	0.658850	0.472686	0.556786	1.074100	0.751875	0.379776	0.761027	0.763123	0.586869	0.984902	0.316146	0.237130	0.514712	0.610381	0.401258	0.053500	0.058466	0.055516	0.058601	0.005183	0.009411	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Thymidylate kinase OS=Homo sapiens GN=DTYMK PE=1 SV=4	KTHY_HUMAN	KTHY_HUMAN	Thymidylate kinase OS=Homo sapiens GN=DTYMK PE=1 SV=4	94.600000	0.005760	23801.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.26327.26327.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26327"	GALIVLEGVDR	G[+28]ALIVLEGVDR	R	A	99.400000	58.900000	53.700000	33.700000	Dimethyl (+28)	1168.680000	2.000000	-0.000340	-0.290000	6.000000	16.000000	0.659800	0.233167	0.349600	106.860300	1.634850	0.054300	NaN	NaN	NaN	0.829207	0.338282	0.607894	124.310368	2.219906	0.081172	NaN	NaN	NaN	62.569787	1.279094	0.447332	0.403729	0.464048	0.404545	0.075673	0.137945	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Thymidylate kinase OS=Homo sapiens GN=DTYMK PE=1 SV=4	KTHY_HUMAN	KTHY_HUMAN	Thymidylate kinase OS=Homo sapiens GN=DTYMK PE=1 SV=4	96.200000	0.002360	23801.800000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.49754.49754.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=49754"	GALIVLEGVDR	G[+28]ALIVLEGVDR	R	A	99.500000	63.500000	53.800000	40.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1178.690000	2.000000	-0.004600	-3.900000	6.000000	16.000000	0.659800	0.233167	0.349600	106.860300	1.634850	0.054300	NaN	NaN	NaN	0.829207	0.338282	0.607894	124.310368	2.219906	0.081172	NaN	NaN	NaN	62.569787	1.279094	0.447332	0.403729	0.463771	0.403962	0.075649	0.137863	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH	tr|K7ELL7|K7ELL7_HUMAN	K7ELL7_HUMAN	Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=1	100.000000	0.004670	0.000000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.61247.61247.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=61247"	GALSEAEAQALLSGDTQTDATSFYDR	G[+28]ALSEAEAQALLSGDTQTDATSFYDR	D	V	99.700000	90.200000	54.800000	84.700000	Dimethyl (+28), Label:13C(6) (+6)	2750.290000	3.000000	-0.009900	-3.600000	0.000000	0.000000	0.667333	0.342267	0.472700	0.901300	0.759850	0.843800	NaN	NaN	NaN	0.838675	0.496566	0.821944	1.048480	1.031774	1.261380	NaN	NaN	NaN	0.943577	0.764170	0.070487	0.214441	0.072990	0.214503	0.075377	0.137453	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH	tr|K7ELL7|K7ELL7_HUMAN	K7ELL7_HUMAN	Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=1	100.000000	0.004670	0.000000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.61205.61205.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=61205"	GALSEAEAQALLSGDTQTDATSFYDR	G[+28]ALSEAEAQALLSGDTQTDATSFYDR	D	V	99.700000	138.000000	53.000000	138.000000	Dimethyl (+28)	2744.260000	3.000000	-0.020000	-7.200000	0.000000	0.000000	0.667333	0.342267	0.472700	0.901300	0.759850	0.843800	NaN	NaN	NaN	0.838675	0.496566	0.821944	1.048480	1.031774	1.261380	NaN	NaN	NaN	0.943577	0.764170	0.070487	0.214441	0.072925	0.378489	0.075353	0.137371	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.030700	60327.200000	3.000000	9.000000	13.000000	NSco_TAILS_20150124_Protein_complex_100Kda.40174.40174.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40174"	GANDFMCDEMER	G[+28]ANDFMC[+57]DEMER	R	S	99.300000	37.900000	33.800000	37.900000	Dimethyl (+28), Carbamidomethyl (+57)	1501.560000	2.000000	-0.004000	-2.600000	379.000000	390.000000	0.810800	NaN	NaN	NaN	4.220650	NaN	NaN	NaN	NaN	1.018977	NaN	NaN	NaN	5.731075	NaN	NaN	NaN	NaN	1.018977	5.731075	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.030700	60327.200000	3.000000	9.000000	13.000000	NSco_TAILS_20150124_Protein_complex_100Kda.40177.40177.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40177"	GANDFMCDEMER	G[+28]ANDFMC[+57]DEMER	R	S	99.700000	47.400000	34.300000	47.400000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1511.570000	2.000000	-0.006600	-4.300000	379.000000	390.000000	0.810800	NaN	NaN	NaN	4.220650	NaN	NaN	NaN	NaN	1.018977	NaN	NaN	NaN	5.731075	NaN	NaN	NaN	NaN	1.018977	5.731075	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.030700	60327.200000	3.000000	9.000000	13.000000	NSco_TAILS_20150124_Protein_complex_100Kda.28670.28670.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28670"	GANDFMCDEMER	G[+28]ANDFMC[+57]DEMER	R	S	99.700000	46.800000	32.800000	32.600000	Dimethyl (+28), Oxidation (+16), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1527.570000	2.000000	-0.001500	-0.960000	379.000000	390.000000	0.810800	NaN	NaN	NaN	4.220650	NaN	NaN	NaN	NaN	1.018977	NaN	NaN	NaN	5.731075	NaN	NaN	NaN	NaN	1.018977	5.731075	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.030700	60327.200000	3.000000	9.000000	13.000000	NSco_TAILS_20150124_Protein_complex_100Kda.28735.28735.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28735"	GANDFMCDEMER	G[+28]ANDFMC[+57]DEMER	R	S	99.700000	50.300000	32.400000	14.200000	Dimethyl (+28), Oxidation (+16), Carbamidomethyl (+57)	1517.550000	2.000000	-0.003700	-2.500000	379.000000	390.000000	0.810800	NaN	NaN	NaN	4.220650	NaN	NaN	NaN	NaN	1.018977	NaN	NaN	NaN	5.731075	NaN	NaN	NaN	NaN	1.018977	5.731075	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3	PRS6A_HUMAN	PRS6A_HUMAN	26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3	100.000000	0.008960	49187.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.9054.9054.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9054"	GANIDLDSQR	G[+28]ANIDLDSQR	D	K	98.700000	48.700000	51.000000	33.700000	Dimethyl (+28)	1115.560000	2.000000	-0.000800	-0.720000	108.000000	117.000000	0.626400	0.193033	0.299067	0.724950	0.336850	0.464150	1.084086	4.091443	4.798157	0.787231	0.280056	0.520026	0.843333	0.457397	0.693849	0.725068	1.742507	2.299289	0.785211	0.826653	0.001887	0.214664	0.001943	0.542524	0.005034	0.009300	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3	PRS6A_HUMAN	PRS6A_HUMAN	26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3	100.000000	0.008960	49187.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.9066.9066.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9066"	GANIDLDSQR	G[+28]ANIDLDSQR	D	K	99.600000	56.800000	51.200000	35.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1125.560000	2.000000	-0.000910	-0.810000	108.000000	117.000000	0.626400	0.193033	0.299067	0.724950	0.336850	0.464150	1.084086	4.091443	4.798157	0.787231	0.280056	0.520026	0.843333	0.457397	0.693849	0.725068	1.742507	2.299289	0.785211	0.826653	0.001887	0.214664	0.001943	0.542129	0.005023	0.009273	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone H1x OS=Homo sapiens GN=H1FX PE=1 SV=1	H1X_HUMAN	H1X_HUMAN	Histone H1x OS=Homo sapiens GN=H1FX PE=1 SV=1	100.000000	0.001320	22469.900000	1.000000	1.000000	1.000000	Spectrum15692 scans:5058,	GAPAAATAPAPTAH	G[+28]APAAATAPAPTAH	R	K	99.700000	89.300000	49.000000	73.200000	Dimethyl (+28)	1230.630000	2.000000	-0.001000	-0.830000	129.000000	142.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Neutral alpha-glucosidase AB OS=Homo sapiens GN=GANAB	sp|Q14697-2|GANAB_HUMAN	GANAB_HUMAN	Isoform 2 of Neutral alpha-glucosidase AB OS=Homo sapiens GN=GANAB	98.900000	0.005010	109422.200000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.2710.2710.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2710"	GAQPEETPR	G[+28]AQPEETPR	D	D	99.200000	49.500000	49.800000	38.800000	Dimethyl (+28)	1011.500000	2.000000	0.000500	0.490000	220.000000	228.000000	2.156067	0.667767	0.772567	0.756550	0.611700	0.809050	NaN	13.749314	NaN	2.709648	0.968807	1.343361	0.880093	0.830606	1.209433	NaN	5.855702	NaN	1.794870	2.551705	0.300069	0.262543	0.308790	0.480245	0.073626	0.009256	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Neutral alpha-glucosidase AB OS=Homo sapiens GN=GANAB	sp|Q14697-2|GANAB_HUMAN	GANAB_HUMAN	Isoform 2 of Neutral alpha-glucosidase AB OS=Homo sapiens GN=GANAB	98.900000	0.004480	109422.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.3038.3038.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3038"	GAQPEETPR	G[+28]AQPEETPR	D	D	99.700000	61.200000	50.900000	46.700000	Dimethyl (+28), Label:13C(6) (+6)	1017.520000	2.000000	0.000079	0.078000	220.000000	228.000000	2.156067	0.667767	0.772567	0.756550	0.611700	0.809050	NaN	13.749314	NaN	2.709648	0.968807	1.343361	0.880093	0.830606	1.209433	NaN	5.855702	NaN	1.794870	2.551705	0.300069	0.262543	0.308698	0.479992	0.073603	0.009251	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	sp|P49368|TCPG_HUMAN	TCPG_HUMAN	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	100.000000	0.017300	60517.400000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.14311.14311.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14311"	GASKEILSEVER	G[+28]ASKEILSEVER	R	N	99.600000	60.700000	55.200000	49.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1390.780000	2.000000	-0.002800	-2.000000	378.000000	389.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	sp|P49368|TCPG_HUMAN	TCPG_HUMAN	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	100.000000	0.017300	60517.400000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.14310.14310.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14310"	GASKEILSEVER	G[+28]ASKEILSEVER	R	N	99.700000	72.700000	54.900000	42.300000	Dimethyl (+28), Dimethyl (+28)	1372.750000	2.000000	-0.003900	-2.900000	378.000000	389.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	UTP--glucose-1-phosphate uridylyltransferase (Fragment) OS=Homo sapiens GN=UGP2 PE=4 SV=1	C9J3M0_HUMAN	C9J3M0_HUMAN	UTP--glucose-1-phosphate uridylyltransferase (Fragment) OS=Homo sapiens GN=UGP2 PE=4 SV=1	100.000000	0.007510	4348.900000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.16363.16363.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16363"	GASQFQEVIR	G[+28]ASQFQEVIR	D	Q	99.700000	62.600000	53.100000	45.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1171.620000	2.000000	-0.000870	-0.740000	5.000000	14.000000	25.634433	2.062400	0.685567	0.917150	0.568200	0.617500	0.763071	2.343729	NaN	32.216204	2.992166	1.192083	1.066919	0.771539	0.923088	0.510364	0.998172	NaN	11.264496	1.587292	0.336212	0.153356	0.344654	0.308669	0.005001	0.009213	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	HTSF1_HUMAN	HTSF1_HUMAN	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	100.000000	0.016500	85836.600000	3.000000	5.000000	7.000000	NSco_TAILS_20150124_Protein_complex_100Kda.14249.14249.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14249"	GASSSTANVEDVHAR	G[+28]ASSSTANVEDVHAR	D	T	99.700000	86.700000	51.400000	80.700000	Dimethyl (+28)	1527.730000	3.000000	0.000820	0.540000	81.000000	95.000000	1.955900	0.115500	0.130133	NaN	5.103100	8.991000	NaN	NaN	NaN	2.458087	0.167569	0.226279	NaN	6.929323	13.440466	NaN	NaN	NaN	2.458087	3.548446	NaN	0.484608	NaN	0.974834	1.000000	0.135046	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.026000	57471.900000	7.000000	11.000000	11.000000	NSco_TAILS_20150124_Protein_complex_100Kda.32586.32586.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32586"	GATQQILDEAER	G[+28]ATQQILDEAER	R	S	99.700000	83.400000	52.800000	48.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1367.690000	2.000000	-0.004200	-3.100000	377.000000	388.000000	0.623800	0.285400	0.458400	0.642950	0.450050	0.700150	NaN	NaN	NaN	0.783964	0.414063	0.797079	0.747942	0.611107	1.046640	NaN	NaN	NaN	0.765953	0.512585	0.014967	0.120888	0.015329	0.968779	0.072587	0.134967	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.038200	57471.900000	5.000000	15.000000	29.000000	Spectrum19638 scans:13326,	GATQQILDEAER	G[+28]ATQQILDEAER	R	S	99.700000	84.100000	49.800000	65.700000	Dimethyl (+28), Label:13C(6) (+6)	1363.700000	2.000000	-0.001300	-0.920000	377.000000	388.000000	0.623800	0.285400	0.458400	0.642950	0.450050	0.700150	NaN	NaN	NaN	0.783964	0.414063	0.797079	0.747942	0.611107	1.046640	NaN	NaN	NaN	0.765953	0.512585	0.014967	0.120888	0.015324	0.220200	0.072541	0.134731	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.038200	57471.900000	5.000000	15.000000	29.000000	Spectrum7399 scans:28482,	GATQQILDEAER	G[+28]ATQQILDEAER	R	S	99.700000	89.700000	49.000000	73.400000	Dimethyl (+28)	1357.680000	2.000000	-0.001100	-0.840000	377.000000	388.000000	0.623800	0.285400	0.458400	0.642950	0.450050	0.700150	NaN	NaN	NaN	0.783964	0.414063	0.797079	0.747942	0.611107	1.046640	NaN	NaN	NaN	0.765953	0.512585	0.014967	0.120888	0.015315	0.220085	0.072518	0.134653	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	EIF3D_HUMAN	EIF3D_HUMAN	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	100.000000	0.005270	63955.800000	3.000000	4.000000	4.000000	Spectrum20206 scans:15174,	GAVIATELKNNSY	G[+28]AVIATELKNNSY	R	K	99.700000	80.800000	51.100000	60.400000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1442.780000	2.000000	-0.002600	-1.800000	418.000000	430.000000	NaN	1.464333	NaN	NaN	NaN	2.988300	NaN	NaN	NaN	NaN	2.124480	NaN	NaN	NaN	4.467150	NaN	NaN	NaN	NaN	2.124480	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1	CPNE1_HUMAN	CPNE1_HUMAN	Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1	99.700000	0.002880	59040.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.7449.7449.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7449"	GAVTDVEATR	G[+28]AVTDVEATR	D	E	99.400000	56.900000	51.600000	28.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1055.550000	2.000000	-0.000350	-0.330000	423.000000	432.000000	0.521733	0.392533	0.750833	0.139700	0.607550	4.429550	NaN	NaN	3.110643	0.655691	0.569494	1.305570	0.162513	0.824971	6.621646	NaN	NaN	1.490628	0.409102	0.697233	0.345331	0.115354	0.353064	0.147596	0.072111	0.134496	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2	RL15_HUMAN	RL15_HUMAN	60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2	100.000000	0.008960	24128.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.25107.25107.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25107"	GAYKYIQELWR	G[+28]AYKYIQELWR	M	K	99.600000	66.000000	55.500000	53.300000	Dimethyl (+28), Dimethyl (+28)	1481.800000	2.000000	0.001700	1.100000	2.000000	12.000000	16.048300	3.422933	0.186233	54.346150	14.263250	0.259200	0.246543	0.099243	6.118014	20.168782	4.966051	0.323828	63.220765	19.367574	0.387473	0.164895	0.042267	2.931768	27.851481	8.125297	0.176828	0.223928	0.180734	0.286199	0.004915	0.009165	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2	RL15_HUMAN	RL15_HUMAN	60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2	100.000000	0.008960	24128.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.25099.25099.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25099"	GAYKYIQELWR	G[+28]AYKYIQELWR	M	K	99.700000	68.300000	55.800000	50.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1499.830000	2.000000	0.001800	1.200000	2.000000	12.000000	16.048300	3.422933	0.186233	54.346150	14.263250	0.259200	0.246543	0.099243	6.118014	20.168782	4.966051	0.323828	63.220765	19.367574	0.387473	0.164895	0.042267	2.931768	27.851481	8.125297	0.176828	0.223928	0.180681	0.301058	0.004901	0.009160	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HSPA4L PE=1 SV=3	HS74L_HUMAN	HS74L_HUMAN	Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HSPA4L PE=1 SV=3	100.000000	0.005760	94496.500000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.27870.27870.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27870"	GCALQCAILSPAFKVR	G[+28]C[+57]ALQC[+57]AILSPAFKVR	R	E	98.800000	71.300000	57.800000	63.700000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1864.020000	3.000000	-0.001100	-0.580000	375.000000	390.000000	8.033167	4.097433	0.545967	122.995350	NaN	1.139450	NaN	NaN	NaN	10.095723	5.944627	0.949342	143.080238	NaN	1.703341	NaN	NaN	NaN	76.587981	5.944627	0.000000	NaN	0.000000	NaN	0.071865	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Chromosome 20 open reading frame 43 (Fragment) OS=Homo sapiens GN=C20orf43 PE=4 SV=1	A8MSH5_HUMAN	A8MSH5_HUMAN	UPF0549 protein C20orf43 OS=Homo sapiens GN=C20orf43 PE=4 SV=2	97.500000	0.001320	37514.200000	1.000000	1.000000	1.000000	Spectrum34138 scans:3293,	GCDGGTIPKR	NaN	M	H	99.100000	32.200000	48.800000	13.300000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1133.600000	3.000000	0.000380	0.330000	2.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	CWF19-like protein 1 OS=Homo sapiens GN=CWF19L1 PE=1 SV=2	sp|Q69YN2|C19L1_HUMAN	C19L1_HUMAN	CWF19-like protein 1 OS=Homo sapiens GN=CWF19L1 PE=1 SV=2	99.800000	0.004480	60602.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.22519.22519.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22519"	GCELAENITYLGR	G[+28]C[+57]ELAENITYLGR	D	K	99.700000	59.600000	52.600000	48.300000	Dimethyl (+28), Carbamidomethyl (+57)	1522.740000	2.000000	-0.000640	-0.420000	86.000000	98.000000	1.910800	2.136600	1.602600	0.675050	1.270750	1.656750	NaN	NaN	NaN	2.401408	3.099816	2.786646	0.785284	1.725508	2.476642	NaN	NaN	NaN	1.593346	2.412662	0.298797	0.176640	0.305039	0.686383	0.071048	0.134106	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1	sp|P22102|PUR2_HUMAN	PUR2_HUMAN	Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1	100.000000	0.012500	107750.400000	2.000000	4.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.32764.32764.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32764"	GCGDQTLGDLLLTPTR	G[+28]C[+57]GDQTLGDLLLTPTR	D	I	99.700000	113.000000	55.200000	106.000000	Dimethyl (+28), Carbamidomethyl (+57)	1743.880000	2.000000	0.000009	0.005300	645.000000	660.000000	0.675300	0.195567	0.290733	0.682350	0.197850	0.290000	NaN	NaN	NaN	0.848687	0.283732	0.505535	0.793776	0.268654	0.433515	NaN	NaN	NaN	0.821232	0.276193	0.021275	0.017373	0.021701	0.048892	0.071027	0.134029	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1	sp|P22102|PUR2_HUMAN	PUR2_HUMAN	Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1	100.000000	0.013400	107750.400000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.28062.28062.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28062"	GCGDQTLGDLLLTPTR	G[+28]C[+57]GDQTLGDLLLTPTR	D	I	99.700000	111.000000	55.200000	107.000000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1753.890000	2.000000	-0.005900	-3.300000	645.000000	660.000000	0.675300	0.195567	0.290733	0.682350	0.197850	0.290000	NaN	NaN	NaN	0.848687	0.283732	0.505535	0.793776	0.268654	0.433515	NaN	NaN	NaN	0.821232	0.276193	0.021275	0.017373	0.021694	0.025587	0.070701	0.133951	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Phosphoglycerate kinase 1 OS=Homo sapiens GN=PGK1 PE=1 SV=3	PGK1_HUMAN	PGK1_HUMAN	Phosphoglycerate kinase 1 OS=Homo sapiens GN=PGK1 PE=1 SV=3	100.000000	0.011800	44597.300000	4.000000	4.000000	5.000000	NSco_TAILS_20150124_Protein_complex_100Kda.43499.43499.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43499"	GCITIIGGGDTATCC	G[+28]C[+57]ITIIGGGDTATC[+57]C[+57]	R	A	99.500000	60.600000	43.400000	60.600000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Carbamidomethyl (+57)	1582.670000	2.000000	-0.014000	-8.800000	366.000000	380.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.132000	31307.200000	4.000000	10.000000	10.000000	Nsco_Tails_biological_replicate_3_fraction2A.12914.12914.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12914"	GCTATLGNFAK	G[+28]C[+57]TATLGNFAK	R	A	99.700000	89.100000	51.900000	80.000000	Dimethyl (+28), Carbamidomethyl (+57), Dimethyl (+28)	1194.610000	2.000000	-0.000900	-0.750000	228.000000	238.000000	3.897400	2.318867	1.700900	1.124350	1.815400	0.705400	NaN	NaN	NaN	4.898077	3.364252	2.957573	1.307954	2.465069	1.054488	NaN	NaN	NaN	3.103016	2.914660	0.333877	0.097432	0.338560	0.143379	0.070080	0.133719	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.029000	31307.200000	7.000000	15.000000	22.000000	Spectrum19513 scans:12899,	GCTATLGNFAK	G[+28]C[+57]TATLGNFAK	R	A	99.700000	83.500000	49.200000	62.900000	Dimethyl (+28), Carbamidomethyl (+57), Dimethyl:2H(4) (+32)	1198.630000	2.000000	-0.001500	-1.200000	228.000000	238.000000	3.897400	2.318867	1.700900	1.124350	1.815400	0.705400	NaN	NaN	NaN	4.898077	3.364252	2.957573	1.307954	2.465069	1.054488	NaN	NaN	NaN	3.103016	2.914660	0.333877	0.097432	0.338461	0.797378	0.069931	0.133641	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 4 of Sorting nexin-3 OS=Homo sapiens GN=SNX3	sp|O60493-4|SNX3_HUMAN	SNX3_HUMAN	Isoform 4 of Sorting nexin-3 OS=Homo sapiens GN=SNX3	100.000000	0.007000	16298.300000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.57885.57885.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=57885"	GDDGIFDDNFIEER	G[+28]DDGIFDDNFIEER	R	K	99.400000	56.600000	45.800000	55.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1678.730000	2.000000	-0.009900	-5.900000	83.000000	96.000000	0.778767	0.210467	0.402033	0.357650	NaN	NaN	NaN	NaN	NaN	0.978719	0.305349	0.699067	0.416054	NaN	NaN	NaN	NaN	NaN	0.697386	0.305349	0.244107	NaN	0.247242	NaN	0.069868	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Nucleoside diphosphate kinase OS=Homo sapiens GN=NME1-NME2 PE=2 SV=1	Q32Q12_HUMAN	Q32Q12_HUMAN	Nucleoside diphosphate kinase OS=Homo sapiens GN=NME1-NME2 PE=2 SV=1	100.000000	0.008640	32624.200000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.18740.18740.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18740"	GDFCIQVGR	G[+28]DFC[+57]IQVGR	R	T	99.500000	56.700000	50.100000	43.500000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1088.530000	2.000000	0.000092	0.084000	131.000000	139.000000	0.697700	4.322233	3.989567	0.079950	2.875200	44.240250	2.850286	4.839543	10.454900	0.876838	6.270771	6.937170	0.093006	3.904135	66.133867	1.906354	2.061115	5.010015	0.958733	4.078674	0.209401	0.078824	0.212029	0.704943	0.004762	0.009096	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H	sp|O00267-2|SPT5H_HUMAN	SPT5H_HUMAN	Isoform 2 of Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H	99.500000	0.002500	120481.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.30761.30761.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30761"	GDFLIFEGNR	G[+28]DFLIFEGNR	D	Y	98.800000	48.300000	51.800000	32.100000	Dimethyl (+28)	1194.600000	2.000000	0.000180	0.150000	352.000000	361.000000	7.916867	0.370967	0.188500	0.923300	0.460000	0.498800	NaN	NaN	NaN	9.949562	0.538205	0.327769	1.074073	0.624618	0.745646	NaN	NaN	NaN	5.511818	0.581411	0.431541	0.047223	0.436319	0.056079	0.069826	0.133333	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH	tr|K7ELL7|K7ELL7_HUMAN	K7ELL7_HUMAN	Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=1	100.000000	0.015000	0.000000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.35587.35587.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35587"	GDGALSEAEAQALLSGDTQTDATSFYDR	G[+28]DGALSEAEAQALLSGDTQTDATSFYDR	D	V	99.700000	90.600000	52.600000	89.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2926.330000	3.000000	-0.006600	-2.200000	0.000000	0.000000	5.325767	15.325400	NaN	0.887400	0.722300	0.814600	NaN	NaN	NaN	6.693184	22.234355	NaN	1.032311	0.980786	1.217729	NaN	NaN	NaN	3.862747	11.607571	0.402580	0.437760	0.406563	0.519681	0.069658	0.133257	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH	tr|K7ELL7|K7ELL7_HUMAN	K7ELL7_HUMAN	Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=1	100.000000	0.015000	0.000000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.35596.35596.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35596"	GDGALSEAEAQALLSGDTQTDATSFYDR	G[+28]DGALSEAEAQALLSGDTQTDATSFYDR	D	V	99.700000	124.000000	53.500000	124.000000	Dimethyl (+28)	2916.340000	3.000000	0.012000	4.000000	0.000000	0.000000	5.325767	15.325400	NaN	0.887400	0.722300	0.814600	NaN	NaN	NaN	6.693184	22.234355	NaN	1.032311	0.980786	1.217729	NaN	NaN	NaN	3.862747	11.607571	0.402580	0.437760	0.406091	1.000000	0.069637	0.133180	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2	LSM3_HUMAN	LSM3_HUMAN	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2	100.000000	0.008640	11827.500000	3.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.23704.23704.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23704"	GDGVVLVAPPLR	G[+28]DGVVLVAPPLR	R	V	99.700000	73.000000	53.800000	51.400000	Dimethyl (+28)	1219.730000	2.000000	-0.000760	-0.630000	89.000000	100.000000	0.405400	0.201267	0.512067	NaN	NaN	0.274650	NaN	NaN	NaN	0.509489	0.292001	0.890396	NaN	NaN	0.410569	NaN	NaN	NaN	0.509489	0.292001	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	C1QBP_HUMAN	C1QBP_HUMAN	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	100.000000	0.005760	31344.600000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.33642.33642.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33642"	GDKAFVDFLSDEIKEER	G[+28]DKAFVDFLSDEIKEER	D	K	99.200000	75.900000	58.200000	54.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2107.100000	3.000000	-0.001600	-0.750000	78.000000	94.000000	8.747300	8.732500	2.382700	107.620500	74.196350	0.689900	NaN	NaN	NaN	10.993214	12.669262	4.143106	125.194707	100.748659	1.031318	NaN	NaN	NaN	68.093960	56.708961	0.000000	0.000000	0.000000	0.000000	0.069595	0.133027	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.040300	19463.200000	5.000000	11.000000	14.000000	Nsco_Tails_biological_replicate1_apoptosis.26161.26161.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26161"	GDLTLYQSNTILR	G[+28]DLTLYQSNTILR	D	H	99.700000	78.000000	55.600000	57.400000	Dimethyl (+28)	1520.820000	2.000000	-0.001900	-1.300000	59.000000	71.000000	0.638767	0.322567	0.504933	22.623300	16.225500	0.566300	NaN	NaN	NaN	0.802773	0.467985	0.877992	26.317639	22.032046	0.846551	NaN	NaN	NaN	13.560206	11.250015	0.449003	0.470229	0.452262	1.000000	0.069574	0.132950	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.040300	19463.200000	5.000000	11.000000	14.000000	Nsco_Tails_biological_replicate1_apoptosis.26178.26178.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26178"	GDLTLYQSNTILR	G[+28]DLTLYQSNTILR	D	H	99.700000	84.000000	55.700000	64.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1530.830000	2.000000	-0.002900	-1.900000	59.000000	71.000000	0.638767	0.322567	0.504933	22.623300	16.225500	0.566300	NaN	NaN	NaN	0.802773	0.467985	0.877992	26.317639	22.032046	0.846551	NaN	NaN	NaN	13.560206	11.250015	0.449003	0.470229	0.452130	0.870701	0.069553	0.132874	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 5 of Serrate RNA effector molecule homolog OS=Homo sapiens GN=SRRT	sp|Q9BXP5-5|SRRT_HUMAN	SRRT_HUMAN	Isoform 5 of Serrate RNA effector molecule homolog OS=Homo sapiens GN=SRRT	100.000000	0.003950	96207.500000	2.000000	3.000000	3.000000	Spectrum25894 scans:5686,	GDSDDEYDR	G[+42]DSDDEYDR	M	R	99.700000	42.800000	27.400000	42.800000	Acetyl (+42)	1112.390000	2.000000	-0.000130	-0.120000	2.000000	10.000000	NaN	NaN	NaN	1.655900	0.228100	0.119550	NaN	NaN	NaN	NaN	NaN	NaN	1.926305	0.309729	0.178713	NaN	NaN	NaN	1.926305	0.309729	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 5 of Serrate RNA effector molecule homolog OS=Homo sapiens GN=SRRT	sp|Q9BXP5-5|SRRT_HUMAN	SRRT_HUMAN	Isoform 5 of Serrate RNA effector molecule homolog OS=Homo sapiens GN=SRRT	100.000000	0.003950	96207.500000	2.000000	3.000000	3.000000	Spectrum25900 scans:5695,	GDSDDEYDR	G[+42]DSDDEYDR	M	R	99.700000	62.700000	27.700000	62.700000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1122.400000	2.000000	-0.000480	-0.430000	2.000000	10.000000	NaN	NaN	NaN	1.655900	0.228100	0.119550	NaN	NaN	NaN	NaN	NaN	NaN	1.926305	0.309729	0.178713	NaN	NaN	NaN	1.926305	0.309729	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	dCTP pyrophosphatase 1 OS=Homo sapiens GN=DCTPP1 PE=1 SV=1	DCTP1_HUMAN	DCTP1_HUMAN	dCTP pyrophosphatase 1 OS=Homo sapiens GN=DCTPP1 PE=1 SV=1	99.900000	0.002330	18663.200000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.8599.8599.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8599"	GDTGGEDTAAPGR	G[+28]DTGGEDTAAPGR	R	F	99.700000	92.200000	46.200000	85.400000	Dimethyl (+28)	1230.550000	2.000000	-0.001900	-1.500000	10.000000	22.000000	NaN	0.324367	NaN	NaN	0.011900	NaN	NaN	NaN	NaN	NaN	0.470597	NaN	NaN	0.016159	NaN	NaN	NaN	NaN	NaN	0.243378	NaN	0.478149	NaN	0.797299	NaN	0.131889	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2	PRP16_HUMAN	PRP16_HUMAN	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2	99.700000	0.002630	140487.500000	1.000000	1.000000	2.000000	Spectrum21606 scans:4275,	GDTSEDASIHR	G[+42]DTSEDASIHR	M	L	99.700000	77.300000	41.500000	69.300000	Acetyl (+42)	1228.530000	2.000000	-0.000190	-0.150000	2.000000	12.000000	0.594600	0.679633	1.223300	0.691900	1.263650	1.829850	0.701586	7.411229	5.365243	0.747267	0.986024	2.127108	0.804886	1.715867	2.735406	0.469241	3.156372	2.571038	0.673798	1.952754	0.022843	0.092123	0.022896	0.161938	0.004725	0.008987	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Proactivator polypeptide OS=Homo sapiens GN=PSAP PE=4 SV=1	B1AVU8_HUMAN	B1AVU8_HUMAN	Proactivator polypeptide OS=Homo sapiens GN=PSAP PE=4 SV=1	97.400000	0.008640	61674.000000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.25824.25824.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25824"	GDVCQDCIQMVTDIQTAVR	G[+28]DVC[+57]QDC[+57]IQMVTDIQTAVR	N	T	99.700000	107.000000	50.800000	107.000000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Oxidation (+16)	2252.020000	2.000000	-0.003800	-1.700000	195.000000	213.000000	0.567767	0.364867	0.642400	NaN	2.556250	6.593850	NaN	NaN	NaN	0.713544	0.529355	1.117023	NaN	3.471044	9.857015	NaN	NaN	NaN	0.713544	2.000199	NaN	0.403654	NaN	1.000000	1.000000	0.131664	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Proactivator polypeptide OS=Homo sapiens GN=PSAP PE=4 SV=1	B1AVU8_HUMAN	B1AVU8_HUMAN	Proactivator polypeptide OS=Homo sapiens GN=PSAP PE=4 SV=1	97.400000	0.008640	61674.000000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.35474.35474.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35474"	GDVCQDCIQMVTDIQTAVR	G[+28]DVC[+57]QDC[+57]IQMVTDIQTAVR	N	T	99.700000	119.000000	52.800000	119.000000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2246.050000	2.000000	0.008200	3.600000	195.000000	213.000000	0.567767	0.364867	0.642400	NaN	2.556250	6.593850	NaN	NaN	NaN	0.713544	0.529355	1.117023	NaN	3.471044	9.857015	NaN	NaN	NaN	0.713544	2.000199	NaN	0.403654	NaN	1.000000	1.000000	0.131589	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Proactivator polypeptide OS=Homo sapiens GN=PSAP PE=4 SV=1	B1AVU8_HUMAN	B1AVU8_HUMAN	Proactivator polypeptide OS=Homo sapiens GN=PSAP PE=4 SV=1	97.700000	0.009330	61674.000000	1.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.62481.62481.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=62481"	GDVCQDCIQMVTDIQTAVR	G[+28]DVC[+57]QDC[+57]IQMVTDIQTAVR	N	T	99.700000	79.900000	52.900000	79.900000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6) (+6)	2242.050000	2.000000	-0.003700	-1.600000	195.000000	213.000000	0.567767	0.364867	0.642400	NaN	2.556250	6.593850	NaN	NaN	NaN	0.713544	0.529355	1.117023	NaN	3.471044	9.857015	NaN	NaN	NaN	0.713544	2.000199	NaN	0.403654	NaN	0.599606	1.000000	0.131514	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Proactivator polypeptide OS=Homo sapiens GN=PSAP PE=4 SV=1	B1AVU8_HUMAN	B1AVU8_HUMAN	Proactivator polypeptide OS=Homo sapiens GN=PSAP PE=4 SV=1	97.700000	0.009330	61674.000000	1.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.62432.62432.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=62432"	GDVCQDCIQMVTDIQTAVR	G[+28]DVC[+57]QDC[+57]IQMVTDIQTAVR	N	T	99.700000	97.000000	51.700000	97.000000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57)	2236.030000	2.000000	-0.003600	-1.600000	195.000000	213.000000	0.567767	0.364867	0.642400	NaN	2.556250	6.593850	NaN	NaN	NaN	0.713544	0.529355	1.117023	NaN	3.471044	9.857015	NaN	NaN	NaN	0.713544	2.000199	NaN	0.403654	NaN	0.599349	1.000000	0.131439	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Kaptin OS=Homo sapiens GN=KPTN PE=2 SV=2	KPTN_HUMAN	KPTN_HUMAN	Kaptin OS=Homo sapiens GN=KPTN PE=2 SV=2	97.700000	0.002630	48061.800000	1.000000	2.000000	2.000000	Spectrum29797 scans:14892,	GEAAVAAGPCPLR	G[+42]EAAVAAGPC[+57]PLR	M	E	99.500000	60.100000	49.000000	45.200000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6) (+6)	1315.660000	2.000000	-0.001800	-1.400000	3.000000	15.000000	0.623067	0.237067	0.415633	0.548550	0.339750	0.617700	NaN	NaN	NaN	0.783042	0.343940	0.722715	0.638127	0.461335	0.923387	NaN	NaN	NaN	0.710585	0.402638	0.064692	0.092158	0.075002	0.104064	0.068625	0.131290	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Kaptin OS=Homo sapiens GN=KPTN PE=2 SV=2	KPTN_HUMAN	KPTN_HUMAN	Kaptin OS=Homo sapiens GN=KPTN PE=2 SV=2	98.600000	0.002500	48061.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.18518.18518.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18518"	GEAAVAAGPCPLR	G[+42]EAAVAAGPC[+57]PLR	M	E	99.600000	57.200000	51.900000	40.400000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1319.650000	2.000000	0.001100	0.810000	3.000000	15.000000	0.623067	0.237067	0.415633	0.548550	0.339750	0.617700	NaN	NaN	NaN	0.783042	0.343940	0.722715	0.638127	0.461335	0.923387	NaN	NaN	NaN	0.710585	0.402638	0.064692	0.092158	0.074977	0.282499	0.068280	0.130771	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369|FLNB_HUMAN	FLNB_HUMAN	Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2	100.000000	0.018400	278140.800000	8.000000	12.000000	14.000000	Spectrum20553 scans:16672,	GEAGVPAEF	G[+28]EAGVPAEF	R	S	98.600000	45.200000	45.200000	28.400000	Dimethyl (+28)	903.430000	2.000000	-0.000240	-0.270000	2206.000000	2214.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	FKBP4_HUMAN	FKBP4_HUMAN	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	100.000000	0.004720	51787.900000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.36660.36660.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36660"	GEDLTEEEDGGIIR	G[+28]EDLTEEEDGGIIR	K	R	99.500000	61.100000	50.200000	54.800000	Dimethyl (+28)	1559.730000	2.000000	-0.006400	-4.100000	139.000000	152.000000	0.313067	NaN	NaN	0.155900	0.562550	2.580850	NaN	NaN	NaN	0.393448	NaN	NaN	0.181358	0.763867	3.858061	NaN	NaN	NaN	0.287403	0.763867	0.225032	NaN	0.229193	NaN	0.068220	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	LRC47_HUMAN	LRC47_HUMAN	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	100.000000	0.027500	63456.700000	3.000000	5.000000	11.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.3364.3364.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3364"	GEEQDVGDAGR	G[+28]EEQDVGDAGR	D	L	99.700000	64.200000	46.500000	47.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1169.530000	2.000000	0.006400	5.500000	296.000000	306.000000	NaN	NaN	NaN	0.722850	0.226400	0.312050	NaN	NaN	NaN	NaN	NaN	NaN	0.840890	0.307421	0.466477	NaN	NaN	NaN	0.840890	0.307421	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	LRC47_HUMAN	LRC47_HUMAN	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	100.000000	0.027500	63456.700000	3.000000	5.000000	11.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.3361.3361.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3361"	GEEQDVGDAGR	G[+28]EEQDVGDAGR	D	L	99.700000	59.600000	45.400000	42.900000	Dimethyl (+28)	1159.510000	2.000000	0.000480	0.410000	296.000000	306.000000	NaN	NaN	NaN	0.722850	0.226400	0.312050	NaN	NaN	NaN	NaN	NaN	NaN	0.840890	0.307421	0.466477	NaN	NaN	NaN	0.840890	0.307421	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.040800	82573.600000	11.000000	21.000000	31.000000	Spectrum66281 scans:40622,	GEFEGFVAVVNKAM	G[+28]EFEGFVAVVNKAM	R	S	99.600000	70.800000	51.300000	56.600000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1556.820000	2.000000	0.000550	0.350000	326.000000	339.000000	NaN	NaN	1.292050	3.454550	1.868050	0.855200	NaN	NaN	NaN	NaN	NaN	2.246653	4.018671	2.536561	1.278421	NaN	NaN	NaN	4.018671	2.536561	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Early endosome antigen 1 OS=Homo sapiens GN=EEA1 PE=1 SV=2	EEA1_HUMAN	EEA1_HUMAN	Early endosome antigen 1 OS=Homo sapiens GN=EEA1 PE=1 SV=2	100.000000	0.005270	162450.100000	3.000000	4.000000	4.000000	Spectrum10863 scans:38939,	GEIAVLEATVQNNQDER	G[+28]EIAVLEATVQNNQDER	R	R	99.700000	61.200000	51.800000	54.700000	Dimethyl (+28), Label:13C(6) (+6)	1918.970000	3.000000	-0.002100	-1.100000	1276.000000	1292.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Homo sapiens GN=PPP1CB PE=1 SV=3	PP1B_HUMAN	PP1B_HUMAN	Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Homo sapiens GN=PPP1CB PE=1 SV=3	100.000000	0.012500	37170.300000	2.000000	3.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.26620.26620.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26620"	GELNVDSLITR	NaN	D	L	98.700000	51.300000	54.200000	16.400000	Dimethyl (+28), Label:13C(6) (+6)	1249.700000	2.000000	0.000500	0.400000	4.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Ankyrin repeat and FYVE domain-containing protein 1 OS=Homo sapiens GN=ANKFY1	sp|Q9P2R3-2|ANFY1_HUMAN	ANFY1_HUMAN	Isoform 2 of Ankyrin repeat and FYVE domain-containing protein 1 OS=Homo sapiens GN=ANKFY1	99.600000	0.002500	128470.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.21752.21752.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21752"	GETALQLAIR	G[+28]ETALQLAIR	D	N	99.700000	68.900000	53.200000	48.000000	Dimethyl (+28)	1098.640000	2.000000	-0.000560	-0.510000	656.000000	665.000000	0.253900	0.554800	2.309800	0.426200	0.298500	0.700500	NaN	4.921629	NaN	0.319090	0.804913	4.016345	0.495798	0.405323	1.047163	NaN	2.096075	NaN	0.407444	1.102104	0.135945	0.163351	0.346097	1.000000	1.000000	0.008876	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	NUDT5_HUMAN	NUDT5_HUMAN	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	100.000000	0.025000	24309.800000	5.000000	12.000000	19.000000	Spectrum39497 scans:9470,	GETPEAAALR	G[+28]ETPEAAALR	D	E	99.000000	57.100000	48.600000	38.900000	Dimethyl (+28), Label:13C(6) (+6)	1047.570000	2.000000	0.000550	0.520000	102.000000	111.000000	0.630200	0.347000	0.544733	0.725700	0.489550	0.674650	1.708971	220.758757	38.999557	0.792007	0.503434	0.947198	0.844205	0.664743	1.008521	1.143010	94.019056	18.688689	0.926407	31.729077	0.013647	0.357435	0.040063	1.000000	1.000000	0.008861	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS PE=1 SV=5	SYEP_HUMAN	SYEP_HUMAN	Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS PE=1 SV=5	100.000000	0.006590	170575.200000	4.000000	4.000000	5.000000	Spectrum13307 scans:49073,	GFFICDQPYEPVSPY	G[+28]FFIC[+57]DQPYEPVSPY	R	S	99.700000	77.100000	44.500000	75.900000	Dimethyl (+28), Carbamidomethyl (+57)	1845.820000	2.000000	-0.005100	-2.700000	676.000000	690.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Glutathione reductase, mitochondrial OS=Homo sapiens GN=GSR	sp|P00390|GSHR_HUMAN	GSHR_HUMAN	Glutathione reductase, mitochondrial OS=Homo sapiens GN=GSR PE=1 SV=2	100.000000	0.005270	56239.400000	2.000000	3.000000	4.000000	Spectrum61004 scans:34535,	GFFQLEELPGR	G[+28]FFQLEELPGR	D	S	99.700000	80.200000	49.700000	60.000000	Dimethyl (+28)	1319.690000	2.000000	-0.001200	-0.910000	223.000000	233.000000	0.599267	0.295567	0.495067	0.713200	0.631600	0.885550	NaN	NaN	NaN	0.753131	0.428813	0.860836	0.829664	0.857628	1.323791	NaN	NaN	NaN	0.791398	0.643221	0.030758	0.204833	0.058805	0.317167	1.000000	0.129817	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Glutathione reductase, mitochondrial OS=Homo sapiens GN=GSR	sp|P00390|GSHR_HUMAN	GSHR_HUMAN	Glutathione reductase, mitochondrial OS=Homo sapiens GN=GSR PE=1 SV=2	99.900000	0.012500	56239.400000	1.000000	3.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.32516.32516.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32516"	GFFQLEELPGR	G[+28]FFQLEELPGR	D	S	99.700000	80.200000	53.800000	66.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1329.700000	2.000000	0.000490	0.370000	223.000000	233.000000	0.599267	0.295567	0.495067	0.713200	0.631600	0.885550	NaN	NaN	NaN	0.753131	0.428813	0.860836	0.829664	0.857628	1.323791	NaN	NaN	NaN	0.791398	0.643221	0.030758	0.204833	0.051215	0.317025	1.000000	0.129599	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Glutathione reductase, mitochondrial OS=Homo sapiens GN=GSR	sp|P00390|GSHR_HUMAN	GSHR_HUMAN	Glutathione reductase, mitochondrial OS=Homo sapiens GN=GSR PE=1 SV=2	99.900000	0.012500	56239.400000	1.000000	3.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.32506.32506.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32506"	GFFQLEELPGR	G[+28]FFQLEELPGR	D	S	99.700000	80.000000	54.200000	68.100000	Dimethyl (+28), Label:13C(6) (+6)	1325.710000	2.000000	-0.001100	-0.830000	223.000000	233.000000	0.599267	0.295567	0.495067	0.713200	0.631600	0.885550	NaN	NaN	NaN	0.753131	0.428813	0.860836	0.829664	0.857628	1.323791	NaN	NaN	NaN	0.791398	0.643221	0.030758	0.204833	0.051190	0.291300	1.000000	0.129526	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum12613 scans:46417,	GFGFVTFDDHD	G[+28]FGFVTFDDHD	R	P	99.400000	49.500000	40.200000	49.500000	Dimethyl (+28)	1283.540000	2.000000	-0.001800	-1.400000	154.000000	164.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4	RL13_HUMAN	RL13_HUMAN	60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4	100.000000	0.006590	24244.200000	3.000000	4.000000	5.000000	Spectrum11264 scans:40107,	GFSLEELR	G[+28]FSLEELR	R	V	99.000000	59.600000	48.100000	34.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	987.530000	2.000000	-0.000130	-0.130000	75.000000	82.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2	SYMC_HUMAN	SYMC_HUMAN	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2	100.000000	0.005270	101099.500000	3.000000	4.000000	4.000000	Spectrum12148 scans:43855,	GFVLQDTVEQLR	G[+28]FVLQDTVEQLR	R	C	99.700000	70.900000	51.100000	49.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1441.780000	2.000000	-0.002200	-1.500000	377.000000	388.000000	1.254600	1.120433	0.753133	2.200800	11.380000	3.719850	NaN	NaN	NaN	1.576725	1.625544	1.309569	2.560186	15.452509	5.560730	NaN	NaN	NaN	2.068456	8.539026	0.148585	0.397412	0.200384	1.000000	1.000000	0.129020	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2	SYMC_HUMAN	SYMC_HUMAN	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2	100.000000	0.005270	101099.500000	3.000000	4.000000	4.000000	Spectrum12147 scans:43854,	GFVLQDTVEQLR	G[+28]FVLQDTVEQLR	R	C	99.700000	79.700000	50.900000	64.700000	Dimethyl (+28)	1431.770000	2.000000	-0.002900	-2.000000	377.000000	388.000000	1.254600	1.120433	0.753133	2.200800	11.380000	3.719850	NaN	NaN	NaN	1.576725	1.625544	1.309569	2.560186	15.452509	5.560730	NaN	NaN	NaN	2.068456	8.539026	0.148585	0.397412	0.200306	0.589829	1.000000	0.128948	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Periodic tryptophan protein 1 homolog OS=Homo sapiens GN=PWP1 PE=2 SV=1	B4DJV5_HUMAN	B4DJV5_HUMAN	Periodic tryptophan protein 1 homolog OS=Homo sapiens GN=PWP1 PE=2 SV=1	97.700000	0.002500	49021.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.21057.21057.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21057"	GFVYNLDAR	G[+28]FVYNLDAR	D	S	99.400000	52.200000	51.600000	40.700000	Dimethyl (+28)	1081.560000	2.000000	0.000012	0.012000	303.000000	311.000000	1.018633	2.490400	2.207967	0.965300	0.673850	0.707100	NaN	NaN	NaN	1.280173	3.613115	3.839274	1.122932	0.914998	1.057030	NaN	NaN	NaN	1.201552	2.264057	0.041596	0.342100	0.151141	0.687767	1.000000	0.128733	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Transcription factor p65 (Fragment) OS=Homo sapiens GN=RELA PE=4 SV=1	E9PMD5_HUMAN	E9PMD5_HUMAN	Transcription factor p65 (Fragment) OS=Homo sapiens GN=RELA PE=4 SV=1	97.500000	0.002500	17850.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.20547.20547.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20547"	GFYEAELCPDR	G[+28]FYEAELC[+57]PDR	D	C	99.400000	50.100000	46.100000	47.600000	Dimethyl (+28), Carbamidomethyl (+57)	1383.610000	2.000000	-0.004200	-3.000000	98.000000	108.000000	3.712167	5.022267	0.460367	0.627250	0.428850	0.689350	NaN	NaN	NaN	4.665284	7.286391	0.800498	0.729679	0.582321	1.030496	NaN	NaN	NaN	2.697481	3.934356	0.401229	0.449230	0.426682	0.902622	1.000000	0.128661	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 3 of NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C	sp|Q9UNZ2|NSF1C_HUMAN	NSF1C_HUMAN	NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2	100.000000	0.007080	40555.200000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.39957.39957.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39957"	GGDEDIVTISQATPSSVSR	G[+28]GDEDIVTISQATPSSVSR	D	G	99.500000	68.900000	55.400000	58.600000	Dimethyl (+28)	1945.970000	2.000000	0.006000	3.100000	45.000000	63.000000	0.737233	0.245300	0.325767	NaN	6.096450	0.269600	NaN	NaN	NaN	0.926522	0.355885	0.566452	NaN	8.278159	0.403020	NaN	NaN	NaN	0.926522	4.317022	NaN	0.472648	NaN	0.949125	1.000000	0.128590	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5	sp|O15511|ARPC5_HUMAN	ARPC5_HUMAN	Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5 PE=1 SV=3	100.000000	0.004670	16302.600000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.27304.27304.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27304"	GGDGQAGPDEGEVDSCLR	G[+28]GDGQAGPDEGEVDSC[+57]LR	D	Q	98.700000	51.000000	44.700000	50.300000	Dimethyl (+28), Carbamidomethyl (+57)	1845.790000	2.000000	0.005100	2.800000	30.000000	47.000000	0.533433	0.161867	0.291300	NaN	NaN	NaN	NaN	NaN	NaN	0.670395	0.234839	0.506521	NaN	NaN	NaN	NaN	NaN	NaN	0.670395	0.234839	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.005010	62047.800000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.6246.6246.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6246"	GGGGGGGLGSGGSIR	G[+28]GGGGGGLGSGGSIR	S	S	99.700000	91.600000	51.600000	57.800000	Dimethyl (+28)	1172.590000	2.000000	0.000340	0.290000	15.000000	29.000000	0.717433	0.741167	1.894933	0.130300	0.161500	1.339250	1.061800	NaN	4.833871	0.901638	1.075297	3.294963	0.151578	0.219295	2.002018	0.710163	NaN	2.316404	0.587793	0.647296	0.120591	0.371925	0.312278	0.432355	0.830144	0.127738	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum6816 scans:27095,	GGGGNFGPGPGSNFR	G[+28]GGGNFGPGPGSNFR	R	G	99.700000	83.000000	47.100000	66.900000	Dimethyl (+28), Label:13C(6) (+6)	1410.670000	2.000000	-0.003500	-2.500000	214.000000	228.000000	92.178500	NaN	0.716133	0.473700	0.144000	0.223850	NaN	NaN	NaN	115.845796	NaN	1.245233	0.551054	0.195533	0.334629	NaN	NaN	NaN	58.198425	0.195533	0.464954	NaN	1.000000	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.023000	95322.100000	6.000000	7.000000	8.000000	Nsco_Tails_biological_replicate1_apoptosis.10501.10501.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10501"	GGGQIIPTAR	G[+28]GGQIIPTAR	R	R	99.100000	56.600000	52.500000	32.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1006.580000	2.000000	0.000900	0.890000	717.000000	726.000000	0.528900	0.236033	0.448333	1.012350	0.918150	0.566650	NaN	NaN	NaN	0.664698	0.342441	0.779575	1.177665	1.246724	0.847074	NaN	NaN	NaN	0.921181	0.794583	0.172875	0.329346	0.193321	0.784373	1.000000	0.127597	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum40820 scans:11008,	GGGQIIPTAR	G[+28]GGQIIPTAR	R	R	99.000000	51.900000	48.500000	21.600000	Dimethyl (+28)	996.570000	2.000000	-0.000180	-0.180000	717.000000	726.000000	0.528900	0.236033	0.448333	1.012350	0.918150	0.566650	NaN	NaN	NaN	0.664698	0.342441	0.779575	1.177665	1.246724	0.847074	NaN	NaN	NaN	0.921181	0.794583	0.172875	0.329346	0.193259	1.000000	1.000000	0.127246	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum40802 scans:10988,	GGGQIIPTAR	G[+28]GGQIIPTAR	R	R	99.600000	59.900000	48.400000	37.800000	Dimethyl (+28), Label:13C(6) (+6)	1002.590000	2.000000	-0.000470	-0.470000	717.000000	726.000000	0.528900	0.236033	0.448333	1.012350	0.918150	0.566650	NaN	NaN	NaN	0.664698	0.342441	0.779575	1.177665	1.246724	0.847074	NaN	NaN	NaN	0.921181	0.794583	0.172875	0.329346	0.193197	1.000000	1.000000	0.127176	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Fatty acid synthase OS=Homo sapiens GN=FASN PE=1 SV=3	FAS_HUMAN	FAS_HUMAN	Fatty acid synthase OS=Homo sapiens GN=FASN PE=1 SV=3	100.000000	0.005010	273409.100000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.11698.11698.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11698"	GGINPDSLR	G[+28]GINPDSLR	D	G	99.500000	53.500000	51.300000	40.800000	Dimethyl (+28)	955.510000	2.000000	-0.000130	-0.130000	93.000000	101.000000	0.796567	0.504000	0.843100	0.564750	0.335950	0.604750	0.489129	NaN	NaN	1.001089	0.731212	1.466006	0.656973	0.456175	0.904029	0.327143	NaN	NaN	0.661735	0.593693	0.076643	0.144906	0.458539	0.476611	0.563312	0.127106	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4	SERA_HUMAN	SERA_HUMAN	D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4	100.000000	0.010500	56632.600000	3.000000	5.000000	8.000000	Spectrum51855 scans:23714,	GGIVDEGALLR	G[+28]GIVDEGALLR	R	A	99.100000	53.700000	49.200000	32.600000	Dimethyl (+28)	1126.630000	2.000000	-0.000500	-0.440000	237.000000	247.000000	0.908467	0.371100	0.412200	1.031900	0.590100	0.572550	3.608829	NaN	1.087443	1.141720	0.538398	0.716745	1.200407	0.801276	0.855894	2.413690	NaN	0.521105	1.585272	0.669837	0.062084	0.123354	0.122613	0.144656	0.543887	0.126897	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum6898 scans:27293,	GGNFGFGDSR	G[+28]GNFGFGDSR	R	G	98.900000	46.800000	44.600000	41.400000	Dimethyl (+28), Label:13C(6) (+6)	1046.490000	2.000000	-0.000650	-0.620000	204.000000	213.000000	3.754033	0.700300	3.012867	1.915900	0.100600	0.139250	NaN	NaN	NaN	4.717900	1.016007	5.238857	2.228763	0.136601	0.208162	NaN	NaN	NaN	3.473331	0.576304	0.219041	0.414917	0.240377	0.486406	1.000000	0.126827	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum6959 scans:27443,	GGNFGFGDSR	G[+28]GNFGFGDSR	R	G	99.700000	73.000000	43.100000	56.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1050.480000	2.000000	-0.000011	-0.010000	204.000000	213.000000	3.754033	0.700300	3.012867	1.915900	0.100600	0.139250	NaN	NaN	NaN	4.717900	1.016007	5.238857	2.228763	0.136601	0.208162	NaN	NaN	NaN	3.473331	0.576304	0.219041	0.414917	0.240301	0.484605	1.000000	0.126758	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	TERA_HUMAN	TERA_HUMAN	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	100.000000	0.009330	89306.800000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.9244.9244.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9244"	GGNIGDGGGAADR	G[+28]GNIGDGGGAADR	R	V	99.700000	59.600000	48.000000	42.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1153.530000	2.000000	-0.001700	-1.500000	587.000000	599.000000	0.531900	0.281367	0.524700	NaN	NaN	NaN	NaN	NaN	NaN	0.668468	0.408212	0.912363	NaN	NaN	NaN	NaN	NaN	NaN	0.668468	0.408212	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	TERA_HUMAN	TERA_HUMAN	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	100.000000	0.009330	89306.800000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.9360.9360.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9360"	GGNIGDGGGAADR	G[+28]GNIGDGGGAADR	R	V	99.700000	79.600000	47.700000	61.400000	Dimethyl (+28)	1143.530000	2.000000	-0.002100	-1.800000	587.000000	599.000000	0.531900	0.281367	0.524700	NaN	NaN	NaN	NaN	NaN	NaN	0.668468	0.408212	0.912363	NaN	NaN	NaN	NaN	NaN	NaN	0.668468	0.408212	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	sp|Q07955-3|SRSF1_HUMAN	SRSF1_HUMAN	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	100.000000	0.017100	22442.200000	5.000000	9.000000	13.000000	Spectrum13141 scans:48891,	GGPPFAFVEFEDPR	G[+28]GPPFAFVEFEDPR	R	D	99.700000	41.900000	48.400000	27.500000	Dimethyl (+28)	1591.770000	3.000000	0.000220	0.140000	52.000000	65.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	PSB6_HUMAN	PSB6_HUMAN	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	100.000000	0.011900	25339.900000	5.000000	8.000000	9.000000	Spectrum21780 scans:6049,	GGVVLGADSR	G[+28]GVVLGADSR	D	T	99.700000	78.200000	47.900000	52.400000	Dimethyl (+28)	957.520000	2.000000	-0.000380	-0.400000	44.000000	53.000000	0.604367	0.289700	0.483767	0.702200	0.467700	0.667800	0.863457	1.598986	7.621943	0.759541	0.420302	0.841187	0.816868	0.635074	0.998281	0.577505	0.680993	3.652455	0.717971	0.578789	0.009950	0.018730	0.027250	0.041503	0.394318	0.008610	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	PSB6_HUMAN	PSB6_HUMAN	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	100.000000	0.025000	25339.900000	3.000000	5.000000	10.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.8155.8155.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8155"	GGVVLGADSR	G[+28]GVVLGADSR	D	T	99.700000	77.500000	51.800000	35.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	967.530000	2.000000	0.000470	0.480000	44.000000	53.000000	0.604367	0.289700	0.483767	0.702200	0.467700	0.667800	0.863457	1.598986	7.621943	0.759541	0.420302	0.841187	0.816868	0.635074	0.998281	0.577505	0.680993	3.652455	0.717971	0.578789	0.009950	0.018730	0.027229	0.063223	0.384701	0.008595	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction3A (Nsco_Tails_biological_replicate_3_fraction3A_127089)	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	PSB6_HUMAN	PSB6_HUMAN	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	99.200000	0.238000	25339.900000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction3A.6044.6044.2 File:"Nsco_Tails_biological_replicate_3_fraction3A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6044"	GGVVLGADSR	G[+28]GVVLGADSR	D	T	99.700000	71.900000	52.100000	49.800000	Dimethyl (+28), Label:13C(6) (+6)	963.540000	2.000000	-0.000230	-0.240000	44.000000	53.000000	0.604367	0.289700	0.483767	0.702200	0.467700	0.667800	0.863457	1.598986	7.621943	0.759541	0.420302	0.841187	0.816868	0.635074	0.998281	0.577505	0.680993	3.652455	0.717971	0.578789	0.009950	0.018730	0.010418	0.020791	0.375541	0.008591	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	sp|P11413-2|G6PD_HUMAN	G6PD_HUMAN	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	100.000000	0.022400	63810.100000	5.000000	10.000000	17.000000	Spectrum62840 scans:36769,	GGYFDEFGIIR	G[+28]GYFDEFGIIR	R	G	99.000000	53.700000	49.100000	42.300000	Dimethyl (+28), Label:13C(6) (+6)	1306.660000	2.000000	-0.001500	-1.100000	247.000000	257.000000	0.460267	0.907333	1.898567	2.460400	0.990700	0.422500	NaN	NaN	NaN	0.578442	1.316375	3.301281	2.862178	1.345237	0.631587	NaN	NaN	NaN	1.720310	1.330806	0.373050	0.006903	1.000000	0.007660	1.000000	0.125930	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	sp|P11413-2|G6PD_HUMAN	G6PD_HUMAN	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	100.000000	0.022400	63810.100000	5.000000	10.000000	17.000000	Spectrum62965 scans:36909,	GGYFDEFGIIR	G[+28]GYFDEFGIIR	R	G	99.100000	54.600000	48.300000	45.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1310.650000	2.000000	-0.001700	-1.300000	247.000000	257.000000	0.460267	0.907333	1.898567	2.460400	0.990700	0.422500	NaN	NaN	NaN	0.578442	1.316375	3.301281	2.862178	1.345237	0.631587	NaN	NaN	NaN	1.720310	1.330806	0.373050	0.006903	1.000000	0.007658	1.000000	0.125588	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	sp|P11413-2|G6PD_HUMAN	G6PD_HUMAN	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	100.000000	0.022400	63810.100000	5.000000	10.000000	17.000000	Spectrum62963 scans:36907,	GGYFDEFGIIR	G[+28]GYFDEFGIIR	R	G	99.600000	67.000000	48.300000	51.800000	Dimethyl (+28)	1300.650000	2.000000	0.000480	0.370000	247.000000	257.000000	0.460267	0.907333	1.898567	2.460400	0.990700	0.422500	NaN	NaN	NaN	0.578442	1.316375	3.301281	2.862178	1.345237	0.631587	NaN	NaN	NaN	1.720310	1.330806	0.373050	0.006903	1.000000	0.008816	1.000000	0.125180	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum48509 scans:19841,	GHVFEESQVAGTPM	G[+28]HVFEESQVAGTPM	R	F	99.700000	65.900000	46.000000	54.300000	Dimethyl (+28)	1515.700000	2.000000	-0.001700	-1.100000	768.000000	781.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum43335 scans:13892,	GHVFEESQVAGTPM	G[+28]HVFEESQVAGTPM	R	F	99.700000	77.800000	45.100000	63.700000	Dimethyl (+28), Oxidation (+16)	1531.700000	2.000000	-0.001800	-1.100000	768.000000	781.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.035100	99012.600000	6.000000	11.000000	14.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.28510.28510.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28510"	GIDSVIVVDNVPQVGPDR	G[+28]IDSVIVVDNVPQVGPDR	D	L	99.700000	92.500000	57.800000	78.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1916.030000	2.000000	0.002000	1.100000	182.000000	199.000000	NaN	NaN	NaN	0.816400	0.253550	0.310500	NaN	NaN	NaN	NaN	NaN	NaN	0.949716	0.344287	0.464160	NaN	NaN	NaN	0.949716	0.344287	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.035800	99012.600000	4.000000	8.000000	8.000000	Nsco_Tails_biological_replicate2_apoptosis.24680.24680.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24680"	GIDSVIVVDNVPQVGPDR	G[+28]IDSVIVVDNVPQVGPDR	D	L	99.700000	75.900000	57.700000	64.000000	Dimethyl (+28)	1906.020000	2.000000	0.001000	0.550000	182.000000	199.000000	NaN	NaN	NaN	0.816400	0.253550	0.310500	NaN	NaN	NaN	NaN	NaN	NaN	0.949716	0.344287	0.464160	NaN	NaN	NaN	0.949716	0.344287	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=1 SV=2	E9PEX6_HUMAN	E9PEX6_HUMAN	Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=4 SV=1	100.000000	0.007900	51797.700000	4.000000	4.000000	6.000000	Spectrum42206 scans:12586,	GIEMSEVR	G[+28]IEM[+16]SEVR	R	L	98.800000	47.400000	45.800000	22.500000	Dimethyl (+28), Oxidation (+16)	963.470000	2.000000	-0.000500	-0.510000	87.000000	94.000000	0.576267	0.525800	0.932467	0.594450	0.387100	0.829000	NaN	NaN	NaN	0.724226	0.762840	1.621399	0.691522	0.525630	1.239256	NaN	NaN	NaN	0.707874	0.644235	0.014703	0.115905	0.045840	0.258644	1.000000	0.124373	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.030300	53123.900000	9.000000	17.000000	23.000000	Spectrum54143 scans:26260,	GILFVGSGVSGGEEGAR	G[+28]ILFVGSGVSGGEEGAR	K	Y	99.700000	81.400000	51.600000	61.800000	Dimethyl (+28), Label:13C(6) (+6)	1624.850000	2.000000	0.001100	0.670000	120.000000	136.000000	0.391233	0.599700	1.739967	0.592550	0.443700	0.800500	NaN	NaN	NaN	0.491684	0.870055	3.025503	0.689312	0.602485	1.196651	NaN	NaN	NaN	0.590498	0.736270	0.105554	0.114430	0.328790	0.255187	1.000000	0.124039	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.030300	53123.900000	9.000000	17.000000	23.000000	Spectrum54133 scans:26249,	GILFVGSGVSGGEEGAR	G[+28]ILFVGSGVSGGEEGAR	K	Y	99.700000	98.900000	51.300000	73.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1628.840000	2.000000	0.003300	2.000000	120.000000	136.000000	0.391233	0.599700	1.739967	0.592550	0.443700	0.800500	NaN	NaN	NaN	0.491684	0.870055	3.025503	0.689312	0.602485	1.196651	NaN	NaN	NaN	0.590498	0.736270	0.105554	0.114430	0.157063	0.255023	1.000000	0.123575	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.030300	53123.900000	9.000000	17.000000	23.000000	Spectrum54192 scans:26314,	GILFVGSGVSGGEEGAR	G[+28]ILFVGSGVSGGEEGAR	K	Y	99.700000	81.000000	51.000000	65.200000	Dimethyl (+28)	1618.830000	2.000000	-0.001400	-0.850000	120.000000	136.000000	0.391233	0.599700	1.739967	0.592550	0.443700	0.800500	NaN	NaN	NaN	0.491684	0.870055	3.025503	0.689312	0.602485	1.196651	NaN	NaN	NaN	0.590498	0.736270	0.105554	0.114430	0.156996	0.254859	1.000000	0.123510	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	RL22_HUMAN	RL22_HUMAN	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	100.000000	0.014500	14769.300000	2.000000	10.000000	11.000000	Spectrum63818 scans:37859,	GIMDAANFEQFLQER	G[+28]IMDAANFEQFLQER	D	I	99.700000	49.400000	49.200000	40.000000	Dimethyl (+28), Oxidation (+16), Label:13C(6) (+6)	1817.870000	3.000000	0.001700	0.960000	32.000000	46.000000	0.604167	0.223233	0.373700	0.861500	0.355150	0.411850	NaN	NaN	NaN	0.759290	0.323871	0.649800	1.002181	0.482246	0.615666	NaN	NaN	NaN	0.880735	0.403058	0.087234	0.123502	1.000000	0.463298	1.000000	0.123444	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	RL22_HUMAN	RL22_HUMAN	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	100.000000	0.014500	14769.300000	2.000000	10.000000	11.000000	Spectrum69270 scans:44142,	GIMDAANFEQFLQER	G[+28]IMDAANFEQFLQER	D	I	99.700000	65.400000	49.700000	55.500000	Dimethyl (+28), Label:13C(6) (+6)	1801.880000	3.000000	-0.000900	-0.500000	32.000000	46.000000	0.604167	0.223233	0.373700	0.861500	0.355150	0.411850	NaN	NaN	NaN	0.759290	0.323871	0.649800	1.002181	0.482246	0.615666	NaN	NaN	NaN	0.880735	0.403058	0.087234	0.123502	0.087335	0.462798	1.000000	0.123378	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	RL22_HUMAN	RL22_HUMAN	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	100.000000	0.057600	14769.300000	4.000000	11.000000	23.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.41667.41667.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41667"	GIMDAANFEQFLQER	G[+28]IMDAANFEQFLQER	D	I	99.700000	92.700000	52.800000	81.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1805.860000	2.000000	-0.002100	-1.200000	32.000000	46.000000	0.604167	0.223233	0.373700	0.861500	0.355150	0.411850	NaN	NaN	NaN	0.759290	0.323871	0.649800	1.002181	0.482246	0.615666	NaN	NaN	NaN	0.880735	0.403058	0.087234	0.123502	0.593535	0.288781	1.000000	0.123312	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	RL22_HUMAN	RL22_HUMAN	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	100.000000	0.057600	14769.300000	4.000000	11.000000	23.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.41650.41650.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41650"	GIMDAANFEQFLQER	G[+28]IMDAANFEQFLQER	D	I	99.700000	112.000000	52.500000	111.000000	Dimethyl (+28)	1795.850000	2.000000	-0.001900	-1.100000	32.000000	46.000000	0.604167	0.223233	0.373700	0.861500	0.355150	0.411850	NaN	NaN	NaN	0.759290	0.323871	0.649800	1.002181	0.482246	0.615666	NaN	NaN	NaN	0.880735	0.403058	0.087234	0.123502	0.760560	0.200820	1.000000	0.123246	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	RL22_HUMAN	RL22_HUMAN	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	100.000000	0.067200	14769.300000	3.000000	11.000000	15.000000	Nsco_Tails_biological_replicate2_apoptosis.30720.30720.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30720"	GIMDAANFEQFLQER	G[+28]IMDAANFEQFLQER	D	I	99.700000	104.000000	52.000000	104.000000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1821.860000	2.000000	-0.001800	-0.960000	32.000000	46.000000	0.604167	0.223233	0.373700	0.861500	0.355150	0.411850	NaN	NaN	NaN	0.759290	0.323871	0.649800	1.002181	0.482246	0.615666	NaN	NaN	NaN	0.880735	0.403058	0.087234	0.123502	0.758654	0.200726	1.000000	0.123181	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	RL22_HUMAN	RL22_HUMAN	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	100.000000	0.067200	14769.300000	3.000000	11.000000	15.000000	Nsco_Tails_biological_replicate2_apoptosis.30701.30701.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30701"	GIMDAANFEQFLQER	G[+28]IMDAANFEQFLQER	D	I	99.700000	110.000000	51.700000	106.000000	Dimethyl (+28), Oxidation (+16)	1811.850000	2.000000	-0.001300	-0.740000	32.000000	46.000000	0.604167	0.223233	0.373700	0.861500	0.355150	0.411850	NaN	NaN	NaN	0.759290	0.323871	0.649800	1.002181	0.482246	0.615666	NaN	NaN	NaN	0.880735	0.403058	0.087234	0.123502	0.162656	0.200538	1.000000	0.123115	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	sp|P22234|PUR6_HUMAN	PUR6_HUMAN	Multifunctional protein ADE2 OS=Homo sapiens GN=PAICS PE=1 SV=3	100.000000	0.002880	47062.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.29355.29355.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29355"	GIPTVFVAVAGR	G[+28]IPTVFVAVAGR	D	S	98.900000	55.100000	53.900000	41.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1223.730000	2.000000	0.000063	0.052000	320.000000	331.000000	0.561300	0.167667	0.299267	0.748900	0.444300	0.593050	NaN	NaN	NaN	0.705417	0.243254	0.520373	0.871194	0.603300	0.886539	NaN	NaN	NaN	0.788305	0.423277	0.066694	0.256005	0.124290	0.501885	1.000000	0.123050	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	E9PBS1_HUMAN	E9PBS1_HUMAN	Phosphoribosylaminoimidazole-succinocarboxamide synthase (Fragment) OS=Homo sapiens GN=PAICS PE=4 SV=1	100.000000	0.030100	45634.200000	4.000000	9.000000	12.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.29709.29709.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29709"	GIPTVFVAVAGR	G[+28]IPTVFVAVAGR	D	S	99.000000	56.300000	53.900000	49.000000	Dimethyl (+28)	1213.720000	2.000000	0.003500	2.900000	320.000000	331.000000	0.561300	0.167667	0.299267	0.748900	0.444300	0.593050	NaN	NaN	NaN	0.705417	0.243254	0.520373	0.871194	0.603300	0.886539	NaN	NaN	NaN	0.788305	0.423277	0.066694	0.256005	0.167459	0.501602	1.000000	0.122984	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2	IF2B_HUMAN	IF2B_HUMAN	Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2	90.300000	0.002330	38371.700000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.43888.43888.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43888"	GISFSNQTGPAWAGSER	G[+28]ISFSNQTGPAWAGSER	D	D	98.800000	56.300000	52.000000	55.100000	Dimethyl (+28)	1791.850000	2.000000	-0.008600	-4.800000	156.000000	172.000000	1.425633	NaN	NaN	53.141550	275.929750	2.903650	NaN	NaN	NaN	1.791672	NaN	NaN	61.819456	374.675470	4.340608	NaN	NaN	NaN	31.805564	374.675470	0.387136	NaN	0.611732	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Fatty acid-binding protein, epidermal OS=Homo sapiens GN=FABP5 PE=1 SV=3	FABP5_HUMAN	FABP5_HUMAN	Fatty acid-binding protein, epidermal OS=Homo sapiens GN=FABP5 PE=1 SV=3	100.000000	0.016500	15146.400000	2.000000	4.000000	7.000000	NSco_TAILS_20150124_Protein_complex_100Kda.43944.43944.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43944"	GKLVVECVMNNVTCTR	G[+28]KLVVEC[+57]VMNNVTC[+57]TR	D	I	98.600000	58.900000	55.900000	53.600000	Dimethyl (+28), Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57)	1934.970000	3.000000	-0.002800	-1.500000	114.000000	129.000000	13.300667	5.430533	0.739867	NaN	NaN	NaN	NaN	NaN	NaN	16.715680	7.878712	1.286501	NaN	NaN	NaN	NaN	NaN	NaN	16.715680	7.878712	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4	RL10_HUMAN	RL10_HUMAN	60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4	99.700000	0.013200	24586.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction2A.1871.1871.3 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=1871"	GKPQGTVAR	G[+28]KPQGTVAR	F	V	98.800000	59.200000	52.000000	33.800000	Dimethyl (+28), Dimethyl (+28)	968.580000	3.000000	0.000002	0.001900	120.000000	128.000000	5.562300	3.712133	0.681600	1.659850	NaN	NaN	NaN	NaN	NaN	6.990449	5.385627	1.185185	1.930900	NaN	NaN	NaN	NaN	NaN	4.460674	5.385627	0.328431	NaN	0.441556	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum44273 scans:14984,	GLAEDIDKGEVSAR	G[+28]LAEDIDKGEVSAR	D	Q	99.700000	110.000000	51.600000	88.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1524.840000	2.000000	-0.002900	-1.900000	612.000000	625.000000	29.303633	13.598733	0.453900	710.160900	388.575000	0.545800	NaN	NaN	1.624286	36.827489	19.729277	0.789254	826.128719	527.632562	0.815906	NaN	NaN	0.778362	431.478104	273.680920	0.000000	0.000000	0.000000	0.000000	1.000000	0.122528	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.045100	95322.100000	5.000000	10.000000	18.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.14087.14087.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14087"	GLAEDIDKGEVSAR	G[+28]LAEDIDKGEVSAR	D	Q	99.700000	102.000000	55.700000	89.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1532.830000	2.000000	0.008700	5.700000	612.000000	625.000000	29.303633	13.598733	0.453900	710.160900	388.575000	0.545800	NaN	NaN	1.624286	36.827489	19.729277	0.789254	826.128719	527.632562	0.815906	NaN	NaN	0.778362	431.478104	273.680920	0.000000	0.000000	0.000000	0.000000	1.000000	0.122463	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.044800	95322.100000	6.000000	8.000000	10.000000	Nsco_Tails_biological_replicate2_apoptosis.12861.12861.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12861"	GLAEDIDKGEVSAR	G[+28]LAEDIDKGEVSAR	D	Q	99.700000	96.800000	54.700000	83.000000	Dimethyl (+28), Dimethyl (+28)	1514.790000	2.000000	-0.008800	-5.800000	612.000000	625.000000	29.303633	13.598733	0.453900	710.160900	388.575000	0.545800	NaN	NaN	1.624286	36.827489	19.729277	0.789254	826.128719	527.632562	0.815906	NaN	NaN	0.778362	431.478104	273.680920	0.000000	0.000000	0.000000	0.000000	1.000000	0.122205	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5	PYGB_HUMAN	PYGB_HUMAN	Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5	100.000000	0.009220	96680.300000	2.000000	5.000000	7.000000	Spectrum52327 scans:24256,	GLAGLGDVAEVR	G[+28]LAGLGDVAEVR	R	K	99.400000	65.900000	49.800000	51.400000	Dimethyl (+28)	1183.660000	2.000000	0.001200	0.990000	18.000000	29.000000	0.967400	3.295500	3.107200	0.664750	0.425900	0.161800	NaN	NaN	NaN	1.215785	4.781168	5.402886	0.773302	0.578315	0.241872	NaN	NaN	NaN	0.994544	2.679742	0.139350	0.423369	0.270288	1.000000	1.000000	0.122140	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5	PYGB_HUMAN	PYGB_HUMAN	Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5	100.000000	0.009220	96680.300000	2.000000	5.000000	7.000000	Spectrum52264 scans:24186,	GLAGLGDVAEVR	G[+28]LAGLGDVAEVR	R	K	99.700000	68.400000	49.800000	51.800000	Dimethyl (+28), Label:13C(6) (+6)	1189.680000	2.000000	-0.000890	-0.750000	18.000000	29.000000	0.967400	3.295500	3.107200	0.664750	0.425900	0.161800	NaN	NaN	NaN	1.215785	4.781168	5.402886	0.773302	0.578315	0.241872	NaN	NaN	NaN	0.994544	2.679742	0.139350	0.423369	0.272420	1.000000	1.000000	0.121947	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5	PYGB_HUMAN	PYGB_HUMAN	Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5	100.000000	0.009220	96680.300000	2.000000	5.000000	7.000000	Spectrum52287 scans:24212,	GLAGLGDVAEVR	G[+28]LAGLGDVAEVR	R	K	99.700000	69.900000	49.800000	47.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1193.660000	2.000000	-0.000250	-0.210000	18.000000	29.000000	0.967400	3.295500	3.107200	0.664750	0.425900	0.161800	NaN	NaN	NaN	1.215785	4.781168	5.402886	0.773302	0.578315	0.241872	NaN	NaN	NaN	0.994544	2.679742	0.139350	0.423369	0.272266	1.000000	1.000000	0.121883	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Rho GTPase-activating protein 5 OS=Homo sapiens GN=ARHGAP5	sp|Q13017-2|RHG05_HUMAN	RHG05_HUMAN	Isoform 2 of Rho GTPase-activating protein 5 OS=Homo sapiens GN=ARHGAP5	95.300000	0.002500	172318.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.27127.27127.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27127"	GLAQELANEIR	NaN	D	T	98.800000	50.200000	54.100000	21.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1250.690000	2.000000	-0.000490	-0.390000	605.000000	615.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Fatty acid synthase OS=Homo sapiens GN=FASN PE=1 SV=3	FAS_HUMAN	FAS_HUMAN	Fatty acid synthase OS=Homo sapiens GN=FASN PE=1 SV=3	100.000000	0.004480	273409.100000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.13201.13201.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13201"	GLAQQQTQLNLR	G[+28]LAQQQTQLNLR	D	S	99.700000	70.500000	55.300000	52.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1406.790000	2.000000	-0.000350	-0.250000	2209.000000	2220.000000	2.254300	0.491633	0.177600	0.632100	0.315950	0.421700	NaN	NaN	NaN	2.833103	0.713270	0.308816	0.735321	0.429018	0.630391	NaN	NaN	NaN	1.784212	0.571144	0.338335	0.155266	0.653324	0.660261	1.000000	0.121626	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	sp|P26368|U2AF2_HUMAN	U2AF2_HUMAN	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4	100.000000	0.011500	53483.100000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.24783.24783.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24783"	GLAVTPTPVPVVGSQMTR	G[+28]LAVTPTPVPVVGSQMTR	D	Q	99.700000	88.700000	57.800000	74.100000	Dimethyl (+28), Label:13C(6) (+6)	1843.050000	2.000000	0.012000	6.500000	129.000000	146.000000	0.737100	2.083167	2.655900	0.669500	0.717800	1.080950	NaN	NaN	NaN	0.926354	3.022294	4.618153	0.778828	0.974676	1.615891	NaN	NaN	NaN	0.852591	1.998485	0.054941	0.301397	0.106032	0.719785	1.000000	0.121435	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	sp|P26368|U2AF2_HUMAN	U2AF2_HUMAN	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4	100.000000	0.038200	53483.100000	5.000000	10.000000	29.000000	Spectrum51775 scans:23600,	GLAVTPTPVPVVGSQMTR	G[+28]LAVTPTPVPVVGSQMTR	D	Q	99.600000	66.800000	53.200000	53.900000	Dimethyl (+28), Oxidation (+16), Label:13C(6) (+6)	1859.030000	2.000000	-0.001600	-0.850000	129.000000	146.000000	0.737100	2.083167	2.655900	0.669500	0.717800	1.080950	NaN	NaN	NaN	0.926354	3.022294	4.618153	0.778828	0.974676	1.615891	NaN	NaN	NaN	0.852591	1.998485	0.054941	0.301397	0.778147	0.719290	1.000000	0.121371	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	sp|P26368|U2AF2_HUMAN	U2AF2_HUMAN	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4	100.000000	0.022500	53483.100000	3.000000	6.000000	9.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.25242.25242.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25242"	GLAVTPTPVPVVGSQMTR	G[+28]LAVTPTPVPVVGSQMTR	D	Q	99.700000	93.300000	57.700000	76.500000	Dimethyl (+28)	1837.010000	2.000000	0.000750	0.410000	129.000000	146.000000	0.737100	2.083167	2.655900	0.669500	0.717800	1.080950	NaN	NaN	NaN	0.926354	3.022294	4.618153	0.778828	0.974676	1.615891	NaN	NaN	NaN	0.852591	1.998485	0.054941	0.301397	0.774984	0.652839	1.000000	0.121307	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	sp|P26368|U2AF2_HUMAN	U2AF2_HUMAN	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4	100.000000	0.040300	53483.100000	4.000000	8.000000	9.000000	Nsco_Tails_biological_replicate2_apoptosis.18688.18688.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18688"	GLAVTPTPVPVVGSQMTR	G[+28]LAVTPTPVPVVGSQMTR	D	Q	99.700000	67.000000	57.700000	55.300000	Dimethyl (+28), Oxidation (+16)	1853.010000	2.000000	-0.002600	-1.400000	129.000000	146.000000	0.737100	2.083167	2.655900	0.669500	0.717800	1.080950	NaN	NaN	NaN	0.926354	3.022294	4.618153	0.778828	0.974676	1.615891	NaN	NaN	NaN	0.852591	1.998485	0.054941	0.301397	0.771846	0.652431	1.000000	0.121244	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	sp|P26368|U2AF2_HUMAN	U2AF2_HUMAN	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4	100.000000	0.040300	53483.100000	4.000000	8.000000	9.000000	Nsco_Tails_biological_replicate2_apoptosis.21925.21925.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21925"	GLAVTPTPVPVVGSQMTR	G[+28]LAVTPTPVPVVGSQMTR	D	Q	99.700000	88.400000	57.800000	78.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1847.020000	2.000000	-0.001400	-0.740000	129.000000	146.000000	0.737100	2.083167	2.655900	0.669500	0.717800	1.080950	NaN	NaN	NaN	0.926354	3.022294	4.618153	0.778828	0.974676	1.615891	NaN	NaN	NaN	0.852591	1.998485	0.054941	0.301397	0.058823	0.652025	1.000000	0.121117	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein FAM192A (Fragment) OS=Homo sapiens GN=FAM192A PE=4 SV=1	H3BMX9_HUMAN	H3BMX9_HUMAN	Protein FAM192A (Fragment) OS=Homo sapiens GN=FAM192A PE=4 SV=1	100.000000	0.001320	19800.500000	1.000000	1.000000	1.000000	Spectrum60712 scans:34137,	GLDEDETNFLDEVSR	G[+28]LDEDETNFLDEVSR	R	Q	99.700000	98.400000	45.500000	87.400000	Dimethyl (+28)	1765.800000	2.000000	-0.001700	-0.960000	81.000000	95.000000	NaN	NaN	0.335367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.583145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Protein FAM192A (Fragment) OS=Homo sapiens GN=FAM192A PE=4 SV=1	H3BMX9_HUMAN	H3BMX9_HUMAN	Protein FAM192A (Fragment) OS=Homo sapiens GN=FAM192A PE=4 SV=1	100.000000	0.006940	19800.500000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction6A.34147.34147.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34147"	GLDEDETNFLDEVSR	G[+28]LDEDETNFLDEVSR	R	Q	99.700000	106.000000	49.400000	99.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1775.810000	2.000000	-0.003700	-2.100000	81.000000	95.000000	NaN	NaN	0.335367	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.583145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	XRCC5_HUMAN	XRCC5_HUMAN	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	100.000000	0.015000	82689.100000	3.000000	5.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.36191.36191.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36191"	GLDEIYSFSESLR	G[+28]LDEIYSFSESLR	D	K	99.700000	75.500000	53.700000	53.700000	Dimethyl (+28), Label:13C(6) (+6)	1548.770000	2.000000	-0.002000	-1.300000	220.000000	232.000000	3.918600	9.351767	2.693633	0.821750	0.815300	0.992550	NaN	NaN	NaN	4.924720	13.567705	4.683765	0.955940	1.107068	1.483743	NaN	NaN	NaN	2.940330	7.337386	0.377943	0.429808	1.000000	1.000000	1.000000	0.120801	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	XRCC5_HUMAN	XRCC5_HUMAN	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	100.000000	0.015000	82689.100000	3.000000	5.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.36275.36275.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36275"	GLDEIYSFSESLR	G[+28]LDEIYSFSESLR	D	K	99.700000	83.700000	52.800000	65.000000	Dimethyl (+28)	1542.760000	2.000000	0.000150	0.097000	220.000000	232.000000	3.918600	9.351767	2.693633	0.821750	0.815300	0.992550	NaN	NaN	NaN	4.924720	13.567705	4.683765	0.955940	1.107068	1.483743	NaN	NaN	NaN	2.940330	7.337386	0.377943	0.429808	0.687350	0.909410	1.000000	0.120738	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	XRCC5_HUMAN	XRCC5_HUMAN	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	100.000000	0.026900	82689.100000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.30917.30917.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30917"	GLDEIYSFSESLR	G[+28]LDEIYSFSESLR	D	K	99.700000	71.800000	52.900000	55.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1552.760000	2.000000	-0.002000	-1.300000	220.000000	232.000000	3.918600	9.351767	2.693633	0.821750	0.815300	0.992550	NaN	NaN	NaN	4.924720	13.567705	4.683765	0.955940	1.107068	1.483743	NaN	NaN	NaN	2.940330	7.337386	0.377943	0.429808	1.000000	1.000000	1.000000	0.120612	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Exportin-7 OS=Homo sapiens GN=XPO7 PE=1 SV=3	XPO7_HUMAN	XPO7_HUMAN	Exportin-7 OS=Homo sapiens GN=XPO7 PE=1 SV=3	100.000000	0.005010	123894.800000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46097.46097.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46097"	GLEDPLEDTGLVQQQLDQLSTIGR	G[+28]LEDPLEDTGLVQQQLDQLSTIGR	D	C	99.300000	78.800000	59.700000	76.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2662.360000	3.000000	-0.011000	-4.300000	428.000000	451.000000	0.923800	3.046300	NaN	0.651400	0.408750	0.647450	NaN	NaN	NaN	1.160990	4.419625	NaN	0.757772	0.555027	0.967860	NaN	NaN	NaN	0.959381	2.487326	0.131864	0.420468	0.403854	1.000000	1.000000	0.120486	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Exportin-7 OS=Homo sapiens GN=XPO7 PE=1 SV=3	XPO7_HUMAN	XPO7_HUMAN	Exportin-7 OS=Homo sapiens GN=XPO7 PE=1 SV=3	100.000000	0.008960	123894.800000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.38769.38769.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38769"	GLEDPLEDTGLVQQQLDQLSTIGR	G[+28]LEDPLEDTGLVQQQLDQLSTIGR	D	C	99.700000	96.600000	59.900000	92.400000	Dimethyl (+28)	2652.360000	3.000000	-0.001300	-0.500000	428.000000	451.000000	0.923800	3.046300	NaN	0.651400	0.408750	0.647450	NaN	NaN	NaN	1.160990	4.419625	NaN	0.757772	0.555027	0.967860	NaN	NaN	NaN	0.959381	2.487326	0.131864	0.420468	0.403498	1.000000	1.000000	0.120423	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	sp|P32119|PRDX2_HUMAN	PRDX2_HUMAN	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	100.000000	0.013200	21874.400000	3.000000	6.000000	10.000000	Spectrum57791 scans:30568,	GLFIIDGKGVLR	G[+28]LFIIDGKGVLR	R	Q	99.600000	39.200000	46.300000	25.300000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1352.880000	3.000000	0.002300	1.700000	128.000000	139.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	sp|P32119|PRDX2_HUMAN	PRDX2_HUMAN	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	100.000000	0.013200	21874.400000	3.000000	6.000000	10.000000	Spectrum57807 scans:30586,	GLFIIDGKGVLR	G[+28]LFIIDGKGVLR	R	Q	99.700000	40.500000	48.000000	23.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1360.860000	3.000000	0.001500	1.100000	128.000000	139.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	THIC_HUMAN	THIC_HUMAN	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	100.000000	0.027700	41332.400000	4.000000	8.000000	21.000000	Spectrum51374 scans:23128,	GLIEVKTDEFPR	G[+28]LIEVKTDEFPR	K	H	99.400000	38.300000	51.400000	24.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1476.830000	3.000000	0.001100	0.720000	212.000000	223.000000	48.091867	13.699900	5.393267	1.189000	2.072350	0.382100	NaN	NaN	NaN	60.439697	19.876052	9.377963	1.383161	2.813972	0.571194	NaN	NaN	NaN	30.911429	11.345012	0.412500	0.325373	0.962593	0.808770	1.000000	0.120048	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	DnaJ homolog subfamily C member 9 OS=Homo sapiens GN=DNAJC9 PE=1 SV=1	DNJC9_HUMAN	DNJC9_HUMAN	DnaJ homolog subfamily C member 9 OS=Homo sapiens GN=DNAJC9 PE=1 SV=1	97.400000	0.005760	29892.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.46173.46173.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46173"	GLLDLCEEVFGTADLYR	G[+28]LLDLC[+57]EEVFGTADLYR	M	V	99.700000	84.900000	54.900000	77.300000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2007.980000	2.000000	-0.004700	-2.300000	2.000000	18.000000	0.535700	0.427700	0.798500	NaN	1.093300	NaN	NaN	NaN	NaN	0.673244	0.620515	1.388454	NaN	1.484554	NaN	NaN	NaN	NaN	0.673244	1.052534	NaN	0.247956	NaN	0.615896	1.000000	0.119986	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glutamate--cysteine ligase catalytic subunit OS=Homo sapiens GN=GCLC PE=1 SV=2	GSH1_HUMAN	GSH1_HUMAN	Glutamate--cysteine ligase catalytic subunit OS=Homo sapiens GN=GCLC PE=1 SV=2	100.000000	0.003950	72749.800000	2.000000	3.000000	3.000000	Spectrum54568 scans:26739,	GLLSQGSPLSWEETKR	G[+28]LLSQGSPLSWEETKR	M	H	99.700000	77.900000	53.100000	61.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1861.010000	3.000000	0.000600	0.320000	2.000000	17.000000	25.496533	19.664067	0.756933	29.509500	29.495500	0.980200	NaN	NaN	NaN	32.042897	28.528968	1.316177	34.328341	40.050920	1.465281	NaN	NaN	NaN	33.185619	34.289944	0.000000	0.000000	0.000000	0.000000	1.000000	0.119924	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Glutamate--cysteine ligase catalytic subunit OS=Homo sapiens GN=GCLC PE=1 SV=2	GSH1_HUMAN	GSH1_HUMAN	Glutamate--cysteine ligase catalytic subunit OS=Homo sapiens GN=GCLC PE=1 SV=2	96.400000	0.013400	72749.800000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.21806.21806.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21806"	GLLSQGSPLSWEETKR	G[+28]LLSQGSPLSWEETKR	M	H	99.100000	78.200000	57.900000	60.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1853.030000	3.000000	-0.001200	-0.670000	2.000000	17.000000	25.496533	19.664067	0.756933	29.509500	29.495500	0.980200	NaN	NaN	NaN	32.042897	28.528968	1.316177	34.328341	40.050920	1.465281	NaN	NaN	NaN	33.185619	34.289944	0.000000	0.000000	0.000000	0.000000	1.000000	0.119614	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Glutamate--cysteine ligase catalytic subunit OS=Homo sapiens GN=GCLC PE=1 SV=2	GSH1_HUMAN	GSH1_HUMAN	Glutamate--cysteine ligase catalytic subunit OS=Homo sapiens GN=GCLC PE=1 SV=2	100.000000	0.004630	72749.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction6A.26722.26722.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26722"	GLLSQGSPLSWEETKR	G[+28]LLSQGSPLSWEETKR	M	H	99.200000	76.100000	57.400000	67.700000	Dimethyl (+28), Dimethyl (+28)	1842.980000	3.000000	0.000350	0.190000	2.000000	17.000000	25.496533	19.664067	0.756933	29.509500	29.495500	0.980200	NaN	NaN	NaN	32.042897	28.528968	1.316177	34.328341	40.050920	1.465281	NaN	NaN	NaN	33.185619	34.289944	0.000000	0.000000	0.000000	0.000000	1.000000	0.119552	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	PYR1_HUMAN	PYR1_HUMAN	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	100.000000	0.021100	242964.500000	6.000000	12.000000	16.000000	Spectrum19490 scans:12830,	GLPVTCEVAPH	G[+28]LPVTC[+57]EVAPH	R	H	99.000000	55.800000	48.100000	46.400000	Dimethyl (+28), Carbamidomethyl (+57)	1206.610000	2.000000	0.000430	0.360000	1631.000000	1641.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1	NP1L1_HUMAN	NP1L1_HUMAN	Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1	99.800000	0.015000	45357.000000	1.000000	3.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.31020.31020.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31020"	GLVETPTGYIESLPR	G[+28]LVETPTGYIESLPR	D	V	99.700000	97.900000	56.700000	73.500000	Dimethyl (+28), Label:13C(6) (+6)	1664.910000	2.000000	-0.000540	-0.320000	58.000000	72.000000	0.561767	0.515667	0.918433	0.698250	1.032000	1.477850	NaN	4.373214	NaN	0.706003	0.748138	1.596998	0.812273	1.401317	2.209208	NaN	1.862510	NaN	0.759138	1.337322	0.044487	0.053767	0.066139	0.119673	1.000000	0.008134	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1	NP1L1_HUMAN	NP1L1_HUMAN	Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1	99.800000	0.015000	45357.000000	1.000000	3.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.31021.31021.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31021"	GLVETPTGYIESLPR	G[+28]LVETPTGYIESLPR	D	V	99.700000	97.800000	56.300000	80.400000	Dimethyl (+28)	1658.890000	2.000000	-0.001000	-0.620000	58.000000	72.000000	0.561767	0.515667	0.918433	0.698250	1.032000	1.477850	NaN	4.373214	NaN	0.706003	0.748138	1.596998	0.812273	1.401317	2.209208	NaN	1.862510	NaN	0.759138	1.337322	0.044487	0.053767	0.066111	0.119597	1.000000	0.008130	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleoside diphosphate kinase OS=Homo sapiens GN=NME1-NME2 PE=2 SV=1	sp|P22392-2|NDKB_HUMAN	NDKB_HUMAN	Isoform 3 of Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2	100.000000	0.048700	30119.300000	6.000000	14.000000	37.000000	Spectrum45511 scans:16382,	GLVGEIIKR	G[+28]LVGEIIKR	R	F	99.200000	50.400000	45.400000	32.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1057.700000	2.000000	-0.000430	-0.400000	19.000000	27.000000	160.058033	84.260400	0.528033	1.110650	0.391550	0.556750	NaN	NaN	NaN	201.153743	122.246445	0.918159	1.292017	0.531672	0.832274	NaN	NaN	NaN	101.222880	61.389059	0.418201	0.466185	1.000000	1.000000	1.000000	0.119183	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleoside diphosphate kinase OS=Homo sapiens GN=NME1-NME2 PE=2 SV=1	sp|P22392-2|NDKB_HUMAN	NDKB_HUMAN	Isoform 3 of Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2	100.000000	0.048700	30119.300000	6.000000	14.000000	37.000000	Spectrum45516 scans:16388,	GLVGEIIKR	G[+28]LVGEIIKR	R	F	99.700000	64.200000	43.300000	44.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1049.720000	2.000000	-0.000620	-0.590000	19.000000	27.000000	160.058033	84.260400	0.528033	1.110650	0.391550	0.556750	NaN	NaN	NaN	201.153743	122.246445	0.918159	1.292017	0.531672	0.832274	NaN	NaN	NaN	101.222880	61.389059	0.418201	0.466185	1.000000	1.000000	1.000000	0.118754	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 4 of Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5	sp|Q96P11|NSUN5_HUMAN	NSUN5_HUMAN	Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2	98.900000	0.007510	46674.600000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.49595.49595.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=49595"	GLYAAAAGVLAGVESR	G[+28]LYAAAAGVLAGVESR	M	Q	99.700000	93.300000	55.400000	74.100000	Acetyl (+42)	1545.820000	2.000000	0.000065	0.042000	2.000000	17.000000	1.774167	2.402267	2.214500	0.592750	0.106850	0.180700	NaN	NaN	NaN	2.229693	3.485250	3.850635	0.689545	0.145088	0.270125	NaN	NaN	NaN	1.459619	1.815169	0.309061	0.473513	0.887783	1.000000	1.000000	0.118450	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 4 of Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5	sp|Q96P11|NSUN5_HUMAN	NSUN5_HUMAN	Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2	98.900000	0.007510	46674.600000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.49590.49590.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=49590"	GLYAAAAGVLAGVESR	G[+28]LYAAAAGVLAGVESR	M	Q	99.700000	114.000000	55.600000	102.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1555.830000	2.000000	0.002000	1.300000	2.000000	17.000000	1.774167	2.402267	2.214500	0.592750	0.106850	0.180700	NaN	NaN	NaN	2.229693	3.485250	3.850635	0.689545	0.145088	0.270125	NaN	NaN	NaN	1.459619	1.815169	0.309061	0.473513	0.887048	1.000000	1.000000	0.118390	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 4 of Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5	sp|Q96P11-4|NSUN5_HUMAN	NSUN5_HUMAN	Isoform 4 of Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5	98.900000	0.007510	51043.400000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.34328.34328.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34328"	GLYAAAAGVLAGVESR	G[+28]LYAAAAGVLAGVESR	M	Q	99.700000	61.400000	56.000000	44.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1541.840000	2.000000	0.000015	0.009800	2.000000	17.000000	1.774167	2.402267	2.214500	0.592750	0.106850	0.180700	NaN	NaN	NaN	2.229693	3.485250	3.850635	0.689545	0.145088	0.270125	NaN	NaN	NaN	1.459619	1.815169	0.309061	0.473513	0.814925	1.000000	1.000000	0.118329	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 4 of Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5	sp|Q96P11|NSUN5_HUMAN	NSUN5_HUMAN	Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2	98.900000	0.008960	46674.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.29476.29476.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29476"	GLYAAAAGVLAGVESR	G[+28]LYAAAAGVLAGVESR	M	Q	99.000000	76.500000	55.900000	60.100000	Dimethyl (+28)	1531.840000	3.000000	0.002300	1.500000	2.000000	17.000000	1.774167	2.402267	2.214500	0.592750	0.106850	0.180700	NaN	NaN	NaN	2.229693	3.485250	3.850635	0.689545	0.145088	0.270125	NaN	NaN	NaN	1.459619	1.815169	0.309061	0.473513	0.515845	1.000000	1.000000	0.117907	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Translationally-controlled tumor protein OS=Homo sapiens GN=TPT1 PE=1 SV=1	TCTP_HUMAN	TCTP_HUMAN	Translationally-controlled tumor protein OS=Homo sapiens GN=TPT1 PE=1 SV=1	100.000000	0.008640	19578.200000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.28021.28021.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28021"	GMVALLDYR	G[+28]MVALLDYR	D	E	98.800000	50.500000	52.200000	35.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1074.580000	2.000000	-0.002000	-1.900000	144.000000	152.000000	0.617100	0.354200	0.573600	16.303950	10.754600	0.660250	NaN	NaN	NaN	0.775544	0.513879	0.997392	18.966352	14.603300	0.986995	NaN	NaN	NaN	9.870948	7.558590	0.450726	0.467314	0.751932	0.739098	1.000000	0.117847	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Translationally-controlled tumor protein OS=Homo sapiens GN=TPT1 PE=1 SV=1	TCTP_HUMAN	TCTP_HUMAN	Translationally-controlled tumor protein OS=Homo sapiens GN=TPT1 PE=1 SV=1	100.000000	0.002360	19578.200000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.52138.52138.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=52138"	GMVALLDYR	G[+28]MVALLDYR	D	E	99.700000	67.700000	52.400000	35.700000	Dimethyl (+28)	1064.570000	2.000000	0.002200	2.100000	144.000000	152.000000	0.617100	0.354200	0.573600	16.303950	10.754600	0.660250	NaN	NaN	NaN	0.775544	0.513879	0.997392	18.966352	14.603300	0.986995	NaN	NaN	NaN	9.870948	7.558590	0.450726	0.467314	1.000000	1.000000	1.000000	0.117667	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.031600	50123.200000	9.000000	17.000000	24.000000	Spectrum69004 scans:43822,	GNASGTTLLEALDCILPPTRPTDKPLR	G[+28]NASGTTLLEALDC[+57]ILPPTRPTDKPLR	D	L	99.700000	49.200000	56.800000	44.200000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2977.650000	4.000000	-0.007400	-2.500000	221.000000	247.000000	38.297933	16.163700	0.412800	159.136850	70.575800	0.425150	NaN	NaN	NaN	48.131121	23.450575	0.717788	185.123571	95.832439	0.635548	NaN	NaN	NaN	116.627346	59.641507	0.000000	0.000000	0.000000	0.000000	1.000000	0.117488	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	HTSF1_HUMAN	HTSF1_HUMAN	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	100.000000	0.030100	85836.600000	4.000000	8.000000	12.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.14230.14230.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14230"	GNDEFDEQLR	G[+28]NDEFDEQLR	D	M	99.700000	87.000000	46.500000	69.000000	Dimethyl (+28)	1249.560000	2.000000	-0.001600	-1.300000	8.000000	17.000000	0.595067	0.077467	0.127400	0.742800	0.172400	0.231550	NaN	NaN	NaN	0.747853	0.112390	0.221527	0.864098	0.234096	0.346139	NaN	NaN	NaN	0.805975	0.173243	0.045830	0.215047	0.367275	0.960378	1.000000	0.117428	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	HTSF1_HUMAN	HTSF1_HUMAN	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	100.000000	0.035800	85836.600000	5.000000	8.000000	8.000000	Nsco_Tails_biological_replicate2_apoptosis.12928.12928.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12928"	GNDEFDEQLR	G[+28]NDEFDEQLR	D	M	99.700000	86.400000	46.900000	68.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1259.570000	2.000000	-0.000490	-0.390000	8.000000	17.000000	0.595067	0.077467	0.127400	0.742800	0.172400	0.231550	NaN	NaN	NaN	0.747853	0.112390	0.221527	0.864098	0.234096	0.346139	NaN	NaN	NaN	0.805975	0.173243	0.045830	0.215047	0.058532	0.959143	1.000000	0.117369	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26	sp|Q9H7D7-2|WDR26_HUMAN	WDR26_HUMAN	Isoform 2 of WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26	99.900000	0.002500	70442.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.31245.31245.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31245"	GNLLDSWEGVR	G[+28]NLLDSWEGVR	D	V	99.700000	88.000000	53.200000	66.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1282.670000	2.000000	0.011000	8.400000	461.000000	471.000000	4.063200	6.774800	1.227633	0.798400	0.455800	0.580350	NaN	NaN	NaN	5.106447	9.828997	2.134643	0.928777	0.618915	0.867554	NaN	NaN	NaN	3.017612	5.223956	0.385462	0.459966	0.492109	1.000000	1.000000	0.117190	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26	sp|Q9H7D7|WDR26_HUMAN	WDR26_HUMAN	WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3	99.900000	0.008960	72106.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.27013.27013.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27013"	GNLLDSWEGVR	G[+28]NLLDSWEGVR	D	V	99.300000	55.800000	52.700000	45.500000	Dimethyl (+28)	1272.650000	2.000000	0.000054	0.043000	477.000000	487.000000	4.063200	6.774800	1.227633	0.798400	0.455800	0.580350	NaN	NaN	NaN	5.106447	9.828997	2.134643	0.928777	0.618915	0.867554	NaN	NaN	NaN	3.017612	5.223956	0.385462	0.459966	0.434552	1.000000	1.000000	0.116482	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens PE=3 SV=2	RUXGL_HUMAN	RUXGL_HUMAN	Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens PE=3 SV=2	96.500000	0.002360	8526.300000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.60360.60360.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=60360"	GNSIIMLEALER	G[+28]NSIIMLEALER	R	-	99.500000	72.200000	54.800000	54.700000	Dimethyl (+28)	1372.750000	2.000000	0.006900	5.000000	64.000000	75.000000	0.470467	0.257800	0.549267	3.523100	8.833050	2.518300	NaN	NaN	NaN	0.591261	0.374021	0.955080	4.098415	11.994093	3.764556	NaN	NaN	NaN	2.344838	6.184057	0.408787	0.476200	0.460698	1.000000	1.000000	0.116423	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.004670	26545.800000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.60692.60692.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=60692"	GNVGVVLF	G[+28]NVGVVLF	R	N	98.800000	53.900000	50.900000	18.600000	Dimethyl (+28)	831.490000	2.000000	-0.000022	-0.026000	195.000000	202.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.035600	26545.800000	9.000000	20.000000	27.000000	Spectrum71781 scans:47648,	GNVGVVLFNF	NaN	R	G	98.800000	50.700000	49.100000	18.200000	Dimethyl (+28)	1092.600000	2.000000	-0.000360	-0.330000	195.000000	204.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.035600	26545.800000	9.000000	20.000000	27.000000	Spectrum64882 scans:39045,	GNVGVVLFNFGKEKF	G[+28]NVGVVLFNFGKEKF	R	E	99.700000	48.200000	52.300000	43.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1754.010000	3.000000	0.000740	0.420000	195.000000	209.000000	0.290333	0.078700	NaN	2.288250	0.580250	0.123200	NaN	NaN	NaN	0.364878	0.114179	NaN	2.661917	0.787901	0.184169	NaN	NaN	NaN	1.513397	0.451040	0.413277	0.408382	0.671067	1.000000	1.000000	0.115378	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	SPEE_HUMAN	SPEE_HUMAN	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	100.000000	0.054000	33806.500000	4.000000	9.000000	41.000000	Spectrum37172 scans:6734,	GPAASGPAAIR	G[+28]PAASGPAAIR	D	E	99.400000	56.700000	49.000000	32.100000	Dimethyl (+28), Label:13C(6) (+6)	1000.580000	2.000000	-0.000470	-0.470000	7.000000	17.000000	0.540200	0.367467	0.679800	0.778100	3.887400	5.465600	NaN	NaN	NaN	0.678899	0.533127	1.182055	0.905162	5.278566	8.170416	NaN	NaN	NaN	0.792031	2.905847	0.090322	0.435920	0.346701	0.524312	1.000000	0.115321	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	SPEE_HUMAN	SPEE_HUMAN	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	100.000000	0.023300	33806.500000	3.000000	7.000000	10.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.14925.14925.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14925"	GPAASGPAAIR	G[+28]PAASGPAAIR	D	E	99.300000	56.500000	52.400000	27.700000	Dimethyl (+28)	994.560000	2.000000	-0.000350	-0.350000	7.000000	17.000000	0.540200	0.367467	0.679800	0.778100	3.887400	5.465600	NaN	NaN	NaN	0.678899	0.533127	1.182055	0.905162	5.278566	8.170416	NaN	NaN	NaN	0.792031	2.905847	0.090322	0.435920	0.346318	0.852192	1.000000	0.114806	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Sorting nexin-6 (Fragment) OS=Homo sapiens GN=SNX6 PE=4 SV=1	G3V5X9_HUMAN	G3V5X9_HUMAN	Sorting nexin-6 (Fragment) OS=Homo sapiens GN=SNX6 PE=4 SV=1	98.200000	0.008960	26949.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.15656.15656.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15656"	GPDFLSEEDR	G[+28]PDFLSEEDR	D	G	99.100000	51.400000	47.300000	42.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1201.550000	2.000000	-0.003800	-3.200000	20.000000	29.000000	1.643533	1.532667	0.703567	0.401800	0.351200	0.887600	NaN	NaN	NaN	2.065519	2.223619	1.223381	0.467413	0.476882	1.326856	NaN	NaN	NaN	1.266466	1.350251	0.358323	0.365506	1.000000	0.714137	1.000000	0.114692	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Sorting nexin-6 (Fragment) OS=Homo sapiens GN=SNX6 PE=4 SV=1	G3V5X9_HUMAN	G3V5X9_HUMAN	Sorting nexin-6 (Fragment) OS=Homo sapiens GN=SNX6 PE=4 SV=1	98.200000	0.008960	26949.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.15626.15626.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15626"	GPDFLSEEDR	G[+28]PDFLSEEDR	D	G	99.600000	51.800000	47.200000	41.200000	Dimethyl (+28)	1191.540000	2.000000	-0.001300	-1.100000	20.000000	29.000000	1.643533	1.532667	0.703567	0.401800	0.351200	0.887600	NaN	NaN	NaN	2.065519	2.223619	1.223381	0.467413	0.476882	1.326856	NaN	NaN	NaN	1.266466	1.350251	0.358323	0.365506	1.000000	0.580993	1.000000	0.114635	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	sp|P28074|PSB5_HUMAN	PSB5_HUMAN	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	100.000000	0.008640	28463.000000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.17222.17222.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17222"	GPGLYYVDSEGNR	G[+28]PGLYYVDSEGNR	R	I	99.100000	54.500000	50.500000	49.500000	Dimethyl (+28)	1453.690000	2.000000	0.001600	1.100000	167.000000	179.000000	0.587667	1.094200	2.630967	10.107250	139.384700	8.093400	NaN	NaN	NaN	0.738553	1.587484	4.574799	11.757743	189.265666	12.098662	NaN	NaN	NaN	6.248148	95.426575	0.453067	0.399774	1.000000	0.634591	1.000000	0.114521	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42	sp|Q86XP3-2|DDX42_HUMAN	DDX42_HUMAN	Isoform 2 of ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42	98.900000	0.002500	90051.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.19632.19632.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19632"	GPIAVIVCPTR	G[+28]PIAVIVC[+57]PTR	D	E	99.200000	54.200000	54.000000	31.000000	Dimethyl (+28), Carbamidomethyl (+57)	1209.690000	2.000000	0.000530	0.440000	207.000000	217.000000	0.510833	1.580267	2.413433	0.827350	1.053400	1.272900	NaN	NaN	NaN	0.641992	2.292678	4.196546	0.962455	1.430375	1.902833	NaN	NaN	NaN	0.802223	1.861527	0.125503	0.144894	0.255722	0.589427	1.000000	0.114408	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1	sp|Q92900|RENT1_HUMAN	RENT1_HUMAN	Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2	98.900000	0.005010	124328.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.25086.25086.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25086"	GPLGETVLECYNCGCR	G[+28]PLGETVLEC[+57]YNC[+57]GC[+57]R	D	N	99.700000	65.000000	46.100000	65.000000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Carbamidomethyl (+57)	1911.830000	2.000000	-0.002500	-1.300000	174.000000	189.000000	NaN	NaN	NaN	0.745200	0.182350	0.242950	NaN	NaN	NaN	NaN	NaN	NaN	0.866890	0.247607	0.363181	NaN	NaN	NaN	0.866890	0.247607	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1	sp|Q92900|RENT1_HUMAN	RENT1_HUMAN	Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2	98.900000	0.005010	124328.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.25085.25085.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25085"	GPLGETVLECYNCGCR	G[+28]PLGETVLEC[+57]YNC[+57]GC[+57]R	D	N	99.700000	79.400000	45.700000	66.300000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1921.830000	2.000000	-0.011000	-5.600000	174.000000	189.000000	NaN	NaN	NaN	0.745200	0.182350	0.242950	NaN	NaN	NaN	NaN	NaN	NaN	0.866890	0.247607	0.363181	NaN	NaN	NaN	0.866890	0.247607	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	LRC47_HUMAN	LRC47_HUMAN	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	100.000000	0.022400	63456.700000	3.000000	4.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis.20605.20605.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20605"	GPSLLVVEQVR	G[+28]PSLLVVEQVR	D	V	99.700000	67.600000	54.100000	45.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1233.730000	2.000000	-0.000670	-0.540000	544.000000	554.000000	1.216567	NaN	NaN	0.865400	0.277750	0.322800	NaN	NaN	NaN	1.528926	NaN	NaN	1.006718	0.377147	0.482547	NaN	NaN	NaN	1.267822	0.377147	0.129302	NaN	0.444236	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	TKT_HUMAN	TKT_HUMAN	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	100.000000	0.037400	67861.400000	4.000000	8.000000	13.000000	Nsco_Tails_biological_replicate1_apoptosis.31197.31197.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31197"	GPSQMALEDLAMFR	G[+28]PSQMALEDLAMFR	D	S	99.600000	59.000000	50.600000	38.800000	Dimethyl (+28), Oxidation (+16), Oxidation (+16), Label:13C(6)15N(4) (+10)	1634.760000	2.000000	-0.005200	-3.200000	425.000000	438.000000	0.591600	0.680700	1.077000	0.817650	0.883450	1.684100	NaN	NaN	NaN	0.743496	0.987571	1.872718	0.951171	1.199606	2.517527	NaN	NaN	NaN	0.847333	1.093589	0.077628	0.061525	0.078465	0.155946	1.000000	0.114013	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	TKT_HUMAN	TKT_HUMAN	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	100.000000	0.037400	67861.400000	4.000000	8.000000	13.000000	Nsco_Tails_biological_replicate1_apoptosis.30696.30696.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30696"	GPSQMALEDLAMFR	G[+28]PSQMALEDLAMFR	D	S	99.700000	64.100000	50.500000	45.400000	Dimethyl (+28), Oxidation (+16), Oxidation (+16)	1624.760000	2.000000	-0.002800	-1.700000	425.000000	438.000000	0.591600	0.680700	1.077000	0.817650	0.883450	1.684100	NaN	NaN	NaN	0.743496	0.987571	1.872718	0.951171	1.199606	2.517527	NaN	NaN	NaN	0.847333	1.093589	0.077628	0.061525	0.078442	0.155832	1.000000	0.113621	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	TKT_HUMAN	TKT_HUMAN	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	100.000000	0.037400	67861.400000	4.000000	8.000000	13.000000	Nsco_Tails_biological_replicate1_apoptosis.37691.37691.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37691"	GPSQMALEDLAMFR	G[+28]PSQMALEDLAMFR	D	S	99.700000	78.000000	52.500000	70.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1602.770000	2.000000	-0.002600	-1.600000	425.000000	438.000000	0.591600	0.680700	1.077000	0.817650	0.883450	1.684100	NaN	NaN	NaN	0.743496	0.987571	1.872718	0.951171	1.199606	2.517527	NaN	NaN	NaN	0.847333	1.093589	0.077628	0.061525	0.078419	0.090385	1.000000	0.113510	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	TKT_HUMAN	TKT_HUMAN	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	100.000000	0.014200	67861.400000	2.000000	5.000000	6.000000	NSco_TAILS_20150124_Protein_complex_100Kda.60817.60817.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=60817"	GPSQMALEDLAMFR	G[+28]PSQMALEDLAMFR	D	S	99.700000	81.600000	51.500000	60.600000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1618.770000	2.000000	-0.005100	-3.100000	425.000000	438.000000	0.591600	0.680700	1.077000	0.817650	0.883450	1.684100	NaN	NaN	NaN	0.743496	0.987571	1.872718	0.951171	1.199606	2.517527	NaN	NaN	NaN	0.847333	1.093589	0.077628	0.061525	1.000000	0.117885	1.000000	0.113454	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	TKT_HUMAN	TKT_HUMAN	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	100.000000	0.014200	67861.400000	2.000000	5.000000	6.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64429.64429.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64429"	GPSQMALEDLAMFR	G[+28]PSQMALEDLAMFR	D	S	99.700000	87.600000	52.100000	80.300000	Dimethyl (+28)	1592.760000	2.000000	-0.004600	-2.900000	425.000000	438.000000	0.591600	0.680700	1.077000	0.817650	0.883450	1.684100	NaN	NaN	NaN	0.743496	0.987571	1.872718	0.951171	1.199606	2.517527	NaN	NaN	NaN	0.847333	1.093589	0.077628	0.061525	1.000000	0.117820	1.000000	0.113288	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	TKT_HUMAN	TKT_HUMAN	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	100.000000	0.011700	67861.400000	1.000000	3.000000	5.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.60396.60396.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=60396"	GPSQMALEDLAMFR	G[+28]PSQMALEDLAMFR	D	S	99.700000	95.200000	51.400000	70.900000	Dimethyl (+28), Oxidation (+16)	1608.760000	2.000000	-0.003100	-1.900000	425.000000	438.000000	0.591600	0.680700	1.077000	0.817650	0.883450	1.684100	NaN	NaN	NaN	0.743496	0.987571	1.872718	0.951171	1.199606	2.517527	NaN	NaN	NaN	0.847333	1.093589	0.077628	0.061525	1.000000	0.181539	1.000000	0.113232	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5	sp|O15511|ARPC5_HUMAN	ARPC5_HUMAN	Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5 PE=1 SV=3	100.000000	0.010000	16302.600000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.12557.12557.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12557"	GQAGPDEGEVDSCLR	G[+28]QAGPDEGEVDSC[+57]LR	D	Q	99.700000	68.100000	45.800000	68.100000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1626.710000	2.000000	-0.013000	-8.100000	33.000000	47.000000	NaN	0.108533	NaN	16.618950	NaN	NaN	NaN	NaN	NaN	NaN	0.157462	NaN	19.332790	NaN	NaN	NaN	NaN	NaN	19.332790	0.157462	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5	sp|O15511|ARPC5_HUMAN	ARPC5_HUMAN	Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5 PE=1 SV=3	100.000000	0.010000	16302.600000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.12545.12545.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12545"	GQAGPDEGEVDSCLR	G[+28]QAGPDEGEVDSC[+57]LR	D	Q	99.700000	90.700000	46.200000	89.100000	Dimethyl (+28), Carbamidomethyl (+57)	1616.710000	2.000000	-0.004900	-3.000000	33.000000	47.000000	NaN	0.108533	NaN	16.618950	NaN	NaN	NaN	NaN	NaN	NaN	0.157462	NaN	19.332790	NaN	NaN	NaN	NaN	NaN	19.332790	0.157462	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5	sp|O15511-2|ARPC5_HUMAN	ARPC5_HUMAN	Isoform 2 of Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5	100.000000	0.010000	16613.000000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.12575.12575.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12575"	GQAGPDEGEVDSCLR	G[+28]QAGPDEGEVDSC[+57]LR	D	H	98.900000	48.700000	48.000000	45.500000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1622.730000	2.000000	-0.005000	-3.100000	33.000000	47.000000	NaN	0.108533	NaN	16.618950	NaN	NaN	NaN	NaN	NaN	NaN	0.157462	NaN	19.332790	NaN	NaN	NaN	NaN	NaN	19.332790	0.157462	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2	PSMD3_HUMAN	PSMD3_HUMAN	26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2	100.000000	0.005010	60961.600000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.42870.42870.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42870"	GQATLLNLLLR	G[+28]QATLLNLLLR	D	N	99.700000	69.100000	52.900000	56.400000	Dimethyl (+28)	1238.770000	2.000000	-0.000028	-0.022000	246.000000	256.000000	0.720700	0.184600	0.256100	0.758800	0.337550	0.443450	NaN	NaN	NaN	0.905743	0.267821	0.445314	0.882710	0.458347	0.662905	NaN	NaN	NaN	0.894227	0.363084	0.008198	0.163350	0.028505	0.340639	1.000000	0.112846	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC	sp|Q00610|CLH1_HUMAN	CLH1_HUMAN	Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5	100.000000	0.011900	191600.900000	7.000000	9.000000	9.000000	Spectrum13317 scans:49084,	GQCDLELINVCNENSLF	G[+28]QC[+57]DLELINVC[+57]NENSLF	R	K	99.700000	72.800000	46.200000	60.600000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57)	2051.930000	2.000000	0.001100	0.540000	924.000000	940.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Sorcin OS=Homo sapiens GN=SRI PE=4 SV=1	SORCN_HUMAN	SORCN_HUMAN	Sorcin OS=Homo sapiens GN=SRI PE=1 SV=1	100.000000	0.005760	21658.700000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.11481.11481.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11481"	GQIDADELQR	G[+28]QIDADELQR	D	C	98.800000	55.200000	51.400000	43.600000	Dimethyl (+28)	1171.590000	2.000000	0.001900	1.600000	47.000000	56.000000	0.545733	0.320733	0.591667	0.222150	2.300050	NaN	NaN	NaN	NaN	0.685853	0.465325	1.028807	0.258427	3.123158	NaN	NaN	NaN	NaN	0.472140	1.794242	0.270598	0.405841	0.507828	0.783242	1.000000	0.112571	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Sorcin OS=Homo sapiens GN=SRI PE=4 SV=1	C9J0K6_HUMAN	C9J0K6_HUMAN	Sorcin OS=Homo sapiens GN=SRI PE=4 SV=1	99.900000	0.002360	17587.300000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.25690.25690.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25690"	GQIDADELQR	G[+28]QIDADELQR	D	C	99.700000	74.500000	51.300000	52.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1181.590000	2.000000	-0.002600	-2.200000	4.000000	13.000000	0.545733	0.320733	0.591667	0.222150	2.300050	NaN	NaN	NaN	NaN	0.685853	0.465325	1.028807	0.258427	3.123158	NaN	NaN	NaN	NaN	0.472140	1.794242	0.270598	0.405841	0.507554	1.000000	1.000000	0.111540	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Surfeit 4 OS=Homo sapiens GN=SURF4 PE=2 SV=1	sp|O15260-2|SURF4_HUMAN	SURF4_HUMAN	Isoform 2 of Surfeit locus protein 4 OS=Homo sapiens GN=SURF4	97.700000	0.002500	17953.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.43463.43463.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43463"	GQNDLMGTAEDFADQFLR	G[+28]QNDLM[+16]GTAEDFADQFLR	M	V	99.100000	61.700000	49.800000	58.800000	Dimethyl (+28), Oxidation (+16)	2070.930000	3.000000	0.001700	0.830000	2.000000	19.000000	NaN	NaN	NaN	0.594150	0.029550	0.051100	NaN	NaN	NaN	NaN	NaN	NaN	0.691173	0.040125	0.076388	NaN	NaN	NaN	0.691173	0.040125	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1	sp|P26599|PTBP1_HUMAN	PTBP1_HUMAN	Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1	100.000000	0.050100	57204.500000	2.000000	8.000000	20.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.14382.14382.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14382"	GQNIYNACCTLR	G[+28]QNIYNAC[+57]C[+57]TLR	D	I	99.500000	59.300000	48.600000	51.200000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1506.690000	2.000000	-0.009300	-6.200000	243.000000	254.000000	0.438767	0.158733	0.282767	0.775550	0.225400	0.295350	NaN	NaN	NaN	0.551422	0.230293	0.491683	0.902196	0.306063	0.441513	NaN	NaN	NaN	0.726809	0.268178	0.150741	0.089343	0.332320	1.000000	1.000000	0.111218	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1	sp|P26599|PTBP1_HUMAN	PTBP1_HUMAN	Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1	100.000000	0.067200	57204.500000	2.000000	6.000000	15.000000	Nsco_Tails_biological_replicate2_apoptosis.13095.13095.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13095"	GQNIYNACCTLR	G[+28]QNIYNAC[+57]C[+57]TLR	D	I	99.700000	58.900000	48.900000	48.200000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57)	1496.680000	2.000000	-0.001500	-1.000000	243.000000	254.000000	0.438767	0.158733	0.282767	0.775550	0.225400	0.295350	NaN	NaN	NaN	0.551422	0.230293	0.491683	0.902196	0.306063	0.441513	NaN	NaN	NaN	0.726809	0.268178	0.150741	0.089343	0.156328	0.105377	1.000000	0.111165	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3	RL5_HUMAN	RL5_HUMAN	60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3	100.000000	0.005010	34345.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.31837.31837.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31837"	GQPGAFTCYLDAGLAR	G[+28]QPGAFTC[+57]YLDAGLAR	D	T	99.700000	99.300000	53.000000	88.500000	Dimethyl (+28), Carbamidomethyl (+57)	1723.830000	2.000000	-0.002600	-1.500000	137.000000	152.000000	0.477133	0.215633	0.446300	0.809300	0.856700	1.059950	NaN	NaN	NaN	0.599640	0.312845	0.776039	0.941457	1.163283	1.584498	NaN	NaN	NaN	0.770548	0.738064	0.138954	0.332749	0.457900	0.402875	1.000000	0.111004	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3	RL5_HUMAN	RL5_HUMAN	60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3	100.000000	0.008960	34345.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.27354.27354.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27354"	GQPGAFTCYLDAGLAR	G[+28]QPGAFTC[+57]YLDAGLAR	D	T	99.200000	54.300000	53.400000	53.700000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1733.840000	2.000000	-0.001200	-0.710000	137.000000	152.000000	0.477133	0.215633	0.446300	0.809300	0.856700	1.059950	NaN	NaN	NaN	0.599640	0.312845	0.776039	0.941457	1.163283	1.584498	NaN	NaN	NaN	0.770548	0.738064	0.138954	0.332749	0.457466	0.350422	1.000000	0.110951	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Double-stranded RNA-specific adenosine deaminase (Fragment) OS=Homo sapiens GN=ADAR PE=4 SV=1	H0YCK3_HUMAN	H0YCK3_HUMAN	Double-stranded RNA-specific adenosine deaminase (Fragment) OS=Homo sapiens GN=ADAR PE=4 SV=1	96.500000	0.004480	132632.900000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.12368.12368.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12368"	GSAFEDGLR	G[+28]SAFEDGLR	D	H	99.100000	50.400000	49.700000	29.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	988.480000	2.000000	-0.001200	-1.200000	1057.000000	1065.000000	1.561433	8.899567	11.374967	1.215750	1.519550	4.324750	6.627571	4.561443	23.532871	1.962339	12.911645	19.779111	1.414279	2.063344	6.464982	4.432713	1.942675	11.277013	2.603111	5.639222	0.107139	0.222001	0.352390	0.233721	0.071694	0.007558	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1	sp|P26599|PTBP1_HUMAN	PTBP1_HUMAN	Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1	100.000000	0.010500	57204.500000	2.000000	3.000000	8.000000	Spectrum13191 scans:48946,	GSDELFSTCVTNGPF	G[+28]SDELFSTC[+57]VTNGPF	R	I	99.700000	72.200000	43.100000	61.900000	Dimethyl (+28), Carbamidomethyl (+57)	1657.730000	2.000000	-0.002000	-1.200000	15.000000	29.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of ATPase inhibitor, mitochondrial OS=Homo sapiens GN=ATPIF1	sp|Q9UII2|ATIF1_HUMAN	ATIF1_HUMAN	ATPase inhibitor, mitochondrial OS=Homo sapiens GN=ATPIF1 PE=1 SV=1	100.000000	0.005760	12230.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.2459.2459.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2459"	GSDQSENVDR	G[+28]SDQSENVDR	F	G	99.700000	75.700000	45.100000	53.000000	Dimethyl (+28)	1133.490000	2.000000	-0.000420	-0.370000	26.000000	35.000000	NaN	NaN	0.780667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.357445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of ATPase inhibitor, mitochondrial OS=Homo sapiens GN=ATPIF1	sp|Q9UII2-2|ATIF1_HUMAN	ATIF1_HUMAN	Isoform 2 of ATPase inhibitor, mitochondrial OS=Homo sapiens GN=ATPIF1	100.000000	0.005760	7893.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.2474.2474.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2474"	GSDQSENVDR	G[+28]SDQSENVDR	F	G	98.800000	48.900000	45.700000	26.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1143.510000	2.000000	0.002200	1.900000	26.000000	35.000000	NaN	NaN	0.780667	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.357445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4	DNJB1_HUMAN	DNJB1_HUMAN	DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4	100.000000	0.004480	38027.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.9379.9379.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9379"	GSDVIYPAR	G[+28]SDVIYPAR	D	I	99.700000	62.700000	51.900000	35.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1014.540000	2.000000	0.000530	0.520000	251.000000	259.000000	6.291800	1.159167	0.183933	3.451350	2.501500	0.473550	NaN	2.651829	0.968214	7.907251	1.681739	0.319828	4.014948	3.396700	0.707900	NaN	1.129389	0.463971	5.961100	2.069276	0.200895	0.093762	0.290219	0.166593	1.000000	0.007529	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 OS=Homo sapiens GN=HDDC3 PE=4 SV=1	sp|Q8N4P3|MESH1_HUMAN	MESH1_HUMAN	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 OS=Homo sapiens GN=HDDC3 PE=1 SV=3	97.400000	0.002880	20311.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.43175.43175.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43175"	GSEAAQLLEAADFAAR	G[+42]SEAAQLLEAADFAAR	M	K	99.700000	94.600000	52.600000	73.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1670.810000	2.000000	-0.008600	-5.100000	2.000000	17.000000	0.566600	0.329200	0.573000	NaN	30.838300	0.459900	NaN	NaN	NaN	0.712077	0.477609	0.996348	NaN	41.874262	0.687495	NaN	NaN	NaN	0.712077	21.175935	NaN	0.469618	NaN	0.833968	1.000000	0.110369	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 OS=Homo sapiens GN=HDDC3 PE=4 SV=1	H0YNP9_HUMAN	H0YNP9_HUMAN	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 OS=Homo sapiens GN=HDDC3 PE=4 SV=1	100.000000	0.005270	15938.300000	1.000000	4.000000	4.000000	Spectrum71153 scans:46642,	GSEAAQLLEAADFAAR	G[+42]SEAAQLLEAADFAAR	M	K	99.700000	87.800000	50.000000	73.700000	Acetyl (+42), Label:13C(6) (+6)	1666.820000	2.000000	-0.001200	-0.710000	2.000000	17.000000	0.566600	0.329200	0.573000	NaN	30.838300	0.459900	NaN	NaN	NaN	0.712077	0.477609	0.996348	NaN	41.874262	0.687495	NaN	NaN	NaN	0.712077	21.175935	NaN	0.469618	NaN	1.000000	1.000000	0.110316	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 OS=Homo sapiens GN=HDDC3 PE=4 SV=1	H0YNP9_HUMAN	H0YNP9_HUMAN	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 OS=Homo sapiens GN=HDDC3 PE=4 SV=1	100.000000	0.005270	15938.300000	1.000000	4.000000	4.000000	Spectrum71159 scans:46649,	GSEAAQLLEAADFAAR	G[+42]SEAAQLLEAADFAAR	M	K	99.700000	108.000000	49.100000	84.200000	Acetyl (+42)	1660.810000	2.000000	-0.000230	-0.140000	2.000000	17.000000	0.566600	0.329200	0.573000	NaN	30.838300	0.459900	NaN	NaN	NaN	0.712077	0.477609	0.996348	NaN	41.874262	0.687495	NaN	NaN	NaN	0.712077	21.175935	NaN	0.469618	NaN	1.000000	1.000000	0.110211	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of RRP12-like protein OS=Homo sapiens GN=RRP12	sp|Q5JTH9-3|RRP12_HUMAN	RRP12_HUMAN	Isoform 3 of RRP12-like protein OS=Homo sapiens GN=RRP12	98.900000	0.002500	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.18201.18201.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18201"	GSEETLDFPR	G[+28]SEETLDFPR	D	S	99.700000	56.800000	49.600000	42.600000	Dimethyl (+28)	1177.560000	2.000000	-0.000076	-0.064000	0.000000	0.000000	3.740067	9.697400	1.528867	0.712250	0.329550	0.466800	NaN	NaN	NaN	4.700348	14.069156	2.658436	0.828559	0.447485	0.697810	NaN	NaN	NaN	2.764453	7.258320	0.388920	0.471531	0.865098	0.635917	0.967922	0.109585	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.028800	52861.700000	3.000000	5.000000	10.000000	Nsco_Tails_biological_replicate1_apoptosis.38879.38879.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38879"	GSEIPLPPILLGR	G[+28]SEIPLPPILLGR	D	L	99.700000	66.300000	54.500000	47.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1398.850000	2.000000	-0.000069	-0.049000	72.000000	84.000000	0.509433	0.280100	0.543133	0.743100	0.474750	0.638250	NaN	NaN	NaN	0.640233	0.406374	0.944415	0.864447	0.644647	0.954107	NaN	NaN	NaN	0.752340	0.525510	0.094170	0.141927	0.616550	0.191331	0.963889	0.109533	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.042100	52861.700000	8.000000	16.000000	32.000000	Spectrum67418 scans:41916,	GSEIPLPPILLGR	G[+28]SEIPLPPILLGR	D	L	99.600000	61.700000	49.100000	34.900000	Dimethyl (+28), Label:13C(6) (+6)	1394.860000	2.000000	-0.001500	-1.100000	72.000000	84.000000	0.509433	0.280100	0.543133	0.743100	0.474750	0.638250	NaN	NaN	NaN	0.640233	0.406374	0.944415	0.864447	0.644647	0.954107	NaN	NaN	NaN	0.752340	0.525510	0.094170	0.141927	0.615389	0.403346	0.955923	0.109377	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.042100	52861.700000	8.000000	16.000000	32.000000	Spectrum67402 scans:41896,	GSEIPLPPILLGR	G[+28]SEIPLPPILLGR	D	L	99.700000	65.400000	49.800000	51.800000	Dimethyl (+28)	1388.840000	2.000000	-0.001100	-0.810000	72.000000	84.000000	0.509433	0.280100	0.543133	0.743100	0.474750	0.638250	NaN	NaN	NaN	0.640233	0.406374	0.944415	0.864447	0.644647	0.954107	NaN	NaN	NaN	0.752340	0.525510	0.094170	0.141927	1.000000	0.403016	0.944218	0.108404	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3	ERF1_HUMAN	ERF1_HUMAN	Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3	100.000000	0.017900	49014.600000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.18711.18711.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18711"	GSGALFGTLQGNTR	G[+28]SGALFGTLQGNTR	D	E	99.200000	56.700000	54.000000	43.300000	Dimethyl (+28)	1405.730000	2.000000	-0.003200	-2.300000	153.000000	166.000000	2.283067	0.399200	0.458100	2.167750	4.817500	2.221000	NaN	NaN	NaN	2.869256	0.579166	0.796557	2.521739	6.541517	3.320129	NaN	NaN	NaN	2.695497	3.560341	0.040981	0.443782	1.000000	1.000000	0.940379	0.108353	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.035600	26545.800000	9.000000	20.000000	27.000000	Spectrum34713 scans:3940,	GSGGFGSTGKN	G[+28]SGGFGSTGKN	R	-	99.600000	63.100000	47.300000	55.400000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1027.520000	2.000000	-0.001500	-1.400000	242.000000	252.000000	15.582233	40.059367	6.290267	3.031550	1.079300	0.633350	NaN	NaN	NaN	19.583051	58.118822	10.937692	3.526596	1.465544	0.946782	NaN	NaN	NaN	11.554823	29.792183	0.284159	0.407360	0.318486	1.000000	0.936572	0.108251	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.023100	26545.800000	3.000000	7.000000	10.000000	Nsco_Tails_biological_replicate_3_fraction6A.3984.3984.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3984"	GSGGFGSTGKN	G[+28]SGGFGSTGKN	R	-	99.700000	75.600000	49.200000	35.400000	Dimethyl (+28), Dimethyl (+28)	1023.500000	2.000000	-0.000200	-0.200000	242.000000	252.000000	15.582233	40.059367	6.290267	3.031550	1.079300	0.633350	NaN	NaN	NaN	19.583051	58.118822	10.937692	3.526596	1.465544	0.946782	NaN	NaN	NaN	11.554823	29.792183	0.284159	0.407360	1.000000	0.422456	0.932796	0.107647	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Regulation of nuclear pre-mRNA domain-containing protein 2 OS=Homo sapiens GN=RPRD2	sp|Q5VT52-2|RPRD2_HUMAN	RPRD2_HUMAN	Isoform 2 of Regulation of nuclear pre-mRNA domain-containing protein 2 OS=Homo sapiens GN=RPRD2	98.800000	0.001320	152573.300000	1.000000	1.000000	1.000000	Spectrum25602 scans:5154,	GSKIIVEDR	NaN	D	K	99.700000	42.700000	47.600000	0.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1081.670000	3.000000	0.000075	0.070000	343.000000	351.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.092200	90567.200000	4.000000	7.000000	7.000000	Nsco_Tails_biological_replicate_3_fraction2A.9515.9515.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9515"	GSLDLGGDSAGR	G[+28]SLDLGGDSAGR	N	S	99.300000	71.900000	50.800000	46.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1141.570000	2.000000	0.004900	4.300000	58.000000	69.000000	1.631333	1.022933	0.885967	0.771950	0.231900	0.297350	NaN	NaN	1.789443	2.050186	1.484089	1.540544	0.898008	0.314889	0.444503	NaN	NaN	0.857506	1.474097	0.899489	0.237177	0.366898	1.000000	1.000000	0.914361	0.107347	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.025000	90567.200000	8.000000	16.000000	19.000000	Spectrum18007 scans:9514,	GSLDLGGDSAGR	G[+28]SLDLGGDSAGR	N	S	99.400000	57.100000	46.900000	31.500000	Dimethyl (+28)	1131.550000	2.000000	0.000078	0.069000	58.000000	69.000000	1.631333	1.022933	0.885967	0.771950	0.231900	0.297350	NaN	NaN	1.789443	2.050186	1.484089	1.540544	0.898008	0.314889	0.444503	NaN	NaN	0.857506	1.474097	0.899489	0.237177	0.366898	1.000000	1.000000	0.910761	0.107248	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4	TCPD_HUMAN	TCPD_HUMAN	T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4	100.000000	0.004670	57907.900000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.22947.22947.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22947"	GSNKLVIEEAER	G[+28]SNKLVIEEAER	R	S	99.400000	64.200000	55.400000	47.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1417.790000	3.000000	-0.000650	-0.460000	392.000000	403.000000	19.426033	7.648433	0.406333	1.204550	31.794500	23.109400	10.023557	NaN	1.834400	24.413766	11.096479	0.706544	1.401251	43.172653	34.545781	6.704048	NaN	0.879049	10.839688	27.134566	0.137572	0.000000	0.349726	0.000000	0.060664	0.107099	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Neurolysin, mitochondrial OS=Homo sapiens GN=NLN PE=1 SV=1	NEUL_HUMAN	NEUL_HUMAN	Neurolysin, mitochondrial OS=Homo sapiens GN=NLN PE=1 SV=1	100.000000	0.002630	80636.300000	2.000000	2.000000	2.000000	Spectrum67554 scans:42081,	GSPIADDLLEKLVASR	G[+28]SPIADDLLEKLVASR	D	L	99.700000	58.700000	51.800000	49.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1749.030000	3.000000	-0.001300	-0.760000	552.000000	567.000000	104.045300	52.012100	0.573800	1.168900	NaN	5.295500	NaN	NaN	NaN	130.759457	75.460054	0.997740	1.359779	NaN	7.916137	NaN	NaN	NaN	66.059618	75.460054	0.413961	NaN	1.000000	NaN	0.886335	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	TCPQ_HUMAN	TCPQ_HUMAN	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	100.000000	0.017300	59603.000000	3.000000	5.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.13418.13418.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13418"	GSTDNLMDDIER	G[+28]STDNLMDDIER	R	A	99.700000	72.700000	45.200000	68.100000	Dimethyl (+28), Oxidation (+16)	1408.610000	2.000000	-0.003700	-2.600000	379.000000	390.000000	0.695500	0.235300	0.352533	0.339200	3.105300	9.793300	NaN	NaN	NaN	0.874073	0.341377	0.612995	0.394591	4.216580	14.639809	NaN	NaN	NaN	0.634332	2.278978	0.230041	0.448571	0.256670	1.000000	0.882952	0.106068	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	TCPQ_HUMAN	TCPQ_HUMAN	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	100.000000	0.017300	59603.000000	3.000000	5.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.13421.13421.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13421"	GSTDNLMDDIER	G[+28]STDNLMDDIER	R	A	99.700000	77.400000	45.600000	71.100000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1418.620000	2.000000	-0.004900	-3.500000	379.000000	390.000000	0.695500	0.235300	0.352533	0.339200	3.105300	9.793300	NaN	NaN	NaN	0.874073	0.341377	0.612995	0.394591	4.216580	14.639809	NaN	NaN	NaN	0.634332	2.278978	0.230041	0.448571	0.256588	1.000000	0.879594	0.106019	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	TCPQ_HUMAN	TCPQ_HUMAN	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	100.000000	0.017300	59603.000000	3.000000	5.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.22654.22654.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22654"	GSTDNLMDDIER	G[+28]STDNLMDDIER	R	A	99.700000	114.000000	46.900000	101.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1402.620000	2.000000	-0.003600	-2.500000	379.000000	390.000000	0.695500	0.235300	0.352533	0.339200	3.105300	9.793300	NaN	NaN	NaN	0.874073	0.341377	0.612995	0.394591	4.216580	14.639809	NaN	NaN	NaN	0.634332	2.278978	0.230041	0.448571	0.280184	0.488097	0.859975	0.105970	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	TCPQ_HUMAN	TCPQ_HUMAN	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	100.000000	0.014500	59603.000000	5.000000	8.000000	11.000000	Spectrum6476 scans:26181,	GSTDNLMDDIER	G[+28]STDNLMDDIER	R	A	99.700000	67.900000	43.800000	62.700000	Dimethyl (+28), Oxidation (+16), Label:13C(6) (+6)	1414.630000	2.000000	-0.003200	-2.300000	379.000000	390.000000	0.695500	0.235300	0.352533	0.339200	3.105300	9.793300	NaN	NaN	NaN	0.874073	0.341377	0.612995	0.394591	4.216580	14.639809	NaN	NaN	NaN	0.634332	2.278978	0.230041	0.448571	0.549376	0.487944	0.856790	0.105825	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	TCPQ_HUMAN	TCPQ_HUMAN	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	100.000000	0.011700	59603.000000	3.000000	5.000000	5.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.42634.42634.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42634"	GSTDNLMDDIER	G[+28]STDNLMDDIER	R	A	99.500000	52.200000	46.700000	52.200000	Dimethyl (+28)	1392.620000	2.000000	-0.002500	-1.800000	379.000000	390.000000	0.695500	0.235300	0.352533	0.339200	3.105300	9.793300	NaN	NaN	NaN	0.874073	0.341377	0.612995	0.394591	4.216580	14.639809	NaN	NaN	NaN	0.634332	2.278978	0.230041	0.448571	0.548998	1.000000	0.850490	0.105632	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Homo sapiens GN=OXCT1 PE=1 SV=1	SCOT1_HUMAN	SCOT1_HUMAN	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Homo sapiens GN=OXCT1 PE=1 SV=1	100.000000	0.005270	56140.800000	3.000000	4.000000	4.000000	Spectrum35057 scans:4330,	GSVAIASKPR	G[+28]SVAIASKPR	D	E	99.700000	62.600000	46.200000	47.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1050.680000	2.000000	-0.001100	-1.000000	178.000000	187.000000	0.282200	NaN	NaN	14.786600	NaN	6.626900	NaN	NaN	NaN	0.354656	NaN	NaN	17.201221	NaN	9.906421	NaN	NaN	NaN	8.777939	NaN	0.477431	NaN	0.495717	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Annexin A2 OS=Homo sapiens GN=ANXA2 PE=1 SV=2	sp|P07355|ANXA2_HUMAN	ANXA2_HUMAN	Annexin A2 OS=Homo sapiens GN=ANXA2 PE=1 SV=2	100.000000	0.008640	38588.100000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.26802.26802.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26802"	GSVIDYELIDQDAR	G[+28]SVIDYELIDQDAR	D	D	99.700000	69.700000	53.500000	61.900000	Dimethyl (+28)	1620.800000	2.000000	-0.001600	-1.000000	183.000000	196.000000	0.922900	0.304167	0.389733	0.859800	1.118500	1.219100	NaN	NaN	NaN	1.159859	0.441290	0.677679	1.000204	1.518772	1.822408	NaN	NaN	NaN	1.080031	0.980031	0.046969	0.319982	0.088722	1.000000	0.841212	0.105391	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Annexin A2 OS=Homo sapiens GN=ANXA2 PE=1 SV=2	sp|P07355|ANXA2_HUMAN	ANXA2_HUMAN	Annexin A2 OS=Homo sapiens GN=ANXA2 PE=1 SV=2	99.900000	0.002330	38588.100000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.49480.49480.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=49480"	GSVIDYELIDQDAR	G[+28]SVIDYELIDQDAR	D	D	99.700000	91.600000	53.400000	78.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1630.800000	2.000000	-0.006400	-3.900000	183.000000	196.000000	0.922900	0.304167	0.389733	0.859800	1.118500	1.219100	NaN	NaN	NaN	1.159859	0.441290	0.677679	1.000204	1.518772	1.822408	NaN	NaN	NaN	1.080031	0.980031	0.046969	0.319982	0.359783	0.391792	0.838164	0.105343	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2	sp|O75376|NCOR1_HUMAN	NCOR1_HUMAN	Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2	99.400000	0.010800	270190.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.2233.2233.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2233"	GTAEETEER	G[+28]TAEETEER	D	E	99.700000	66.500000	47.500000	43.500000	Dimethyl (+28), Label:13C(6) (+6)	1054.490000	2.000000	-0.000180	-0.170000	556.000000	564.000000	NaN	1.998033	NaN	0.473600	NaN	NaN	NaN	NaN	NaN	NaN	2.898781	NaN	0.550938	NaN	NaN	NaN	NaN	NaN	0.550938	2.898781	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	XRCC5_HUMAN	XRCC5_HUMAN	X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3	100.000000	0.026900	82689.100000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.15965.15965.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15965"	GTDNPLSGGDQYQNITVHR	G[+28]TDNPLSGGDQYQNITVHR	D	H	99.700000	96.300000	53.700000	81.400000	Dimethyl (+28)	2099.000000	3.000000	-0.005300	-2.500000	63.000000	81.000000	0.637567	0.457500	0.703533	0.661800	0.706100	1.069350	NaN	NaN	NaN	0.801265	0.663749	1.223323	0.769871	0.958789	1.598550	NaN	NaN	NaN	0.785568	0.811269	0.012719	0.114511	0.097002	0.118014	0.832134	0.105104	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	RuvB-like 1 OS=Homo sapiens GN=RUVBL1 PE=1 SV=1	sp|Q9Y265|RUVB1_HUMAN	RUVB1_HUMAN	RuvB-like 1 OS=Homo sapiens GN=RUVBL1 PE=1 SV=1	99.900000	0.001320	50211.400000	1.000000	1.000000	1.000000	Spectrum15741 scans:5134,	GTEDITSPH	G[+28]TEDITSPH	R	G	99.400000	57.800000	43.900000	47.900000	Dimethyl (+28)	983.460000	2.000000	0.000600	0.610000	340.000000	348.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.132000	31307.200000	4.000000	10.000000	10.000000	Nsco_Tails_biological_replicate_3_fraction2A.10777.10777.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10777"	GTGIVSAPVPK	G[+28]TGIVSAPVPK	R	K	99.700000	72.300000	52.600000	59.200000	Dimethyl (+28), Dimethyl (+28)	1080.650000	2.000000	-0.000120	-0.110000	201.000000	211.000000	9.387633	22.622233	0.839867	11.843350	7.138600	101.208750	NaN	NaN	NaN	11.797956	32.820727	1.460384	13.777345	9.693258	151.294940	NaN	NaN	NaN	12.787650	21.256993	0.000000	0.009915	0.000000	0.012106	0.826190	0.104866	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.029000	31307.200000	7.000000	15.000000	22.000000	Spectrum18562 scans:10734,	GTGIVSAPVPK	G[+28]TGIVSAPVPK	R	K	99.200000	54.000000	48.100000	41.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1088.670000	2.000000	-0.000600	-0.550000	201.000000	211.000000	9.387633	22.622233	0.839867	11.843350	7.138600	101.208750	NaN	NaN	NaN	11.797956	32.820727	1.460384	13.777345	9.693258	151.294940	NaN	NaN	NaN	12.787650	21.256993	0.000000	0.009915	0.000000	0.019329	0.823250	0.104581	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.029000	31307.200000	7.000000	15.000000	22.000000	Spectrum5549 scans:23916,	GTGIVSAPVPK	G[+28]TGIVSAPVPK	R	K	99.700000	47.700000	47.400000	32.800000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1084.680000	3.000000	0.001400	1.300000	201.000000	211.000000	9.387633	22.622233	0.839867	11.843350	7.138600	101.208750	NaN	NaN	NaN	11.797956	32.820727	1.460384	13.777345	9.693258	151.294940	NaN	NaN	NaN	12.787650	21.256993	0.000000	0.009915	0.000000	0.010382	0.811696	0.104487	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	sp|Q07955-3|SRSF1_HUMAN	SRSF1_HUMAN	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	100.000000	0.010000	22442.200000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.17219.17219.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17219"	GTGVVEFVR	G[+28]TGVVEFVR	D	K	99.700000	56.900000	52.600000	35.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1000.560000	2.000000	0.000180	0.180000	156.000000	164.000000	0.326033	0.223233	0.896200	0.822650	0.389300	0.473700	16.770700	8.770629	1.204000	0.409744	0.323871	1.558338	0.956987	0.528617	0.708125	11.216734	3.735327	0.576960	4.194488	1.529272	0.347269	0.300454	0.851606	0.630717	0.055149	0.007118	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	sp|Q07955-3|SRSF1_HUMAN	SRSF1_HUMAN	Isoform ASF-3 of Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1	100.000000	0.010000	22442.200000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.17362.17362.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17362"	GTGVVEFVR	G[+28]TGVVEFVR	D	K	99.700000	59.200000	52.100000	35.900000	Dimethyl (+28)	990.550000	2.000000	0.000088	0.089000	156.000000	164.000000	0.326033	0.223233	0.896200	0.822650	0.389300	0.473700	16.770700	8.770629	1.204000	0.409744	0.323871	1.558338	0.956987	0.528617	0.708125	11.216734	3.735327	0.576960	4.194488	1.529272	0.347269	0.300454	1.000000	0.630336	0.054957	0.007095	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	ANX11_HUMAN	ANX11_HUMAN	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	100.000000	0.004720	54373.700000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.48171.48171.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=48171"	GTITDAPGFDPLR	G[+28]TITDAPGFDPLR	R	D	99.700000	71.900000	53.400000	63.200000	Dimethyl (+28)	1386.710000	2.000000	-0.009200	-6.600000	192.000000	204.000000	1.834233	2.034800	1.855100	4.329300	4.803550	1.086400	NaN	NaN	NaN	2.305182	2.952123	3.225700	5.036266	6.522575	1.624038	NaN	NaN	NaN	3.670724	4.737349	0.226729	0.229427	1.000000	1.000000	0.800461	0.104017	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	ANX11_HUMAN	ANX11_HUMAN	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	100.000000	0.006590	54373.700000	3.000000	5.000000	5.000000	Spectrum55169 scans:27438,	GTITDAPGFDPLR	G[+28]TITDAPGFDPLR	R	D	99.700000	85.700000	50.000000	67.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1396.720000	2.000000	-0.001100	-0.750000	192.000000	204.000000	1.834233	2.034800	1.855100	4.329300	4.803550	1.086400	NaN	NaN	NaN	2.305182	2.952123	3.225700	5.036266	6.522575	1.624038	NaN	NaN	NaN	3.670724	4.737349	0.226729	0.229427	0.278693	1.000000	0.797701	0.103923	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	FKBP4_HUMAN	FKBP4_HUMAN	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	100.000000	0.015800	51787.900000	5.000000	9.000000	12.000000	Spectrum22808 scans:5848,	GTKFDSSLDR	G[+28]TKFDSSLDR	D	K	99.700000	47.400000	49.900000	28.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1190.650000	3.000000	-0.000035	-0.029000	64.000000	73.000000	18.465300	8.796400	0.489933	78.661750	52.747400	0.671400	NaN	21.364814	1.687186	23.206359	12.761969	0.851910	91.507052	71.623871	1.003662	NaN	9.099071	0.808504	57.356706	31.161637	0.000000	0.000957	0.000000	0.000961	0.794960	0.007070	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Angio-associated migratory cell protein OS=Homo sapiens GN=AAMP PE=1 SV=2	C9JEH3_HUMAN	C9JEH3_HUMAN	Angio-associated migratory cell protein OS=Homo sapiens GN=AAMP PE=4 SV=1	98.900000	0.005010	46802.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38537.38537.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38537"	GTLAIYDLATQTLR	G[+28]TLAIYDLATQTLR	D	H	99.700000	90.100000	56.400000	60.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1572.890000	2.000000	0.010000	6.400000	340.000000	353.000000	0.532900	0.185100	0.347300	0.848950	0.325050	0.383200	NaN	NaN	NaN	0.669725	0.268546	0.603895	0.987582	0.441374	0.572838	NaN	NaN	NaN	0.828653	0.354960	0.120633	0.152026	0.127738	0.178763	0.792237	0.103644	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Angio-associated migratory cell protein OS=Homo sapiens GN=AAMP PE=1 SV=2	C9JEH3_HUMAN	C9JEH3_HUMAN	Angio-associated migratory cell protein OS=Homo sapiens GN=AAMP PE=4 SV=1	98.900000	0.008960	46802.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.32768.32768.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32768"	GTLAIYDLATQTLR	G[+28]TLAIYDLATQTLR	D	H	99.700000	89.900000	56.200000	58.100000	Dimethyl (+28)	1562.870000	2.000000	0.000640	0.410000	340.000000	353.000000	0.532900	0.185100	0.347300	0.848950	0.325050	0.383200	NaN	NaN	NaN	0.669725	0.268546	0.603895	0.987582	0.441374	0.572838	NaN	NaN	NaN	0.828653	0.354960	0.120633	0.152026	1.000000	0.178702	0.781532	0.103598	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2	sp|P43034|LIS1_HUMAN	LIS1_HUMAN	Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2	100.000000	0.005010	46619.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.10875.10875.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10875"	GTLIASCSNDQTVR	G[+28]TLIASC[+57]SNDQTVR	D	V	99.500000	55.700000	53.000000	48.700000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1558.770000	2.000000	0.000440	0.280000	246.000000	259.000000	0.574300	1.820933	3.325333	0.821100	0.422000	0.514650	NaN	NaN	NaN	0.721754	2.641842	5.782183	0.955184	0.573019	0.769340	NaN	NaN	NaN	0.838469	1.607430	0.088052	0.364023	1.000000	0.427754	0.778900	0.103505	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2	sp|P43034|LIS1_HUMAN	LIS1_HUMAN	Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2	100.000000	0.005010	46619.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.10897.10897.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10897"	GTLIASCSNDQTVR	G[+28]TLIASC[+57]SNDQTVR	D	V	99.700000	78.300000	52.600000	61.400000	Dimethyl (+28), Carbamidomethyl (+57)	1548.750000	2.000000	-0.001800	-1.200000	246.000000	259.000000	0.574300	1.820933	3.325333	0.821100	0.422000	0.514650	NaN	NaN	NaN	0.721754	2.641842	5.782183	0.955184	0.573019	0.769340	NaN	NaN	NaN	0.838469	1.607430	0.088052	0.364023	0.092058	0.427609	0.776286	0.103366	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=4 SV=1	E9PEB5_HUMAN	E9PEB5_HUMAN	Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=4 SV=1	100.000000	0.006590	68886.100000	4.000000	5.000000	5.000000	Spectrum39884 scans:9915,	GTPQQIDYAR	G[+28]TPQQIDYAR	R	Q	98.600000	59.000000	47.900000	46.600000	Dimethyl (+28)	1175.590000	2.000000	-0.003100	-2.700000	431.000000	440.000000	NaN	NaN	1.481067	3.654650	19.876550	3.242000	2.976814	1.130843	1.891971	NaN	NaN	2.575320	4.251447	26.989680	4.846401	1.990980	0.481615	0.906638	3.121214	13.735648	0.221178	0.469363	0.396429	1.000000	0.773690	0.103228	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	HTSF1_HUMAN	HTSF1_HUMAN	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	100.000000	0.030100	85836.600000	4.000000	8.000000	12.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.7738.7738.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7738"	GTTDYQVEETSR	G[+28]TTDYQVEETSR	D	E	99.700000	79.500000	48.200000	71.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1422.650000	2.000000	-0.004900	-3.400000	349.000000	360.000000	0.705967	0.232267	0.330600	0.712500	0.375800	0.526200	NaN	NaN	NaN	0.887227	0.336976	0.574857	0.828850	0.510286	0.786606	NaN	NaN	NaN	0.858038	0.423631	0.021648	0.128450	0.089855	0.768485	0.771111	0.103182	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	HTSF1_HUMAN	HTSF1_HUMAN	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	100.000000	0.030100	85836.600000	4.000000	8.000000	12.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.7735.7735.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7735"	GTTDYQVEETSR	G[+28]TTDYQVEETSR	D	E	99.700000	82.800000	47.900000	76.300000	Dimethyl (+28)	1412.640000	2.000000	-0.003300	-2.300000	349.000000	360.000000	0.705967	0.232267	0.330600	0.712500	0.375800	0.526200	NaN	NaN	NaN	0.887227	0.336976	0.574857	0.828850	0.510286	0.786606	NaN	NaN	NaN	0.858038	0.423631	0.021648	0.128450	0.044032	0.228810	0.768549	0.103136	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4	sp|O95243|MBD4_HUMAN	MBD4_HUMAN	Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1 SV=1	96.700000	0.001320	66034.600000	1.000000	1.000000	1.000000	Spectrum11667 scans:41802,	GTTGLESLSLGDR	G[+42]TTGLESLSLGDR	M	G	99.100000	52.600000	48.300000	41.700000	Acetyl (+42)	1346.670000	2.000000	-0.001100	-0.790000	2.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.123000	57471.900000	10.000000	25.000000	49.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40451.40451.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40451"	GTTSVTVLAAELLR	G[+28]TTSVTVLAAELLR	D	E	99.700000	77.600000	55.600000	62.100000	Dimethyl (+28)	1457.840000	2.000000	-0.000760	-0.520000	98.000000	111.000000	2.127000	0.555533	0.291867	0.824700	0.435050	0.529250	NaN	NaN	NaN	2.673118	0.805977	0.507506	0.959372	0.590739	0.791165	NaN	NaN	NaN	1.816245	0.698358	0.280635	0.097339	0.477823	0.208756	0.741453	0.102952	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.123000	57471.900000	10.000000	25.000000	49.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40452.40452.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40452"	GTTSVTVLAAELLR	G[+28]TTSVTVLAAELLR	D	E	99.700000	82.100000	55.600000	59.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1467.850000	2.000000	-0.000160	-0.110000	98.000000	111.000000	2.127000	0.555533	0.291867	0.824700	0.435050	0.529250	NaN	NaN	NaN	2.673118	0.805977	0.507506	0.959372	0.590739	0.791165	NaN	NaN	NaN	1.816245	0.698358	0.280635	0.097339	0.477588	0.208627	0.739084	0.102769	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.021100	92453.700000	5.000000	9.000000	16.000000	Spectrum21750 scans:5663,	GTVEEDLGKSR	G[+28]TVEEDLGKSR	D	E	99.700000	40.100000	50.200000	26.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1255.700000	3.000000	0.000670	0.530000	29.000000	39.000000	6.309467	3.740800	0.557767	22.498750	18.525950	0.839750	3.845900	7.569986	470.438614	7.929454	5.427217	0.969860	26.172750	25.155747	1.255326	2.572250	3.223985	225.435410	12.224818	11.268983	0.090812	0.089423	0.306534	0.191541	0.049756	0.007004	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.040300	92453.700000	3.000000	7.000000	9.000000	Nsco_Tails_biological_replicate2_apoptosis.7528.7528.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7528"	GTVEEDLGKSR	G[+28]TVEEDLGKSR	D	E	99.700000	67.200000	53.300000	53.400000	Dimethyl (+28), Dimethyl (+28)	1245.660000	2.000000	-0.001300	-1.000000	29.000000	39.000000	6.309467	3.740800	0.557767	22.498750	18.525950	0.839750	3.845900	7.569986	470.438614	7.929454	5.427217	0.969860	26.172750	25.155747	1.255326	2.572250	3.223985	225.435410	12.224818	11.268983	0.090812	0.089423	0.172856	0.191423	0.049600	0.006998	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.040300	92453.700000	3.000000	7.000000	9.000000	Nsco_Tails_biological_replicate2_apoptosis.7519.7519.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7519"	GTVEEDLGKSR	G[+28]TVEEDLGKSR	D	E	99.700000	73.500000	53.900000	49.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1263.680000	2.000000	-0.000390	-0.310000	29.000000	39.000000	6.309467	3.740800	0.557767	22.498750	18.525950	0.839750	3.845900	7.569986	470.438614	7.929454	5.427217	0.969860	26.172750	25.155747	1.255326	2.572250	3.223985	225.435410	12.224818	11.268983	0.090812	0.089423	0.172761	0.157591	0.049290	0.006991	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Annexin A5 OS=Homo sapiens GN=ANXA5 PE=1 SV=2	ANXA5_HUMAN	ANXA5_HUMAN	Annexin A5 OS=Homo sapiens GN=ANXA5 PE=1 SV=2	99.800000	0.002630	35920.600000	1.000000	2.000000	2.000000	Spectrum54137 scans:26253,	GTVTDFPGFDER	G[+28]TVTDFPGFDER	R	A	99.400000	60.700000	46.900000	51.400000	Dimethyl (+28), Label:13C(6) (+6)	1373.650000	2.000000	-0.002900	-2.100000	7.000000	18.000000	0.936233	0.379700	0.401467	15.644400	1.371850	0.270950	NaN	NaN	NaN	1.176616	0.550875	0.698081	18.199098	1.862788	0.405038	NaN	NaN	NaN	9.687857	1.206832	0.425437	0.316952	0.856303	0.339242	0.720665	0.102496	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Annexin A5 OS=Homo sapiens GN=ANXA5 PE=1 SV=2	ANXA5_HUMAN	ANXA5_HUMAN	Annexin A5 OS=Homo sapiens GN=ANXA5 PE=1 SV=2	99.800000	0.002630	35920.600000	1.000000	2.000000	2.000000	Spectrum54146 scans:26263,	GTVTDFPGFDER	G[+28]TVTDFPGFDER	R	A	99.700000	78.800000	45.600000	69.000000	Dimethyl (+28)	1367.630000	2.000000	-0.001100	-0.800000	7.000000	18.000000	0.936233	0.379700	0.401467	15.644400	1.371850	0.270950	NaN	NaN	NaN	1.176616	0.550875	0.698081	18.199098	1.862788	0.405038	NaN	NaN	NaN	9.687857	1.206832	0.425437	0.316952	0.855807	0.339137	0.718427	0.102269	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Annexin A5 OS=Homo sapiens GN=ANXA5 PE=1 SV=2	ANXA5_HUMAN	ANXA5_HUMAN	Annexin A5 OS=Homo sapiens GN=ANXA5 PE=1 SV=2	100.000000	0.007000	35920.600000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.45562.45562.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=45562"	GTVTDFPGFDER	G[+28]TVTDFPGFDER	R	A	99.600000	56.000000	49.400000	43.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1377.640000	2.000000	-0.003100	-2.300000	7.000000	18.000000	0.936233	0.379700	0.401467	15.644400	1.371850	0.270950	NaN	NaN	NaN	1.176616	0.550875	0.698081	18.199098	1.862788	0.405038	NaN	NaN	NaN	9.687857	1.206832	0.425437	0.316952	0.491107	1.000000	0.716202	0.101999	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor Tu, mitochondrial OS=Homo sapiens GN=TUFM PE=1 SV=2	EFTU_HUMAN	EFTU_HUMAN	Elongation factor Tu, mitochondrial OS=Homo sapiens GN=TUFM PE=1 SV=2	100.000000	0.003950	49524.300000	3.000000	3.000000	3.000000	Spectrum40873 scans:11071,	GTVVTGTLER	G[+28]TVVTGTLER	R	G	99.600000	61.500000	48.700000	45.400000	Dimethyl (+28)	1059.590000	2.000000	-0.000560	-0.530000	272.000000	281.000000	1.557800	0.525900	0.381767	0.069300	NaN	2.807400	31512.561329	30.451357	1.066900	1.957773	0.762985	0.663827	0.080617	NaN	4.196726	21076.521639	12.968943	0.511261	7026.186676	6.865964	0.317933	0.451521	0.366887	0.594828	0.048681	0.101954	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	SODC_HUMAN	SODC_HUMAN	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	100.000000	0.049000	15917.300000	7.000000	17.000000	17.000000	Nsco_Tails_biological_replicate1_apoptosis.35805.35805.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35805"	GVADVSIEDSVISLSGDHCIIGR	G[+28]VADVSIEDSVISLSGDHC[+57]IIGR	D	T	99.700000	120.000000	57.900000	110.000000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2436.220000	3.000000	-0.002200	-0.910000	94.000000	116.000000	0.665467	0.373233	0.561000	1.519950	5.116850	2.022900	NaN	NaN	NaN	0.836329	0.541493	0.975483	1.768155	6.947994	3.023993	NaN	NaN	NaN	1.302242	3.744744	0.218734	0.450485	1.000000	0.592788	0.711795	0.101418	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	SODC_HUMAN	SODC_HUMAN	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	100.000000	0.018700	15917.300000	3.000000	6.000000	8.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.63258.63258.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=63258"	GVADVSIEDSVISLSGDHCIIGR	G[+28]VADVSIEDSVISLSGDHC[+57]IIGR	D	T	99.700000	115.000000	57.600000	110.000000	Dimethyl (+28), Carbamidomethyl (+57)	2426.210000	2.000000	-0.003600	-1.500000	94.000000	116.000000	0.665467	0.373233	0.561000	1.519950	5.116850	2.022900	NaN	NaN	NaN	0.836329	0.541493	0.975483	1.768155	6.947994	3.023993	NaN	NaN	NaN	1.302242	3.744744	0.218734	0.450485	1.000000	0.933244	0.707441	0.100931	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Zinc finger CCCH-type antiviral protein 1 OS=Homo sapiens GN=ZC3HAV1	sp|Q7Z2W4|ZCCHV_HUMAN	ZCCHV_HUMAN	Zinc finger CCCH-type antiviral protein 1 OS=Homo sapiens GN=ZC3HAV1 PE=1 SV=3	98.700000	0.004480	101414.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.8359.8359.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8359"	GVATDITSTR	G[+28]VATDITSTR	D	S	99.700000	62.600000	52.300000	33.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1057.570000	2.000000	0.000700	0.660000	434.000000	443.000000	0.219133	4.618333	22.216600	0.545200	0.204050	0.389150	NaN	NaN	NaN	0.275397	6.700358	38.630847	0.634230	0.277072	0.581733	NaN	NaN	NaN	0.454813	3.488715	0.239205	0.473690	0.751848	0.980730	0.705285	0.100843	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	NUDT5_HUMAN	NUDT5_HUMAN	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	100.000000	0.025000	24309.800000	5.000000	12.000000	19.000000	Spectrum53962 scans:26061,	GVAVIPVLQR	G[+28]VAVIPVLQR	D	T	99.100000	49.800000	46.100000	17.700000	Dimethyl (+28), Label:13C(6) (+6)	1084.710000	2.000000	-0.000590	-0.540000	61.000000	70.000000	NaN	NaN	NaN	0.626450	1.161250	1.873550	NaN	NaN	NaN	NaN	NaN	NaN	0.728748	1.576821	2.800732	NaN	NaN	NaN	0.728748	1.576821	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	NUDT5_HUMAN	NUDT5_HUMAN	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	100.000000	0.025000	24309.800000	5.000000	12.000000	19.000000	Spectrum53984 scans:26085,	GVAVIPVLQR	G[+28]VAVIPVLQR	D	T	99.500000	57.800000	46.600000	31.300000	Dimethyl (+28)	1078.690000	2.000000	-0.000960	-0.890000	61.000000	70.000000	NaN	NaN	NaN	0.626450	1.161250	1.873550	NaN	NaN	NaN	NaN	NaN	NaN	0.728748	1.576821	2.800732	NaN	NaN	NaN	0.728748	1.576821	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	NUDT5_HUMAN	NUDT5_HUMAN	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	99.800000	0.004480	24309.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.21177.21177.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21177"	GVAVIPVLQR	G[+28]VAVIPVLQR	D	T	99.700000	63.800000	51.600000	15.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1088.690000	2.000000	-0.000720	-0.660000	61.000000	70.000000	NaN	NaN	NaN	0.626450	1.161250	1.873550	NaN	NaN	NaN	NaN	NaN	NaN	0.728748	1.576821	2.800732	NaN	NaN	NaN	0.728748	1.576821	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1	HDAC1_HUMAN	HDAC1_HUMAN	Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1	94.300000	0.002500	55086.100000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.16969.16969.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16969"	GVEEAFYTTDR	G[+28]VEEAFYTTDR	D	V	98.500000	43.800000	48.700000	25.300000	Dimethyl (+28)	1314.610000	2.000000	-0.000560	-0.430000	182.000000	192.000000	0.674767	0.241733	0.359667	0.771750	0.404450	0.524000	NaN	NaN	NaN	0.848016	0.350711	0.625398	0.897775	0.549189	0.783317	NaN	NaN	NaN	0.872896	0.449950	0.018140	0.138197	0.051979	0.195255	0.690547	0.099413	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1	RUXF_HUMAN	RUXF_HUMAN	Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1	99.200000	0.007080	9707.400000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.21636.21636.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21636"	GVEEEEEDGEMRE	G[+28]VEEEEEDGEMRE	R	-	99.700000	66.300000	39.400000	49.000000	Dimethyl (+28)	1564.630000	2.000000	0.005400	3.400000	74.000000	86.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1	RUXF_HUMAN	RUXF_HUMAN	Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1	99.200000	0.007080	9707.400000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.21640.21640.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21640"	GVEEEEEDGEMRE	G[+28]VEEEEEDGEMRE	R	-	99.700000	72.300000	38.800000	53.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1574.630000	2.000000	-0.002900	-1.800000	74.000000	86.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1	RUXF_HUMAN	RUXF_HUMAN	Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1	99.900000	0.004670	9707.400000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.15305.15305.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15305"	GVEEEEEDGEMRE	G[+28]VEEEEEDGEMRE	R	-	99.600000	50.700000	36.100000	50.700000	Dimethyl (+28), Oxidation (+16)	1580.610000	2.000000	-0.009500	-6.000000	74.000000	86.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.042100	52861.700000	8.000000	16.000000	32.000000	Spectrum39772 scans:9789,	GVEPDLTR	G[+28]VEPDLTR	F	E	99.000000	53.200000	47.300000	27.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	923.500000	2.000000	-0.000190	-0.210000	406.000000	413.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=3	sp|P28062|PSB8_HUMAN	PSB8_HUMAN	Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=3	100.000000	0.002630	30336.700000	2.000000	2.000000	2.000000	Spectrum17370 scans:8151,	GVIAAVDSR	G[+28]VIAAVDSR	H	A	99.700000	65.700000	47.700000	30.900000	Dimethyl (+28)	914.520000	2.000000	-0.000640	-0.700000	83.000000	91.000000	0.581667	0.423967	0.697000	4.182250	9.565150	34.249650	NaN	NaN	NaN	0.731013	0.615098	1.211963	4.865203	12.988187	51.199118	NaN	NaN	NaN	2.798108	6.801642	0.405056	0.460891	1.000000	1.000000	0.680392	0.099115	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	PDC6I_HUMAN	PDC6I_HUMAN	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	99.800000	0.005010	96007.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.27984.27984.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27984"	GVINEEALSVTELDR	G[+28]VINEEALSVTELDR	D	V	99.600000	58.600000	55.800000	30.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1681.880000	2.000000	-0.001000	-0.600000	592.000000	606.000000	0.654433	0.412267	0.636100	0.548950	0.298600	0.538400	NaN	NaN	NaN	0.822462	0.598124	1.106069	0.638592	0.405459	0.804843	NaN	NaN	NaN	0.730527	0.501791	0.079698	0.120747	0.323831	0.132342	0.653484	0.099072	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	PDC6I_HUMAN	PDC6I_HUMAN	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	99.800000	0.005010	96007.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.27958.27958.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27958"	GVINEEALSVTELDR	G[+28]VINEEALSVTELDR	D	V	99.700000	74.600000	55.600000	56.800000	Dimethyl (+28)	1671.870000	2.000000	-0.002600	-1.600000	592.000000	606.000000	0.654433	0.412267	0.636100	0.548950	0.298600	0.538400	NaN	NaN	NaN	0.822462	0.598124	1.106069	0.638592	0.405459	0.804843	NaN	NaN	NaN	0.730527	0.501791	0.079698	0.120747	0.381451	0.132300	0.646182	0.099030	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Nuclear cap-binding protein subunit 1 OS=Homo sapiens GN=NCBP1 PE=1 SV=1	NCBP1_HUMAN	NCBP1_HUMAN	Nuclear cap-binding protein subunit 1 OS=Homo sapiens GN=NCBP1 PE=1 SV=1	88.700000	0.002330	91823.100000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.27384.27384.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27384"	GVLEEQIER	G[+28]VLEEQIER	D	L	98.500000	64.000000	52.400000	23.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1109.590000	2.000000	-0.010000	-9.300000	686.000000	694.000000	0.826467	0.080733	0.185800	0.593200	0.357650	0.602600	NaN	NaN	NaN	1.038666	0.117129	0.323074	0.690068	0.485641	0.900815	NaN	NaN	NaN	0.864367	0.301385	0.126675	0.349334	0.605458	0.581665	0.644383	0.098987	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	sp|P25789|PSA4_HUMAN	PSA4_HUMAN	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	100.000000	0.003950	29466.800000	2.000000	2.000000	3.000000	Spectrum21976 scans:8431,	GVLLAAER	G[+28]VLLAAER	D	R	99.000000	67.400000	47.300000	20.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	865.530000	2.000000	-0.000350	-0.400000	42.000000	49.000000	0.590467	0.282500	0.478333	0.706850	0.471100	0.666450	2.231686	0.892114	0.945743	0.742072	0.409856	0.831739	0.822277	0.639690	0.996263	1.492617	0.379943	0.453202	1.018989	0.476496	0.050437	0.028396	0.240737	0.047258	0.042861	0.006746	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	TCPQ_HUMAN	TCPQ_HUMAN	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	100.000000	0.004480	59603.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.13739.13739.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13739"	GVNTFKVLTR	G[+28]VNTFKVLTR	D	D	99.700000	73.400000	53.300000	52.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1207.740000	2.000000	-0.001400	-1.200000	395.000000	404.000000	19.373733	8.109900	0.401333	97.795100	61.527950	0.630800	22.633371	NaN	NaN	24.348037	11.765983	0.697850	113.764839	83.546677	0.942970	15.137860	NaN	NaN	51.083579	47.656330	0.000000	0.000000	0.000000	0.000000	0.042745	0.098903	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3	PSA5_HUMAN	PSA5_HUMAN	Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3	99.200000	0.002360	26393.300000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.23727.23727.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23727"	GVNTFSPEGR	G[+28]VNTFSPEGR	R	L	99.700000	67.400000	50.700000	42.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1100.550000	2.000000	-0.001500	-1.400000	11.000000	20.000000	0.602733	0.678767	1.110400	2.000400	9.297500	11.270450	2.851771	4.084000	6.326157	0.757488	0.984766	1.930795	2.327061	12.624754	16.847971	1.907348	1.739337	3.031511	1.663966	5.116286	0.071119	0.279622	0.338523	1.000000	0.042629	0.006740	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3	PSA5_HUMAN	PSA5_HUMAN	Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3	100.000000	0.026300	26393.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction2A.9071.9071.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9071"	GVNTFSPEGR	G[+28]VNTFSPEGR	R	L	99.000000	56.600000	50.400000	35.600000	Dimethyl (+28)	1090.540000	2.000000	-0.000140	-0.130000	11.000000	20.000000	0.602733	0.678767	1.110400	2.000400	9.297500	11.270450	2.851771	4.084000	6.326157	0.757488	0.984766	1.930795	2.327061	12.624754	16.847971	1.907348	1.739337	3.031511	1.663966	5.116286	0.071119	0.279622	0.338059	1.000000	0.042514	0.006738	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4	RL10_HUMAN	RL10_HUMAN	60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4	100.000000	0.007900	24586.600000	2.000000	6.000000	6.000000	Spectrum15874 scans:5371,	GVPDAKIR	NaN	R	I	99.000000	36.500000	45.300000	17.700000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	920.610000	3.000000	-0.000045	-0.048000	25.000000	32.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2	SYMC_HUMAN	SYMC_HUMAN	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2	100.000000	0.010000	101099.500000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.26535.26535.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26535"	GVPGCLPVLAAAGR	G[+28]VPGC[+57]LPVLAAAGR	D	A	99.700000	66.500000	55.100000	53.500000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1374.770000	2.000000	-0.002600	-1.900000	8.000000	21.000000	0.656700	0.865200	1.640867	1.145050	0.435800	0.460150	NaN	NaN	NaN	0.825311	1.255247	2.853185	1.332034	0.591758	0.687869	NaN	NaN	NaN	1.078673	0.923502	0.146869	0.219550	0.458717	0.299701	0.620197	0.098734	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2	SYMC_HUMAN	SYMC_HUMAN	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2	100.000000	0.010000	101099.500000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.26537.26537.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26537"	GVPGCLPVLAAAGR	G[+28]VPGC[+57]LPVLAAAGR	D	A	99.700000	66.400000	54.900000	46.700000	Dimethyl (+28), Carbamidomethyl (+57)	1364.760000	2.000000	-0.002200	-1.600000	8.000000	21.000000	0.656700	0.865200	1.640867	1.145050	0.435800	0.460150	NaN	NaN	NaN	0.825311	1.255247	2.853185	1.332034	0.591758	0.687869	NaN	NaN	NaN	1.078673	0.923502	0.146869	0.219550	1.000000	0.219740	0.618538	0.098692	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Homo sapiens GN=FKBP1A PE=1 SV=2	FKB1A_HUMAN	FKB1A_HUMAN	Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Homo sapiens GN=FKBP1A PE=1 SV=2	98.800000	0.014400	11932.700000	1.000000	2.000000	5.000000	Nsco_Tails_biological_replicate1_apoptosis.12594.12594.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12594"	GVQVETISPGDGR	G[+28]VQVETISPGDGR	M	T	99.700000	93.600000	53.300000	71.500000	Dimethyl (+28)	1341.690000	2.000000	-0.001300	-0.940000	2.000000	14.000000	0.595500	0.312067	0.524167	4.670000	3.884650	NaN	NaN	NaN	NaN	0.748398	0.452752	0.911436	5.432601	5.274832	NaN	NaN	NaN	NaN	3.090500	2.863792	0.412848	0.445491	0.514207	0.484138	0.611993	0.098650	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Homo sapiens GN=FKBP1A PE=1 SV=2	FKB1A_HUMAN	FKB1A_HUMAN	Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Homo sapiens GN=FKBP1A PE=1 SV=2	100.000000	0.018900	11932.700000	1.000000	2.000000	8.000000	NSco_TAILS_20150124_Protein_complex_100Kda.27383.27383.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27383"	GVQVETISPGDGR	G[+28]VQVETISPGDGR	M	T	99.700000	105.000000	53.300000	81.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1351.690000	2.000000	-0.003600	-2.600000	2.000000	14.000000	0.595500	0.312067	0.524167	4.670000	3.884650	NaN	NaN	NaN	NaN	0.748398	0.452752	0.911436	5.432601	5.274832	NaN	NaN	NaN	NaN	3.090500	2.863792	0.412848	0.445491	0.536547	0.483987	0.610378	0.098566	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=4 SV=1	E9PPJ0_HUMAN	E9PPJ0_HUMAN	Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=4 SV=1	100.000000	0.005270	98154.100000	2.000000	4.000000	4.000000	Spectrum13734 scans:1951,	GVSSESSGDR	G[+28]VSSESSGDR	R	E	99.300000	52.500000	44.300000	23.800000	Dimethyl (+28), Label:13C(6) (+6)	1013.470000	2.000000	0.000290	0.290000	324.000000	333.000000	0.730667	0.252400	0.338900	0.521250	0.398550	0.919950	NaN	NaN	NaN	0.918269	0.366186	0.589289	0.606369	0.541177	1.375215	NaN	NaN	NaN	0.762319	0.453682	0.128463	0.121287	0.166891	0.131727	0.608772	0.098524	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=4 SV=1	E9PPJ0_HUMAN	E9PPJ0_HUMAN	Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=4 SV=1	100.000000	0.005270	98154.100000	2.000000	4.000000	4.000000	Spectrum13733 scans:1950,	GVSSESSGDR	G[+28]VSSESSGDR	R	E	99.600000	59.100000	42.700000	36.300000	Dimethyl (+28)	1007.450000	2.000000	0.000340	0.340000	324.000000	333.000000	0.730667	0.252400	0.338900	0.521250	0.398550	0.919950	NaN	NaN	NaN	0.918269	0.366186	0.589289	0.606369	0.541177	1.375215	NaN	NaN	NaN	0.762319	0.453682	0.128463	0.121287	0.166829	0.154220	0.607174	0.098482	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nicotinamide phosphoribosyltransferase OS=Homo sapiens GN=NAMPT PE=1 SV=1	NAMPT_HUMAN	NAMPT_HUMAN	Nicotinamide phosphoribosyltransferase OS=Homo sapiens GN=NAMPT PE=1 SV=1	100.000000	0.002630	55504.500000	2.000000	2.000000	2.000000	Spectrum38647 scans:8480,	GVSSQETAGIGASAH	G[+28]VSSQETAGIGASAH	R	L	99.700000	94.200000	47.400000	73.300000	Dimethyl (+28)	1398.670000	2.000000	-0.002900	-2.000000	197.000000	211.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369-2|FLNB_HUMAN	FLNB_HUMAN	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	100.000000	0.002360	275645.300000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.50542.50542.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=50542"	GVYAFEYYPSTPGR	G[+28]VYAFEYYPSTPGR	D	Y	99.700000	79.800000	52.300000	67.700000	Dimethyl (+28)	1633.790000	2.000000	0.007800	4.800000	509.000000	522.000000	0.493733	0.658867	1.507433	3.349200	NaN	NaN	NaN	NaN	NaN	0.620502	0.955895	2.621167	3.896117	NaN	NaN	NaN	NaN	NaN	2.258310	0.955895	0.399455	NaN	1.000000	NaN	0.600866	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	sp|P53396|ACLY_HUMAN	ACLY_HUMAN	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	100.000000	0.014400	120824.800000	4.000000	5.000000	5.000000	Nsco_Tails_biological_replicate1_apoptosis.15596.15596.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15596"	GVYEGVAIGGDR	G[+28]VYEGVAIGGDR	D	Y	99.700000	69.900000	52.500000	43.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1229.630000	2.000000	-0.000960	-0.780000	680.000000	691.000000	0.602767	0.285767	0.481700	0.722000	0.467250	0.647150	NaN	3.554043	NaN	0.757530	0.414595	0.837593	0.839901	0.634463	0.967412	NaN	1.513633	NaN	0.798716	0.854230	0.032798	0.125954	0.063759	1.000000	0.599309	0.006692	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	sp|P53396|ACLY_HUMAN	ACLY_HUMAN	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	100.000000	0.013400	120824.800000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.13923.13923.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13923"	GVYEGVAIGGDR	G[+28]VYEGVAIGGDR	D	Y	99.600000	60.200000	52.100000	41.200000	Dimethyl (+28)	1219.620000	2.000000	0.000190	0.160000	680.000000	691.000000	0.602767	0.285767	0.481700	0.722000	0.467250	0.647150	NaN	3.554043	NaN	0.757530	0.414595	0.837593	0.839901	0.634463	0.967412	NaN	1.513633	NaN	0.798716	0.854230	0.032798	0.125954	0.063723	1.000000	0.597761	0.006689	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	RNA polymerase II-associated factor 1 homolog OS=Homo sapiens GN=PAF1 PE=1 SV=2	sp|Q8N7H5|PAF1_HUMAN	PAF1_HUMAN	RNA polymerase II-associated factor 1 homolog OS=Homo sapiens GN=PAF1 PE=1 SV=2	100.000000	0.008960	59958.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.14968.14968.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14968"	GVYYNELETR	G[+28]VYYNELETR	D	V	99.500000	54.300000	51.000000	40.000000	Dimethyl (+28)	1270.620000	2.000000	-0.000780	-0.620000	320.000000	329.000000	0.802100	1.136467	1.493667	0.638500	0.252950	0.392600	NaN	NaN	NaN	1.008043	1.648805	2.597229	0.742766	0.343472	0.586890	NaN	NaN	NaN	0.875404	0.996139	0.095731	0.369252	0.347474	1.000000	0.596220	0.098064	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	RNA polymerase II-associated factor 1 homolog OS=Homo sapiens GN=PAF1 PE=1 SV=2	sp|Q8N7H5|PAF1_HUMAN	PAF1_HUMAN	RNA polymerase II-associated factor 1 homolog OS=Homo sapiens GN=PAF1 PE=1 SV=2	100.000000	0.008960	59958.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.14963.14963.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14963"	GVYYNELETR	G[+28]VYYNELETR	D	V	99.600000	57.800000	51.200000	41.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1280.630000	2.000000	-0.001700	-1.400000	320.000000	329.000000	0.802100	1.136467	1.493667	0.638500	0.252950	0.392600	NaN	NaN	NaN	1.008043	1.648805	2.597229	0.742766	0.343472	0.586890	NaN	NaN	NaN	0.875404	0.996139	0.095731	0.369252	0.347111	1.000000	0.587140	0.098023	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.017900	52861.700000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.28182.28182.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28182"	GWDSEPFTLVER	G[+28]WDSEPFTLVER	D	D	99.300000	55.200000	51.700000	39.000000	Dimethyl (+28)	1462.710000	2.000000	-0.003400	-2.300000	110.000000	121.000000	0.681667	0.383133	0.562000	0.769500	0.555100	0.726450	NaN	NaN	NaN	0.856688	0.555856	0.977221	0.895158	0.753751	1.085956	NaN	NaN	NaN	0.875923	0.654804	0.013978	0.095477	0.028497	0.271785	0.585654	0.097981	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Homo sapiens GN=FKBP1A PE=1 SV=2	FKB1A_HUMAN	FKB1A_HUMAN	Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Homo sapiens GN=FKBP1A PE=1 SV=2	100.000000	0.014000	11932.700000	2.000000	3.000000	6.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.41384.41384.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41384"	GWEEGVAQMSVGQR	G[+28]WEEGVAQMSVGQR	R	A	98.800000	54.200000	50.900000	43.700000	Dimethyl (+28)	1560.740000	2.000000	-0.000120	-0.077000	59.000000	72.000000	0.677200	31.490500	26.414700	2.015850	1.320200	0.875150	NaN	NaN	NaN	0.851075	45.686962	45.930621	2.345034	1.792654	1.308244	NaN	NaN	NaN	1.598054	23.739808	0.278365	0.387076	0.569868	1.000000	0.584175	0.097940	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.025000	90567.200000	8.000000	16.000000	19.000000	Spectrum10364 scans:37207,	GYFEYIEENKYSR	G[+28]YFEYIEENKYSR	R	A	99.100000	34.800000	50.800000	28.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1762.880000	3.000000	-0.000660	-0.380000	256.000000	268.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	HNRPF_HUMAN	HNRPF_HUMAN	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	100.000000	0.094000	45653.800000	2.000000	7.000000	21.000000	Nsco_Tails_biological_replicate2_apoptosis.28232.28232.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28232"	GYGFTTDLFGR	G[+28]YGFTTDLFGR	D	D	99.700000	60.900000	50.900000	51.400000	Dimethyl (+28)	1260.610000	2.000000	-0.000130	-0.110000	252.000000	262.000000	1.054233	1.546533	1.167333	0.843650	0.429400	0.509200	NaN	NaN	NaN	1.324913	2.243737	2.029792	0.981416	0.583067	0.761193	NaN	NaN	NaN	1.153165	1.413402	0.094124	0.338145	0.169668	0.858978	0.581240	0.097857	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	98.900000	0.005010	16100.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.29300.29300.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29300"	GYLSLLQDSGEVR	G[+28]YLSLLQDSGEVR	D	E	99.700000	78.500000	55.100000	58.300000	Dimethyl (+28), Label:13C(6) (+6)	1469.780000	2.000000	0.000360	0.250000	97.000000	109.000000	0.529600	0.263533	0.503900	0.542100	0.615900	1.087450	1.049214	0.641871	1.330143	0.665577	0.382339	0.876195	0.630624	0.836309	1.625607	0.701745	0.273367	0.637408	0.665982	0.497338	0.000949	0.102071	0.001710	0.105949	0.039531	0.006666	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.032700	16100.700000	5.000000	11.000000	14.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.52165.52165.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=52165"	GYLSLLQDSGEVR	G[+28]YLSLLQDSGEVR	D	E	99.700000	76.900000	54.600000	57.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1473.770000	2.000000	-0.003200	-2.200000	97.000000	109.000000	0.529600	0.263533	0.503900	0.542100	0.615900	1.087450	1.049214	0.641871	1.330143	0.665577	0.382339	0.876195	0.630624	0.836309	1.625607	0.701745	0.273367	0.637408	0.665982	0.497338	0.000949	0.102071	0.001709	0.105917	0.039138	0.006664	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	98.900000	0.008960	16100.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.25380.25380.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25380"	GYLSLLQDSGEVR	G[+28]YLSLLQDSGEVR	D	E	99.700000	78.600000	54.500000	65.100000	Dimethyl (+28)	1463.760000	2.000000	-0.000150	-0.100000	97.000000	109.000000	0.529600	0.263533	0.503900	0.542100	0.615900	1.087450	1.049214	0.641871	1.330143	0.665577	0.382339	0.876195	0.630624	0.836309	1.625607	0.701745	0.273367	0.637408	0.665982	0.497338	0.000949	0.102071	0.000953	0.149006	0.039041	0.006661	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glutamate--cysteine ligase catalytic subunit OS=Homo sapiens GN=GCLC PE=1 SV=2	GSH1_HUMAN	GSH1_HUMAN	Glutamate--cysteine ligase catalytic subunit OS=Homo sapiens GN=GCLC PE=1 SV=2	100.000000	0.003950	72749.800000	2.000000	3.000000	3.000000	Spectrum41587 scans:11892,	GYVSDIDCR	G[+28]YVSDIDC[+57]R	R	W	99.100000	49.800000	44.500000	35.300000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1117.520000	2.000000	-0.001300	-1.200000	288.000000	296.000000	0.602433	3.771200	4.564933	NaN	NaN	7.475600	NaN	NaN	NaN	0.757111	5.471322	7.937634	NaN	NaN	11.175125	NaN	NaN	NaN	0.757111	5.471322	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2	sp|Q96RS6|NUDC1_HUMAN	NUDC1_HUMAN	NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2	100.000000	0.005270	66740.000000	3.000000	4.000000	4.000000	Spectrum53007 scans:25008,	HDVDALLWQPH	H[+28]DVDALLWQPH	R	S	99.600000	38.300000	48.900000	20.500000	Dimethyl (+28)	1357.680000	3.000000	-0.000760	-0.560000	459.000000	469.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L12 OS=Homo sapiens GN=RPL12 PE=1 SV=1	sp|P30050|RL12_HUMAN	RL12_HUMAN	60S ribosomal protein L12 OS=Homo sapiens GN=RPL12 PE=1 SV=1	100.000000	0.002630	17801.100000	2.000000	2.000000	2.000000	Spectrum10345 scans:37143,	HPHDIIDDINSGAVECPAS	H[+28]PHDIIDDINSGAVEC[+57]PAS	R	-	99.700000	47.800000	46.400000	39.900000	Dimethyl (+28), Carbamidomethyl (+57)	2073.940000	3.000000	-0.001500	-0.740000	147.000000	165.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	SODC_HUMAN	SODC_HUMAN	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	100.000000	0.049000	15917.300000	7.000000	17.000000	17.000000	Nsco_Tails_biological_replicate1_apoptosis.34185.34185.5 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34185"	HVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGR	H[+28]VGDLGNVTADKDGVADVSIEDSVISLSGDHC[+57]IIGR	R	T	99.700000	58.000000	61.700000	55.600000	Dimethyl (+28), Dimethyl (+28), Carbamidomethyl (+57)	3775.870000	5.000000	0.000750	0.200000	81.000000	116.000000	56.475233	36.901267	0.655400	0.882300	7.301650	20.943950	NaN	NaN	NaN	70.975535	53.536996	1.139628	1.026378	9.914658	31.308693	NaN	NaN	NaN	36.000956	31.725827	0.434887	0.002728	1.000000	0.006529	0.562855	0.096510	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3	sp|P25788|PSA3_HUMAN	PSA3_HUMAN	Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2	100.000000	0.021000	28415.700000	2.000000	4.000000	9.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.46042.46042.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46042"	HVGMAVAGLLADAR	H[+28]VGMAVAGLLADAR	R	S	98.600000	57.100000	55.000000	40.400000	Dimethyl (+28)	1407.760000	3.000000	-0.000830	-0.590000	73.000000	86.000000	0.828367	3.468433	NaN	NaN	12.662750	NaN	NaN	NaN	NaN	1.041054	5.032063	NaN	NaN	17.194311	NaN	NaN	NaN	NaN	1.041054	11.113187	NaN	0.203202	NaN	0.242057	1.000000	0.096429	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.032900	28786.800000	10.000000	21.000000	25.000000	Spectrum47918 scans:19166,	HYGGLTGL	H[+28]YGGLTGL	R	N	99.000000	50.900000	47.000000	33.300000	Dimethyl (+28)	844.440000	2.000000	-0.000042	-0.049000	91.000000	98.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	EF1G_HUMAN	EF1G_HUMAN	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	100.000000	0.017100	50101.400000	6.000000	11.000000	13.000000	Spectrum17273 scans:7957,	IAAQYSGAQVR	I[+28]AAQYSGAQVR	L	V	98.600000	50.500000	49.900000	29.000000	Dimethyl (+28), Label:13C(6) (+6)	1196.660000	2.000000	-0.000410	-0.340000	20.000000	30.000000	NaN	NaN	NaN	1.816800	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.113480	NaN	NaN	NaN	NaN	NaN	2.113480	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	EF1G_HUMAN	EF1G_HUMAN	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	100.000000	0.017100	50101.400000	6.000000	11.000000	13.000000	Spectrum17261 scans:7943,	IAAQYSGAQVR	I[+28]AAQYSGAQVR	L	V	99.700000	76.000000	49.700000	57.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1200.650000	2.000000	-0.000011	-0.009000	20.000000	30.000000	NaN	NaN	NaN	1.816800	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	2.113480	NaN	NaN	NaN	NaN	NaN	2.113480	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=4 SV=1	E9PEB5_HUMAN	E9PEB5_HUMAN	Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=4 SV=1	100.000000	0.006590	68886.100000	4.000000	5.000000	5.000000	Spectrum41292 scans:11549,	IAQITGPPDR	NaN	R	C	99.100000	53.700000	49.100000	20.700000	Dimethyl (+28)	1094.610000	2.000000	-0.000900	-0.820000	322.000000	331.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2	MPPB_HUMAN	MPPB_HUMAN	Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2	100.000000	0.003950	54349.100000	2.000000	3.000000	3.000000	Spectrum43689 scans:14302,	IDAVNAETIR	I[+28]DAVNAETIR	R	E	99.600000	62.200000	49.100000	38.900000	Dimethyl (+28)	1128.610000	2.000000	-0.000340	-0.300000	442.000000	451.000000	0.638400	0.737767	1.387600	0.278100	0.476000	11.029950	NaN	NaN	NaN	0.802312	1.070365	2.412798	0.323513	0.646344	16.488452	NaN	NaN	NaN	0.562913	0.858354	0.255994	0.154157	1.000000	1.000000	0.545597	0.096188	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.017900	72316.700000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.19336.19336.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19336"	IDEIVLVGGSTR	I[+28]DEIVLVGGSTR	D	I	98.800000	53.400000	54.700000	27.800000	Dimethyl (+28)	1285.720000	2.000000	-0.001700	-1.300000	356.000000	367.000000	10.631033	NaN	0.504867	0.876500	0.598100	0.673050	NaN	NaN	NaN	13.360605	NaN	0.877876	1.019631	0.812139	1.006129	NaN	NaN	NaN	7.190118	0.812139	0.435312	NaN	0.522314	NaN	0.540498	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1	EIF3M_HUMAN	EIF3M_HUMAN	Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1	100.000000	0.026300	42485.800000	2.000000	8.000000	20.000000	Spectrum29785 scans:14865,	IDISEEDQAAELR	IDISEEDQAAELR	F	A	99.400000	56.500000	47.800000	47.400000	Label:13C(6)15N(4) (+10)	1497.720000	2.000000	-0.000610	-0.410000	7.000000	19.000000	0.554300	0.814900	2.167067	31.771650	34.039000	0.845550	NaN	NaN	NaN	0.696619	1.182271	3.768156	36.959895	46.220382	1.263996	NaN	NaN	NaN	18.828257	23.701326	0.455723	0.425082	0.648098	0.754493	0.539239	0.096109	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1	EIF3M_HUMAN	EIF3M_HUMAN	Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1	100.000000	0.026300	42485.800000	2.000000	8.000000	20.000000	Spectrum29849 scans:14974,	IDISEEDQAAELR	IDISEEDQAAELR	F	A	99.700000	96.200000	47.500000	84.400000		1487.710000	2.000000	-0.001100	-0.750000	7.000000	19.000000	0.554300	0.814900	2.167067	31.771650	34.039000	0.845550	NaN	NaN	NaN	0.696619	1.182271	3.768156	36.959895	46.220382	1.263996	NaN	NaN	NaN	18.828257	23.701326	0.455723	0.425082	0.647833	0.808238	0.537984	0.096069	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1	EIF3M_HUMAN	EIF3M_HUMAN	Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1	100.000000	0.026300	42485.800000	2.000000	8.000000	20.000000	Spectrum29832 scans:14946,	IDISEEDQAAELR	IDISEEDQAAELR	F	A	99.700000	112.000000	48.600000	96.300000	Label:13C(6) (+6)	1493.730000	2.000000	-0.001700	-1.200000	7.000000	19.000000	0.554300	0.814900	2.167067	31.771650	34.039000	0.845550	NaN	NaN	NaN	0.696619	1.182271	3.768156	36.959895	46.220382	1.263996	NaN	NaN	NaN	18.828257	23.701326	0.455723	0.425082	0.624550	0.807796	0.536736	0.096029	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tyrosine-protein kinase ZAP-70 OS=Homo sapiens GN=ZAP70 PE=1 SV=1	sp|P43403|ZAP70_HUMAN	ZAP70_HUMAN	Tyrosine-protein kinase ZAP-70 OS=Homo sapiens GN=ZAP70 PE=1 SV=1	100.000000	0.003950	69856.300000	3.000000	3.000000	3.000000	Spectrum46236 scans:17215,	IDTLNSDGYTPEPAR	I[+28]DTLNSDGYTPEPAR	R	I	99.300000	56.600000	48.800000	54.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1685.810000	2.000000	-0.002400	-1.400000	284.000000	298.000000	0.632867	NaN	NaN	0.062500	0.069050	5.525050	NaN	NaN	NaN	0.795358	NaN	NaN	0.072706	0.093761	8.259287	NaN	NaN	NaN	0.434032	0.093761	0.441966	NaN	0.930031	NaN	0.534257	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.035600	26545.800000	9.000000	20.000000	27.000000	Spectrum53545 scans:25600,	IDVGAGVIDEDYR	I[+28]DVGAGVIDEDYR	F	G	98.900000	52.000000	48.700000	36.400000	Dimethyl (+28)	1448.710000	2.000000	-0.001200	-0.860000	182.000000	194.000000	2.035467	1.522400	0.679667	2.546000	2.275050	0.783650	NaN	NaN	1.271914	2.558083	2.208724	1.181823	2.961757	3.089212	1.171463	NaN	NaN	0.609505	2.759920	2.648968	0.046474	0.104844	0.097737	0.111461	0.531801	0.095949	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5	RL4_HUMAN	RL4_HUMAN	60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5	100.000000	0.009220	47681.100000	6.000000	7.000000	7.000000	Spectrum13323 scans:49091,	IEEVPELPLVVED	I[+28]EEVPELPLVVED	R	K	99.100000	55.700000	51.300000	42.200000	Dimethyl (+28)	1507.800000	2.000000	-0.001000	-0.660000	144.000000	156.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5	RL4_HUMAN	RL4_HUMAN	60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5	100.000000	0.009220	47681.100000	6.000000	7.000000	7.000000	Spectrum13194 scans:48949,	IEEVPELPLVVEDKVEGY	I[+28]EEVPELPLVVEDKVEGY	R	K	99.600000	70.200000	54.200000	57.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	2120.140000	2.000000	-0.002800	-1.300000	144.000000	161.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	sp|P53396|ACLY_HUMAN	ACLY_HUMAN	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	100.000000	0.012500	120824.800000	3.000000	4.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.31291.31291.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31291"	IEFPPPFGR	I[+28]EFPPPFGR	D	E	99.700000	57.900000	52.800000	31.300000	Dimethyl (+28)	1086.590000	2.000000	-0.000520	-0.480000	236.000000	244.000000	0.732633	0.299800	0.406333	1.389950	1.052400	0.766400	NaN	NaN	NaN	0.920741	0.434955	0.706544	1.616926	1.429018	1.145676	NaN	NaN	NaN	1.268833	0.931986	0.170457	0.311902	0.333796	0.576918	0.528158	0.094809	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.015800	72316.700000	7.000000	10.000000	12.000000	Spectrum65711 scans:39969,	IEIESFYEGEDFSETLTR	I[+28]EIESFYEGEDFSETLTR	R	A	99.700000	87.000000	47.800000	77.100000	Dimethyl (+28)	2192.010000	2.000000	-0.006700	-3.000000	307.000000	324.000000	1.843167	NaN	NaN	NaN	NaN	116.647000	NaN	NaN	NaN	2.316409	NaN	NaN	NaN	NaN	174.373272	NaN	NaN	NaN	2.316409	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.035600	26545.800000	9.000000	20.000000	27.000000	Spectrum63772 scans:37809,	IFYPEIEEVQALDDTER	I[+28]FYPEIEEVQALDDTER	R	G	99.700000	104.000000	51.500000	88.100000	Dimethyl (+28), Label:13C(6) (+6)	2100.030000	2.000000	-0.001800	-0.870000	225.000000	241.000000	0.637567	0.313433	0.492533	NaN	0.502250	0.791550	NaN	NaN	NaN	0.801265	0.454735	0.856431	NaN	0.681988	1.183272	NaN	NaN	NaN	0.801265	0.568361	NaN	0.125617	NaN	0.222166	1.000000	0.094191	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.035600	26545.800000	9.000000	20.000000	27.000000	Spectrum63533 scans:37543,	IFYPEIEEVQALDDTER	I[+28]FYPEIEEVQALDDTER	R	G	99.700000	110.000000	50.700000	101.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2104.020000	2.000000	-0.003900	-1.800000	225.000000	241.000000	0.637567	0.313433	0.492533	NaN	0.502250	0.791550	NaN	NaN	NaN	0.801265	0.454735	0.856431	NaN	0.681988	1.183272	NaN	NaN	NaN	0.801265	0.568361	NaN	0.125617	NaN	0.222053	1.000000	0.094153	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.035600	26545.800000	9.000000	20.000000	27.000000	Spectrum63643 scans:37666,	IFYPEIEEVQALDDTER	I[+28]FYPEIEEVQALDDTER	R	G	99.700000	130.000000	50.600000	121.000000	Dimethyl (+28)	2094.010000	2.000000	-0.002400	-1.200000	225.000000	241.000000	0.637567	0.313433	0.492533	NaN	0.502250	0.791550	NaN	NaN	NaN	0.801265	0.454735	0.856431	NaN	0.681988	1.183272	NaN	NaN	NaN	0.801265	0.568361	NaN	0.125617	NaN	0.154352	1.000000	0.094114	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2	RS15A_HUMAN	RS15A_HUMAN	40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2	100.000000	0.005270	14822.000000	1.000000	3.000000	4.000000	Spectrum20728 scans:17800,	IGEFEIIDDHR	I[+28]GEFEIIDDHR	Y	A	99.700000	48.600000	49.600000	37.400000	Dimethyl (+28), Label:13C(6) (+6)	1376.700000	3.000000	-0.000720	-0.520000	47.000000	57.000000	0.446633	0.098633	0.229033	NaN	NaN	NaN	NaN	NaN	NaN	0.561309	0.143099	0.398250	NaN	NaN	NaN	NaN	NaN	NaN	0.561309	0.143099	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2	RS15A_HUMAN	RS15A_HUMAN	40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2	100.000000	0.005270	14822.000000	1.000000	3.000000	4.000000	Spectrum10232 scans:36745,	IGEFEIIDDHR	I[+28]GEFEIIDDHR	Y	A	99.700000	71.800000	48.800000	48.700000	Dimethyl (+28)	1370.680000	3.000000	-0.000990	-0.720000	47.000000	57.000000	0.446633	0.098633	0.229033	NaN	NaN	NaN	NaN	NaN	NaN	0.561309	0.143099	0.398250	NaN	NaN	NaN	NaN	NaN	NaN	0.561309	0.143099	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.013900	69396.600000	3.000000	5.000000	6.000000	Nsco_Tails_biological_replicate_3_fraction6A.36285.36285.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36285"	IGFPWSEIR	IGFPWSEIR	K	N	99.700000	71.000000	52.100000	49.000000		1103.580000	2.000000	0.001400	1.300000	238.000000	246.000000	0.618467	0.344733	0.549100	4.008200	0.521900	1.671950	NaN	NaN	NaN	0.777261	0.500145	0.954790	4.662731	0.708670	2.499365	NaN	NaN	NaN	2.719996	0.604408	0.394845	0.108749	0.796113	0.214530	0.515219	0.091545	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1	ROA0_HUMAN	ROA0_HUMAN	Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1	100.000000	0.005270	30822.500000	3.000000	3.000000	4.000000	Spectrum20125 scans:14964,	IGGLNVQTSESGLR	I[+28]GGLNVQTSESGLR	F	G	98.700000	52.200000	51.200000	39.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1467.790000	2.000000	-0.001500	-1.000000	11.000000	24.000000	0.254433	0.806733	5.148733	0.170150	0.983100	9.597950	NaN	NaN	NaN	0.319760	1.170423	8.952762	0.197935	1.334918	14.347784	NaN	NaN	NaN	0.258848	1.252670	0.147134	0.041739	0.173011	0.082292	0.514074	0.091508	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum21035 scans:20902,	IGGLSFETTEESLR	I[+28]GGLSFETTEESLR	F	N	99.700000	73.100000	51.000000	63.000000	Dimethyl (+28), Label:13C(6) (+6)	1571.810000	2.000000	-0.001200	-0.730000	25.000000	38.000000	0.641133	0.311833	0.565867	0.506800	0.247650	0.820400	NaN	NaN	NaN	0.805748	0.452413	0.983945	0.589559	0.336275	1.226400	NaN	NaN	NaN	0.697653	0.394344	0.097859	0.093076	0.115031	0.307594	0.512934	0.091364	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum21036 scans:20914,	IGGLSFETTEESLR	I[+28]GGLSFETTEESLR	F	N	99.700000	97.200000	50.300000	71.600000	Dimethyl (+28)	1565.790000	2.000000	-0.000200	-0.130000	25.000000	38.000000	0.641133	0.311833	0.565867	0.506800	0.247650	0.820400	NaN	NaN	NaN	0.805748	0.452413	0.983945	0.589559	0.336275	1.226400	NaN	NaN	NaN	0.697653	0.394344	0.097859	0.093076	0.114992	0.307302	0.510670	0.091004	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=4 SV=1	E9PEB5_HUMAN	E9PEB5_HUMAN	Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=4 SV=1	100.000000	0.006590	68886.100000	4.000000	5.000000	5.000000	Spectrum53101 scans:25112,	IGGNEGIDVPIPR	I[+28]GGNEGIDVPIPR	R	F	99.500000	62.400000	50.800000	43.000000	Dimethyl (+28)	1363.740000	2.000000	-0.001400	-1.000000	272.000000	284.000000	1.019300	0.699100	0.951767	181.437300	2.552400	0.019100	NaN	NaN	NaN	1.281010	1.014266	1.654959	211.065639	3.465816	0.028552	NaN	NaN	NaN	106.173325	2.240041	0.418890	0.318755	0.492061	0.389465	0.509545	0.090933	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369|FLNB_HUMAN	FLNB_HUMAN	Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2	100.000000	0.092200	278140.800000	5.000000	7.000000	7.000000	Nsco_Tails_biological_replicate_3_fraction2A.19266.19266.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19266"	IGNLQTDLSDGLR	I[+28]GNLQTDLSDGLR	R	L	99.700000	116.000000	54.700000	88.800000	Dimethyl (+28)	1428.760000	2.000000	-0.001100	-0.760000	37.000000	49.000000	0.883967	2.170700	1.868033	NaN	3.056100	NaN	NaN	NaN	44.006843	1.110930	3.149289	3.248189	NaN	4.149773	NaN	NaN	NaN	21.088194	1.110930	3.649531	NaN	0.086721	NaN	1.000000	1.000000	0.090897	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369|FLNB_HUMAN	FLNB_HUMAN	Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2	100.000000	0.092200	278140.800000	5.000000	7.000000	7.000000	Nsco_Tails_biological_replicate_3_fraction2A.19265.19265.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19265"	IGNLQTDLSDGLR	I[+28]GNLQTDLSDGLR	R	L	99.700000	131.000000	54.900000	104.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1438.770000	2.000000	-0.000820	-0.570000	37.000000	49.000000	0.883967	2.170700	1.868033	NaN	3.056100	NaN	NaN	NaN	44.006843	1.110930	3.149289	3.248189	NaN	4.149773	NaN	NaN	NaN	21.088194	1.110930	3.649531	NaN	0.086721	NaN	1.000000	1.000000	0.089908	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	H0YGR4_HUMAN	H0YGR4_HUMAN	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	100.000000	0.014500	22099.800000	3.000000	8.000000	11.000000	Spectrum50587 scans:22223,	IIDVSTVKELCR	I[+28]IDVSTVKELC[+57]R	R	R	99.500000	41.100000	51.400000	27.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1505.860000	3.000000	0.001700	1.100000	121.000000	132.000000	33.257033	0.103233	0.218600	0.811850	148.611800	0.420550	NaN	NaN	NaN	41.795945	0.149773	0.380108	0.944423	201.794827	0.628672	NaN	NaN	NaN	21.370184	100.972300	0.440054	0.490466	0.482460	1.000000	0.506200	0.089873	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	H0YGR4_HUMAN	H0YGR4_HUMAN	Oligoribonuclease, mitochondrial (Fragment) OS=Homo sapiens GN=REXO2 PE=4 SV=1	100.000000	0.014500	22099.800000	3.000000	8.000000	11.000000	Spectrum50530 scans:22159,	IIDVSTVKELCR	I[+28]IDVSTVKELC[+57]R	R	R	99.700000	47.800000	50.900000	31.100000	Dimethyl (+28), Dimethyl:2H(4) (+32), Carbamidomethyl (+57), Label:13C(6) (+6)	1497.880000	3.000000	0.001100	0.760000	121.000000	132.000000	33.257033	0.103233	0.218600	0.811850	148.611800	0.420550	NaN	NaN	NaN	41.795945	0.149773	0.380108	0.944423	201.794827	0.628672	NaN	NaN	NaN	21.370184	100.972300	0.440054	0.490466	0.441709	0.492453	0.501808	0.089629	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	RS8_HUMAN	RS8_HUMAN	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	100.000000	0.015800	24188.400000	4.000000	9.000000	12.000000	Spectrum10920 scans:39164,	IIDVVYNASNNELVR	I[+28]IDVVYNASNNELVR	R	T	99.700000	88.600000	52.600000	67.700000	Dimethyl (+28), Label:13C(6) (+6)	1751.950000	2.000000	-0.005400	-3.100000	78.000000	92.000000	0.473167	0.224267	0.474100	1.312300	7.106950	3.285550	NaN	NaN	NaN	0.594655	0.325370	0.824378	1.526596	9.650282	4.911503	NaN	NaN	NaN	1.060625	4.987826	0.263529	0.478544	1.000000	0.536352	0.500722	0.089595	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	RS8_HUMAN	RS8_HUMAN	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	100.000000	0.009330	24188.400000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.46473.46473.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46473"	IIDVVYNASNNELVR	I[+28]IDVVYNASNNELVR	R	T	99.100000	68.000000	56.600000	57.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1755.930000	2.000000	-0.014000	-8.000000	78.000000	92.000000	0.473167	0.224267	0.474100	1.312300	7.106950	3.285550	NaN	NaN	NaN	0.594655	0.325370	0.824378	1.526596	9.650282	4.911503	NaN	NaN	NaN	1.060625	4.987826	0.263529	0.478544	1.000000	0.884210	0.499640	0.089491	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	RS8_HUMAN	RS8_HUMAN	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	100.000000	0.009330	24188.400000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.46476.46476.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46476"	IIDVVYNASNNELVR	I[+28]IDVVYNASNNELVR	R	T	99.700000	81.900000	56.700000	70.300000	Dimethyl (+28)	1745.930000	2.000000	-0.005700	-3.300000	78.000000	92.000000	0.473167	0.224267	0.474100	1.312300	7.106950	3.285550	NaN	NaN	NaN	0.594655	0.325370	0.824378	1.526596	9.650282	4.911503	NaN	NaN	NaN	1.060625	4.987826	0.263529	0.478544	1.000000	1.000000	0.496423	0.089111	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Chromobox protein homolog 3 OS=Homo sapiens GN=CBX3 PE=1 SV=4	CBX3_HUMAN	CBX3_HUMAN	Chromobox protein homolog 3 OS=Homo sapiens GN=CBX3 PE=1 SV=4	100.000000	0.003950	20794.000000	2.000000	3.000000	3.000000	Spectrum66323 scans:40670,	IIGATDSSGELMFL	I[+28]IGATDSSGELMFL	R	M	99.200000	63.100000	49.200000	35.200000	Dimethyl (+28), Oxidation (+16)	1496.740000	2.000000	-0.003800	-2.500000	126.000000	139.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.030300	53123.900000	9.000000	17.000000	23.000000	Spectrum44417 scans:15150,	IIIDGGNSEYR	I[+28]IIDGGNSEYR	D	D	99.300000	67.800000	48.900000	33.700000	Dimethyl (+28)	1263.640000	2.000000	-0.003600	-2.900000	97.000000	107.000000	0.453233	0.577633	28.552700	0.720100	0.510850	0.709400	NaN	NaN	NaN	0.569603	0.838040	49.648235	0.837691	0.693666	1.060468	NaN	NaN	NaN	0.703647	0.765853	0.119839	0.059829	0.182868	0.134811	0.494302	0.088974	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.030300	53123.900000	9.000000	17.000000	23.000000	Spectrum44416 scans:15149,	IIIDGGNSEYR	I[+28]IIDGGNSEYR	D	D	99.500000	59.200000	49.600000	40.100000	Dimethyl (+28), Label:13C(6) (+6)	1269.670000	2.000000	-0.000690	-0.540000	97.000000	107.000000	0.453233	0.577633	28.552700	0.720100	0.510850	0.709400	NaN	NaN	NaN	0.569603	0.838040	49.648235	0.837691	0.693666	1.060468	NaN	NaN	NaN	0.703647	0.765853	0.119839	0.059829	0.371288	0.060211	0.493248	0.088026	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.015800	72316.700000	7.000000	10.000000	12.000000	Spectrum10698 scans:38396,	IINEPTAAAIAY	I[+28]INEPTAAAIAY	R	G	98.900000	52.700000	50.200000	36.300000	Dimethyl (+28)	1273.690000	2.000000	-0.000980	-0.770000	198.000000	209.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.008640	72316.700000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.26946.26946.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26946"	IINEPTAAAIAYGLDKR	I[+28]INEPTAAAIAYGLDKR	R	E	99.500000	84.200000	57.600000	78.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1881.100000	3.000000	0.000380	0.200000	198.000000	214.000000	3.683633	3.042200	0.825433	1.041700	1.947600	2.010700	NaN	NaN	NaN	4.629425	4.413676	1.435287	1.211807	2.644579	3.005755	NaN	NaN	NaN	2.920616	3.529128	0.337014	0.156343	1.000000	0.449098	0.491154	0.087826	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.008640	72316.700000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.26998.26998.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26998"	IINEPTAAAIAYGLDKR	I[+28]INEPTAAAIAYGLDKR	R	E	99.700000	105.000000	58.000000	89.700000	Dimethyl (+28), Dimethyl (+28)	1871.050000	3.000000	0.000420	0.230000	198.000000	214.000000	3.683633	3.042200	0.825433	1.041700	1.947600	2.010700	NaN	NaN	NaN	4.629425	4.413676	1.435287	1.211807	2.644579	3.005755	NaN	NaN	NaN	2.920616	3.529128	0.337014	0.156343	1.000000	0.448727	0.490113	0.087726	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.015800	72316.700000	7.000000	10.000000	12.000000	Spectrum56696 scans:29250,	IINEPTAAAIAYGLDKR	I[+28]INEPTAAAIAYGLDKR	R	E	99.700000	101.000000	53.100000	86.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1889.080000	3.000000	0.003300	1.800000	198.000000	214.000000	3.683633	3.042200	0.825433	1.041700	1.947600	2.010700	NaN	NaN	NaN	4.629425	4.413676	1.435287	1.211807	2.644579	3.005755	NaN	NaN	NaN	2.920616	3.529128	0.337014	0.156343	0.745340	1.000000	0.489077	0.086642	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	PPIA_HUMAN	PPIA_HUMAN	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	100.000000	0.124000	17994.900000	3.000000	14.000000	43.000000	Nsco_Tails_biological_replicate1_apoptosis.24639.24639.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24639"	IIPGFMCQGGDFTR	IIPGFMC[+57]QGGDFTR	R	H	99.200000	51.700000	50.700000	51.700000	Dimethyl (+28), Oxidation (+16), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1651.770000	2.000000	-0.003200	-1.900000	56.000000	69.000000	0.521267	0.258500	0.498000	0.914850	0.398000	0.440450	NaN	NaN	NaN	0.655105	0.375036	0.865936	1.064243	0.540430	0.658420	NaN	NaN	NaN	0.859674	0.457733	0.148725	0.113788	0.308105	1.000000	0.488045	0.086609	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	PPIA_HUMAN	PPIA_HUMAN	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	100.000000	0.124000	17994.900000	3.000000	14.000000	43.000000	Nsco_Tails_biological_replicate1_apoptosis.29913.29913.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29913"	IIPGFMCQGGDFTR	IIPGFMC[+57]QGGDFTR	R	H	99.500000	55.400000	51.300000	53.800000	Dimethyl (+28), Carbamidomethyl (+57)	1625.770000	2.000000	-0.002500	-1.600000	56.000000	69.000000	0.521267	0.258500	0.498000	0.914850	0.398000	0.440450	NaN	NaN	NaN	0.655105	0.375036	0.865936	1.064243	0.540430	0.658420	NaN	NaN	NaN	0.859674	0.457733	0.148725	0.113788	0.307921	1.000000	0.487018	0.086577	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	PPIA_HUMAN	PPIA_HUMAN	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	100.000000	0.124000	17994.900000	3.000000	14.000000	43.000000	Nsco_Tails_biological_replicate1_apoptosis.24602.24602.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24602"	IIPGFMCQGGDFTR	IIPGFMC[+57]QGGDFTR	R	H	99.700000	69.700000	50.200000	62.200000	Dimethyl (+28), Oxidation (+16), Carbamidomethyl (+57)	1641.760000	2.000000	-0.004300	-2.600000	56.000000	69.000000	0.521267	0.258500	0.498000	0.914850	0.398000	0.440450	NaN	NaN	NaN	0.655105	0.375036	0.865936	1.064243	0.540430	0.658420	NaN	NaN	NaN	0.859674	0.457733	0.148725	0.113788	0.501531	1.000000	0.485994	0.086126	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	PPIA_HUMAN	PPIA_HUMAN	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	100.000000	0.028000	17994.900000	3.000000	11.000000	12.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.43447.43447.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43447"	IIPGFMCQGGDFTR	IIPGFMC[+57]QGGDFTR	R	H	99.600000	60.100000	48.300000	60.100000	Oxidation (+16), Carbamidomethyl (+57)	1613.730000	2.000000	-0.006500	-4.000000	56.000000	69.000000	0.521267	0.258500	0.498000	0.914850	0.398000	0.440450	NaN	NaN	NaN	0.655105	0.375036	0.865936	1.064243	0.540430	0.658420	NaN	NaN	NaN	0.859674	0.457733	0.148725	0.113788	0.501044	0.409167	0.484976	0.085870	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.005010	64268.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.21045.21045.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21045"	IISIAEDEDLR	I[+28]ISIAEDEDLR	D	V	99.700000	96.500000	54.300000	64.100000	Dimethyl (+28), Label:13C(6) (+6)	1306.710000	2.000000	0.000021	0.016000	170.000000	180.000000	0.576400	0.351533	0.641400	0.692600	0.755450	1.137050	NaN	NaN	14.152900	0.724394	0.510011	1.115284	0.805700	1.025799	1.699753	NaN	NaN	6.782107	0.765047	0.767905	0.033797	0.206269	0.075907	0.236926	0.483961	0.085838	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.007000	64268.600000	2.000000	2.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.39305.39305.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39305"	IISIAEDEDLR	I[+28]ISIAEDEDLR	D	V	99.700000	70.400000	53.800000	53.700000	Dimethyl (+28)	1300.690000	2.000000	-0.001700	-1.300000	170.000000	180.000000	0.576400	0.351533	0.641400	0.692600	0.755450	1.137050	NaN	NaN	14.152900	0.724394	0.510011	1.115284	0.805700	1.025799	1.699753	NaN	NaN	6.782107	0.765047	0.767905	0.033797	0.206269	0.064758	0.251494	0.480942	0.085774	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	99.800000	0.013400	64268.600000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.18463.18463.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18463"	IISIAEDEDLR	I[+28]ISIAEDEDLR	D	V	99.700000	76.000000	54.000000	47.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1310.700000	2.000000	-0.000690	-0.530000	170.000000	180.000000	0.576400	0.351533	0.641400	0.692600	0.755450	1.137050	NaN	NaN	14.152900	0.724394	0.510011	1.115284	0.805700	1.025799	1.699753	NaN	NaN	6.782107	0.765047	0.767905	0.033797	0.206269	0.064722	0.251406	0.478951	0.085743	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.032900	140943.500000	9.000000	17.000000	25.000000	Spectrum19882 scans:13981,	IISQLDPVNER	I[+28]ISQLDPVNER	A	M	99.600000	63.700000	50.400000	27.700000	Dimethyl (+28)	1310.720000	2.000000	-0.000960	-0.730000	1120.000000	1130.000000	2.567500	1.038900	0.690000	0.201150	0.217100	94.238500	NaN	NaN	NaN	3.226719	1.507254	1.199791	0.233997	0.294793	140.875252	NaN	NaN	NaN	1.730358	0.901023	0.453914	0.377040	1.000000	0.459386	0.474044	0.085552	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	sp|P11413-2|G6PD_HUMAN	G6PD_HUMAN	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	100.000000	0.022400	63810.100000	5.000000	10.000000	17.000000	Spectrum45069 scans:15890,	IIVEKPFGR	NaN	R	D	98.600000	29.000000	45.600000	8.870000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1123.730000	3.000000	-0.001500	-1.400000	167.000000	175.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=4 SV=1	E7EX90_HUMAN	E7EX90_HUMAN	Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=4 SV=1	100.000000	0.006590	139078.900000	3.000000	5.000000	5.000000	Spectrum17507 scans:8419,	IKGEELSEANVR	I[+28]KGEELSEANVR	K	L	99.000000	34.200000	51.100000	21.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1417.790000	3.000000	0.000450	0.310000	944.000000	955.000000	NaN	NaN	NaN	0.708700	2.342600	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.824429	3.180936	NaN	NaN	NaN	NaN	0.824429	3.180936	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	AL9A1_HUMAN	AL9A1_HUMAN	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	100.000000	0.018400	53784.000000	4.000000	9.000000	14.000000	Spectrum53396 scans:25436,	IKIGDPLLEDTR	I[+28]KIGDPLLEDTR	R	M	99.700000	44.800000	50.700000	21.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1442.850000	3.000000	-0.000590	-0.410000	315.000000	326.000000	3.644067	5.160300	0.713100	6.587600	NaN	NaN	NaN	NaN	NaN	4.579699	7.486652	1.239958	7.663342	NaN	NaN	NaN	NaN	NaN	6.121520	7.486652	0.157078	NaN	1.000000	NaN	0.463594	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	AL9A1_HUMAN	AL9A1_HUMAN	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	100.000000	0.018400	53784.000000	4.000000	9.000000	14.000000	Spectrum53511 scans:25563,	IKIGDPLLEDTR	I[+28]KIGDPLLEDTR	R	M	99.700000	54.700000	49.700000	30.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1434.870000	3.000000	0.000840	0.580000	315.000000	326.000000	3.644067	5.160300	0.713100	6.587600	NaN	NaN	NaN	NaN	NaN	4.579699	7.486652	1.239958	7.663342	NaN	NaN	NaN	NaN	NaN	6.121520	7.486652	0.157078	NaN	1.000000	NaN	0.462667	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2	sp|P63208|SKP1_HUMAN	SKP1_HUMAN	S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2	98.800000	0.002630	18640.300000	1.000000	2.000000	2.000000	Spectrum44269 scans:14980,	IKNDFTEEEEAQVR	I[+28]KNDFTEEEEAQVR	N	K	99.700000	47.700000	51.100000	30.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1780.900000	3.000000	-0.000140	-0.081000	141.000000	154.000000	17.198867	6.176700	0.502100	NaN	NaN	NaN	NaN	NaN	NaN	21.614763	8.961263	0.873066	NaN	NaN	NaN	NaN	NaN	NaN	21.614763	8.961263	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleoside diphosphate kinase OS=Homo sapiens GN=NME1-NME2 PE=2 SV=1	sp|P22392-2|NDKB_HUMAN	NDKB_HUMAN	Isoform 3 of Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2	100.000000	0.048700	30119.300000	6.000000	14.000000	37.000000	Spectrum34406 scans:3590,	IKPDGVQR	NaN	A	G	99.000000	38.000000	46.400000	17.100000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	977.630000	3.000000	-0.000035	-0.035000	11.000000	18.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1	EIF3A_HUMAN	EIF3A_HUMAN	Eukaryotic translation initiation factor 3 subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1	100.000000	0.007900	166556.900000	4.000000	6.000000	6.000000	Spectrum19492 scans:12835,	IKSLEDVVR	I[+28]KSLEDVVR	N	A	99.700000	38.100000	46.500000	23.400000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1123.720000	3.000000	-0.000860	-0.770000	83.000000	91.000000	6.424667	10.179300	0.621167	382.838800	NaN	NaN	NaN	NaN	NaN	8.074232	14.768304	1.080102	445.355591	NaN	NaN	NaN	NaN	NaN	226.714912	14.768304	0.067575	NaN	0.077491	NaN	0.459907	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1	EIF3A_HUMAN	EIF3A_HUMAN	Eukaryotic translation initiation factor 3 subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1	100.000000	0.007900	166556.900000	4.000000	6.000000	6.000000	Spectrum19489 scans:12826,	IKSLEDVVR	I[+28]KSLEDVVR	N	A	99.700000	43.600000	48.200000	20.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1131.700000	3.000000	-0.000910	-0.810000	83.000000	91.000000	6.424667	10.179300	0.621167	382.838800	NaN	NaN	NaN	NaN	NaN	8.074232	14.768304	1.080102	445.355591	NaN	NaN	NaN	NaN	NaN	226.714912	14.768304	0.067575	NaN	0.077465	NaN	0.457181	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.032900	140943.500000	9.000000	17.000000	25.000000	Spectrum8718 scans:32303,	ILAKLPIEPR	NaN	R	F	99.200000	27.000000	42.600000	17.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1214.840000	3.000000	-0.000025	-0.020000	854.000000	863.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Endoplasmic reticulum aminopeptidase 1 OS=Homo sapiens GN=ERAP1	sp|Q9NZ08-2|ERAP1_HUMAN	ERAP1_HUMAN	Isoform 2 of Endoplasmic reticulum aminopeptidase 1 OS=Homo sapiens GN=ERAP1	100.000000	0.002630	107826.400000	2.000000	2.000000	2.000000	Spectrum47842 scans:19080,	ILASTQFEPTAAR	I[+28]LASTQFEPTAAR	R	M	99.700000	74.400000	51.200000	42.500000	Dimethyl (+28), Label:13C(6) (+6)	1437.790000	2.000000	-0.002000	-1.400000	176.000000	188.000000	11.203700	25.403300	2.359967	NaN	NaN	19.989050	NaN	NaN	NaN	14.080307	36.855547	4.103576	NaN	NaN	29.881232	NaN	NaN	NaN	14.080307	36.855547	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	TKT_HUMAN	TKT_HUMAN	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	100.000000	0.037400	67861.400000	4.000000	8.000000	13.000000	Nsco_Tails_biological_replicate1_apoptosis.27030.27030.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27030"	ILATPPQEDAPSVDIANIR	I[+28]LATPPQEDAPSVDIANIR	K	M	99.700000	82.000000	58.400000	76.800000	Dimethyl (+28)	2047.090000	2.000000	-0.002900	-1.400000	284.000000	302.000000	0.965833	1.834233	1.714000	6.987300	1.977450	2.761750	NaN	NaN	NaN	1.213816	2.661137	2.980351	8.128312	2.685111	4.128485	NaN	NaN	NaN	4.671064	2.673124	0.405630	0.002855	0.472010	0.035252	0.451823	0.084244	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	TKT_HUMAN	TKT_HUMAN	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	100.000000	0.006590	67861.400000	3.000000	5.000000	5.000000	Spectrum56745 scans:29318,	ILATPPQEDAPSVDIANIR	I[+28]LATPPQEDAPSVDIANIR	K	M	99.200000	56.000000	54.000000	41.600000	Dimethyl (+28), Label:13C(6) (+6)	2053.120000	3.000000	0.007500	3.700000	284.000000	302.000000	0.965833	1.834233	1.714000	6.987300	1.977450	2.761750	NaN	NaN	NaN	1.213816	2.661137	2.980351	8.128312	2.685111	4.128485	NaN	NaN	NaN	4.671064	2.673124	0.405630	0.002855	0.471852	0.007745	0.450942	0.084152	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1	sp|Q9H871|RMD5A_HUMAN	RMD5A_HUMAN	Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1	100.000000	0.005270	43975.100000	2.000000	3.000000	4.000000	Spectrum18812 scans:11334,	ILEALKVR	NaN	R	V	99.000000	37.300000	43.400000	14.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1014.690000	3.000000	0.000160	0.150000	160.000000	167.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP synthase subunit alpha, mitochondrial OS=Homo sapiens GN=ATP5A1 PE=1 SV=1	ATPA_HUMAN	ATPA_HUMAN	ATP synthase subunit alpha, mitochondrial OS=Homo sapiens GN=ATP5A1 PE=1 SV=1	100.000000	0.001320	59734.100000	1.000000	1.000000	1.000000	Spectrum9133 scans:33352,	ILGADTSVDLEETGR	I[+28]LGADTSVDLEETGR	R	V	99.200000	64.500000	50.300000	50.600000	Dimethyl (+28)	1602.810000	2.000000	-0.004000	-2.500000	59.000000	73.000000	0.302867	0.082333	0.275300	0.008100	0.009100	4.795800	NaN	NaN	NaN	0.380629	0.119451	0.478699	0.009423	0.012357	7.169146	NaN	NaN	NaN	0.195026	0.065904	0.484243	0.434378	0.957450	0.987741	0.448320	0.084091	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	RS11_HUMAN	RS11_HUMAN	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	100.000000	0.026300	18413.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction2A.9317.9317.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9317"	ILSGVVTK	I[+28]LSGVVTK	R	M	99.000000	57.500000	49.300000	17.900000	Dimethyl (+28), Dimethyl (+28)	871.570000	2.000000	0.000240	0.270000	72.000000	79.000000	3.116133	1.137267	0.395400	2.276050	0.127400	0.273400	NaN	NaN	NaN	3.916216	1.649966	0.687533	2.647724	0.172992	0.408700	NaN	NaN	NaN	3.281970	0.911479	0.121530	0.433496	0.253430	0.985089	0.447453	0.083847	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	RS11_HUMAN	RS11_HUMAN	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	100.000000	0.015800	18413.300000	4.000000	11.000000	12.000000	Spectrum17927 scans:9310,	ILSGVVTK	I[+28]LSGVVTK	R	M	99.000000	61.800000	44.700000	34.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	879.590000	2.000000	-0.000099	-0.110000	72.000000	79.000000	3.116133	1.137267	0.395400	2.276050	0.127400	0.273400	NaN	NaN	NaN	3.916216	1.649966	0.687533	2.647724	0.172992	0.408700	NaN	NaN	NaN	3.281970	0.911479	0.121530	0.433496	0.395970	0.984445	0.446589	0.083816	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	RS11_HUMAN	RS11_HUMAN	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	100.000000	0.015800	18413.300000	4.000000	11.000000	12.000000	Spectrum4576 scans:21488,	ILSGVVTK	I[+28]LSGVVTK	R	M	99.000000	61.200000	43.700000	34.400000	Dimethyl (+28), Dimethyl:2H(4) (+32)	875.600000	2.000000	0.000110	0.130000	72.000000	79.000000	3.116133	1.137267	0.395400	2.276050	0.127400	0.273400	NaN	NaN	NaN	3.916216	1.649966	0.687533	2.647724	0.172992	0.408700	NaN	NaN	NaN	3.281970	0.911479	0.121530	0.433496	0.395598	0.572386	0.445729	0.083786	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome subunit alpha type OS=Homo sapiens GN=PSMA6 PE=3 SV=1	G3V5Z7_HUMAN	G3V5Z7_HUMAN	Proteasome subunit alpha type OS=Homo sapiens GN=PSMA6 PE=3 SV=1	100.000000	0.003950	28129.500000	2.000000	2.000000	3.000000	Spectrum19317 scans:12371,	ILTEAEIDAH	I[+28]LTEAEIDAH	R	L	99.700000	76.600000	48.600000	44.400000	Dimethyl (+28)	1138.590000	2.000000	-0.000280	-0.250000	235.000000	244.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Proteasome subunit alpha type OS=Homo sapiens GN=PSMA6 PE=3 SV=1	PSA6_HUMAN	PSA6_HUMAN	Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1	100.000000	0.002880	27381.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.35374.35374.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35374"	ILTEAEIDAHLVALAERD	I[+28]LTEAEIDAHLVALAERD	R	-	99.600000	91.600000	58.200000	89.500000	Dimethyl (+28)	2006.070000	3.000000	0.003900	1.900000	229.000000	246.000000	1.522600	0.608333	0.466133	0.096750	0.469500	0.794950	NaN	NaN	NaN	1.913535	0.882581	0.810526	0.112549	0.637518	1.188355	NaN	NaN	NaN	1.013042	0.760049	0.462599	0.101757	1.000000	0.126061	0.442320	0.083725	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	TKT_HUMAN	TKT_HUMAN	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	100.000000	0.006590	67861.400000	3.000000	5.000000	5.000000	Spectrum63693 scans:37722,	ILTVEDHYYEGGIGEAVSSAVVGEPGITVTH	I[+28]LTVEDHYYEGGIGEAVSSAVVGEPGITVTH	R	L	99.700000	76.500000	56.000000	74.600000	Dimethyl (+28)	3226.620000	3.000000	0.017000	5.100000	556.000000	586.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA replication complex GINS protein SLD5 OS=Homo sapiens GN=GINS4 PE=4 SV=1	E5RFF9_HUMAN	E5RFF9_HUMAN	DNA replication complex GINS protein SLD5 OS=Homo sapiens GN=GINS4 PE=4 SV=1	100.000000	0.006590	22635.100000	2.000000	4.000000	5.000000	Spectrum42555 scans:12979,	ILVEPDTDEQR	I[+28]LVEPDTDEQR	N	-	99.700000	88.700000	49.700000	61.700000	Dimethyl (+28), Label:13C(6) (+6)	1347.690000	2.000000	-0.003600	-2.600000	182.000000	192.000000	5.865533	1.576567	1.153400	NaN	NaN	NaN	NaN	NaN	NaN	7.371539	2.287310	2.005564	NaN	NaN	NaN	NaN	NaN	NaN	7.371539	2.287310	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA replication complex GINS protein SLD5 OS=Homo sapiens GN=GINS4 PE=4 SV=1	E5RFF9_HUMAN	E5RFF9_HUMAN	DNA replication complex GINS protein SLD5 OS=Homo sapiens GN=GINS4 PE=4 SV=1	100.000000	0.006590	22635.100000	2.000000	4.000000	5.000000	Spectrum42556 scans:12980,	ILVEPDTDEQR	I[+28]LVEPDTDEQR	N	-	99.700000	74.800000	49.000000	45.900000	Dimethyl (+28)	1341.680000	2.000000	-0.000042	-0.031000	182.000000	192.000000	5.865533	1.576567	1.153400	NaN	NaN	NaN	NaN	NaN	NaN	7.371539	2.287310	2.005564	NaN	NaN	NaN	NaN	NaN	NaN	7.371539	2.287310	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	GDP-L-fucose synthase OS=Homo sapiens GN=TSTA3 PE=1 SV=1	FCL_HUMAN	FCL_HUMAN	GDP-L-fucose synthase OS=Homo sapiens GN=TSTA3 PE=1 SV=1	100.000000	0.002630	35874.600000	1.000000	2.000000	2.000000	Spectrum47695 scans:18914,	ILVTGGSGLVGK	I[+28]LVTGGSGLVGK	R	A	99.700000	71.100000	46.500000	57.900000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1159.750000	2.000000	-0.001400	-1.200000	10.000000	21.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	GDP-L-fucose synthase OS=Homo sapiens GN=TSTA3 PE=1 SV=1	FCL_HUMAN	FCL_HUMAN	GDP-L-fucose synthase OS=Homo sapiens GN=TSTA3 PE=1 SV=1	100.000000	0.006940	35874.600000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction6A.18935.18935.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18935"	ILVTGGSGLVGK	I[+28]LVTGGSGLVGK	R	A	98.900000	54.300000	52.100000	34.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1163.740000	2.000000	-0.000860	-0.740000	10.000000	21.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	GDP-L-fucose synthase OS=Homo sapiens GN=TSTA3 PE=1 SV=1	FCL_HUMAN	FCL_HUMAN	GDP-L-fucose synthase OS=Homo sapiens GN=TSTA3 PE=1 SV=1	100.000000	0.006940	35874.600000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction6A.18946.18946.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18946"	ILVTGGSGLVGK	I[+28]LVTGGSGLVGK	R	A	99.200000	57.000000	52.500000	37.800000	Dimethyl (+28), Dimethyl (+28)	1155.720000	2.000000	-0.001100	-0.970000	10.000000	21.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3	ATPB_HUMAN	ATPB_HUMAN	ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3	100.000000	0.002330	56542.500000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.42133.42133.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42133"	IMNVIGEPIDER	I[+28]MNVIGEPIDER	R	G	99.300000	56.900000	54.000000	33.300000	Dimethyl (+28)	1412.730000	2.000000	-0.003100	-2.200000	144.000000	155.000000	0.507667	0.152767	0.318200	0.208550	0.352250	10.828200	NaN	NaN	NaN	0.638013	0.221637	0.553295	0.242606	0.478308	16.186860	NaN	NaN	NaN	0.440309	0.349972	0.268673	0.223757	1.000000	0.229851	0.429988	0.083514	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=2 SV=1	B4DXP5_HUMAN	B4DXP5_HUMAN	Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=2 SV=1	99.900000	0.001320	33908.800000	1.000000	1.000000	1.000000	Spectrum17873 scans:9160,	INISEGNCPER	I[+28]NISEGNC[+57]PER	R	I	99.000000	51.300000	46.400000	32.500000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1325.630000	2.000000	-0.001600	-1.200000	47.000000	57.000000	0.657533	0.302567	0.467433	0.772700	12.387400	59.505000	NaN	NaN	2.611500	0.826358	0.438969	0.812786	0.898880	16.820422	88.952837	NaN	NaN	1.251438	0.862619	8.629696	0.026745	0.472072	0.111145	1.000000	0.429190	0.083333	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=2 SV=1	B4DXP5_HUMAN	B4DXP5_HUMAN	Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=2 SV=1	99.900000	0.001320	33908.800000	1.000000	1.000000	1.000000	Spectrum17871 scans:9158,	INISEGNCPER	I[+28]NISEGNC[+57]PER	R	I	99.200000	51.500000	46.200000	28.300000	Dimethyl (+28), Carbamidomethyl (+57)	1315.620000	2.000000	-0.000510	-0.380000	47.000000	57.000000	0.657533	0.302567	0.467433	0.772700	12.387400	59.505000	NaN	NaN	2.611500	0.826358	0.438969	0.812786	0.898880	16.820422	88.952837	NaN	NaN	1.251438	0.862619	8.629696	0.026745	0.472072	0.064048	1.000000	0.428395	0.083303	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	SH3 domain binding glutamic acid-rich protein like 3 OS=Homo sapiens GN=SH3BGRL3 PE=2 SV=1	Q5T123_HUMAN	Q5T123_HUMAN	SH3 domain binding glutamic acid-rich protein like 3 OS=Homo sapiens GN=SH3BGRL3 PE=2 SV=1	100.000000	0.005760	9362.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.28664.28664.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28664"	IQYQLVDISQDNALR	I[+28]QYQLVDISQDNALR	R	D	99.700000	94.800000	57.100000	74.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1812.970000	2.000000	0.004300	2.400000	33.000000	47.000000	0.544900	0.280567	0.515067	4.840450	14.577800	25.571450	NaN	NaN	NaN	0.684806	0.407051	0.895612	5.630886	19.794691	38.226250	NaN	NaN	NaN	3.157846	10.100871	0.422955	0.474101	1.000000	1.000000	0.427603	0.083273	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	SH3 domain binding glutamic acid-rich protein like 3 OS=Homo sapiens GN=SH3BGRL3 PE=2 SV=1	SH3L3_HUMAN	SH3L3_HUMAN	SH3 domain-binding glutamic acid-rich-like protein 3 OS=Homo sapiens GN=SH3BGRL3 PE=1 SV=1	100.000000	0.005760	10419.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.28645.28645.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28645"	IQYQLVDISQDNALR	I[+28]QYQLVDISQDNALR	R	D	99.700000	84.400000	56.800000	69.200000	Dimethyl (+28)	1802.950000	2.000000	-0.001300	-0.720000	33.000000	47.000000	0.544900	0.280567	0.515067	4.840450	14.577800	25.571450	NaN	NaN	NaN	0.684806	0.407051	0.895612	5.630886	19.794691	38.226250	NaN	NaN	NaN	3.157846	10.100871	0.422955	0.474101	1.000000	1.000000	0.426814	0.083213	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Obg-like ATPase 1 OS=Homo sapiens GN=OLA1 PE=1 SV=2	sp|Q9NTK5|OLA1_HUMAN	OLA1_HUMAN	Obg-like ATPase 1 OS=Homo sapiens GN=OLA1 PE=1 SV=2	100.000000	0.007900	44727.400000	4.000000	5.000000	6.000000	Spectrum53332 scans:25366,	ISACDGIFHLTR	I[+28]SAC[+57]DGIFHLTR	H	A	99.700000	59.700000	50.300000	42.000000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1422.740000	3.000000	0.001000	0.720000	114.000000	125.000000	NaN	1.496333	3.975433	NaN	2.477450	NaN	NaN	NaN	NaN	NaN	2.170906	6.912595	NaN	3.364044	NaN	NaN	NaN	NaN	NaN	2.767475	NaN	0.135164	NaN	0.501625	NaN	0.083184	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Beta-adrenergic receptor kinase 1 OS=Homo sapiens GN=ADRBK1 PE=1 SV=2	ARBK1_HUMAN	ARBK1_HUMAN	Beta-adrenergic receptor kinase 1 OS=Homo sapiens GN=ADRBK1 PE=1 SV=2	100.000000	0.003950	79558.300000	2.000000	2.000000	3.000000	Spectrum56210 scans:28645,	ISDLGLACDFSK	I[+28]SDLGLAC[+57]DFSK	R	K	99.700000	108.000000	49.600000	93.700000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36)	1388.710000	2.000000	-0.003700	-2.700000	333.000000	344.000000	7.418967	3.973267	1.442667	0.369100	0.241250	1.585800	NaN	NaN	NaN	9.323824	5.764484	2.508549	0.429373	0.327585	2.370581	NaN	NaN	NaN	4.876599	3.046035	0.470704	0.463861	1.000000	1.000000	0.423687	0.083154	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Beta-adrenergic receptor kinase 1 OS=Homo sapiens GN=ADRBK1 PE=1 SV=2	ARBK1_HUMAN	ARBK1_HUMAN	Beta-adrenergic receptor kinase 1 OS=Homo sapiens GN=ADRBK1 PE=1 SV=2	100.000000	0.004630	79558.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction6A.28652.28652.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28652"	ISDLGLACDFSK	I[+28]SDLGLAC[+57]DFSK	R	K	99.200000	57.100000	52.800000	55.000000	Dimethyl (+28), Carbamidomethyl (+57), Dimethyl (+28)	1380.690000	2.000000	-0.003000	-2.200000	333.000000	344.000000	7.418967	3.973267	1.442667	0.369100	0.241250	1.585800	NaN	NaN	NaN	9.323824	5.764484	2.508549	0.429373	0.327585	2.370581	NaN	NaN	NaN	4.876599	3.046035	0.470704	0.463861	1.000000	1.000000	0.422913	0.083034	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1	EIF3M_HUMAN	EIF3M_HUMAN	Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1	100.000000	0.032600	42485.800000	2.000000	4.000000	13.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.11195.11195.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11195"	ISEEDQAAELR	I[+28]SEEDQAAELR	D	A	99.700000	55.500000	51.400000	39.000000	Dimethyl (+28)	1287.630000	2.000000	0.000250	0.190000	9.000000	19.000000	2.034133	0.072900	0.152367	3.167400	0.205100	0.170850	NaN	NaN	NaN	2.556407	0.105765	0.264939	3.684630	0.278498	0.255400	NaN	NaN	NaN	3.120519	0.192131	0.113855	0.268943	0.324366	0.792217	0.421372	0.083004	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2	H4_HUMAN	H4_HUMAN	Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2	100.000000	0.039500	11349.700000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.15923.15923.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15923"	ISGLIYEETR	I[+28]SGLIYEETR	R	G	99.700000	83.600000	53.900000	56.300000	Dimethyl (+28), Label:13C(6) (+6)	1213.660000	2.000000	-0.000270	-0.220000	47.000000	56.000000	0.373133	1.634767	4.408533	0.012550	0.034900	33.155200	NaN	2.597714	NaN	0.468937	2.371748	7.665681	0.014599	0.047390	49.563047	NaN	1.106342	NaN	0.241768	1.175160	0.480187	0.222381	1.000000	0.238314	0.420606	0.005657	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2	H4_HUMAN	H4_HUMAN	Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2	100.000000	0.039500	11349.700000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.15788.15788.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15788"	ISGLIYEETR	I[+28]SGLIYEETR	R	G	99.700000	90.200000	53.300000	63.200000	Dimethyl (+28)	1207.640000	2.000000	-0.000270	-0.220000	47.000000	56.000000	0.373133	1.634767	4.408533	0.012550	0.034900	33.155200	NaN	2.597714	NaN	0.468937	2.371748	7.665681	0.014599	0.047390	49.563047	NaN	1.106342	NaN	0.241768	1.175160	0.480187	0.222381	1.000000	0.645201	0.419843	0.005651	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum37677 scans:7320,	ISQLEMAR	I[+28]SQLEM[+16]AR	R	Q	99.000000	51.300000	48.200000	28.800000	Dimethyl (+28), Oxidation (+16), Label:13C(6) (+6)	996.540000	2.000000	-0.000550	-0.550000	428.000000	435.000000	1.782100	0.228733	0.225433	0.985650	3.162850	2.846600	NaN	NaN	NaN	2.239663	0.331850	0.391990	1.146605	4.294725	4.255326	NaN	NaN	NaN	1.693134	2.313287	0.198774	0.450906	1.000000	0.582519	0.418324	0.082856	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HSPA4L PE=1 SV=3	HS74L_HUMAN	HS74L_HUMAN	Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HSPA4L PE=1 SV=3	99.900000	0.000000	94496.500000	0.000000	0.000000	0.000000	Nsco_Tails_biological_replicate2_apoptosis.13499.13499.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13499"	ISTTLNADEAVAR	I[+28]STTLNADEAVAR	D	G	99.700000	70.000000	54.300000	53.100000	Dimethyl (+28)	1387.730000	2.000000	-0.000910	-0.650000	362.000000	374.000000	0.459200	0.153200	0.337567	0.637800	0.218850	0.340750	NaN	NaN	NaN	0.577102	0.222265	0.586970	0.741951	0.297169	0.509380	NaN	NaN	NaN	0.659527	0.259717	0.079152	0.091174	1.000000	0.613125	0.417569	0.082737	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HSPA4L PE=1 SV=3	HS74L_HUMAN	HS74L_HUMAN	Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HSPA4L PE=1 SV=3	99.900000	0.000000	94496.500000	0.000000	0.000000	0.000000	Nsco_Tails_biological_replicate2_apoptosis.13502.13502.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13502"	ISTTLNADEAVAR	I[+28]STTLNADEAVAR	D	G	99.700000	87.600000	54.500000	61.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1397.740000	2.000000	-0.000340	-0.240000	362.000000	374.000000	0.459200	0.153200	0.337567	0.637800	0.218850	0.340750	NaN	NaN	NaN	0.577102	0.222265	0.586970	0.741951	0.297169	0.509380	NaN	NaN	NaN	0.659527	0.259717	0.079152	0.091174	0.423199	1.000000	0.415320	0.082708	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Aspartate aminotransferase, mitochondrial OS=Homo sapiens GN=GOT2 PE=1 SV=3	AATM_HUMAN	AATM_HUMAN	Aspartate aminotransferase, mitochondrial OS=Homo sapiens GN=GOT2 PE=1 SV=3	100.000000	0.005760	47500.600000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.25504.25504.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25504"	ISVAGVTSSNVGYLAH	I[+28]SVAGVTSSNVGYLAH	R	A	99.100000	57.800000	55.400000	51.500000	Dimethyl (+28)	1601.840000	2.000000	-0.005400	-3.300000	408.000000	423.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine phosphatase OS=Homo sapiens GN=PSPH PE=1 SV=2	SERB_HUMAN	SERB_HUMAN	Phosphoserine phosphatase OS=Homo sapiens GN=PSPH PE=1 SV=2	100.000000	0.003950	24990.100000	2.000000	3.000000	3.000000	Spectrum74163 scans:54922,	ITDFVELLGELEE	I[+28]TDFVELLGELEE	Y	-	99.400000	65.200000	50.300000	50.700000	Dimethyl (+28)	1533.780000	2.000000	-0.003100	-2.000000	213.000000	225.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.021100	69396.600000	5.000000	15.000000	16.000000	Spectrum33304 scans:2360,	ITEAEKNER	I[+28]TEAEKNER	R	V	99.100000	53.800000	49.400000	26.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1162.630000	2.000000	-0.000130	-0.110000	518.000000	526.000000	4.001967	43.289967	8.697833	0.433800	2.570850	11.044650	NaN	NaN	NaN	5.029492	62.805832	15.124036	0.504639	3.490868	16.510427	NaN	NaN	NaN	2.767065	33.148350	0.436337	0.286184	1.000000	0.911063	0.410894	0.082531	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.021100	69396.600000	5.000000	15.000000	16.000000	Spectrum33286 scans:2340,	ITEAEKNER	I[+28]TEAEKNER	R	V	99.400000	36.700000	49.500000	11.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1154.650000	3.000000	-0.000770	-0.670000	518.000000	526.000000	4.001967	43.289967	8.697833	0.433800	2.570850	11.044650	NaN	NaN	NaN	5.029492	62.805832	15.124036	0.504639	3.490868	16.510427	NaN	NaN	NaN	2.767065	33.148350	0.436337	0.286184	0.901244	0.910228	0.410165	0.082501	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC	sp|Q00610|CLH1_HUMAN	CLH1_HUMAN	Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5	100.000000	0.011900	191600.900000	7.000000	9.000000	9.000000	Spectrum11312 scans:40222,	ITNVLQNPDLALR	I[+28]TNVLQNPDLALR	Y	M	98.900000	33.900000	51.400000	15.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1503.870000	3.000000	0.000170	0.120000	338.000000	350.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.162000	15036.300000	9.000000	26.000000	123.000000	Spectrum55297 scans:27586,	ITPAEVGVLVGKDR	I[+28]TPAEVGVLVGKDR	N	S	99.700000	58.100000	49.200000	42.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1518.940000	3.000000	0.001200	0.770000	43.000000	56.000000	18.799400	5.647500	0.303600	0.391650	NaN	NaN	NaN	NaN	NaN	23.626241	8.193491	0.527908	0.455606	NaN	NaN	NaN	NaN	NaN	12.040923	8.193491	0.471015	NaN	0.575299	NaN	0.408716	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.162000	15036.300000	9.000000	26.000000	123.000000	Spectrum55460 scans:27776,	ITPAEVGVLVGKDR	I[+28]TPAEVGVLVGKDR	N	S	99.700000	84.500000	50.400000	68.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1526.920000	3.000000	0.001500	0.970000	43.000000	56.000000	18.799400	5.647500	0.303600	0.391650	NaN	NaN	NaN	NaN	NaN	23.626241	8.193491	0.527908	0.455606	NaN	NaN	NaN	NaN	NaN	12.040923	8.193491	0.471015	NaN	0.571477	NaN	0.407995	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.015800	72316.700000	7.000000	10.000000	12.000000	Spectrum53833 scans:25919,	ITPSYVAFTPEGER	I[+28]TPSYVAFTPEGER	R	L	99.700000	86.800000	50.900000	76.900000	Dimethyl (+28), Label:13C(6) (+6)	1599.820000	2.000000	-0.002400	-1.500000	61.000000	74.000000	0.489200	0.439467	0.898800	0.849050	0.202500	NaN	NaN	NaN	NaN	0.614805	0.637586	1.562859	0.987698	0.274968	NaN	NaN	NaN	NaN	0.801251	0.456277	0.145548	0.240791	1.000000	0.763055	0.405848	0.082384	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.004670	72316.700000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.44132.44132.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44132"	ITPSYVAFTPEGER	I[+28]TPSYVAFTPEGER	R	L	99.300000	61.000000	54.200000	50.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1603.810000	2.000000	-0.006800	-4.200000	61.000000	74.000000	0.489200	0.439467	0.898800	0.849050	0.202500	NaN	NaN	NaN	NaN	0.614805	0.637586	1.562859	0.987698	0.274968	NaN	NaN	NaN	NaN	0.801251	0.456277	0.145548	0.240791	1.000000	0.762359	0.405137	0.082354	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	MARE1_HUMAN	MARE1_HUMAN	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	100.000000	0.030300	29981.500000	5.000000	15.000000	23.000000	Spectrum72473 scans:48750,	IVDILYATDEGFVIPDEGGPQEEQEEY	I[+28]VDILYATDEGFVIPDEGGPQEEQEEY	R	-	99.700000	49.500000	49.300000	41.400000	Dimethyl (+28)	3082.420000	3.000000	-0.002100	-0.690000	242.000000	268.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Phosphoglucomutase-2 OS=Homo sapiens GN=PGM2 PE=1 SV=4	PGM2_HUMAN	PGM2_HUMAN	Phosphoglucomutase-2 OS=Homo sapiens GN=PGM2 PE=1 SV=4	100.000000	0.008640	68267.700000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.12018.12018.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12018"	IVLANDPDADR	I[+28]VLANDPDADR	R	L	99.700000	68.600000	52.500000	52.500000	Dimethyl (+28)	1225.630000	2.000000	-0.000970	-0.790000	317.000000	327.000000	0.628800	2.619033	3.773400	1.111550	7.797150	43.785800	NaN	NaN	NaN	0.790248	3.799739	6.561294	1.293064	10.587480	65.454518	NaN	NaN	NaN	1.041656	7.193610	0.150768	0.268828	0.488026	0.501793	0.403723	0.082296	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Amidophosphoribosyltransferase OS=Homo sapiens GN=PPAT PE=1 SV=1	PUR1_HUMAN	PUR1_HUMAN	Amidophosphoribosyltransferase OS=Homo sapiens GN=PPAT PE=1 SV=1	100.000000	0.003950	57381.300000	2.000000	3.000000	3.000000	Spectrum53664 scans:25731,	IVLVDDSIVR	I[+28]VLVDDSIVR	R	G	99.600000	64.900000	48.700000	41.200000	Dimethyl (+28), Label:13C(6) (+6)	1161.710000	2.000000	0.000049	0.042000	385.000000	394.000000	1.680500	0.747533	0.474267	0.378050	0.395000	45.611800	NaN	NaN	NaN	2.111977	1.084534	0.824668	0.439785	0.536357	68.184169	NaN	NaN	NaN	1.275881	0.810446	0.369302	0.207614	0.699115	0.759938	0.403020	0.082062	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.015800	72316.700000	7.000000	10.000000	12.000000	Spectrum18500 scans:10595,	IVLVGGSTR	I[+28]VLVGGSTR	E	I	99.200000	52.000000	46.900000	0.000000	Dimethyl (+28), Label:13C(6) (+6)	934.590000	2.000000	-0.000610	-0.650000	359.000000	367.000000	0.595100	0.271567	0.457067	0.623250	0.408300	0.655150	2.498543	0.643357	0.812814	0.747895	0.393994	0.794760	0.725025	0.554416	0.979371	1.671098	0.274000	0.389503	1.048006	0.407470	0.078184	0.037518	0.147927	0.137185	0.027431	0.005593	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.015800	72316.700000	7.000000	10.000000	12.000000	Spectrum21989 scans:8551,	IVLVGGSTR	I[+28]VLVGGSTR	E	I	99.600000	60.000000	47.600000	0.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	938.580000	2.000000	-0.000650	-0.690000	359.000000	367.000000	0.595100	0.271567	0.457067	0.623250	0.408300	0.655150	2.498543	0.643357	0.812814	0.747895	0.393994	0.794760	0.725025	0.554416	0.979371	1.671098	0.274000	0.389503	1.048006	0.407470	0.078184	0.037518	0.091748	0.137041	0.027383	0.005591	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Cytoplasmic of Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH	sp|P07954-2|FUMH_HUMAN	FUMH_HUMAN	Isoform Cytoplasmic of Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH	100.000000	0.002630	50195.300000	1.000000	2.000000	2.000000	Spectrum52463 scans:24406,	IYELAAGGTAVGTGLNTR	I[+28]YELAAGGTAVGTGLNTR	R	I	99.700000	68.700000	52.800000	59.300000	Dimethyl (+28), Label:13C(6) (+6)	1796.970000	3.000000	0.000580	0.320000	226.000000	243.000000	0.373433	0.172967	0.482667	46.498050	2.997650	0.083300	NaN	NaN	NaN	0.469314	0.250943	0.839274	54.091086	4.070405	0.124524	NaN	NaN	NaN	27.280200	2.160674	0.470144	0.460802	1.000000	1.000000	0.400924	0.081946	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform Cytoplasmic of Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH	sp|P07954-2|FUMH_HUMAN	FUMH_HUMAN	Isoform Cytoplasmic of Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH	99.900000	0.002330	50195.300000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.41795.41795.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41795"	IYELAAGGTAVGTGLNTR	I[+28]YELAAGGTAVGTGLNTR	R	I	99.700000	75.100000	56.800000	40.800000	Dimethyl (+28)	1790.950000	2.000000	-0.007400	-4.100000	226.000000	243.000000	0.373433	0.172967	0.482667	46.498050	2.997650	0.083300	NaN	NaN	NaN	0.469314	0.250943	0.839274	54.091086	4.070405	0.124524	NaN	NaN	NaN	27.280200	2.160674	0.470144	0.460802	1.000000	1.000000	0.400231	0.081917	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	EFHD2_HUMAN	EFHD2_HUMAN	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	100.000000	0.014500	26680.400000	5.000000	8.000000	11.000000	Spectrum50023 scans:21583,	KAAAGELQEDSGLCVLAR	K[+28]AAAGELQEDSGLC[+57]VLAR	R	L	99.700000	50.300000	53.600000	36.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Carbamidomethyl (+57), Label:13C(6) (+6)	1953.060000	3.000000	-0.000240	-0.120000	159.000000	176.000000	42.354333	9.283000	0.526567	NaN	704.405900	NaN	NaN	NaN	NaN	53.229023	13.467937	0.915609	NaN	956.488424	NaN	NaN	NaN	NaN	53.229023	484.978181	NaN	0.000000	NaN	0.000000	1.000000	0.081888	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	EFHD2_HUMAN	EFHD2_HUMAN	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	100.000000	0.014500	26680.400000	5.000000	8.000000	11.000000	Spectrum50034 scans:21595,	KAAAGELQEDSGLCVLAR	K[+28]AAAGELQEDSGLC[+57]VLAR	R	L	99.700000	67.700000	53.400000	54.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1961.040000	3.000000	0.002600	1.400000	159.000000	176.000000	42.354333	9.283000	0.526567	NaN	704.405900	NaN	NaN	NaN	NaN	53.229023	13.467937	0.915609	NaN	956.488424	NaN	NaN	NaN	NaN	53.229023	484.978181	NaN	0.000000	NaN	0.000000	1.000000	0.081628	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S7 OS=Homo sapiens GN=RPS7 PE=1 SV=1	RS7_HUMAN	RS7_HUMAN	40S ribosomal protein S7 OS=Homo sapiens GN=RPS7 PE=1 SV=1	100.000000	0.002630	22109.500000	2.000000	2.000000	2.000000	Spectrum61858 scans:35605,	KAIIIFVPVPQ	K[+28]AIIIFVPVPQ	R	L	99.000000	51.400000	46.000000	37.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1287.840000	2.000000	0.000001	0.000440	58.000000	68.000000	NaN	NaN	0.206600	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.359242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.025900	28786.800000	5.000000	8.000000	9.000000	Nsco_Tails_biological_replicate1_apoptosis.2242.2242.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2242"	KAMEAVAAQGK	K[+28]AMEAVAAQGK	R	A	99.700000	64.500000	53.800000	55.300000	Dimethyl (+28), Dimethyl (+28), Oxidation (+16), Dimethyl (+28)	1202.670000	2.000000	0.000036	0.030000	241.000000	251.000000	5.276533	2.902300	1.331133	NaN	NaN	NaN	NaN	NaN	NaN	6.631310	4.210707	2.314612	NaN	NaN	NaN	NaN	NaN	NaN	6.631310	4.210707	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.032900	28786.800000	10.000000	21.000000	25.000000	Spectrum34613 scans:3827,	KAMEAVAAQGK	K[+28]AMEAVAAQGK	R	A	99.300000	55.900000	49.300000	43.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Oxidation (+16), Dimethyl:2H(4) (+32)	1210.720000	2.000000	-0.000630	-0.520000	241.000000	251.000000	5.276533	2.902300	1.331133	NaN	NaN	NaN	NaN	NaN	NaN	6.631310	4.210707	2.314612	NaN	NaN	NaN	NaN	NaN	NaN	6.631310	4.210707	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.032900	28786.800000	10.000000	21.000000	25.000000	Spectrum34632 scans:3848,	KAMEAVAAQGK	K[+28]AMEAVAAQGK	R	A	99.500000	60.700000	50.000000	55.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36)	1218.700000	2.000000	-0.000052	-0.043000	241.000000	251.000000	5.276533	2.902300	1.331133	NaN	NaN	NaN	NaN	NaN	NaN	6.631310	4.210707	2.314612	NaN	NaN	NaN	NaN	NaN	NaN	6.631310	4.210707	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1	DDX47_HUMAN	DDX47_HUMAN	Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1	100.000000	0.003950	50630.400000	2.000000	3.000000	3.000000	Spectrum11164 scans:39842,	KARSILLATDVASR	K[+42]ARSILLATDVASR	A	G	98.500000	38.200000	50.900000	29.300000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10), Label:13C(6)15N(4) (+10)	1597.950000	3.000000	0.003200	2.000000	312.000000	325.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1	DDX47_HUMAN	DDX47_HUMAN	Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1	100.000000	0.003950	50630.400000	2.000000	3.000000	3.000000	Spectrum11158 scans:39830,	KARSILLATDVASR	NaN	A	G	99.700000	47.600000	49.900000	0.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6) (+6), Label:13C(6) (+6)	1589.970000	3.000000	0.000079	0.050000	312.000000	325.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone H1.5 OS=Homo sapiens GN=HIST1H1B PE=1 SV=3	H15_HUMAN	H15_HUMAN	Histone H1.5 OS=Homo sapiens GN=HIST1H1B PE=1 SV=3	100.000000	0.006590	22563.700000	4.000000	5.000000	5.000000	Spectrum19647 scans:13354,	KATGPPVSELITK	K[+28]ATGPPVSELITK	R	A	99.500000	36.600000	49.000000	17.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1439.890000	3.000000	-0.000810	-0.560000	37.000000	49.000000	1.460267	9.721167	5.200800	2.112300	NaN	NaN	NaN	NaN	NaN	1.835198	14.103637	9.043297	2.457234	NaN	NaN	NaN	NaN	NaN	2.146216	14.103637	0.091618	NaN	0.270335	NaN	0.390107	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone H1.5 OS=Homo sapiens GN=HIST1H1B PE=1 SV=3	H15_HUMAN	H15_HUMAN	Histone H1.5 OS=Homo sapiens GN=HIST1H1B PE=1 SV=3	100.000000	0.006590	22563.700000	4.000000	5.000000	5.000000	Spectrum11478 scans:40932,	KATGPPVSELITKAVAA	K[+28]ATGPPVSELITKAVAA	R	S	99.700000	46.300000	50.200000	36.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1752.070000	3.000000	0.000210	0.120000	37.000000	53.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.031600	50123.200000	9.000000	17.000000	24.000000	Spectrum70905 scans:46289,	KDGNASGTTLLEALDCILPPTR	K[+28]DGNASGTTLLEALDC[+57]ILPPTR	R	P	99.700000	55.600000	55.300000	39.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Carbamidomethyl (+57), Label:13C(6) (+6)	2407.300000	3.000000	-0.007100	-2.900000	219.000000	240.000000	1.106800	0.055500	0.067100	NaN	NaN	NaN	NaN	NaN	NaN	1.390976	0.080520	0.116675	NaN	NaN	NaN	NaN	NaN	NaN	1.390976	0.080520	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.031600	50123.200000	9.000000	17.000000	24.000000	Spectrum70823 scans:46170,	KDGNASGTTLLEALDCILPPTR	K[+28]DGNASGTTLLEALDC[+57]ILPPTR	R	P	99.700000	74.100000	55.100000	51.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2415.280000	3.000000	-0.003800	-1.600000	219.000000	240.000000	1.106800	0.055500	0.067100	NaN	NaN	NaN	NaN	NaN	NaN	1.390976	0.080520	0.116675	NaN	NaN	NaN	NaN	NaN	NaN	1.390976	0.080520	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.031600	50123.200000	9.000000	17.000000	24.000000	Spectrum66889 scans:41315,	KDGNASGTTLLEALDCILPPTRPTDKPLR	K[+28]DGNASGTTLLEALDC[+57]ILPPTRPTDKPLR	R	L	98.900000	35.300000	57.700000	33.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	3268.780000	5.000000	-0.017000	-5.100000	219.000000	247.000000	15.484467	5.726367	0.437267	1.191100	0.363600	0.099750	NaN	NaN	NaN	19.460182	8.307912	0.760332	1.385604	0.493720	0.149114	NaN	NaN	NaN	10.422893	4.400816	0.412348	0.462212	0.425088	0.995577	0.387493	0.081056	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.031600	50123.200000	9.000000	17.000000	24.000000	Spectrum66888 scans:41314,	KDGNASGTTLLEALDCILPPTRPTDKPLR	K[+28]DGNASGTTLLEALDC[+57]ILPPTRPTDKPLR	R	L	99.600000	37.800000	56.800000	35.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Carbamidomethyl (+57), Label:13C(6) (+6), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	3252.840000	5.000000	-0.003600	-1.100000	219.000000	247.000000	15.484467	5.726367	0.437267	1.191100	0.363600	0.099750	NaN	NaN	NaN	19.460182	8.307912	0.760332	1.385604	0.493720	0.149114	NaN	NaN	NaN	10.422893	4.400816	0.412348	0.462212	0.424962	1.000000	0.386199	0.081027	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum33666 scans:2767,	KDSETGENIR	K[+28]DSETGENIR	R	Q	99.700000	56.000000	49.700000	30.100000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1213.660000	3.000000	0.000330	0.270000	625.000000	634.000000	2.640000	3.658700	1.495300	0.036100	2.829350	1.511250	NaN	NaN	NaN	3.317833	5.308105	2.600070	0.041995	3.841877	2.259137	NaN	NaN	NaN	1.679914	4.574991	0.491942	0.101154	0.541059	0.220758	0.385556	0.080942	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	sp|P32119|PRDX2_HUMAN	PRDX2_HUMAN	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	100.000000	0.013200	21874.400000	3.000000	6.000000	10.000000	Spectrum67982 scans:42590,	KEGGLGPLNIPLLADVTR	K[+28]EGGLGPLNIPLLADVTR	R	R	99.700000	54.900000	52.100000	38.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1936.150000	3.000000	-0.000370	-0.190000	92.000000	109.000000	31.655733	17.798700	0.530833	0.077750	NaN	NaN	NaN	NaN	NaN	39.783503	25.822662	0.923028	0.090446	NaN	NaN	NaN	NaN	NaN	19.936975	25.822662	0.494242	NaN	1.000000	NaN	0.384914	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	sp|P32119|PRDX2_HUMAN	PRDX2_HUMAN	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	100.000000	0.013200	21874.400000	3.000000	6.000000	10.000000	Spectrum67892 scans:42481,	KEGGLGPLNIPLLADVTR	K[+28]EGGLGPLNIPLLADVTR	R	R	99.700000	59.500000	51.100000	47.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1928.170000	3.000000	-0.002200	-1.100000	92.000000	109.000000	31.655733	17.798700	0.530833	0.077750	NaN	NaN	NaN	NaN	NaN	39.783503	25.822662	0.923028	0.090446	NaN	NaN	NaN	NaN	NaN	19.936975	25.822662	0.494242	NaN	1.000000	NaN	0.384275	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	NUDT5_HUMAN	NUDT5_HUMAN	ADP-sugar pyrophosphatase OS=Homo sapiens GN=NUDT5 PE=1 SV=1	100.000000	0.025000	24309.800000	5.000000	12.000000	19.000000	Spectrum51779 scans:23608,	KEQTADGVAVIPVLQR	K[+28]EQTADGVAVIPVLQR	R	T	99.700000	50.300000	51.400000	24.700000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1789.070000	3.000000	0.000590	0.330000	55.000000	70.000000	11.683633	4.510433	0.367267	31.168000	NaN	NaN	NaN	NaN	NaN	14.683465	6.543815	0.638614	36.257670	NaN	NaN	NaN	NaN	NaN	25.470568	6.543815	0.000000	NaN	0.000000	NaN	0.381738	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum50300 scans:21899,	KESPLLFKFR	K[+28]ESPLLFKFR	R	A	98.900000	28.100000	45.800000	22.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1361.900000	3.000000	-0.000240	-0.180000	72.000000	81.000000	1.250233	NaN	0.259033	0.435350	NaN	2.330400	NaN	NaN	NaN	1.571237	NaN	0.450414	0.506442	NaN	3.483668	NaN	NaN	NaN	1.038839	NaN	0.301498	NaN	1.000000	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.054000	37523.700000	7.000000	15.000000	41.000000	Spectrum41557 scans:11859,	KFAADAVKLER	K[+28]FAADAVKLER	R	M	99.700000	41.900000	49.000000	33.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1356.830000	3.000000	0.000250	0.180000	314.000000	324.000000	5.643100	3.009867	0.587800	2.571050	3.876150	0.863750	NaN	NaN	NaN	7.091994	4.366767	1.022083	2.990897	5.263290	1.291203	NaN	NaN	NaN	5.041446	4.815028	0.245927	0.059097	0.922560	0.063645	0.380482	0.080716	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.054000	37523.700000	7.000000	15.000000	41.000000	Spectrum41556 scans:11858,	KFAADAVKLER	K[+28]FAADAVKLER	R	M	99.700000	36.600000	46.800000	20.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1344.870000	4.000000	-0.000099	-0.073000	314.000000	324.000000	5.643100	3.009867	0.587800	2.571050	3.876150	0.863750	NaN	NaN	NaN	7.091994	4.366767	1.022083	2.990897	5.263290	1.291203	NaN	NaN	NaN	5.041446	4.815028	0.245927	0.059097	0.921563	0.063626	0.379858	0.080660	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV=2	FAAA_HUMAN	FAAA_HUMAN	Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV=2	100.000000	0.002310	46357.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.40139.40139.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40139"	KFLLDGDEVIITGY	K[+28]FLLDGDEVIITGY	R	C	98.800000	58.100000	56.700000	47.700000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1641.910000	2.000000	-0.002400	-1.500000	382.000000	395.000000	0.751800	1.238700	4.325550	2.427800	0.380950	0.133750	NaN	NaN	NaN	0.944828	1.797127	7.521388	2.824255	0.517279	0.199940	NaN	NaN	NaN	1.884542	1.157203	0.294476	0.321581	0.769451	1.000000	0.379235	0.080604	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	10 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPE1 PE=1 SV=2	CH10_HUMAN	CH10_HUMAN	10 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPE1 PE=1 SV=2	100.000000	0.003950	10913.700000	1.000000	1.000000	3.000000	Spectrum55145 scans:27411,	KFLPLFDR	K[+28]FLPLFDR	R	V	99.000000	35.700000	47.000000	23.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1100.700000	3.000000	-0.000460	-0.420000	8.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4	TCPD_HUMAN	TCPD_HUMAN	T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4	100.000000	0.008640	57907.900000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.46912.46912.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46912"	KGGISNILEELVVQPL	K[+28]GGISNILEELVVQPL	R	L	99.600000	65.200000	56.900000	48.300000	Dimethyl (+28), Dimethyl (+28)	1764.040000	2.000000	-0.000910	-0.520000	497.000000	512.000000	17.644500	6.618300	0.387700	NaN	NaN	NaN	NaN	NaN	NaN	22.174815	9.601944	0.674144	NaN	NaN	NaN	NaN	NaN	NaN	22.174815	9.601944	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum68679 scans:43421,	KGLKEGIPALDNFLDKL	K[+28]GLKEGIPALDNFLDKL	R	-	99.100000	34.400000	50.900000	31.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	2006.220000	3.000000	-0.000150	-0.075000	842.000000	858.000000	2.007400	0.837600	0.417200	0.202450	0.045400	0.209750	NaN	NaN	NaN	2.522810	1.215205	0.725439	0.235510	0.061647	0.313551	NaN	NaN	NaN	1.379160	0.638426	0.440742	0.467732	1.000000	0.693306	0.374932	0.080520	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum68594 scans:43325,	KGLKEGIPALDNFLDKL	K[+28]GLKEGIPALDNFLDKL	R	-	99.300000	34.500000	49.000000	30.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1994.260000	3.000000	-0.000660	-0.330000	842.000000	858.000000	2.007400	0.837600	0.417200	0.202450	0.045400	0.209750	NaN	NaN	NaN	2.522810	1.215205	0.725439	0.235510	0.061647	0.313551	NaN	NaN	NaN	1.379160	0.638426	0.440742	0.467732	1.000000	0.478770	0.374326	0.080492	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1	CALR_HUMAN	CALR_HUMAN	Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1	100.000000	0.007900	48124.900000	3.000000	5.000000	6.000000	Spectrum23790 scans:2269,	KGLQTSQDAR	K[+28]GLQTSQDAR	D	F	99.700000	40.600000	49.500000	18.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1168.680000	3.000000	0.000590	0.500000	64.000000	73.000000	1.011600	0.709667	0.552933	54.534600	52.225700	0.810850	NaN	NaN	NaN	1.271333	1.029597	0.961456	63.439988	70.915473	1.212123	NaN	NaN	NaN	32.355661	35.972535	0.419496	0.434684	0.957666	1.000000	0.371322	0.080464	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1	CALR_HUMAN	CALR_HUMAN	Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1	100.000000	0.007900	48124.900000	3.000000	5.000000	6.000000	Spectrum23793 scans:2274,	KGLQTSQDAR	K[+28]GLQTSQDAR	D	F	99.700000	43.900000	49.900000	26.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1176.660000	3.000000	0.000540	0.450000	64.000000	73.000000	1.011600	0.709667	0.552933	54.534600	52.225700	0.810850	NaN	NaN	NaN	1.271333	1.029597	0.961456	63.439988	70.915473	1.212123	NaN	NaN	NaN	32.355661	35.972535	0.419496	0.434684	0.930724	1.000000	0.368953	0.080436	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.031600	50123.200000	9.000000	17.000000	24.000000	Spectrum5799 scans:24618,	KIGGIGTVPVGR	NaN	Y	V	99.500000	34.800000	47.100000	10.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1226.780000	3.000000	0.001200	0.970000	255.000000	266.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.031600	50123.200000	9.000000	17.000000	24.000000	Spectrum18651 scans:10952,	KIGGIGTVPVGR	NaN	Y	V	99.500000	32.800000	45.400000	13.100000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1218.810000	3.000000	-0.000640	-0.530000	255.000000	266.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1 OS=Homo sapiens GN=OGFOD1 PE=1 SV=1	sp|Q8N543|OGFD1_HUMAN	OGFD1_HUMAN	2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1 OS=Homo sapiens GN=OGFOD1 PE=1 SV=1	100.000000	0.002630	63230.100000	2.000000	2.000000	2.000000	Spectrum52656 scans:24621,	KILFEDFR	NaN	R	S	99.000000	34.200000	48.800000	14.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1132.690000	3.000000	-0.000990	-0.880000	117.000000	124.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum53551 scans:25607,	KIWCFGPDGTGPN	K[+28]IWC[+57]FGPDGTGPN	R	I	99.200000	55.200000	48.200000	47.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57)	1511.730000	2.000000	-0.002100	-1.400000	648.000000	660.000000	3.476533	1.993667	0.571800	60.147450	43.635900	0.709500	NaN	NaN	NaN	4.369151	2.892446	0.994262	69.969405	59.251680	1.060617	NaN	NaN	NaN	37.169278	31.072063	0.237764	0.320753	0.766055	0.761295	0.362591	0.080296	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.083300	95322.100000	11.000000	24.000000	36.000000	Nsco_Tails_biological_replicate_3_fraction6A.25653.25653.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25653"	KIWCFGPDGTGPN	K[+28]IWC[+57]FGPDGTGPN	R	I	99.000000	55.200000	52.700000	47.300000	Dimethyl (+28), Dimethyl:2H(4) (+32), Carbamidomethyl (+57)	1507.740000	2.000000	-0.002400	-1.600000	648.000000	660.000000	3.476533	1.993667	0.571800	60.147450	43.635900	0.709500	NaN	NaN	NaN	4.369151	2.892446	0.994262	69.969405	59.251680	1.060617	NaN	NaN	NaN	37.169278	31.072063	0.237764	0.320753	0.765344	1.000000	0.362024	0.080268	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.083300	95322.100000	11.000000	24.000000	36.000000	Nsco_Tails_biological_replicate_3_fraction6A.25598.25598.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25598"	KIWCFGPDGTGPN	K[+28]IWC[+57]FGPDGTGPN	R	I	99.200000	55.300000	51.200000	47.200000	Dimethyl (+28), Dimethyl (+28), Carbamidomethyl (+57)	1503.720000	2.000000	-0.002000	-1.300000	648.000000	660.000000	3.476533	1.993667	0.571800	60.147450	43.635900	0.709500	NaN	NaN	NaN	4.369151	2.892446	0.994262	69.969405	59.251680	1.060617	NaN	NaN	NaN	37.169278	31.072063	0.237764	0.320753	0.276303	1.000000	0.358101	0.080185	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum33164 scans:2203,	KKVTAQDVR	K[+28]KVTAQDVR	N	K	99.400000	33.000000	46.900000	7.780000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1153.740000	3.000000	-0.000620	-0.540000	63.000000	71.000000	6.852000	NaN	NaN	1.224400	0.847300	0.445950	NaN	NaN	NaN	8.611286	NaN	NaN	1.424342	1.150519	0.666642	NaN	NaN	NaN	5.017814	1.150519	0.395645	NaN	0.459621	NaN	0.357548	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum33163 scans:2202,	KKVTAQDVR	K[+28]KVTAQDVR	N	K	99.700000	34.500000	44.000000	13.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1141.770000	3.000000	0.000047	0.041000	63.000000	71.000000	6.852000	NaN	NaN	1.224400	0.847300	0.445950	NaN	NaN	NaN	8.611286	NaN	NaN	1.424342	1.150519	0.666642	NaN	NaN	NaN	5.017814	1.150519	0.395645	NaN	0.459468	NaN	0.356446	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	EF1G_HUMAN	EF1G_HUMAN	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	100.000000	0.065800	50101.400000	3.000000	5.000000	5.000000	Nsco_Tails_biological_replicate_3_fraction2A.10960.10960.3 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10960"	KLDPGSEETQTLVR	K[+28]LDPGSEETQTLVR	R	E	98.700000	68.800000	56.700000	53.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1637.930000	3.000000	0.002000	1.200000	401.000000	414.000000	9.787100	4.491700	0.466633	9.105100	NaN	11.178750	NaN	45.814143	NaN	12.299987	6.516636	0.811395	10.591944	NaN	16.710890	NaN	19.511808	NaN	11.445966	13.014222	0.000000	0.132324	0.000000	0.395491	0.355897	0.080046	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	EF1G_HUMAN	EF1G_HUMAN	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	100.000000	0.017100	50101.400000	6.000000	11.000000	13.000000	Spectrum18666 scans:10980,	KLDPGSEETQTLVR	K[+28]LDPGSEETQTLVR	R	E	99.600000	66.400000	52.200000	55.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1645.900000	2.000000	-0.001700	-1.000000	401.000000	414.000000	9.787100	4.491700	0.466633	9.105100	NaN	11.178750	NaN	45.814143	NaN	12.299987	6.516636	0.811395	10.591944	NaN	16.710890	NaN	19.511808	NaN	11.445966	13.014222	0.000000	0.132324	0.000000	0.395151	0.355351	0.080018	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1 PE=1 SV=2	APEX1_HUMAN	APEX1_HUMAN	DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1 PE=1 SV=2	100.000000	0.005760	35537.700000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.26227.26227.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26227"	KPLVLCGDLNVAHEEIDLR	K[+28]PLVLC[+57]GDLNVAHEEIDLR	R	N	99.200000	78.700000	59.500000	78.600000	Dimethyl (+28), Dimethyl (+28), Carbamidomethyl (+57)	2246.210000	3.000000	-0.001600	-0.730000	203.000000	221.000000	1.993533	0.978633	0.592200	0.174500	1.885000	5.633050	NaN	NaN	NaN	2.505383	1.419818	1.029734	0.202995	2.559576	8.420734	NaN	NaN	NaN	1.354189	1.989697	0.448531	0.177583	1.000000	0.747833	0.352106	0.079991	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2	H31_HUMAN	H31_HUMAN	Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2	100.000000	0.010500	15386.700000	3.000000	6.000000	8.000000	Spectrum13675 scans:1763,	KQLATKAAR	NaN	R	K	99.100000	25.800000	40.700000	8.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1083.770000	3.000000	-0.000800	-0.740000	19.000000	27.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2	H31_HUMAN	H31_HUMAN	Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2	100.000000	0.010500	15386.700000	3.000000	6.000000	8.000000	Spectrum14557 scans:3214,	KQLATKAAR	NaN	R	K	99.700000	34.000000	43.300000	13.500000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1097.750000	3.000000	-0.000250	-0.230000	19.000000	27.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	DDB1_HUMAN	DDB1_HUMAN	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	100.000000	0.017300	126952.200000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.47823.47823.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47823"	KTEPATGFIDGDLIESFLDISR	K[+28]TEPATGFIDGDLIESFLDISR	R	P	99.100000	79.200000	59.600000	70.100000	Dimethyl (+28), Dimethyl (+28)	2479.290000	3.000000	0.000400	0.160000	1081.000000	1102.000000	15.411000	6.486800	0.420900	NaN	NaN	NaN	NaN	NaN	NaN	19.367852	9.411162	0.731873	NaN	NaN	NaN	NaN	NaN	NaN	19.367852	9.411162	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	DDB1_HUMAN	DDB1_HUMAN	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	100.000000	0.017300	126952.200000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.47847.47847.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47847"	KTEPATGFIDGDLIESFLDISR	K[+28]TEPATGFIDGDLIESFLDISR	R	P	99.600000	88.600000	60.000000	80.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2497.310000	3.000000	0.001500	0.600000	1081.000000	1102.000000	15.411000	6.486800	0.420900	NaN	NaN	NaN	NaN	NaN	NaN	19.367852	9.411162	0.731873	NaN	NaN	NaN	NaN	NaN	NaN	19.367852	9.411162	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Adenosylhomocysteinase OS=Homo sapiens GN=AHCY PE=1 SV=4	SAHH_HUMAN	SAHH_HUMAN	Adenosylhomocysteinase OS=Homo sapiens GN=AHCY PE=1 SV=4	100.000000	0.003950	47699.100000	2.000000	2.000000	3.000000	Spectrum52441 scans:24382,	KVADIGLAAWGR	K[+28]VADIGLAAWGR	Y	K	98.900000	31.500000	49.000000	18.700000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1321.810000	3.000000	0.000280	0.210000	8.000000	19.000000	1.269833	0.651900	0.543200	NaN	0.233100	0.561300	NaN	NaN	NaN	1.595869	0.945788	0.944531	NaN	0.316518	0.839076	NaN	NaN	NaN	1.595869	0.631153	NaN	0.294407	NaN	1.000000	1.000000	0.079798	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nuclear distribution protein nudE homolog 1 (Fragment) OS=Homo sapiens GN=NDE1 PE=4 SV=1	I3L2T8_HUMAN	I3L2T8_HUMAN	Nuclear distribution protein nudE homolog 1 (Fragment) OS=Homo sapiens GN=NDE1 PE=4 SV=1	95.700000	0.006590	14255.700000	1.000000	2.000000	5.000000	Spectrum22518 scans:2031,	KVGALESK	NaN	R	L	99.000000	31.000000	45.000000	0.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	930.610000	3.000000	-0.000150	-0.160000	56.000000	63.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nuclear distribution protein nudE homolog 1 (Fragment) OS=Homo sapiens GN=NDE1 PE=4 SV=1	I3L2T8_HUMAN	I3L2T8_HUMAN	Nuclear distribution protein nudE homolog 1 (Fragment) OS=Homo sapiens GN=NDE1 PE=4 SV=1	95.700000	0.006590	14255.700000	1.000000	2.000000	5.000000	Spectrum21270 scans:2053,	KVGALESK	NaN	R	L	99.000000	33.400000	43.700000	0.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	922.630000	3.000000	-0.000500	-0.550000	56.000000	63.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	SPEE_HUMAN	SPEE_HUMAN	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	100.000000	0.023300	33806.500000	3.000000	7.000000	10.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.37150.37150.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37150"	KVLIIGGGDGGVLR	K[+28]VLIIGGGDGGVLR	R	E	98.600000	55.400000	53.300000	44.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1426.900000	3.000000	-0.000011	-0.007500	96.000000	109.000000	5.023467	1.881600	0.372400	NaN	NaN	NaN	NaN	NaN	NaN	6.313267	2.729858	0.647540	NaN	NaN	NaN	NaN	NaN	NaN	6.313267	2.729858	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	SPEE_HUMAN	SPEE_HUMAN	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	100.000000	0.111000	33806.500000	4.000000	9.000000	48.000000	Nsco_Tails_biological_replicate_3_fraction6A.21242.21242.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21242"	KVLIIGGGDGGVLR	K[+28]VLIIGGGDGGVLR	R	E	99.500000	78.600000	53.700000	62.100000	Dimethyl (+28), Dimethyl (+28)	1408.880000	3.000000	0.000900	0.640000	96.000000	109.000000	5.023467	1.881600	0.372400	NaN	NaN	NaN	NaN	NaN	NaN	6.313267	2.729858	0.647540	NaN	NaN	NaN	NaN	NaN	NaN	6.313267	2.729858	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 OS=Homo sapiens GN=NUCKS1 PE=1 SV=1	sp|Q9H1E3|NUCKS_HUMAN	NUCKS_HUMAN	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 OS=Homo sapiens GN=NUCKS1 PE=1 SV=1	100.000000	0.007900	27278.700000	3.000000	5.000000	6.000000	Spectrum47780 scans:19009,	KVVDYSQFQESDDADEDYGR	K[+28]VVDYSQFQESDDADEDYGR	R	D	99.700000	82.200000	46.800000	73.700000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2431.100000	3.000000	-0.008300	-3.400000	9.000000	28.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	MCM6_HUMAN	MCM6_HUMAN	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	100.000000	0.026900	92872.600000	2.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.10485.10485.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10485"	LAAAAEPGAGSQHLEVR	L[+28]AAAAEPGAGSQHLEVR	D	D	99.200000	79.300000	56.200000	71.900000	Dimethyl (+28)	1703.900000	3.000000	-0.000500	-0.300000	3.000000	19.000000	0.406633	0.174900	0.454567	NaN	0.350500	NaN	NaN	NaN	NaN	0.511038	0.253748	0.790413	NaN	0.475932	NaN	NaN	NaN	NaN	0.511038	0.364840	NaN	0.188169	NaN	0.236233	1.000000	0.079441	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	PSB6_HUMAN	PSB6_HUMAN	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	100.000000	0.052700	25339.900000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction2A.10757.10757.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10757"	LAAIAESGVER	L[+28]AAIAESGVER	R	Q	98.700000	56.900000	53.500000	42.600000	Dimethyl (+28)	1142.630000	2.000000	-0.000200	-0.170000	210.000000	220.000000	0.582033	0.379300	0.665567	16.583850	2.946050	0.723900	NaN	163.510486	NaN	0.731473	0.550295	1.157306	19.291959	4.000339	1.082144	NaN	69.637561	NaN	10.011716	24.729399	0.453516	0.221029	1.000000	0.630733	0.344246	0.005415	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	PSB6_HUMAN	PSB6_HUMAN	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	100.000000	0.052700	25339.900000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction2A.10758.10758.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10758"	LAAIAESGVER	L[+28]AAIAESGVER	R	Q	99.700000	69.600000	53.500000	36.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1152.640000	2.000000	-0.000059	-0.051000	210.000000	220.000000	0.582033	0.379300	0.665567	16.583850	2.946050	0.723900	NaN	163.510486	NaN	0.731473	0.550295	1.157306	19.291959	4.000339	1.082144	NaN	69.637561	NaN	10.011716	24.729399	0.453516	0.221029	1.000000	0.630215	0.343735	0.005413	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	TERA_HUMAN	TERA_HUMAN	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	100.000000	0.020200	89306.800000	3.000000	5.000000	7.000000	Nsco_Tails_biological_replicate1_apoptosis.27131.27131.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27131"	LAALCSEAALQAIR	L[+28]AALC[+57]SEAALQAIR	D	K	99.700000	99.700000	55.900000	86.500000	Dimethyl (+28), Carbamidomethyl (+57)	1513.830000	2.000000	-0.000440	-0.290000	411.000000	424.000000	0.732500	0.322567	0.426567	0.770200	0.473800	0.615750	NaN	NaN	NaN	0.920573	0.467985	0.741726	0.895972	0.643357	0.920472	NaN	NaN	NaN	0.908273	0.555671	0.008621	0.099638	0.048961	1.000000	0.343225	0.079305	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	RS3A_HUMAN	RS3A_HUMAN	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	100.000000	0.009220	29927.300000	6.000000	7.000000	7.000000	Spectrum10000 scans:36105,	LADLQNDEVAFR	L[+28]ADLQNDEVAFR	S	K	99.700000	81.800000	50.300000	64.900000	Dimethyl (+28), Label:13C(6) (+6)	1423.740000	2.000000	-0.003000	-2.100000	71.000000	82.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	TBCB_HUMAN	TBCB_HUMAN	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	100.000000	0.007900	27307.500000	4.000000	6.000000	6.000000	Spectrum39984 scans:10027,	LAEEKAQASSIPVGSR	L[+28]AEEKAQASSIPVGSR	R	C	99.700000	80.100000	52.500000	64.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1715.950000	3.000000	0.001000	0.590000	149.000000	164.000000	15.959867	6.186300	0.344967	NaN	NaN	NaN	NaN	NaN	NaN	20.057643	8.975191	0.599838	NaN	NaN	NaN	NaN	NaN	NaN	20.057643	8.975191	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC	sp|Q00610|CLH1_HUMAN	CLH1_HUMAN	Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5	100.000000	0.011900	191600.900000	7.000000	9.000000	9.000000	Spectrum12410 scans:45393,	LAELEEFINGPNNAH	L[+28]AELEEFINGPNNAH	R	I	99.700000	51.400000	49.400000	41.800000	Dimethyl (+28)	1694.830000	3.000000	-0.001000	-0.590000	1183.000000	1197.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	PDIA1_HUMAN	PDIA1_HUMAN	Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3	100.000000	0.022400	57100.100000	4.000000	9.000000	17.000000	Spectrum51562 scans:23346,	LAKVDATEESDLAQQYGVR	L[+28]AKVDATEESDLAQQYGVR	R	G	99.700000	50.400000	54.200000	37.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2158.150000	3.000000	-0.003300	-1.500000	79.000000	97.000000	3.498600	1.808467	0.579033	13.545050	0.357350	NaN	NaN	NaN	NaN	4.396883	2.623755	1.006839	15.756929	0.485233	NaN	NaN	NaN	NaN	10.076906	1.554494	0.236283	0.383580	0.244747	0.387150	0.337713	0.079197	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3	AATC_HUMAN	AATC_HUMAN	Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3	100.000000	0.011900	46230.100000	4.000000	6.000000	9.000000	Spectrum42348 scans:12745,	LALGDDSPALKEKR	L[+28]ALGDDSPALKEKR	R	V	98.800000	34.300000	51.200000	22.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1621.960000	3.000000	-0.001200	-0.710000	87.000000	100.000000	6.429567	2.705100	0.406533	2.408400	NaN	4.153300	NaN	NaN	NaN	8.080390	3.924606	0.706892	2.801687	NaN	6.208685	NaN	NaN	NaN	5.441039	3.924606	0.287525	NaN	1.000000	NaN	0.337221	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3	AATC_HUMAN	AATC_HUMAN	Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3	100.000000	0.011900	46230.100000	4.000000	6.000000	9.000000	Spectrum42313 scans:12706,	LALGDDSPALKEKR	L[+28]ALGDDSPALKEKR	R	V	99.700000	39.900000	49.600000	28.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1610.000000	4.000000	-0.000260	-0.160000	87.000000	100.000000	6.429567	2.705100	0.406533	2.408400	NaN	4.153300	NaN	NaN	NaN	8.080390	3.924606	0.706892	2.801687	NaN	6.208685	NaN	NaN	NaN	5.441039	3.924606	0.287525	NaN	0.510338	NaN	0.336730	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.003950	19463.200000	2.000000	3.000000	3.000000	Spectrum54296 scans:26438,	LASPEYVNLPINGNGKQ	L[+28]ASPEYVNLPINGNGKQ	F	-	99.500000	39.800000	53.200000	26.800000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1873.030000	3.000000	0.000830	0.450000	158.000000	174.000000	1.986633	0.950767	0.504967	2.613600	16.955450	9.966000	NaN	NaN	NaN	2.496711	1.379389	0.878050	3.040396	23.023219	14.897974	NaN	NaN	NaN	2.768554	12.201304	0.062309	0.412736	0.177807	0.594025	0.336240	0.079088	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.037300	19463.200000	7.000000	13.000000	16.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.45106.45106.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=45106"	LASPEYVNLPINGNGKQ	L[+28]ASPEYVNLPINGNGKQ	F	-	98.600000	61.000000	57.600000	51.400000	Dimethyl (+28), Dimethyl (+28)	1869.000000	2.000000	0.001700	0.920000	158.000000	174.000000	1.986633	0.950767	0.504967	2.613600	16.955450	9.966000	NaN	NaN	NaN	2.496711	1.379389	0.878050	3.040396	23.023219	14.897974	NaN	NaN	NaN	2.768554	12.201304	0.062309	0.412736	0.177661	0.759382	0.335752	0.078980	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.040800	82573.600000	11.000000	21.000000	31.000000	Spectrum64356 scans:38465,	LASVLGSEPSLDSEVTSKLKSYEFR	L[+28]ASVLGSEPSLDSEVTSKLKSYEFR	R	G	99.700000	62.500000	56.700000	51.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2851.550000	4.000000	0.002300	0.820000	216.000000	240.000000	1.604600	1.213100	0.943700	0.911100	1.318850	1.616200	NaN	NaN	NaN	2.016589	1.759986	1.640932	1.059881	1.790821	2.416025	NaN	NaN	NaN	1.538235	1.775404	0.191938	0.005528	0.720807	0.010166	0.335266	0.078953	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4	sp|O75083|WDR1_HUMAN	WDR1_HUMAN	WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4	100.000000	0.011900	66175.200000	4.000000	6.000000	9.000000	Spectrum69381 scans:44270,	LATGSDDNCAAFFEGPPFKFKF	L[+28]ATGSDDNC[+57]AAFFEGPPFKFKF	R	T	99.700000	55.400000	53.000000	55.400000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	2565.260000	3.000000	0.002000	0.770000	162.000000	183.000000	4.016700	2.451800	0.553900	0.173050	NaN	NaN	NaN	NaN	NaN	5.048008	3.557114	0.963137	0.201309	NaN	NaN	NaN	NaN	NaN	2.624658	3.557114	0.474626	NaN	0.475998	NaN	0.334781	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4	sp|O75083|WDR1_HUMAN	WDR1_HUMAN	WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4	100.000000	0.011900	66175.200000	4.000000	6.000000	9.000000	Spectrum69363 scans:44249,	LATGSDDNCAAFFEGPPFKFKF	L[+28]ATGSDDNC[+57]AAFFEGPPFKFKF	R	T	99.700000	56.100000	53.800000	56.100000	Dimethyl (+28), Carbamidomethyl (+57), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	2557.280000	3.000000	-0.000860	-0.340000	162.000000	183.000000	4.016700	2.451800	0.553900	0.173050	NaN	NaN	NaN	NaN	NaN	5.048008	3.557114	0.963137	0.201309	NaN	NaN	NaN	NaN	NaN	2.624658	3.557114	0.474626	NaN	0.475860	NaN	0.334297	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.008640	144715.800000	3.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.49172.49172.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=49172"	LAVAEALTNLVF	L[+28]AVAEALTNLVF	R	A	99.700000	75.600000	54.500000	44.000000	Dimethyl (+28)	1287.740000	2.000000	-0.000130	-0.100000	742.000000	753.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Homo sapiens GN=AHSA1 PE=1 SV=1	AHSA1_HUMAN	AHSA1_HUMAN	Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Homo sapiens GN=AHSA1 PE=1 SV=1	100.000000	0.007900	38256.400000	4.000000	5.000000	6.000000	Spectrum52214 scans:24131,	LAVQVQNEEGKCEVTEVSKLDGEASINNR	L[+28]AVQVQNEEGKC[+57]EVTEVSKLDGEASINNR	F	K	99.700000	53.500000	57.000000	53.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	3325.700000	4.000000	-0.001500	-0.450000	45.000000	73.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.017300	49956.400000	5.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.12450.12450.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12450"	LDDCGLTEAR	L[+28]DDC[+57]GLTEAR	R	C	98.900000	50.100000	48.200000	39.400000	Dimethyl (+28), Carbamidomethyl (+57)	1176.550000	2.000000	0.000710	0.610000	35.000000	44.000000	1.816367	1.898167	1.253733	0.685250	1.451850	4.961450	NaN	NaN	NaN	2.282728	2.753893	2.180027	0.797150	1.971417	7.416773	NaN	NaN	NaN	1.539939	2.362655	0.286115	0.104471	0.661438	0.104622	0.331423	0.078792	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit C OS=Homo sapiens GN=EIF3C PE=1 SV=1	EIF3C_HUMAN	EIF3C_HUMAN	Eukaryotic translation initiation factor 3 subunit C OS=Homo sapiens GN=EIF3C PE=1 SV=1	100.000000	0.006590	105329.200000	4.000000	5.000000	5.000000	Spectrum7005 scans:27556,	LDEEEEDNEGGEWER	L[+28]DEEEEDNEGGEWER	R	V	99.300000	50.300000	35.200000	46.100000	Dimethyl (+28)	1862.740000	2.000000	-0.004300	-2.300000	289.000000	303.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit C OS=Homo sapiens GN=EIF3C PE=1 SV=1	EIF3C_HUMAN	EIF3C_HUMAN	Eukaryotic translation initiation factor 3 subunit C OS=Homo sapiens GN=EIF3C PE=1 SV=1	100.000000	0.006590	105329.200000	4.000000	5.000000	5.000000	Spectrum7018 scans:27587,	LDEEEEDNEGGEWER	L[+28]DEEEEDNEGGEWER	R	V	99.700000	94.100000	37.800000	93.200000	Dimethyl (+28), Label:13C(6) (+6)	1868.760000	2.000000	-0.001700	-0.900000	289.000000	303.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens GN=PSMD6 PE=1 SV=1	PSMD6_HUMAN	PSMD6_HUMAN	26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens GN=PSMD6 PE=1 SV=1	100.000000	0.026300	45515.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction2A.19495.19495.3 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19495"	LDEELEDAEKNLGESEIR	L[+28]DEELEDAEKNLGESEIR	R	D	99.200000	76.400000	57.600000	74.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2154.100000	3.000000	0.004200	1.900000	84.000000	101.000000	13.558333	4.609033	1.862667	NaN	NaN	NaN	NaN	NaN	NaN	17.039504	6.686865	3.238857	NaN	NaN	NaN	NaN	NaN	NaN	17.039504	6.686865	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens GN=PSMD6 PE=1 SV=1	PSMD6_HUMAN	PSMD6_HUMAN	26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens GN=PSMD6 PE=1 SV=1	100.000000	0.005270	45515.400000	2.000000	4.000000	4.000000	Spectrum20930 scans:19486,	LDEELEDAEKNLGESEIR	L[+28]DEELEDAEKNLGESEIR	R	D	99.700000	64.000000	52.000000	50.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2162.070000	3.000000	-0.000170	-0.081000	84.000000	101.000000	13.558333	4.609033	1.862667	NaN	NaN	NaN	NaN	NaN	NaN	17.039504	6.686865	3.238857	NaN	NaN	NaN	NaN	NaN	NaN	17.039504	6.686865	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	CAN1_HUMAN	CAN1_HUMAN	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	100.000000	0.009220	81874.600000	3.000000	6.000000	7.000000	Spectrum41529 scans:11828,	LDETDDPDDYGDR	L[+28]DETDDPDDYGDR	R	E	99.700000	77.300000	35.800000	61.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1562.620000	2.000000	-0.002000	-1.300000	401.000000	413.000000	NaN	NaN	10.641767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.504202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	CAN1_HUMAN	CAN1_HUMAN	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	100.000000	0.011600	81874.600000	2.000000	4.000000	5.000000	Nsco_Tails_biological_replicate_3_fraction6A.11809.11809.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11809"	LDETDDPDDYGDR	L[+28]DETDDPDDYGDR	R	E	99.700000	69.700000	37.500000	57.000000	Dimethyl (+28)	1552.610000	2.000000	-0.012000	-7.400000	401.000000	413.000000	NaN	NaN	10.641767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	18.504202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.032700	16100.700000	5.000000	11.000000	14.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.58142.58142.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=58142"	LDFETGDAGASATFPMQCSALR	L[+28]DFETGDAGASATFPMQC[+57]SALR	D	K	99.700000	67.400000	50.300000	67.400000	Dimethyl (+28), Carbamidomethyl (+57)	2372.070000	2.000000	-0.012000	-5.300000	5.000000	26.000000	0.529800	0.862767	NaN	0.676600	0.183400	0.210100	NaN	NaN	NaN	0.665829	1.251717	NaN	0.787087	0.249033	0.314074	NaN	NaN	NaN	0.726458	0.750375	0.053009	0.374975	0.225693	0.403462	0.323996	0.078471	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1	NP1L1_HUMAN	NP1L1_HUMAN	Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1	100.000000	0.008640	45357.000000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.34755.34755.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34755"	LDGLVETPTGYIESLPR	L[+28]DGLVETPTGYIESLPR	R	V	99.700000	84.500000	57.400000	63.300000	Dimethyl (+28)	1887.000000	2.000000	0.000056	0.030000	56.000000	72.000000	0.592533	0.284967	0.469533	0.978750	1.658100	1.735000	NaN	NaN	NaN	0.744669	0.413435	0.816438	1.138578	2.251477	2.593617	NaN	NaN	NaN	0.941624	1.332456	0.131266	0.384387	0.558202	0.413460	0.323543	0.078445	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	RS8_HUMAN	RS8_HUMAN	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	100.000000	0.015800	24188.400000	4.000000	9.000000	12.000000	Spectrum12255 scans:44431,	LDVGNFSWGSECCTR	L[+28]DVGNFSWGSEC[+57]C[+57]TR	R	K	99.700000	93.000000	41.000000	77.900000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1824.780000	2.000000	-0.003100	-1.700000	60.000000	74.000000	0.438567	0.168733	0.377533	28.125800	85.679000	3.082300	NaN	NaN	NaN	0.551171	0.244801	0.656466	32.718685	116.340553	4.607669	NaN	NaN	NaN	16.634928	58.292677	0.464947	0.484419	1.000000	0.484419	0.323091	0.078392	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	RS8_HUMAN	RS8_HUMAN	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	100.000000	0.009330	24188.400000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.55006.55006.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=55006"	LDVGNFSWGSECCTR	L[+28]DVGNFSWGSEC[+57]C[+57]TR	R	K	99.700000	82.600000	44.000000	82.600000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57)	1814.770000	2.000000	-0.006300	-3.400000	60.000000	74.000000	0.438567	0.168733	0.377533	28.125800	85.679000	3.082300	NaN	NaN	NaN	0.551171	0.244801	0.656466	32.718685	116.340553	4.607669	NaN	NaN	NaN	16.634928	58.292677	0.464947	0.484419	0.899312	1.000000	0.322641	0.078365	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2	IF2B_HUMAN	IF2B_HUMAN	Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2	100.000000	0.005010	38371.700000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.4698.4698.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4698"	LEADEEDTR	L[+28]EADEEDTR	D	K	99.700000	65.100000	46.300000	42.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1114.500000	2.000000	-0.001900	-1.700000	54.000000	62.000000	0.376767	1.390867	1.011533	0.788500	0.153650	0.195800	NaN	NaN	NaN	0.473503	2.017893	1.758883	0.917260	0.208636	0.292698	NaN	NaN	NaN	0.695382	1.113265	0.196628	0.434411	1.000000	0.493908	0.322191	0.078338	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	sp|Q9H3K6-2|BOLA2_HUMAN	BOLA2_HUMAN	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	100.000000	0.011500	6823.700000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.14923.14923.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14923"	LEAEHVEVEDTTLNR	L[+28]EAEHVEVEDTTLNR	D	C	98.700000	66.700000	54.400000	54.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1791.880000	3.000000	-0.003200	-1.800000	16.000000	30.000000	0.837000	0.463300	0.552667	NaN	0.918650	NaN	NaN	NaN	NaN	1.051904	0.672164	0.960992	NaN	1.247403	NaN	NaN	NaN	NaN	1.051904	0.959783	NaN	0.185355	NaN	0.210672	1.000000	0.078312	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Non-brain of Clathrin light chain A OS=Homo sapiens GN=CLTA	sp|P09496|CLCA_HUMAN	CLCA_HUMAN	Clathrin light chain A OS=Homo sapiens GN=CLTA PE=1 SV=1	100.000000	0.003950	27058.700000	2.000000	3.000000	3.000000	Spectrum17438 scans:8305,	LEALDANSR	L[+28]EALDANSR	R	K	98.900000	57.800000	47.600000	32.200000	Dimethyl (+28)	1015.530000	2.000000	0.000740	0.730000	121.000000	129.000000	0.457000	0.273700	0.574867	0.969450	2.651950	6.396450	NaN	NaN	NaN	0.574337	0.397089	0.999594	1.127759	3.600991	9.561925	NaN	NaN	NaN	0.851048	1.999040	0.200128	0.430081	0.702878	1.000000	0.321296	0.078285	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L36a-like OS=Homo sapiens GN=RPL36AL PE=1 SV=3	RL36L_HUMAN	RL36L_HUMAN	60S ribosomal protein L36a-like OS=Homo sapiens GN=RPL36AL PE=1 SV=3	100.000000	0.003950	12451.100000	1.000000	3.000000	3.000000	Spectrum3210 scans:17955,	LECVEPNCR	L[+28]EC[+57]VEPNC[+57]R	R	S	99.000000	48.100000	43.100000	37.700000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57)	1203.540000	2.000000	-0.001600	-1.300000	70.000000	78.000000	2.093733	4.395667	0.580267	NaN	3.121000	NaN	NaN	NaN	NaN	2.631310	6.377309	1.008984	NaN	4.237898	NaN	NaN	NaN	NaN	2.631310	5.307604	NaN	0.126610	NaN	0.781735	1.000000	0.078259	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L36a-like OS=Homo sapiens GN=RPL36AL PE=1 SV=3	RL36L_HUMAN	RL36L_HUMAN	60S ribosomal protein L36a-like OS=Homo sapiens GN=RPL36AL PE=1 SV=3	100.000000	0.003950	12451.100000	1.000000	3.000000	3.000000	Spectrum16836 scans:7071,	LECVEPNCR	L[+28]EC[+57]VEPNC[+57]R	R	S	99.200000	49.500000	44.500000	34.500000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6) (+6)	1209.560000	2.000000	-0.000720	-0.600000	70.000000	78.000000	2.093733	4.395667	0.580267	NaN	3.121000	NaN	NaN	NaN	NaN	2.631310	6.377309	1.008984	NaN	4.237898	NaN	NaN	NaN	NaN	2.631310	5.307604	NaN	0.126610	NaN	0.135388	1.000000	0.078232	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1	PRS8_HUMAN	PRS8_HUMAN	26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1	100.000000	0.039500	45609.100000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.3978.3978.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3978"	LEGGSGGDSEVQR	L[+28]EGGSGGDSEVQR	R	T	99.300000	60.300000	49.700000	50.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1327.620000	2.000000	0.000017	0.013000	259.000000	271.000000	0.546433	0.135033	0.240567	10.968250	NaN	NaN	0.414457	0.567971	0.656814	0.686733	0.195909	0.418304	12.759343	NaN	NaN	0.277201	0.241894	0.314747	4.574426	0.218901	0.368726	0.066624	0.680212	0.071221	0.021816	0.078206	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1	PRS8_HUMAN	PRS8_HUMAN	26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1	100.000000	0.005270	45609.100000	2.000000	3.000000	4.000000	Spectrum15034 scans:3977,	LEGGSGGDSEVQR	L[+28]EGGSGGDSEVQR	R	T	99.700000	71.200000	45.800000	52.800000	Dimethyl (+28)	1317.620000	2.000000	-0.000320	-0.240000	259.000000	271.000000	0.546433	0.135033	0.240567	10.968250	NaN	NaN	0.414457	0.567971	0.656814	0.686733	0.195909	0.418304	12.759343	NaN	NaN	0.277201	0.241894	0.314747	4.574426	0.218901	0.368726	0.066624	0.679850	0.070634	0.021786	0.078180	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.017300	82573.600000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.42779.42779.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42779"	LEGSDVQLLEYEASAAGLIR	L[+28]EGSDVQLLEYEASAAGLIR	R	S	98.900000	63.300000	58.200000	54.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2171.130000	2.000000	-0.009700	-4.500000	679.000000	698.000000	0.692900	0.302900	0.437100	NaN	NaN	0.054450	NaN	NaN	NaN	0.870806	0.439453	0.760042	NaN	NaN	0.081396	NaN	NaN	NaN	0.870806	0.439453	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.017300	82573.600000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.42767.42767.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42767"	LEGSDVQLLEYEASAAGLIR	L[+28]EGSDVQLLEYEASAAGLIR	R	S	99.700000	84.200000	58.400000	76.300000	Dimethyl (+28)	2161.130000	2.000000	0.001100	0.490000	679.000000	698.000000	0.692900	0.302900	0.437100	NaN	NaN	0.054450	NaN	NaN	NaN	0.870806	0.439453	0.760042	NaN	NaN	0.081396	NaN	NaN	NaN	0.870806	0.439453	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.040800	82573.600000	11.000000	21.000000	31.000000	Spectrum70836 scans:46189,	LEGSDVQLLEYEASAAGLIR	L[+28]EGSDVQLLEYEASAAGLIR	R	S	98.900000	38.000000	54.100000	22.100000	Dimethyl (+28), Label:13C(6) (+6)	2167.150000	3.000000	-0.001500	-0.700000	679.000000	698.000000	0.692900	0.302900	0.437100	NaN	NaN	0.054450	NaN	NaN	NaN	0.870806	0.439453	0.760042	NaN	NaN	0.081396	NaN	NaN	NaN	0.870806	0.439453	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1	NC2B_HUMAN	NC2B_HUMAN	Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1	100.000000	0.005760	19425.700000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.32444.32444.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32444"	LENLGIPEEELLR	L[+28]ENLGIPEEELLR	R	Q	99.700000	80.100000	56.200000	58.300000	Dimethyl (+28)	1551.850000	2.000000	0.003500	2.300000	108.000000	120.000000	0.597800	0.318433	0.532000	2.230250	2.054700	0.794100	NaN	NaN	NaN	0.751288	0.461989	0.925057	2.594445	2.790006	1.187084	NaN	NaN	NaN	1.672867	1.625997	0.320559	0.395532	1.000000	1.000000	0.317766	0.078048	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1	NC2B_HUMAN	NC2B_HUMAN	Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1	100.000000	0.016200	19425.700000	2.000000	4.000000	7.000000	Nsco_Tails_biological_replicate_3_fraction6A.34675.34675.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34675"	LENLGIPEEELLR	L[+28]ENLGIPEEELLR	R	Q	99.700000	103.000000	56.300000	79.900000	Dimethyl (+28), Label:13C(6) (+6)	1557.870000	2.000000	-0.005800	-3.700000	108.000000	120.000000	0.597800	0.318433	0.532000	2.230250	2.054700	0.794100	NaN	NaN	NaN	0.751288	0.461989	0.925057	2.594445	2.790006	1.187084	NaN	NaN	NaN	1.672867	1.625997	0.320559	0.395532	1.000000	0.586788	0.317330	0.078021	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	DHSO_HUMAN	DHSO_HUMAN	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	100.000000	0.018400	38306.600000	4.000000	9.000000	14.000000	Spectrum60053 scans:33309,	LENYPIPEPGPNEVLLR	L[+28]ENYPIPEPGPNEVLLR	R	M	99.300000	64.200000	53.500000	48.200000	Dimethyl (+28)	1977.050000	2.000000	-0.003600	-1.800000	22.000000	38.000000	0.578667	0.393633	0.669967	NaN	1.075250	1.275300	NaN	NaN	NaN	0.727242	0.571090	1.164957	NaN	1.460045	1.906421	NaN	NaN	NaN	0.727242	1.015567	NaN	0.262636	NaN	0.486571	1.000000	0.077969	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	DHSO_HUMAN	DHSO_HUMAN	Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4	100.000000	0.018400	38306.600000	4.000000	9.000000	14.000000	Spectrum60074 scans:33334,	LENYPIPEPGPNEVLLR	L[+28]ENYPIPEPGPNEVLLR	R	M	99.700000	97.900000	53.700000	82.400000	Dimethyl (+28), Label:13C(6) (+6)	1983.080000	2.000000	-0.002000	-0.990000	22.000000	38.000000	0.578667	0.393633	0.669967	NaN	1.075250	1.275300	NaN	NaN	NaN	0.727242	0.571090	1.164957	NaN	1.460045	1.906421	NaN	NaN	NaN	0.727242	1.015567	NaN	0.262636	NaN	0.388303	1.000000	0.077942	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Tubulin beta-6 chain (Fragment) OS=Homo sapiens GN=TUBB6 PE=4 SV=1	tr|K7EK43|K7EK43_HUMAN	K7EK43_HUMAN	Tubulin beta-6 chain (Fragment) OS=Homo sapiens GN=TUBB6 PE=4 SV=1	1.500000	0.000000	0.000000	0.000000	0.000000	0.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.12304.12304.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12304"	LEPGTMDSVR	L[+28]EPGTMDSVR	D	S	98.900000	47.900000	51.000000	27.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1141.570000	2.000000	0.000095	0.083000	0.000000	0.000000	0.687300	0.243800	0.355800	0.730750	0.290550	0.400300	1.145700	3.965143	2.215800	0.863768	0.353709	0.618675	0.850080	0.394528	0.598400	0.766278	1.688717	1.061817	0.826708	0.812318	0.001356	0.205051	0.001479	0.303035	0.021518	0.005312	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Tubulin beta-6 chain (Fragment) OS=Homo sapiens GN=TUBB6 PE=4 SV=1	tr|K7EK43|K7EK43_HUMAN	K7EK43_HUMAN	Tubulin beta-6 chain (Fragment) OS=Homo sapiens GN=TUBB6 PE=4 SV=1	1.500000	0.000000	0.000000	0.000000	0.000000	0.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.12268.12268.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12268"	LEPGTMDSVR	L[+28]EPGTMDSVR	D	S	99.100000	48.400000	50.000000	37.000000	Dimethyl (+28), Oxidation (+16)	1147.550000	2.000000	-0.001200	-1.000000	0.000000	0.000000	0.687300	0.243800	0.355800	0.730750	0.290550	0.400300	1.145700	3.965143	2.215800	0.863768	0.353709	0.618675	0.850080	0.394528	0.598400	0.766278	1.688717	1.061817	0.826708	0.812318	0.001356	0.205051	0.013143	0.302906	0.021459	0.005311	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	PLPP_HUMAN	PLPP_HUMAN	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	100.000000	0.011900	31680.800000	6.000000	9.000000	9.000000	Spectrum53240 scans:25264,	LETDILFGHR	L[+28]ETDILFGHR	R	C	99.500000	38.500000	50.000000	23.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1237.670000	3.000000	-0.001000	-0.830000	240.000000	249.000000	2.737267	2.359433	4.088667	NaN	NaN	NaN	NaN	NaN	NaN	3.440074	3.423107	7.109488	NaN	NaN	NaN	NaN	NaN	NaN	3.440074	3.423107	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	sp|P28074|PSB5_HUMAN	PSB5_HUMAN	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	100.000000	0.012500	28463.000000	3.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.23032.23032.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23032"	LEVEQAYDLAR	L[+28]EVEQAYDLAR	D	R	99.600000	57.400000	53.600000	44.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1343.690000	2.000000	-0.002000	-1.500000	206.000000	216.000000	0.713767	1.141433	1.438200	0.753400	0.456950	0.606700	NaN	NaN	NaN	0.897030	1.656011	2.500782	0.876429	0.620477	0.906944	NaN	NaN	NaN	0.886729	1.138244	0.007395	0.271777	0.010696	0.710141	0.313885	0.077785	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	sp|P28074|PSB5_HUMAN	PSB5_HUMAN	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	100.000000	0.013400	28463.000000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.20126.20126.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20126"	LEVEQAYDLAR	L[+28]EVEQAYDLAR	D	R	99.700000	73.100000	53.500000	56.700000	Dimethyl (+28)	1333.690000	2.000000	-0.000058	-0.043000	206.000000	216.000000	0.713767	1.141433	1.438200	0.753400	0.456950	0.606700	NaN	NaN	NaN	0.897030	1.656011	2.500782	0.876429	0.620477	0.906944	NaN	NaN	NaN	0.886729	1.138244	0.007395	0.271777	0.018703	0.709607	0.313460	0.077707	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1	sp|Q9Y2Z0-2|SUGT1_HUMAN	SUGT1_HUMAN	Isoform 2 of Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1	100.000000	0.030300	37787.100000	3.000000	6.000000	23.000000	Spectrum47049 scans:18178,	LFQQIYSDGSDEVKR	L[+28]FQQIYSDGSDEVKR	R	A	99.700000	58.700000	52.200000	49.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1857.960000	3.000000	-0.002700	-1.400000	280.000000	294.000000	3.483167	0.779833	NaN	0.009000	NaN	87.121150	NaN	NaN	NaN	4.377487	1.131396	NaN	0.010470	NaN	130.235668	NaN	NaN	NaN	2.193979	1.131396	0.498477	NaN	0.591356	NaN	0.313036	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2	SYMC_HUMAN	SYMC_HUMAN	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2	100.000000	0.005270	101099.500000	3.000000	4.000000	4.000000	Spectrum13106 scans:48852,	LFVSDGVPGCLPVLAAAGR	L[+28]FVSDGVPGC[+57]LPVLAAAGR	R	A	99.700000	47.500000	53.400000	34.800000	Dimethyl (+28), Carbamidomethyl (+57)	1926.040000	3.000000	-0.001700	-0.880000	3.000000	21.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C	sp|Q9UNZ2|NSF1C_HUMAN	NSF1C_HUMAN	NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2	100.000000	0.014500	40555.200000	6.000000	10.000000	11.000000	Spectrum43508 scans:14095,	LGAAPEEESAYVAGEKR	L[+28]GAAPEEESAYVAGEKR	R	Q	99.700000	52.400000	52.800000	46.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1841.980000	3.000000	-0.001500	-0.810000	157.000000	173.000000	2.003467	0.983800	1.442900	0.522550	0.011700	0.076100	NaN	NaN	NaN	2.517867	1.427314	2.508955	0.607881	0.015887	0.113760	NaN	NaN	NaN	1.562874	0.721601	0.349189	0.492914	1.000000	1.000000	0.312191	0.077525	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C	sp|Q9UNZ2|NSF1C_HUMAN	NSF1C_HUMAN	NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2	100.000000	0.014500	40555.200000	6.000000	10.000000	11.000000	Spectrum43523 scans:14111,	LGAAPEEESAYVAGEKR	L[+28]GAAPEEESAYVAGEKR	R	Q	99.700000	66.200000	52.300000	51.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1849.960000	3.000000	0.003600	1.900000	157.000000	173.000000	2.003467	0.983800	1.442900	0.522550	0.011700	0.076100	NaN	NaN	NaN	2.517867	1.427314	2.508955	0.607881	0.015887	0.113760	NaN	NaN	NaN	1.562874	0.721601	0.349189	0.492914	1.000000	1.000000	0.311770	0.077499	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=1 SV=2	E9PEX6_HUMAN	E9PEX6_HUMAN	Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=4 SV=1	100.000000	0.004630	51797.700000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction6A.33414.33414.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33414"	LGADVTAVEFLGH	L[+28]GADVTAVEFLGH	R	V	99.700000	78.900000	53.900000	70.300000	Dimethyl (+28)	1355.710000	2.000000	-0.000350	-0.260000	212.000000	224.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.065900	83149.600000	5.000000	13.000000	50.000000	Spectrum64044 scans:38111,	LGDAVEQGVINNTVLGY	L[+28]GDAVEQGVINNTVLGY	R	F	99.100000	56.500000	52.000000	44.500000	Dimethyl (+28)	1788.930000	2.000000	-0.000340	-0.190000	392.000000	408.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Phospholipase A-2-activating protein OS=Homo sapiens GN=PLAA PE=1 SV=2	PLAP_HUMAN	PLAP_HUMAN	Phospholipase A-2-activating protein OS=Homo sapiens GN=PLAA PE=1 SV=2	99.300000	0.002500	87141.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.18357.18357.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18357"	LGDINAEQLPGR	L[+28]GDINAEQLPGR	D	E	99.200000	53.800000	54.200000	38.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1319.710000	2.000000	-0.002100	-1.600000	329.000000	340.000000	0.577033	0.281067	0.504567	0.655050	0.228700	0.331300	NaN	NaN	NaN	0.725190	0.407776	0.877355	0.762018	0.310544	0.495254	NaN	NaN	NaN	0.743604	0.359160	0.015762	0.085653	0.034792	0.123685	0.310515	0.077421	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	RL22_HUMAN	RL22_HUMAN	60S ribosomal protein L22 OS=Homo sapiens GN=RPL22 PE=1 SV=2	100.000000	0.057600	14769.300000	4.000000	11.000000	23.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.13640.13640.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13640"	LGGGVVTIER	LGGGVVTIER	N	S	98.900000	49.200000	52.600000	16.700000		999.570000	2.000000	0.000180	0.180000	56.000000	65.000000	1.385633	0.709467	0.625767	0.944700	0.187150	0.323500	NaN	NaN	NaN	1.741402	1.029307	1.088101	1.098968	0.254125	0.483594	NaN	NaN	NaN	1.420185	0.641716	0.141608	0.345907	0.312384	1.000000	0.309683	0.077317	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosyl pyrophosphate synthase-associated protein 2 OS=Homo sapiens GN=PRPSAP2 PE=1 SV=1	KPRB_HUMAN	KPRB_HUMAN	Phosphoribosyl pyrophosphate synthase-associated protein 2 OS=Homo sapiens GN=PRPSAP2 PE=1 SV=1	100.000000	0.003950	40908.600000	2.000000	3.000000	3.000000	Spectrum57462 scans:30190,	LGIAVIHGEAQDAESDLVDGR	L[+28]GIAVIHGEAQDAESDLVDGR	R	H	99.700000	51.100000	53.000000	42.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2202.110000	3.000000	-0.002500	-1.100000	205.000000	225.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosyl pyrophosphate synthase-associated protein 2 OS=Homo sapiens GN=PRPSAP2 PE=1 SV=1	KPRB_HUMAN	KPRB_HUMAN	Phosphoribosyl pyrophosphate synthase-associated protein 2 OS=Homo sapiens GN=PRPSAP2 PE=1 SV=1	100.000000	0.003950	40908.600000	2.000000	3.000000	3.000000	Spectrum57469 scans:30197,	LGIAVIHGEAQDAESDLVDGR	L[+28]GIAVIHGEAQDAESDLVDGR	R	H	99.700000	77.500000	53.000000	76.000000	Dimethyl (+28)	2192.110000	3.000000	0.000560	0.260000	205.000000	225.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	XPOT_HUMAN	XPOT_HUMAN	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	100.000000	0.017100	109948.600000	2.000000	6.000000	13.000000	Spectrum29997 scans:15316,	LGLNPNADSDFR	LGLNPNADSDFR	L	Q	99.700000	64.500000	47.100000	45.200000	Label:13C(6)15N(4) (+10)	1327.640000	2.000000	-0.001700	-1.300000	7.000000	18.000000	0.223733	0.123900	1.714400	NaN	7.585850	NaN	NaN	NaN	NaN	0.281178	0.179756	2.981047	NaN	10.300564	NaN	NaN	NaN	NaN	0.281178	5.240160	NaN	0.488558	NaN	1.000000	1.000000	0.077137	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	XPOT_HUMAN	XPOT_HUMAN	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	100.000000	0.017100	109948.600000	2.000000	6.000000	13.000000	Spectrum29981 scans:15250,	LGLNPNADSDFR	LGLNPNADSDFR	L	Q	99.700000	75.700000	47.800000	61.100000	Label:13C(6) (+6)	1323.650000	2.000000	-0.000870	-0.660000	7.000000	18.000000	0.223733	0.123900	1.714400	NaN	7.585850	NaN	NaN	NaN	NaN	0.281178	0.179756	2.981047	NaN	10.300564	NaN	NaN	NaN	NaN	0.281178	5.240160	NaN	0.488558	NaN	1.000000	1.000000	0.076983	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	XPOT_HUMAN	XPOT_HUMAN	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	100.000000	0.017100	109948.600000	2.000000	6.000000	13.000000	Spectrum30000 scans:15323,	LGLNPNADSDFR	LGLNPNADSDFR	L	Q	99.700000	88.400000	46.900000	75.300000		1317.630000	2.000000	-0.002300	-1.800000	7.000000	18.000000	0.223733	0.123900	1.714400	NaN	7.585850	NaN	NaN	NaN	NaN	0.281178	0.179756	2.981047	NaN	10.300564	NaN	NaN	NaN	NaN	0.281178	5.240160	NaN	0.488558	NaN	1.000000	1.000000	0.076957	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	SODC_HUMAN	SODC_HUMAN	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	100.000000	0.049000	15917.300000	7.000000	17.000000	17.000000	Nsco_Tails_biological_replicate1_apoptosis.35191.35191.4 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35191"	LGNVTADKDGVADVSIEDSVISLSGDHCIIGR	L[+28]GNVTADKDGVADVSIEDSVISLSGDHC[+57]IIGR	D	T	99.700000	90.500000	61.500000	85.900000	Dimethyl (+28), Dimethyl (+28), Carbamidomethyl (+57)	3367.690000	4.000000	0.000430	0.130000	85.000000	116.000000	19.506300	13.628733	0.646767	0.442400	0.091400	9.141950	NaN	NaN	NaN	24.514641	19.772802	1.124616	0.514643	0.124109	13.666119	NaN	NaN	NaN	12.514642	9.948455	0.467266	0.492099	1.000000	1.000000	0.306808	0.076932	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Protein C11orf58 OS=Homo sapiens GN=C11orf58 PE=4 SV=1	E9PQA1_HUMAN	E9PQA1_HUMAN	Protein C11orf58 OS=Homo sapiens GN=C11orf58 PE=4 SV=1	100.000000	0.007080	9610.100000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.42242.42242.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42242"	LGSSNWEAADLGNEER	L[+28]GSSNWEAADLGNEER	D	K	99.700000	69.600000	49.500000	62.800000	Dimethyl (+28)	1774.810000	2.000000	-0.006800	-3.800000	22.000000	37.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	C1QBP_HUMAN	C1QBP_HUMAN	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	100.000000	0.009220	31344.600000	2.000000	3.000000	7.000000	Spectrum63146 scans:37113,	LHTDGDKAFVDFLSDEIKEER	L[+28]HTDGDKAFVDFLSDEIKEER	S	K	99.700000	63.800000	55.200000	55.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2573.330000	4.000000	0.010000	4.100000	74.000000	94.000000	11.771600	9.544533	0.805900	107.725350	79.140600	0.728200	NaN	NaN	NaN	14.794018	13.847374	1.401322	125.316679	107.462285	1.088572	NaN	NaN	NaN	70.055348	60.654830	0.000000	0.000000	0.000000	0.000000	0.305996	0.076880	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	C1QBP_HUMAN	C1QBP_HUMAN	Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Homo sapiens GN=C1QBP PE=1 SV=1	100.000000	0.009220	31344.600000	2.000000	3.000000	7.000000	Spectrum63123 scans:37087,	LHTDGDKAFVDFLSDEIKEER	L[+28]HTDGDKAFVDFLSDEIKEER	S	K	99.700000	55.300000	55.700000	46.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2561.360000	4.000000	0.001400	0.560000	74.000000	94.000000	11.771600	9.544533	0.805900	107.725350	79.140600	0.728200	NaN	NaN	NaN	14.794018	13.847374	1.401322	125.316679	107.462285	1.088572	NaN	NaN	NaN	70.055348	60.654830	0.000000	0.000000	0.000000	0.000000	0.305592	0.076855	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglucomutase-2 OS=Homo sapiens GN=PGM2 PE=1 SV=4	PGM2_HUMAN	PGM2_HUMAN	Phosphoglucomutase-2 OS=Homo sapiens GN=PGM2 PE=1 SV=4	100.000000	0.009220	68267.700000	2.000000	4.000000	7.000000	Spectrum38458 scans:8251,	LIAEGNKEELR	NaN	R	K	98.900000	32.900000	50.600000	16.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1344.770000	3.000000	0.000530	0.390000	38.000000	48.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2	SAE2_HUMAN	SAE2_HUMAN	SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2	100.000000	0.013400	71207.200000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.27945.27945.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27945"	LIDLDTIDVSNLNR	L[+28]IDLDTIDVSNLNR	D	Q	99.700000	91.800000	56.300000	48.000000	Dimethyl (+28)	1627.880000	2.000000	-0.001200	-0.710000	46.000000	59.000000	0.752533	0.548133	0.739700	0.759500	0.613400	0.822550	NaN	NaN	NaN	0.945750	0.795241	1.286211	0.883525	0.832915	1.229614	NaN	NaN	NaN	0.914637	0.814078	0.021647	0.014728	0.023292	0.014809	0.304787	0.076804	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.015800	72316.700000	7.000000	10.000000	12.000000	Spectrum50625 scans:22265,	LIGDAAKNQLTSNPENTVFDAKR	L[+28]IGDAAKNQLTSNPENTVFDAKR	R	L	99.700000	61.600000	55.700000	51.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2599.450000	4.000000	-0.000300	-0.110000	75.000000	97.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens GN=SNRPN PE=1 SV=1	tr|J3QLE5|J3QLE5_HUMAN	J3QLE5_HUMAN	Small nuclear ribonucleoprotein-associated protein N (Fragment) OS=Homo sapiens GN=SNRPN PE=4 SV=1	100.000000	0.002630	0.000000	1.000000	2.000000	2.000000	Spectrum20805 scans:18275,	LILCDCDEFR	L[+28]ILC[+57]DC[+57]DEFR	N	K	99.700000	74.800000	45.900000	57.400000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6) (+6)	1373.640000	2.000000	-0.001100	-0.820000	0.000000	0.000000	NaN	0.452167	0.442167	0.128100	0.877650	400.300200	NaN	NaN	NaN	NaN	0.656011	0.768852	0.149018	1.191731	598.400777	NaN	NaN	NaN	0.149018	0.923871	NaN	0.179651	NaN	0.223757	1.000000	0.076753	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens GN=SNRPN PE=1 SV=1	tr|J3QLE5|J3QLE5_HUMAN	J3QLE5_HUMAN	Small nuclear ribonucleoprotein-associated protein N (Fragment) OS=Homo sapiens GN=SNRPN PE=4 SV=1	100.000000	0.002630	0.000000	1.000000	2.000000	2.000000	Spectrum20801 scans:18260,	LILCDCDEFR	L[+28]ILC[+57]DC[+57]DEFR	N	K	99.700000	83.100000	44.400000	70.000000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57)	1367.620000	2.000000	-0.001400	-1.000000	0.000000	0.000000	NaN	0.452167	0.442167	0.128100	0.877650	400.300200	NaN	NaN	NaN	NaN	0.656011	0.768852	0.149018	1.191731	598.400777	NaN	NaN	NaN	0.149018	0.923871	NaN	0.179651	NaN	1.000000	1.000000	0.076575	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leucine-rich repeat-containing protein 20 OS=Homo sapiens GN=LRRC20 PE=2 SV=1	tr|X6RK58|X6RK58_HUMAN	X6RK58_HUMAN	Leucine-rich repeat-containing protein 20 (Fragment) OS=Homo sapiens GN=LRRC20 PE=4 SV=1	95.700000	0.001320	0.000000	1.000000	1.000000	1.000000	Spectrum42092 scans:12459,	LKAIDLSR	NaN	H	N	99.000000	33.100000	46.300000	16.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	988.640000	3.000000	-0.001600	-1.700000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.048600	67803.800000	7.000000	14.000000	21.000000	Nsco_Tails_biological_replicate_3_fraction6A.15933.15933.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15933"	LKALTSELANAR	L[+28]KALTSELANAR	H	D	98.500000	66.600000	54.600000	49.600000	Dimethyl (+28), Dimethyl (+28)	1341.800000	3.000000	0.001200	0.910000	522.000000	533.000000	17.403767	6.663267	0.518600	9.665600	1.560200	39.206500	NaN	NaN	NaN	21.872272	9.667183	0.901756	11.243973	2.118542	58.609014	NaN	NaN	NaN	16.558122	5.892862	0.000000	0.362657	0.000000	1.000000	0.302792	0.076423	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens GN=EIF4G1 PE=1 SV=4	sp|Q04637|IF4G1_HUMAN	IF4G1_HUMAN	Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens GN=EIF4G1 PE=1 SV=4	100.000000	0.003950	175476.200000	2.000000	2.000000	3.000000	Spectrum16400 scans:6325,	LKEELEEAR	L[+28]KEELEEAR	R	D	99.700000	51.600000	49.800000	14.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1189.670000	3.000000	0.000065	0.055000	880.000000	888.000000	7.461667	2.862533	0.699033	1.120550	NaN	0.406100	NaN	NaN	NaN	9.377487	4.153013	1.215499	1.303534	NaN	0.607071	NaN	NaN	NaN	5.340510	4.153013	0.412069	NaN	1.000000	NaN	0.302397	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3	ARP3_HUMAN	ARP3_HUMAN	Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3	100.000000	0.002630	47353.800000	1.000000	2.000000	2.000000	Spectrum44948 scans:15757,	LKLSEELSGGR	L[+28]KLSEELSGGR	R	L	99.500000	38.300000	50.000000	23.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1261.740000	3.000000	0.000750	0.590000	347.000000	357.000000	4.942833	1.727033	0.351933	7.120750	1.116650	0.468500	NaN	NaN	NaN	6.211931	2.505610	0.611952	8.283554	1.516260	0.700351	NaN	NaN	NaN	7.247742	2.010935	0.090371	0.153555	0.142864	0.358570	0.302002	0.076247	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3	ARP3_HUMAN	ARP3_HUMAN	Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3	100.000000	0.002630	47353.800000	1.000000	2.000000	2.000000	Spectrum44938 scans:15746,	LKLSEELSGGR	L[+28]KLSEELSGGR	R	L	99.700000	41.700000	49.100000	25.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1253.760000	3.000000	0.000620	0.490000	347.000000	357.000000	4.942833	1.727033	0.351933	7.120750	1.116650	0.468500	NaN	NaN	NaN	6.211931	2.505610	0.611952	8.283554	1.516260	0.700351	NaN	NaN	NaN	7.247742	2.010935	0.090371	0.153555	0.192266	0.524961	0.301608	0.076222	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	ADA_HUMAN	ADA_HUMAN	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	100.000000	0.007000	40747.100000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.25137.25137.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25137"	LKNDQANYSLNTDD	L[+28]KNDQANYSLNTDD	R	P	99.000000	53.100000	50.900000	47.300000	Dimethyl (+28), Dimethyl (+28)	1665.780000	2.000000	-0.006400	-3.800000	283.000000	296.000000	NaN	NaN	0.466333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.810873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Short of Cold shock domain-containing protein E1 OS=Homo sapiens GN=CSDE1	sp|O75534|CSDE1_HUMAN	CSDE1_HUMAN	Cold shock domain-containing protein E1 OS=Homo sapiens GN=CSDE1 PE=1 SV=2	100.000000	0.003950	88867.000000	3.000000	3.000000	3.000000	Spectrum19171 scans:11993,	LKNITLDDASAPR	L[+28]KNITLDDASAPR	R	L	99.700000	54.300000	51.400000	30.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1486.850000	3.000000	-0.000700	-0.470000	757.000000	769.000000	1.118200	0.488000	0.710900	NaN	NaN	26.743750	NaN	NaN	NaN	1.405304	0.707999	1.236133	NaN	NaN	39.978698	NaN	NaN	NaN	1.405304	0.707999	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Platelet-activating factor acetylhydrolase IB subunit gamma OS=Homo sapiens GN=PAFAH1B3 PE=1 SV=1	PA1B3_HUMAN	PA1B3_HUMAN	Platelet-activating factor acetylhydrolase IB subunit gamma OS=Homo sapiens GN=PAFAH1B3 PE=1 SV=1	100.000000	0.010500	25715.600000	4.000000	7.000000	8.000000	Spectrum56666 scans:29217,	LLAQDQGQGAPLLEPAP	L[+28]LAQDQGQGAPLLEPAP	R	-	99.700000	78.900000	52.500000	64.100000	Dimethyl (+28)	1744.930000	2.000000	-0.002400	-1.400000	215.000000	231.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	PDC6I_HUMAN	PDC6I_HUMAN	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	100.000000	0.006590	96007.400000	2.000000	5.000000	5.000000	Spectrum46242 scans:17224,	LLDEEEATDNDLR	L[+28]LDEEEATDNDLR	R	A	98.900000	50.600000	48.100000	45.300000	Dimethyl (+28), Label:13C(6) (+6)	1565.750000	2.000000	-0.001200	-0.760000	457.000000	469.000000	0.743633	0.707033	1.000933	0.084650	2.810600	38.068550	NaN	NaN	NaN	0.934565	1.025776	1.740451	0.098473	3.816417	56.907915	NaN	NaN	NaN	0.516519	2.421096	0.433167	0.332840	1.000000	1.000000	0.299267	0.076096	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	PDC6I_HUMAN	PDC6I_HUMAN	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	100.000000	0.006590	96007.400000	2.000000	5.000000	5.000000	Spectrum46149 scans:17112,	LLDEEEATDNDLR	L[+28]LDEEEATDNDLR	R	A	99.700000	97.900000	47.100000	84.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1569.740000	2.000000	-0.003300	-2.100000	457.000000	469.000000	0.743633	0.707033	1.000933	0.084650	2.810600	38.068550	NaN	NaN	NaN	0.934565	1.025776	1.740451	0.098473	3.816417	56.907915	NaN	NaN	NaN	0.516519	2.421096	0.433167	0.332840	1.000000	0.686248	0.298880	0.076071	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	PDC6I_HUMAN	PDC6I_HUMAN	Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1	100.000000	0.006590	96007.400000	2.000000	5.000000	5.000000	Spectrum46151 scans:17114,	LLDEEEATDNDLR	L[+28]LDEEEATDNDLR	R	A	99.700000	111.000000	46.900000	87.100000	Dimethyl (+28)	1559.730000	2.000000	-0.001300	-0.850000	457.000000	469.000000	0.743633	0.707033	1.000933	0.084650	2.810600	38.068550	NaN	NaN	NaN	0.934565	1.025776	1.740451	0.098473	3.816417	56.907915	NaN	NaN	NaN	0.516519	2.421096	0.433167	0.332840	0.510908	0.685840	0.298495	0.076046	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=2 SV=1	SYSC_HUMAN	SYSC_HUMAN	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3	100.000000	0.009220	58760.600000	3.000000	7.000000	7.000000	Spectrum56449 scans:28937,	LLIDEAILKCDAER	L[+28]LIDEAILKC[+57]DAER	R	I	99.700000	51.200000	52.600000	42.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1731.960000	3.000000	0.000560	0.320000	108.000000	121.000000	7.768633	3.699000	0.367733	3.158650	15.363150	2.582050	NaN	NaN	NaN	9.763269	5.366573	0.639425	3.674451	20.861090	3.859855	NaN	NaN	NaN	6.718860	13.113832	0.270844	0.186438	0.654932	0.218931	0.298110	0.075996	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform 2 of Phosphotriesterase-related protein OS=Homo sapiens GN=PTER	sp|Q96BW5-2|PTER_HUMAN	PTER_HUMAN	Isoform 2 of Phosphotriesterase-related protein OS=Homo sapiens GN=PTER	88.500000	0.002310	33417.900000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.11867.11867.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11867"	LLVEEGCEDR	L[+28]LVEEGC[+57]EDR	R	I	99.200000	54.200000	50.600000	50.300000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1252.610000	2.000000	-0.001200	-0.970000	236.000000	245.000000	3.109000	2.748500	1.519067	3.110100	57.606300	2.001500	NaN	NaN	NaN	3.907251	3.987571	2.641396	3.617973	78.221604	2.992002	NaN	NaN	NaN	3.762612	41.104587	0.024460	0.258445	0.239092	0.303384	0.297726	0.075972	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.034200	38850.300000	7.000000	16.000000	26.000000	Spectrum61201 scans:34792,	LLVVDPETDEQLQKLGVQVR	L[+28]LVVDPETDEQLQKLGVQVR	R	E	99.700000	64.800000	54.600000	60.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2352.340000	3.000000	-0.003100	-1.300000	88.000000	107.000000	NaN	16.239100	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.559967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.559967	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.034200	38850.300000	7.000000	16.000000	26.000000	Spectrum61308 scans:34920,	LLVVDPETDEQLQKLGVQVR	L[+28]LVVDPETDEQLQKLGVQVR	R	E	99.700000	70.000000	54.000000	64.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2344.360000	3.000000	-0.004000	-1.700000	88.000000	107.000000	NaN	16.239100	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.559967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.559967	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.039300	38850.300000	5.000000	11.000000	17.000000	Nsco_Tails_biological_replicate_3_fraction6A.34905.34905.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34905"	LLVVDPETDEQLQKLGVQVR	L[+28]LVVDPETDEQLQKLGVQVR	R	E	99.700000	98.500000	60.000000	98.500000	Dimethyl (+28), Dimethyl (+28)	2334.320000	3.000000	-0.001100	-0.490000	88.000000	107.000000	NaN	16.239100	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.559967	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.559967	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum73124 scans:50353,	LMEPIYLVEIQCPEQVVGGIY	L[+28]M[+16]EPIYLVEIQC[+57]PEQVVGGIY	R	G	99.700000	48.200000	53.700000	29.500000	Dimethyl (+28), Oxidation (+16), Carbamidomethyl (+57)	2493.250000	3.000000	-0.002300	-0.920000	740.000000	760.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Plastin-1 OS=Homo sapiens GN=PLS1 PE=1 SV=2	PLSI_HUMAN	PLSI_HUMAN	Plastin-1 OS=Homo sapiens GN=PLS1 PE=1 SV=2	15.800000	0.000000	70239.200000	0.000000	0.000000	0.000000	Spectrum57105 scans:29747,	LMKLSPEELLLR	L[+28]MKLSPEELLLR	E	W	99.700000	83.200000	49.200000	62.200000	Dimethyl (+28), Oxidation (+16), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1522.940000	3.000000	0.002800	1.800000	263.000000	274.000000	296.338233	126.944033	0.692967	4.130300	1.635450	1.465900	NaN	NaN	NaN	372.424574	184.172599	1.204950	4.804770	2.220721	2.191345	NaN	NaN	NaN	188.614672	93.196660	0.214853	0.360882	1.000000	1.000000	0.294692	0.075847	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Actin-related protein 2 OS=Homo sapiens GN=ACTR2 PE=1 SV=1	ARP2_HUMAN	ARP2_HUMAN	Actin-related protein 2 OS=Homo sapiens GN=ACTR2 PE=1 SV=1	99.900000	0.004480	44743.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.14642.14642.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14642"	LMVGDEASELR	L[+28]MVGDEASELR	D	S	99.400000	54.200000	51.400000	42.400000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1272.620000	2.000000	-0.001700	-1.300000	55.000000	65.000000	0.803367	0.678233	0.721833	0.727600	0.481650	0.665800	NaN	NaN	NaN	1.009635	0.983993	1.255144	0.846416	0.654016	0.995291	NaN	NaN	NaN	0.928025	0.819004	0.055840	0.126553	0.739562	0.421844	0.294317	0.075822	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Proteasome activator complex subunit 2 OS=Homo sapiens GN=PSME2 PE=1 SV=4	PSME2_HUMAN	PSME2_HUMAN	Proteasome activator complex subunit 2 OS=Homo sapiens GN=PSME2 PE=1 SV=4	100.000000	0.017300	27384.200000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.38289.38289.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38289"	LNQLLQEDSLNVADLTSLR	L[+28]NQLLQEDSLNVADLTSLR	Y	A	99.700000	102.000000	59.000000	93.800000	Dimethyl (+28)	2169.160000	2.000000	-0.006200	-2.900000	43.000000	61.000000	0.719800	0.294800	0.409600	67.052750	NaN	0.398600	NaN	NaN	NaN	0.904612	0.427701	0.712224	78.002327	NaN	0.595859	NaN	NaN	NaN	39.453469	0.427701	0.442567	NaN	1.000000	NaN	0.293570	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4	sp|Q9UI10|EI2BD_HUMAN	EI2BD_HUMAN	Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2	100.000000	0.003950	57538.900000	2.000000	3.000000	3.000000	Spectrum13097 scans:48842,	LPEYPQVDDLLLR	NaN	R	R	99.500000	40.500000	52.000000	22.200000	Dimethyl (+28)	1597.870000	3.000000	0.001100	0.670000	144.000000	156.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	PLPP_HUMAN	PLPP_HUMAN	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	100.000000	0.011900	31680.800000	6.000000	9.000000	9.000000	Spectrum65281 scans:39491,	LPGPPDAPGAVFVLGGEGLR	L[+28]PGPPDAPGAVFVLGGEGLR	R	A	99.700000	52.000000	53.500000	36.500000	Dimethyl (+28)	1946.060000	3.000000	-0.002000	-1.000000	100.000000	119.000000	NaN	21.749450	NaN	NaN	0.073800	NaN	NaN	NaN	NaN	NaN	31.554478	NaN	NaN	0.100210	NaN	NaN	NaN	NaN	NaN	15.827344	NaN	0.493621	NaN	1.000000	NaN	0.075673	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	PLPP_HUMAN	PLPP_HUMAN	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	100.000000	0.011900	31680.800000	6.000000	9.000000	9.000000	Spectrum65265 scans:39473,	LPGPPDAPGAVFVLGGEGLR	L[+28]PGPPDAPGAVFVLGGEGLR	R	A	99.700000	55.600000	53.600000	38.500000	Dimethyl (+28), Label:13C(6) (+6)	1952.080000	3.000000	-0.002100	-1.100000	100.000000	119.000000	NaN	21.749450	NaN	NaN	0.073800	NaN	NaN	NaN	NaN	NaN	31.554478	NaN	NaN	0.100210	NaN	NaN	NaN	NaN	NaN	15.827344	NaN	0.493621	NaN	1.000000	NaN	0.075649	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.011500	50123.200000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.31343.31343.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31343"	LPLQDVYKIGGIGTVPVGR	L[+28]PLQDVYKIGGIGTVPVGR	R	V	99.600000	84.700000	57.900000	79.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2055.220000	3.000000	-0.003400	-1.600000	248.000000	266.000000	205.658267	76.134067	0.367800	NaN	6.210500	0.423750	NaN	NaN	NaN	258.462067	110.456621	0.639541	NaN	8.433023	0.633455	NaN	NaN	NaN	258.462067	59.444822	NaN	0.053989	NaN	0.532219	1.000000	0.075574	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.031600	50123.200000	9.000000	17.000000	24.000000	Spectrum60385 scans:33737,	LPLQDVYKIGGIGTVPVGR	L[+28]PLQDVYKIGGIGTVPVGR	R	V	99.700000	44.500000	51.400000	40.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2047.240000	3.000000	-0.001200	-0.610000	248.000000	266.000000	205.658267	76.134067	0.367800	NaN	6.210500	0.423750	NaN	NaN	NaN	258.462067	110.456621	0.639541	NaN	8.433023	0.633455	NaN	NaN	NaN	258.462067	59.444822	NaN	0.053989	NaN	0.530711	1.000000	0.075550	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.092200	90567.200000	4.000000	7.000000	7.000000	Nsco_Tails_biological_replicate_3_fraction2A.9777.9777.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9777"	LQAALDDEEAGGR	L[+28]QAALDDEEAGGR	R	P	99.700000	100.000000	51.400000	80.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1381.670000	2.000000	-0.002000	-1.500000	38.000000	50.000000	0.243633	1.716433	5.884333	NaN	NaN	0.069700	NaN	NaN	NaN	0.306187	2.490231	10.231844	NaN	NaN	0.104193	NaN	NaN	NaN	0.306187	2.490231	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.025000	90567.200000	8.000000	16.000000	19.000000	Spectrum18104 scans:9765,	LQAALDDEEAGGR	L[+28]QAALDDEEAGGR	R	P	99.700000	91.500000	47.600000	74.500000	Dimethyl (+28)	1371.660000	2.000000	0.000038	0.028000	38.000000	50.000000	0.243633	1.716433	5.884333	NaN	NaN	0.069700	NaN	NaN	NaN	0.306187	2.490231	10.231844	NaN	NaN	0.104193	NaN	NaN	NaN	0.306187	2.490231	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.025000	90567.200000	8.000000	16.000000	19.000000	Spectrum20468 scans:16270,	LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR	L[+28]QAALDDEEAGGRPAM[+16]EPGNGSLDLGGDSAGR	R	S	99.300000	36.600000	49.900000	32.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10), Oxidation (+16), Label:13C(6)15N(4) (+10)	3189.470000	3.000000	-0.002000	-0.640000	38.000000	69.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.025000	90567.200000	8.000000	16.000000	19.000000	Spectrum20465 scans:16264,	LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR	L[+28]QAALDDEEAGGRPAM[+16]EPGNGSLDLGGDSAGR	R	S	99.500000	39.300000	49.300000	37.400000	Dimethyl (+28), Oxidation (+16)	3169.460000	3.000000	-0.003700	-1.200000	38.000000	69.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3	UBP14_HUMAN	UBP14_HUMAN	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3	100.000000	0.006590	56052.300000	4.000000	5.000000	5.000000	Spectrum42389 scans:12790,	LQEEITKQSPTLQR	L[+28]QEEITKQSPTLQR	R	N	98.600000	57.800000	52.200000	33.300000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1736.000000	2.000000	-0.003800	-2.200000	294.000000	307.000000	NaN	NaN	NaN	NaN	0.529050	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.718379	NaN	NaN	NaN	NaN	NaN	0.718379	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoleucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=IARS PE=1 SV=2	SYIC_HUMAN	SYIC_HUMAN	Isoleucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=IARS PE=1 SV=2	100.000000	0.002630	144483.800000	2.000000	2.000000	2.000000	Spectrum11456 scans:40851,	LQKEEEIEFLYNENTVR	NaN	R	E	99.300000	40.400000	53.800000	21.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2227.150000	3.000000	-0.001600	-0.710000	670.000000	686.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	RS3A_HUMAN	RS3A_HUMAN	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	100.000000	0.004480	29927.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.12344.12344.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12344"	LQNDEVAFR	L[+28]QNDEVAFR	D	K	99.000000	50.900000	51.500000	37.100000	Dimethyl (+28)	1118.570000	2.000000	-0.000480	-0.430000	74.000000	82.000000	0.489533	5.866000	13.150200	0.870550	0.506150	0.582750	NaN	NaN	NaN	0.615223	8.510494	22.865936	1.012709	0.687284	0.871141	NaN	NaN	NaN	0.813966	4.598889	0.152458	0.448700	0.169127	0.462701	0.284893	0.075230	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1	sp|Q14980|NUMA1_HUMAN	NUMA1_HUMAN	Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1 PE=1 SV=2	100.000000	0.007900	238241.600000	6.000000	6.000000	6.000000	Spectrum7845 scans:29746,	LQQLGEAHQAETEVLR	L[+28]QQLGEAHQAETEVLR	R	R	99.700000	60.700000	52.900000	46.400000	Dimethyl (+28), Label:13C(6) (+6)	1854.990000	3.000000	-0.003300	-1.800000	771.000000	786.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.025000	90567.200000	8.000000	16.000000	19.000000	Spectrum11620 scans:41517,	LSASSLTMESF	L[+28]SASSLTMESF	R	A	98.900000	47.800000	45.500000	35.900000	Dimethyl (+28), Oxidation (+16)	1215.570000	2.000000	-0.000580	-0.470000	306.000000	316.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 2 of Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3	sp|P25788-2|PSA3_HUMAN	PSA3_HUMAN	Isoform 2 of Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3	100.000000	0.023600	27629.700000	2.000000	4.000000	10.000000	NSco_TAILS_20150124_Protein_complex_100Kda.32750.32750.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32750"	LSASTFSPDGR	L[+28]SASTFSPDGR	D	V	99.500000	58.200000	50.700000	55.700000	Dimethyl (+28)	1164.570000	2.000000	-0.003200	-2.700000	10.000000	20.000000	0.552467	1.035500	1.910600	0.705100	0.555250	0.788150	0.934957	2.362029	1.769786	0.694315	1.502321	3.322205	0.820241	0.753955	1.178190	0.625327	1.005966	0.848086	0.713294	1.087414	0.006339	0.038525	0.018345	0.675165	0.019235	0.005123	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3	sp|P25788|PSA3_HUMAN	PSA3_HUMAN	Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2	100.000000	0.037600	28415.700000	2.000000	5.000000	15.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.15779.15779.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15779"	LSASTFSPDGR	L[+28]SASTFSPDGR	D	V	99.700000	62.200000	51.400000	53.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1174.590000	2.000000	0.000130	0.110000	10.000000	20.000000	0.552467	1.035500	1.910600	0.705100	0.555250	0.788150	0.934957	2.362029	1.769786	0.694315	1.502321	3.322205	0.820241	0.753955	1.178190	0.625327	1.005966	0.848086	0.713294	1.087414	0.006339	0.038525	0.018330	0.081613	0.019188	0.005111	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	sp|P32119|PRDX2_HUMAN	PRDX2_HUMAN	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	100.000000	0.013200	21874.400000	3.000000	6.000000	10.000000	Spectrum52573 scans:24529,	LSEDYGVLKTDEGIAYR	L[+28]SEDYGVLKTDEGIAYR	R	G	99.600000	42.700000	53.000000	37.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2002.040000	3.000000	-0.001200	-0.580000	111.000000	127.000000	7.973167	4.447600	1.957467	4.713850	0.299000	1.560400	NaN	NaN	NaN	10.020318	6.452655	3.403698	5.483612	0.406002	2.332611	NaN	NaN	NaN	7.751965	3.429328	0.180682	0.459997	0.522036	0.973879	0.281085	0.074938	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	sp|P32119|PRDX2_HUMAN	PRDX2_HUMAN	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	100.000000	0.013200	21874.400000	3.000000	6.000000	10.000000	Spectrum52563 scans:24518,	LSEDYGVLKTDEGIAYR	L[+28]SEDYGVLKTDEGIAYR	R	G	99.700000	50.400000	53.500000	45.100000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1994.060000	3.000000	-0.003500	-1.700000	111.000000	127.000000	7.973167	4.447600	1.957467	4.713850	0.299000	1.560400	NaN	NaN	NaN	10.020318	6.452655	3.403698	5.483612	0.406002	2.332611	NaN	NaN	NaN	7.751965	3.429328	0.180682	0.459997	0.192380	1.000000	0.280744	0.074889	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform 2 of Endoplasmic reticulum aminopeptidase 1 OS=Homo sapiens GN=ERAP1	sp|Q9NZ08|ERAP1_HUMAN	ERAP1_HUMAN	Endoplasmic reticulum aminopeptidase 1 OS=Homo sapiens GN=ERAP1 PE=1 SV=3	100.000000	0.004630	107219.900000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction6A.25038.25038.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25038"	LSEEPLQVLEHPR	L[+28]SEEPLQVLEHPR	R	Q	99.700000	102.000000	56.300000	86.000000	Dimethyl (+28), Label:13C(6) (+6)	1579.870000	3.000000	0.002100	1.300000	115.000000	127.000000	1.146100	0.702367	0.805033	6.328600	7.530600	1.046000	NaN	NaN	NaN	1.440367	1.019006	1.399815	7.362047	10.225541	1.563645	NaN	NaN	NaN	4.401207	5.622274	0.377001	0.435351	0.855027	1.000000	0.280065	0.074865	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	EFHD2_HUMAN	EFHD2_HUMAN	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	100.000000	0.014500	26680.400000	5.000000	8.000000	11.000000	Spectrum43959 scans:14616,	LSEIDVSSEGVKGAK	L[+28]SEIDVSSEGVKGAK	R	S	99.700000	57.800000	52.000000	46.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1617.920000	3.000000	0.002400	1.500000	177.000000	191.000000	0.393833	NaN	NaN	0.675750	NaN	NaN	NaN	NaN	NaN	0.494952	NaN	NaN	0.786099	NaN	NaN	NaN	NaN	NaN	0.640525	NaN	0.142269	NaN	0.187851	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transcription elongation factor B polypeptide 1 (Fragment) OS=Homo sapiens GN=TCEB1 PE=4 SV=1	ELOC_HUMAN	ELOC_HUMAN	Transcription elongation factor B polypeptide 1 OS=Homo sapiens GN=TCEB1 PE=1 SV=1	96.100000	0.001320	12455.400000	1.000000	1.000000	1.000000	Spectrum55091 scans:27346,	LSGPGQFAENETNEVNFR	L[+28]SGPGQFAENETNEVNFR	M	E	99.100000	54.800000	48.900000	49.600000	Dimethyl (+28)	2035.960000	2.000000	0.000700	0.340000	46.000000	63.000000	1.049433	NaN	NaN	1.647150	0.812900	NaN	NaN	NaN	NaN	1.318881	NaN	NaN	1.916126	1.103809	NaN	NaN	NaN	NaN	1.617503	1.103809	0.116224	NaN	0.153345	NaN	0.279051	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=2 SV=1	B4DXP5_HUMAN	B4DXP5_HUMAN	Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=2 SV=1	99.900000	0.001320	33908.800000	1.000000	1.000000	1.000000	Spectrum34389 scans:3571,	LSSETGGMGSS	L[+28]SSETGGM[+16]GSS	R	-	98.600000	41.200000	39.300000	36.700000	Dimethyl (+28), Oxidation (+16)	1055.440000	2.000000	0.000360	0.340000	312.000000	322.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Methylosome subunit pICln OS=Homo sapiens GN=CLNS1A PE=1 SV=1	ICLN_HUMAN	ICLN_HUMAN	Methylosome subunit pICln OS=Homo sapiens GN=CLNS1A PE=1 SV=1	100.000000	0.043500	26197.400000	3.000000	7.000000	33.000000	Spectrum73063 scans:50190,	LSWLDGSGLGF	L[+28]SWLDGSGLGF	R	S	98.900000	52.200000	48.200000	41.600000	Dimethyl (+28)	1178.600000	2.000000	0.000018	0.016000	44.000000	54.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	FKBP4_HUMAN	FKBP4_HUMAN	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	100.000000	0.015800	51787.900000	5.000000	9.000000	12.000000	Spectrum28790 scans:11701,	LTEEEDGGIIR	L[+28]TEEEDGGIIR	D	R	99.200000	59.500000	49.100000	38.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1268.650000	2.000000	0.000590	0.460000	142.000000	152.000000	0.586767	0.323133	0.552433	0.638800	0.510050	0.798150	3.383043	1.832886	0.874043	0.737422	0.468807	0.960587	0.743115	0.692579	1.193139	2.262678	0.780609	0.418844	1.247738	0.647332	0.133161	0.019943	0.266476	0.520306	0.018912	0.005096	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4	sp|Q15393|SF3B3_HUMAN	SF3B3_HUMAN	Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4	100.000000	0.005270	135561.400000	2.000000	3.000000	4.000000	Spectrum20707 scans:17684,	LTISSPLEAH	L[+28]TISSPLEAH	R	K	99.100000	54.800000	49.100000	38.900000	Dimethyl (+28)	1094.600000	2.000000	0.000360	0.330000	152.000000	161.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	ADA_HUMAN	ADA_HUMAN	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	100.000000	0.017300	40747.100000	3.000000	4.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.47594.47594.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47594"	LTPDEVVALVGQGLQEGER	L[+28]TPDEVVALVGQGLQEGER	D	D	99.700000	105.000000	58.100000	97.500000	Dimethyl (+28)	2037.070000	2.000000	-0.000300	-0.150000	124.000000	142.000000	0.754233	0.713833	0.919700	25.361950	28.515150	1.103500	NaN	NaN	NaN	0.947887	1.035642	1.599200	29.503504	38.719737	1.649600	NaN	NaN	NaN	15.225695	19.877689	0.439835	0.434303	1.000000	0.779231	0.276715	0.074696	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	ADA_HUMAN	ADA_HUMAN	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	100.000000	0.009440	40747.100000	4.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64802.64802.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64802"	LTPDEVVALVGQGLQEGER	L[+28]TPDEVVALVGQGLQEGER	D	D	99.100000	66.700000	58.200000	47.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2047.080000	3.000000	0.000250	0.120000	124.000000	142.000000	0.754233	0.713833	0.919700	25.361950	28.515150	1.103500	NaN	NaN	NaN	0.947887	1.035642	1.599200	29.503504	38.719737	1.649600	NaN	NaN	NaN	15.225695	19.877689	0.439835	0.434303	1.000000	1.000000	0.274743	0.074552	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	SF3B1_HUMAN	SF3B1_HUMAN	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	100.000000	0.013200	145817.300000	5.000000	8.000000	10.000000	Spectrum17354 scans:8119,	LTPILKNR	NaN	R	H	99.000000	28.000000	44.800000	14.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1027.690000	3.000000	-0.000160	-0.160000	1020.000000	1027.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	SF3B1_HUMAN	SF3B1_HUMAN	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	100.000000	0.013200	145817.300000	5.000000	8.000000	10.000000	Spectrum17362 scans:8132,	LTPILKNR	NaN	R	H	99.000000	30.200000	42.600000	20.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1019.710000	3.000000	-0.000025	-0.024000	1020.000000	1027.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.021100	69396.600000	5.000000	15.000000	16.000000	Spectrum61373 scans:34994,	LTPKIGFPWSEIR	L[+28]TPKIGFPWSEIR	K	N	99.700000	69.800000	51.600000	56.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1616.940000	3.000000	0.001300	0.830000	234.000000	246.000000	23.763600	12.765433	0.535533	NaN	0.041900	NaN	NaN	NaN	NaN	29.865025	18.520311	0.931200	NaN	0.056895	NaN	NaN	NaN	NaN	29.865025	9.288603	NaN	0.496378	NaN	1.000000	1.000000	0.074384	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2	RL18A_HUMAN	RL18A_HUMAN	60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2	100.000000	0.002500	20744.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.12491.12491.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12491"	LTTAGAVTQCYR	L[+28]TTAGAVTQC[+57]YR	D	D	99.600000	66.000000	52.500000	51.300000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1377.690000	2.000000	-0.009700	-7.000000	100.000000	111.000000	NaN	NaN	NaN	1.277700	0.539450	0.312100	NaN	NaN	NaN	NaN	NaN	NaN	1.486346	0.732501	0.466552	NaN	NaN	NaN	1.486346	0.732501	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleoside diphosphate kinase OS=Homo sapiens GN=NME1-NME2 PE=2 SV=1	sp|P22392-2|NDKB_HUMAN	NDKB_HUMAN	Isoform 3 of Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2	100.000000	0.048700	30119.300000	6.000000	14.000000	37.000000	Spectrum50531 scans:22160,	LVAMKFLR	NaN	R	A	99.000000	29.000000	44.700000	16.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1042.700000	3.000000	-0.000290	-0.280000	150.000000	157.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3	sp|P61086-3|UBE2K_HUMAN	UBE2K_HUMAN	Isoform 3 of Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K	99.900000	0.002880	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.21883.21883.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21883"	LVDENFTELR	L[+28]VDENFTELR	D	G	98.600000	52.500000	53.200000	44.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1272.660000	2.000000	-0.000190	-0.150000	0.000000	0.000000	4.424400	0.552800	0.434667	803.613550	7.168350	0.009800	NaN	NaN	0.506343	5.560387	0.802012	0.755811	934.841995	9.733655	0.014650	NaN	NaN	0.242641	470.201191	5.267833	0.176936	0.447663	0.887237	0.454740	0.271200	0.074240	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.034200	38850.300000	7.000000	16.000000	26.000000	Spectrum46535 scans:17575,	LVEPGSPAEKAGL	L[+28]VEPGSPAEKAGL	R	L	98.500000	53.300000	50.500000	35.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1330.760000	2.000000	-0.002000	-1.500000	41.000000	53.000000	0.751933	0.140700	1.192233	2.359450	0.213950	0.090700	NaN	NaN	NaN	0.944996	0.204130	2.073089	2.744743	0.290515	0.135586	NaN	NaN	NaN	1.844870	0.247323	0.288909	0.110070	0.298545	0.111777	0.270882	0.074217	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.034200	38850.300000	7.000000	16.000000	26.000000	Spectrum46522 scans:17559,	LVEPGSPAEKAGL	L[+28]VEPGSPAEKAGL	R	L	99.500000	67.400000	50.400000	55.400000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1326.770000	2.000000	-0.002400	-1.800000	41.000000	53.000000	0.751933	0.140700	1.192233	2.359450	0.213950	0.090700	NaN	NaN	NaN	0.944996	0.204130	2.073089	2.744743	0.290515	0.135586	NaN	NaN	NaN	1.844870	0.247323	0.288909	0.110070	0.694261	0.111744	0.270565	0.074193	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.034200	38850.300000	7.000000	16.000000	26.000000	Spectrum47983 scans:19238,	LVEPGSPAEKAGLLAGDR	L[+28]VEPGSPAEKAGLLAGDR	R	L	99.000000	36.100000	53.100000	25.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1853.040000	3.000000	0.000270	0.140000	41.000000	58.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.034200	38850.300000	7.000000	16.000000	26.000000	Spectrum48048 scans:19313,	LVEPGSPAEKAGLLAGDR	L[+28]VEPGSPAEKAGLLAGDR	R	L	99.700000	54.100000	52.800000	36.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1845.060000	3.000000	-0.000610	-0.330000	41.000000	58.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.034200	38850.300000	7.000000	16.000000	26.000000	Spectrum40945 scans:11151,	LVEVNGENVEKETH	L[+28]VEVNGENVEKETH	R	Q	99.700000	53.200000	51.100000	44.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1659.850000	3.000000	-0.004900	-3.000000	59.000000	72.000000	10.017267	6.979067	2.650367	0.400600	0.204150	NaN	NaN	NaN	NaN	12.589251	10.125351	4.608532	0.466017	0.277208	NaN	NaN	NaN	NaN	6.527634	5.201279	0.470354	0.482357	1.000000	1.000000	0.269305	0.074074	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum37475 scans:7085,	LVGMPAKR	NaN	R	Q	98.800000	28.300000	45.300000	12.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	936.620000	3.000000	-0.000680	-0.730000	100.000000	107.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum33604 scans:2699,	LVGMPAKR	NaN	R	Q	99.000000	32.000000	47.400000	13.300000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	960.590000	3.000000	0.000050	0.052000	100.000000	107.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum37556 scans:7178,	LVGMPAKR	NaN	R	Q	99.000000	31.400000	45.800000	20.000000	Dimethyl (+28), Oxidation (+16), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	952.610000	3.000000	-0.000230	-0.240000	100.000000	107.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Obg-like ATPase 1 OS=Homo sapiens GN=OLA1 PE=1 SV=2	sp|Q9NTK5|OLA1_HUMAN	OLA1_HUMAN	Obg-like ATPase 1 OS=Homo sapiens GN=OLA1 PE=1 SV=2	100.000000	0.007900	44727.400000	4.000000	5.000000	6.000000	Spectrum47498 scans:18690,	LVNLSEKDYIR	L[+28]VNLSEKDYIR	Y	K	99.100000	35.000000	50.200000	21.700000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1414.840000	3.000000	-0.001200	-0.830000	228.000000	238.000000	0.908400	0.544133	0.649567	15.358550	NaN	NaN	NaN	NaN	NaN	1.141636	0.789438	1.129485	17.866570	NaN	NaN	NaN	NaN	NaN	9.504103	0.789438	0.427634	NaN	1.000000	NaN	0.268057	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Obg-like ATPase 1 OS=Homo sapiens GN=OLA1 PE=1 SV=2	sp|Q9NTK5|OLA1_HUMAN	OLA1_HUMAN	Obg-like ATPase 1 OS=Homo sapiens GN=OLA1 PE=1 SV=2	100.000000	0.007900	44727.400000	4.000000	5.000000	6.000000	Spectrum47480 scans:18670,	LVNLSEKDYIR	L[+28]VNLSEKDYIR	Y	K	99.700000	65.000000	50.900000	50.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1422.820000	3.000000	0.000130	0.088000	228.000000	238.000000	0.908400	0.544133	0.649567	15.358550	NaN	NaN	NaN	NaN	NaN	1.141636	0.789438	1.129485	17.866570	NaN	NaN	NaN	NaN	NaN	9.504103	0.789438	0.427634	NaN	1.000000	NaN	0.267747	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	sp|P53396|ACLY_HUMAN	ACLY_HUMAN	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	100.000000	0.012500	120824.800000	3.000000	4.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33441.33441.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33441"	LVSSLTSGLLTIGDR	L[+28]VSSLTSGLLTIGDR	D	F	99.700000	73.900000	56.300000	58.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1568.900000	2.000000	0.001200	0.750000	920.000000	934.000000	0.320100	NaN	NaN	0.653000	0.431100	0.660150	NaN	NaN	NaN	0.402287	NaN	NaN	0.759634	0.585376	0.986845	NaN	NaN	NaN	0.580960	0.585376	0.189946	NaN	0.433058	NaN	0.267437	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	sp|P53396|ACLY_HUMAN	ACLY_HUMAN	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	100.000000	0.013400	120824.800000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.28720.28720.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28720"	LVSSLTSGLLTIGDR	L[+28]VSSLTSGLLTIGDR	D	F	99.700000	79.000000	56.100000	63.900000	Dimethyl (+28), Label:13C(6) (+6)	1564.910000	2.000000	-0.008000	-5.100000	920.000000	934.000000	0.320100	NaN	NaN	0.653000	0.431100	0.660150	NaN	NaN	NaN	0.402287	NaN	NaN	0.759634	0.585376	0.986845	NaN	NaN	NaN	0.580960	0.585376	0.189946	NaN	0.833266	NaN	0.267129	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transcription elongation factor B polypeptide 2 OS=Homo sapiens GN=TCEB2 PE=1 SV=1	sp|Q15370-2|ELOB_HUMAN	ELOB_HUMAN	Isoform 2 of Transcription elongation factor B polypeptide 2 OS=Homo sapiens GN=TCEB2	100.000000	0.001320	0.000000	1.000000	1.000000	1.000000	Spectrum54753 scans:26944,	LYKDDQLLDDGKTLGECGFTSQTAR	L[+28]YKDDQLLDDGKTLGEC[+57]GFTSQTAR	R	P	99.700000	51.800000	56.100000	39.300000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Carbamidomethyl (+57), Label:13C(6) (+6)	2928.510000	4.000000	-0.003600	-1.200000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6	sp|Q15084|PDIA6_HUMAN	PDIA6_HUMAN	Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1	100.000000	0.014400	48104.300000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate1_apoptosis.28656.28656.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28656"	LYSSSDDVIELTPSNFNR	L[+28]YSSSDDVIELTPSNFNR	G	E	99.700000	132.000000	54.800000	121.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2094.010000	2.000000	-0.001300	-0.630000	20.000000	37.000000	0.528133	0.302200	0.576133	0.948400	0.655200	0.690850	NaN	2.905243	NaN	0.663734	0.438437	1.001797	1.103272	0.889673	1.032738	NaN	1.237315	NaN	0.883503	0.855142	0.155207	0.065980	1.000000	0.079690	0.265291	0.005031	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6	sp|Q15084|PDIA6_HUMAN	PDIA6_HUMAN	Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1	100.000000	0.021100	48104.300000	3.000000	8.000000	16.000000	Spectrum58083 scans:30926,	LYSSSDDVIELTPSNFNR	L[+28]YSSSDDVIELTPSNFNR	G	E	99.700000	128.000000	51.400000	119.000000	Dimethyl (+28), Label:13C(6) (+6)	2090.030000	2.000000	0.000790	0.380000	20.000000	37.000000	0.528133	0.302200	0.576133	0.948400	0.655200	0.690850	NaN	2.905243	NaN	0.663734	0.438437	1.001797	1.103272	0.889673	1.032738	NaN	1.237315	NaN	0.883503	0.855142	0.155207	0.065980	1.000000	0.079663	0.264683	0.005030	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6	sp|Q15084|PDIA6_HUMAN	PDIA6_HUMAN	Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1	100.000000	0.012500	48104.300000	1.000000	3.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.29098.29098.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29098"	LYSSSDDVIELTPSNFNR	L[+28]YSSSDDVIELTPSNFNR	G	E	99.700000	110.000000	54.500000	110.000000	Dimethyl (+28)	2084.010000	2.000000	-0.000980	-0.470000	20.000000	37.000000	0.528133	0.302200	0.576133	0.948400	0.655200	0.690850	NaN	2.905243	NaN	0.663734	0.438437	1.001797	1.103272	0.889673	1.032738	NaN	1.237315	NaN	0.883503	0.855142	0.155207	0.065980	1.000000	0.078623	0.264381	0.005028	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	sp|P25789|PSA4_HUMAN	PSA4_HUMAN	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	100.000000	0.012500	29466.800000	3.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.35566.35566.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35566"	MACSVAGITSDANVLTNELR	M[+28]AC[+57]SVAGITSDANVLTNELR	D	L	99.700000	88.800000	56.100000	77.000000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2159.070000	2.000000	0.006300	2.900000	72.000000	91.000000	0.569933	0.290600	0.518333	0.734750	0.426550	0.582250	NaN	NaN	NaN	0.716267	0.421608	0.901293	0.854733	0.579198	0.870394	NaN	NaN	NaN	0.785500	0.500403	0.055966	0.099428	0.063967	0.117153	0.264079	0.073720	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	sp|P25789|PSA4_HUMAN	PSA4_HUMAN	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	100.000000	0.012500	29466.800000	3.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.35541.35541.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35541"	MACSVAGITSDANVLTNELR	M[+28]AC[+57]SVAGITSDANVLTNELR	D	L	99.700000	87.300000	55.300000	81.500000	Dimethyl (+28), Carbamidomethyl (+57)	2149.050000	2.000000	-0.005400	-2.500000	72.000000	91.000000	0.569933	0.290600	0.518333	0.734750	0.426550	0.582250	NaN	NaN	NaN	0.716267	0.421608	0.901293	0.854733	0.579198	0.870394	NaN	NaN	NaN	0.785500	0.500403	0.055966	0.099428	0.076912	0.119341	0.263778	0.073697	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A	sp|P78559|MAP1A_HUMAN	MAP1A_HUMAN	Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A PE=1 SV=6	100.000000	0.015800	305468.400000	8.000000	11.000000	12.000000	Spectrum5342 scans:23384,	MADPEGLSSESGR	NaN	C	V	99.300000	55.500000	39.100000	45.700000	Oxidation (+16), Acetyl (+42)	1392.580000	2.000000	-0.003200	-2.300000	2579.000000	2591.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.029000	31307.200000	7.000000	15.000000	22.000000	Spectrum19345 scans:12440,	MAGIDDCYTSAR	M[+28]AGIDDC[+57]YTSAR	M	G	99.700000	72.800000	42.400000	60.200000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1392.610000	2.000000	-0.002500	-1.800000	216.000000	227.000000	0.490900	0.191933	0.391200	NaN	NaN	NaN	NaN	NaN	NaN	0.616941	0.278460	0.680230	NaN	NaN	NaN	NaN	NaN	NaN	0.616941	0.278460	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.029000	31307.200000	7.000000	15.000000	22.000000	Spectrum19341 scans:12433,	MAGIDDCYTSAR	M[+28]AGIDDC[+57]YTSAR	M	G	99.700000	69.500000	41.000000	58.000000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1396.600000	2.000000	-0.001100	-0.770000	216.000000	227.000000	0.490900	0.191933	0.391200	NaN	NaN	NaN	NaN	NaN	NaN	0.616941	0.278460	0.680230	NaN	NaN	NaN	NaN	NaN	NaN	0.616941	0.278460	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.029000	31307.200000	7.000000	15.000000	22.000000	Spectrum4865 scans:22179,	MAGIDDCYTSAR	NaN	M	G	99.700000	68.000000	39.100000	60.200000	Oxidation (+16), Dimethyl (+28), Carbamidomethyl (+57)	1402.580000	2.000000	-0.001200	-0.830000	216.000000	227.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.029000	31307.200000	7.000000	15.000000	22.000000	Spectrum19344 scans:12439,	MAGIDDCYTSAR	M[+28]AGIDDC[+57]YTSAR	M	G	99.700000	70.000000	40.400000	54.000000	Dimethyl (+28), Carbamidomethyl (+57)	1386.590000	2.000000	-0.001500	-1.100000	216.000000	227.000000	0.490900	0.191933	0.391200	NaN	NaN	NaN	NaN	NaN	NaN	0.616941	0.278460	0.680230	NaN	NaN	NaN	NaN	NaN	NaN	0.616941	0.278460	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.029000	31307.200000	7.000000	15.000000	22.000000	Spectrum17857 scans:9135,	MAGIDDCYTSAR	NaN	M	G	99.700000	81.700000	39.800000	72.100000	Oxidation (+16), Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1412.590000	2.000000	-0.001600	-1.100000	216.000000	227.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.029000	31307.200000	7.000000	15.000000	22.000000	Spectrum17859 scans:9137,	MAGIDDCYTSAR	NaN	M	G	99.700000	87.300000	41.300000	73.900000	Oxidation (+16), Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1408.600000	2.000000	-0.001500	-1.100000	216.000000	227.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	RS6_HUMAN	RS6_HUMAN	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	100.000000	0.006590	28663.700000	2.000000	4.000000	5.000000	Spectrum12005 scans:43236,	MATEVAADALGEEWKGY	NaN	R	V	99.700000	54.000000	48.700000	45.100000	Oxidation (+16), Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1919.910000	3.000000	0.000890	0.460000	32.000000	48.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	DNA replication licensing factor MCM4 OS=Homo sapiens GN=MCM4 PE=1 SV=5	MCM4_HUMAN	MCM4_HUMAN	DNA replication licensing factor MCM4 OS=Homo sapiens GN=MCM4 PE=1 SV=5	100.000000	0.002500	96542.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.32098.32098.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32098"	MAVNEIFFDR	NaN	D	Y	99.500000	52.600000	50.200000	38.700000	Oxidation (+16), Dimethyl (+28)	1284.610000	2.000000	-0.002500	-2.000000	239.000000	248.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	WD repeat-containing protein 6 (Fragment) OS=Homo sapiens GN=WDR6 PE=4 SV=1	C9K020_HUMAN	C9K020_HUMAN	WD repeat-containing protein 6 (Fragment) OS=Homo sapiens GN=WDR6 PE=4 SV=1	98.900000	0.005010	30302.400000	1.000000	1.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38911.38911.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38911"	MDALEDYVWPR	NaN	-	A	99.700000	62.500000	47.000000	44.000000	Oxidation (+16), Acetyl (+42)	1451.650000	2.000000	0.006200	4.300000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of OTU domain-containing protein 7A OS=Homo sapiens GN=OTUD7A	sp|Q8TE49|OTU7A_HUMAN	OTU7A_HUMAN	OTU domain-containing protein 7A OS=Homo sapiens GN=OTUD7A PE=1 SV=1	98.900000	0.005010	100659.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46904.46904.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46904"	MDAVLSDFVR	M[+42]DAVLSDFVR	D	S	99.700000	70.700000	50.000000	52.100000	Acetyl (+42)	1193.570000	2.000000	-0.000930	-0.780000	27.000000	36.000000	0.171400	0.056200	0.305900	0.552450	0.485350	0.960300	NaN	NaN	NaN	0.215408	0.081536	0.531907	0.642664	0.659040	1.435533	NaN	NaN	NaN	0.429036	0.370288	0.294110	0.421636	1.000000	1.000000	0.256752	0.073207	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of OTU domain-containing protein 7A OS=Homo sapiens GN=OTUD7A	sp|Q8TE49-2|OTU7A_HUMAN	OTU7A_HUMAN	Isoform 2 of OTU domain-containing protein 7A OS=Homo sapiens GN=OTUD7A	98.900000	0.005010	101409.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46932.46932.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46932"	MDAVLSDFVR	M[+42]DAVLSDFVR	D	S	99.700000	58.700000	50.600000	34.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1203.590000	2.000000	0.002000	1.700000	27.000000	36.000000	0.171400	0.056200	0.305900	0.552450	0.485350	0.960300	NaN	NaN	NaN	0.215408	0.081536	0.531907	0.642664	0.659040	1.435533	NaN	NaN	NaN	0.429036	0.370288	0.294110	0.421636	1.000000	0.769231	0.256467	0.073184	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 2 of BH3-interacting domain death agonist OS=Homo sapiens GN=BID	sp|P55957-2|BID_HUMAN	BID_HUMAN	Isoform 2 of BH3-interacting domain death agonist OS=Homo sapiens GN=BID	98.100000	0.004720	26818.800000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.22744.22744.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22744"	MDCEVNNGSSLR	NaN	A	D	99.700000	71.600000	40.300000	71.600000	Oxidation (+16), Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1448.590000	2.000000	-0.004500	-3.100000	47.000000	58.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of BH3-interacting domain death agonist OS=Homo sapiens GN=BID	sp|P55957-2|BID_HUMAN	BID_HUMAN	Isoform 2 of BH3-interacting domain death agonist OS=Homo sapiens GN=BID	97.800000	0.007000	26818.800000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.31410.31410.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31410"	MDCEVNNGSSLR	M[+42]DC[+57]EVNNGSSLR	A	D	99.600000	48.500000	41.800000	48.500000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1432.590000	2.000000	-0.004300	-3.000000	47.000000	58.000000	NaN	NaN	NaN	NaN	NaN	91.841300	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.291726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of BH3-interacting domain death agonist OS=Homo sapiens GN=BID	sp|P55957-2|BID_HUMAN	BID_HUMAN	Isoform 2 of BH3-interacting domain death agonist OS=Homo sapiens GN=BID	97.800000	0.007000	26818.800000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.31482.31482.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31482"	MDCEVNNGSSLR	M[+42]DC[+57]EVNNGSSLR	A	D	99.600000	49.100000	41.700000	49.100000	Acetyl (+42), Carbamidomethyl (+57)	1422.590000	2.000000	-0.001400	-0.950000	47.000000	58.000000	NaN	NaN	NaN	NaN	NaN	91.841300	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.291726	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Translation initiation factor eIF-2B subunit alpha OS=Homo sapiens GN=EIF2B1 PE=1 SV=1	sp|Q14232-2|EI2BA_HUMAN	EI2BA_HUMAN	Isoform 2 of Translation initiation factor eIF-2B subunit alpha OS=Homo sapiens GN=EIF2B1	94.400000	0.001320	0.000000	1.000000	1.000000	1.000000	Spectrum65846 scans:40118,	MDDKELIEYFKSQ	NaN	-	M	98.700000	34.300000	50.500000	20.900000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1758.870000	3.000000	0.001800	1.000000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	XPOT_HUMAN	XPOT_HUMAN	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	100.000000	0.017100	109948.600000	2.000000	6.000000	13.000000	Spectrum32112 scans:25618,	MDEQALLGLNPNADSDFR	NaN	-	Q	99.700000	84.300000	46.700000	77.200000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	2068.940000	2.000000	-0.004000	-1.900000	1.000000	18.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	XPOT_HUMAN	XPOT_HUMAN	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	100.000000	0.025000	109948.600000	2.000000	6.000000	10.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40594.40594.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40594"	MDEQALLGLNPNADSDFR	M[+42]DEQALLGLNPNADSDFR	-	Q	99.500000	52.000000	50.900000	44.100000	Acetyl (+42), Label:13C(6)15N(4) (+10)	2056.940000	2.000000	-0.000140	-0.067000	1.000000	18.000000	0.716200	0.627500	0.863400	0.758050	0.470550	0.622500	NaN	NaN	NaN	0.900088	0.910388	1.501304	0.881838	0.638944	0.930563	NaN	NaN	NaN	0.890963	0.774666	0.006520	0.110416	0.016709	0.979904	0.254772	0.073022	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	XPOT_HUMAN	XPOT_HUMAN	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	100.000000	0.025000	109948.600000	2.000000	6.000000	10.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40609.40609.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40609"	MDEQALLGLNPNADSDFR	M[+42]DEQALLGLNPNADSDFR	-	Q	99.700000	67.300000	50.300000	67.300000	Acetyl (+42)	2046.930000	2.000000	-0.002700	-1.300000	1.000000	18.000000	0.716200	0.627500	0.863400	0.758050	0.470550	0.622500	NaN	NaN	NaN	0.900088	0.910388	1.501304	0.881838	0.638944	0.930563	NaN	NaN	NaN	0.890963	0.774666	0.006520	0.110416	0.016697	1.000000	0.253933	0.072999	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	XPOT_HUMAN	XPOT_HUMAN	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	100.000000	0.025000	109948.600000	2.000000	6.000000	10.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.35177.35177.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35177"	MDEQALLGLNPNADSDFR	NaN	-	Q	99.700000	77.100000	49.900000	77.100000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	2072.930000	2.000000	-0.000510	-0.250000	1.000000	18.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	XPOT_HUMAN	XPOT_HUMAN	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	100.000000	0.022400	109948.600000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis.29939.29939.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29939"	MDEQALLGLNPNADSDFR	NaN	-	Q	99.700000	91.200000	49.300000	88.500000	Oxidation (+16), Acetyl (+42)	2062.920000	2.000000	-0.003700	-1.800000	1.000000	18.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DBIRD complex subunit ZNF326 OS=Homo sapiens GN=ZNF326 PE=1 SV=2	sp|Q5BKZ1|ZN326_HUMAN	ZN326_HUMAN	DBIRD complex subunit ZNF326 OS=Homo sapiens GN=ZNF326 PE=1 SV=2	98.800000	0.002630	65635.500000	1.000000	1.000000	2.000000	Spectrum8311 scans:30992,	MDFEDDYTHSACR	NaN	-	N	99.700000	83.200000	28.900000	81.800000	Oxidation (+16), Acetyl (+42), Carbamidomethyl (+57), Label:13C(6) (+6)	1709.630000	2.000000	-0.004500	-2.600000	1.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Target of Myb protein 1 OS=Homo sapiens GN=TOM1	sp|O60784|TOM1_HUMAN	TOM1_HUMAN	Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2	99.900000	0.010000	53801.100000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.43881.43881.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43881"	MDFLLGNPFSSPVGQR	NaN	-	I	99.400000	59.500000	53.500000	55.300000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1831.890000	2.000000	0.005000	2.700000	1.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Target of Myb protein 1 OS=Homo sapiens GN=TOM1	sp|O60784|TOM1_HUMAN	TOM1_HUMAN	Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2	99.900000	0.010000	53801.100000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.43979.43979.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43979"	MDFLLGNPFSSPVGQR	NaN	-	I	99.700000	65.200000	52.600000	59.000000	Oxidation (+16), Acetyl (+42)	1821.870000	2.000000	-0.006700	-3.700000	1.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	V-type proton ATPase catalytic subunit A OS=Homo sapiens GN=ATP6V1A PE=1 SV=2	VATA_HUMAN	VATA_HUMAN	V-type proton ATPase catalytic subunit A OS=Homo sapiens GN=ATP6V1A PE=1 SV=2	100.000000	0.001320	68287.400000	1.000000	1.000000	1.000000	Spectrum29403 scans:13602,	MDFSKLPK	NaN	-	I	98.900000	51.200000	49.100000	33.900000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1094.600000	2.000000	-0.000440	-0.400000	1.000000	8.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.065900	83149.600000	5.000000	13.000000	50.000000	Spectrum31814 scans:23112,	MDGAGAEEVLAPLR	NaN	S	L	99.700000	113.000000	49.000000	102.000000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	1491.740000	2.000000	0.002400	1.600000	55.000000	68.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.065900	83149.600000	5.000000	13.000000	50.000000	Spectrum31601 scans:21901,	MDGAGAEEVLAPLR	NaN	S	L	99.700000	112.000000	47.600000	95.400000	Oxidation (+16), Acetyl (+42)	1485.710000	2.000000	-0.003600	-2.400000	55.000000	68.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.065900	83149.600000	5.000000	13.000000	50.000000	Spectrum63332 scans:37320,	MDGAGAEEVLAPLR	M[+42]DGAGAEEVLAPLR	S	L	99.700000	107.000000	49.500000	91.200000	Acetyl (+42), Label:13C(6) (+6)	1475.740000	2.000000	-0.000760	-0.510000	55.000000	68.000000	0.606567	0.324300	0.534567	0.734050	0.575200	0.783650	NaN	NaN	NaN	0.762306	0.470500	0.929520	0.853919	0.781044	1.171463	NaN	NaN	NaN	0.808112	0.625772	0.036047	0.154837	0.206409	1.000000	0.249013	0.072723	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.065900	83149.600000	5.000000	13.000000	50.000000	Spectrum31602 scans:21904,	MDGAGAEEVLAPLR	NaN	S	L	99.700000	112.000000	47.900000	98.600000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1495.720000	2.000000	-0.002500	-1.700000	55.000000	68.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.143000	83149.600000	4.000000	12.000000	57.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.35648.35648.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35648"	MDGAGAEEVLAPLR	M[+42]DGAGAEEVLAPLR	S	L	99.700000	98.200000	52.500000	80.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1479.730000	2.000000	-0.000420	-0.280000	55.000000	68.000000	0.606567	0.324300	0.534567	0.734050	0.575200	0.783650	NaN	NaN	NaN	0.762306	0.470500	0.929520	0.853919	0.781044	1.171463	NaN	NaN	NaN	0.808112	0.625772	0.036047	0.154837	0.205730	1.000000	0.247415	0.072678	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.143000	83149.600000	4.000000	12.000000	57.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.35647.35647.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35647"	MDGAGAEEVLAPLR	M[+42]DGAGAEEVLAPLR	S	L	99.700000	103.000000	52.300000	87.400000	Acetyl (+42)	1469.720000	2.000000	-0.000520	-0.350000	55.000000	68.000000	0.606567	0.324300	0.534567	0.734050	0.575200	0.783650	NaN	NaN	NaN	0.762306	0.470500	0.929520	0.853919	0.781044	1.171463	NaN	NaN	NaN	0.808112	0.625772	0.036047	0.154837	0.039671	0.173150	0.247151	0.072564	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Isoform 2 of Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1	sp|P26599|PTBP1_HUMAN	PTBP1_HUMAN	Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1	97.300000	0.026300	57204.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction2A.18627.18627.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18627"	MDGIVPDIAVGTKR	NaN	-	G	99.700000	82.700000	55.500000	73.200000	Oxidation (+16), Acetyl (+42), Dimethyl (+28)	1556.820000	2.000000	-0.001100	-0.700000	1.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1	sp|P26599|PTBP1_HUMAN	PTBP1_HUMAN	Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1	100.000000	0.050100	57204.500000	2.000000	8.000000	20.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.31629.31629.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31629"	MDGIVPDIAVGTKR	M[+42]DGIVPDIAVGTKR	-	G	99.700000	84.400000	55.700000	74.400000	Acetyl (+42), Dimethyl (+28)	1540.830000	2.000000	-0.000730	-0.470000	1.000000	14.000000	4.117700	8.058300	1.950667	21.067350	5.428700	0.280600	NaN	NaN	0.391729	5.174940	11.691121	3.391874	24.507605	7.371444	0.419463	NaN	NaN	0.187717	14.841273	9.531283	0.195986	0.095605	1.000000	0.106843	0.245056	0.072518	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Isoform 2 of Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1	sp|P26599|PTBP1_HUMAN	PTBP1_HUMAN	Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1	99.400000	0.021500	57204.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction5A.18728.18728.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18728"	MDGIVPDIAVGTKR	NaN	-	G	99.700000	83.100000	56.200000	48.500000	Oxidation (+16), Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1566.870000	2.000000	-0.003300	-2.100000	1.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1	sp|P26599|PTBP1_HUMAN	PTBP1_HUMAN	Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1	100.000000	0.067200	57204.500000	2.000000	6.000000	15.000000	Nsco_Tails_biological_replicate2_apoptosis.27107.27107.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27107"	MDGIVPDIAVGTKR	M[+42]DGIVPDIAVGTKR	-	G	99.700000	76.300000	56.100000	60.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1558.850000	2.000000	-0.001500	-0.990000	1.000000	14.000000	4.117700	8.058300	1.950667	21.067350	5.428700	0.280600	NaN	NaN	0.391729	5.174940	11.691121	3.391874	24.507605	7.371444	0.419463	NaN	NaN	0.187717	14.841273	9.531283	0.195986	0.095605	0.303874	0.618933	0.244280	0.072427	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1	sp|P26599|PTBP1_HUMAN	PTBP1_HUMAN	Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1	100.000000	0.067200	57204.500000	2.000000	6.000000	15.000000	Nsco_Tails_biological_replicate2_apoptosis.20873.20873.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20873"	MDGIVPDIAVGTKR	NaN	-	G	99.700000	96.000000	55.800000	79.500000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1574.840000	2.000000	-0.002800	-1.800000	1.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform 2 of Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1	sp|P26599|PTBP1_HUMAN	PTBP1_HUMAN	Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1	93.000000	0.002310	57204.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.33400.33400.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33400"	MDGIVPDIAVGTKR	M[+42]DGIVPDIAVGTKR	-	G	99.300000	60.900000	56.200000	43.200000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1550.870000	2.000000	-0.002200	-1.400000	1.000000	14.000000	4.117700	8.058300	1.950667	21.067350	5.428700	0.280600	NaN	NaN	0.391729	5.174940	11.691121	3.391874	24.507605	7.371444	0.419463	NaN	NaN	0.187717	14.841273	9.531283	0.195986	0.095605	0.437344	0.223852	0.243765	0.072337	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	MCM6_HUMAN	MCM6_HUMAN	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	100.000000	0.017300	92872.600000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.26166.26166.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26166"	MDLAAAAEPGAGSQHLEVR	M[+42]DLAAAAEPGAGSQHLEVR	-	D	99.700000	93.400000	54.000000	90.600000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1973.950000	2.000000	-0.000260	-0.130000	1.000000	19.000000	0.565067	0.262667	0.475233	0.615050	0.441750	0.722650	NaN	NaN	NaN	0.710150	0.381081	0.826349	0.715486	0.599837	1.080275	NaN	NaN	NaN	0.712818	0.490459	0.002383	0.139687	0.005314	0.159761	0.243509	0.072314	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	MCM6_HUMAN	MCM6_HUMAN	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	100.000000	0.011900	92872.600000	1.000000	5.000000	9.000000	Spectrum23104 scans:13134,	MDLAAAAEPGAGSQHLEVR	NaN	-	D	99.700000	111.000000	48.800000	97.000000	Oxidation (+16), Acetyl (+42)	1979.940000	2.000000	-0.001200	-0.630000	1.000000	19.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	MCM6_HUMAN	MCM6_HUMAN	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	100.000000	0.011900	92872.600000	1.000000	5.000000	9.000000	Spectrum23105 scans:13135,	MDLAAAAEPGAGSQHLEVR	NaN	-	D	99.700000	124.000000	49.900000	111.000000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	1985.950000	2.000000	-0.002500	-1.200000	1.000000	19.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	MCM6_HUMAN	MCM6_HUMAN	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	100.000000	0.037600	92872.600000	1.000000	7.000000	15.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.26470.26470.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26470"	MDLAAAAEPGAGSQHLEVR	M[+42]DLAAAAEPGAGSQHLEVR	-	D	99.700000	111.000000	53.900000	98.300000	Acetyl (+42)	1963.950000	2.000000	0.003100	1.600000	1.000000	19.000000	0.565067	0.262667	0.475233	0.615050	0.441750	0.722650	NaN	NaN	NaN	0.710150	0.381081	0.826349	0.715486	0.599837	1.080275	NaN	NaN	NaN	0.712818	0.490459	0.002383	0.139687	0.108793	0.770613	0.242488	0.072022	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	MCM6_HUMAN	MCM6_HUMAN	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	100.000000	0.026900	92872.600000	2.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.23011.23011.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23011"	MDLAAAAEPGAGSQHLEVR	M[+42]DLAAAAEPGAGSQHLEVR	-	D	99.700000	97.000000	54.900000	85.500000	Acetyl (+42), Label:13C(6) (+6)	1969.970000	2.000000	0.003000	1.500000	1.000000	19.000000	0.565067	0.262667	0.475233	0.615050	0.441750	0.722650	NaN	NaN	NaN	0.710150	0.381081	0.826349	0.715486	0.599837	1.080275	NaN	NaN	NaN	0.712818	0.490459	0.002383	0.139687	0.107380	0.769390	0.242234	0.071999	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	MCM6_HUMAN	MCM6_HUMAN	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	100.000000	0.026900	92872.600000	2.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.17680.17680.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17680"	MDLAAAAEPGAGSQHLEVR	NaN	-	D	99.700000	103.000000	53.100000	93.300000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1989.940000	2.000000	-0.001800	-0.890000	1.000000	19.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Homo sapiens GN=ILKAP PE=1 SV=1	ILKAP_HUMAN	ILKAP_HUMAN	Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Homo sapiens GN=ILKAP PE=1 SV=1	100.000000	0.002500	42889.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.36122.36122.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36122"	MDLFGDLPEPER	NaN	-	S	99.600000	53.500000	47.600000	45.600000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1485.670000	2.000000	-0.003400	-2.300000	1.000000	12.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoacetylglucosamine mutase OS=Homo sapiens GN=PGM3 PE=1 SV=1	sp|O95394-3|AGM1_HUMAN	AGM1_HUMAN	Isoform 2 of Phosphoacetylglucosamine mutase OS=Homo sapiens GN=PGM3	99.900000	0.001320	0.000000	1.000000	1.000000	1.000000	Spectrum56078 scans:28486,	MDLGAITKY	NaN	-	S	98.900000	57.800000	47.900000	35.800000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1104.560000	2.000000	0.001000	0.900000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2	RNH2A_HUMAN	RNH2A_HUMAN	Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2	100.000000	0.010500	33377.000000	2.000000	5.000000	8.000000	Spectrum30390 scans:16712,	MDLSELER	NaN	-	D	99.000000	60.200000	44.600000	37.200000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	1055.490000	2.000000	0.000650	0.610000	1.000000	8.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2	RNH2A_HUMAN	RNH2A_HUMAN	Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2	100.000000	0.010500	33377.000000	2.000000	5.000000	8.000000	Spectrum50680 scans:22326,	MDLSELER	NaN	-	D	99.000000	59.300000	43.100000	35.800000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1059.480000	2.000000	0.000290	0.270000	1.000000	8.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2	RNH2A_HUMAN	RNH2A_HUMAN	Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2	100.000000	0.010500	33377.000000	2.000000	5.000000	8.000000	Spectrum31816 scans:23139,	MDLSELER	NaN	-	D	99.000000	60.100000	42.500000	34.000000	Oxidation (+16), Acetyl (+42)	1049.470000	2.000000	0.000260	0.240000	1.000000	8.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2	RNH2A_HUMAN	RNH2A_HUMAN	Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2	92.100000	0.002330	33377.000000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.55886.55886.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=55886"	MDLSELER	M[+42]DLSELER	-	D	99.000000	56.100000	47.300000	31.600000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1043.480000	2.000000	-0.000950	-0.910000	1.000000	8.000000	0.602967	0.261367	0.433467	0.690950	0.410400	0.593950	NaN	NaN	NaN	0.757781	0.379195	0.753724	0.803781	0.557268	0.887884	NaN	NaN	NaN	0.780781	0.468232	0.018748	0.119628	0.021506	0.245918	0.240222	0.071820	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1	IPO7_HUMAN	IPO7_HUMAN	Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1	99.800000	0.015000	119501.500000	1.000000	4.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.45245.45245.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=45245"	MDPNTIIEALR	NaN	-	G	99.700000	74.900000	52.400000	67.200000	Oxidation (+16), Acetyl (+42)	1329.670000	2.000000	0.005400	4.100000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1	IPO7_HUMAN	IPO7_HUMAN	Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1	98.100000	0.002330	119501.500000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.63891.63891.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=63891"	MDPNTIIEALR	M[+42]DPNTIIEALR	-	G	99.700000	88.400000	52.500000	75.400000	Acetyl (+42)	1313.660000	2.000000	-0.004000	-3.000000	1.000000	11.000000	5.404467	0.588100	0.235500	0.539850	0.321700	0.597500	NaN	NaN	NaN	6.792091	0.853226	0.409494	0.628006	0.436825	0.893191	NaN	NaN	NaN	3.710049	0.645025	0.441304	0.198766	0.519975	0.205457	0.239724	0.071776	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1	IPO7_HUMAN	IPO7_HUMAN	Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1	100.000000	0.013400	119501.500000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.38056.38056.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38056"	MDPNTIIEALR	M[+42]DPNTIIEALR	-	G	99.700000	74.400000	52.800000	61.700000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1323.670000	2.000000	0.000270	0.200000	1.000000	11.000000	5.404467	0.588100	0.235500	0.539850	0.321700	0.597500	NaN	NaN	NaN	6.792091	0.853226	0.409494	0.628006	0.436825	0.893191	NaN	NaN	NaN	3.710049	0.645025	0.441304	0.198766	0.842777	0.220781	0.239228	0.071687	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1	sp|Q9H871|RMD5A_HUMAN	RMD5A_HUMAN	Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1	100.000000	0.005270	43975.100000	2.000000	3.000000	4.000000	Spectrum17298 scans:8021,	MDQCVTVER	NaN	-	E	99.700000	64.300000	40.200000	44.100000	Oxidation (+16), Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1204.510000	2.000000	0.000200	0.170000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1	sp|Q9H871|RMD5A_HUMAN	RMD5A_HUMAN	Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1	98.900000	0.007510	43975.100000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.15601.15601.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15601"	MDQCVTVER	NaN	-	E	99.700000	61.800000	43.300000	48.500000	Oxidation (+16), Acetyl (+42), Carbamidomethyl (+57)	1194.510000	2.000000	0.004400	3.700000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1	sp|Q9H871|RMD5A_HUMAN	RMD5A_HUMAN	Protein RMD5 homolog A OS=Homo sapiens GN=RMND5A PE=1 SV=1	98.900000	0.007510	43975.100000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.15618.15618.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15618"	MDQCVTVER	M[+42]DQC[+57]VTVER	-	E	99.700000	59.700000	44.200000	51.800000	Acetyl (+42), Carbamidomethyl (+57)	1178.510000	2.000000	-0.000650	-0.550000	1.000000	9.000000	NaN	0.149467	NaN	1.565800	0.232900	0.153750	NaN	NaN	NaN	NaN	0.216849	NaN	1.821492	0.316247	0.229838	NaN	NaN	NaN	1.821492	0.266548	NaN	0.117353	NaN	1.000000	1.000000	0.071620	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	SYAC_HUMAN	SYAC_HUMAN	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	100.000000	0.063200	106795.200000	2.000000	8.000000	48.000000	Spectrum31021 scans:19040,	MDSTLTASEIR	M[+42]DSTLTASEIR	-	Q	99.700000	77.900000	46.200000	60.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1274.600000	2.000000	-0.001700	-1.300000	1.000000	11.000000	0.801467	0.512000	0.631867	0.720700	0.511800	0.708650	NaN	NaN	NaN	1.007247	0.742818	1.098707	0.838389	0.694956	1.059347	NaN	NaN	NaN	0.922818	0.718887	0.058083	0.021185	0.176797	1.000000	0.237265	0.071554	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	SYAC_HUMAN	SYAC_HUMAN	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	100.000000	0.063200	106795.200000	2.000000	8.000000	48.000000	Spectrum31027 scans:19051,	MDSTLTASEIR	M[+42]DSTLTASEIR	-	Q	99.700000	87.400000	46.000000	68.700000	Acetyl (+42)	1264.600000	2.000000	-0.000990	-0.780000	1.000000	11.000000	0.801467	0.512000	0.631867	0.720700	0.511800	0.708650	NaN	NaN	NaN	1.007247	0.742818	1.098707	0.838389	0.694956	1.059347	NaN	NaN	NaN	0.922818	0.718887	0.058083	0.021185	0.061579	0.503506	0.237022	0.071532	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	SYAC_HUMAN	SYAC_HUMAN	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	100.000000	0.063200	106795.200000	2.000000	8.000000	48.000000	Spectrum31009 scans:18964,	MDSTLTASEIR	NaN	-	Q	99.700000	91.900000	45.300000	79.100000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1290.600000	2.000000	-0.002100	-1.600000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	SYAC_HUMAN	SYAC_HUMAN	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	100.000000	0.063200	106795.200000	2.000000	8.000000	48.000000	Spectrum29452 scans:13830,	MDSTLTASEIR	NaN	-	Q	99.700000	92.600000	45.100000	78.800000	Oxidation (+16), Acetyl (+42)	1280.590000	2.000000	-0.000180	-0.140000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	SYAC_HUMAN	SYAC_HUMAN	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	100.000000	0.063200	106795.200000	2.000000	8.000000	48.000000	Spectrum31023 scans:19043,	MDSTLTASEIR	NaN	-	Q	99.700000	96.200000	46.400000	79.900000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	1286.610000	2.000000	0.000067	0.052000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	SYAC_HUMAN	SYAC_HUMAN	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	100.000000	0.463000	106795.200000	1.000000	6.000000	43.000000	Nsco_Tails_biological_replicate_3_fraction5A.19050.19050.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19050"	MDSTLTASEIR	M[+42]DSTLTASEIR	-	Q	99.700000	74.800000	50.000000	64.500000	Acetyl (+42), Label:13C(6) (+6)	1270.610000	2.000000	-0.012000	-9.200000	1.000000	11.000000	0.801467	0.512000	0.631867	0.720700	0.511800	0.708650	NaN	NaN	NaN	1.007247	0.742818	1.098707	0.838389	0.694956	1.059347	NaN	NaN	NaN	0.922818	0.718887	0.058083	0.021185	0.073264	0.024398	0.235574	0.071377	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Beta-catenin-like protein 1 OS=Homo sapiens GN=CTNNBL1 PE=1 SV=1	sp|Q8WYA6|CTBL1_HUMAN	CTBL1_HUMAN	Beta-catenin-like protein 1 OS=Homo sapiens GN=CTNNBL1 PE=1 SV=1	98.900000	0.012500	65157.200000	1.000000	3.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.41149.41149.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41149"	MDVGELLSYQPNR	M[+42]DVGELLSYQPNR	-	G	99.700000	64.300000	50.700000	53.300000	Acetyl (+42)	1562.730000	2.000000	-0.006400	-4.100000	1.000000	13.000000	0.550900	0.157300	0.285500	0.774400	0.415250	0.536150	NaN	NaN	NaN	0.692346	0.228214	0.496435	0.900858	0.563854	0.801480	NaN	NaN	NaN	0.796602	0.396034	0.082847	0.255166	0.093917	0.459961	0.235334	0.071355	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Beta-catenin-like protein 1 OS=Homo sapiens GN=CTNNBL1 PE=1 SV=1	sp|Q8WYA6|CTBL1_HUMAN	CTBL1_HUMAN	Beta-catenin-like protein 1 OS=Homo sapiens GN=CTNNBL1 PE=1 SV=1	98.900000	0.012500	65157.200000	1.000000	3.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.41038.41038.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41038"	MDVGELLSYQPNR	M[+42]DVGELLSYQPNR	-	G	99.700000	71.300000	51.300000	63.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1572.750000	2.000000	-0.002900	-1.800000	1.000000	13.000000	0.550900	0.157300	0.285500	0.774400	0.415250	0.536150	NaN	NaN	NaN	0.692346	0.228214	0.496435	0.900858	0.563854	0.801480	NaN	NaN	NaN	0.796602	0.396034	0.082847	0.255166	0.093886	0.459722	0.234618	0.071333	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Beta-catenin-like protein 1 OS=Homo sapiens GN=CTNNBL1 PE=1 SV=1	sp|Q8WYA6|CTBL1_HUMAN	CTBL1_HUMAN	Beta-catenin-like protein 1 OS=Homo sapiens GN=CTNNBL1 PE=1 SV=1	98.800000	0.013400	65157.200000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.27916.27916.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27916"	MDVGELLSYQPNR	NaN	-	G	99.700000	59.700000	50.300000	42.700000	Oxidation (+16), Acetyl (+42)	1578.730000	2.000000	0.000030	0.019000	1.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Cytosolic Fe-S cluster assembly factor NUBP2 OS=Homo sapiens GN=NUBP2 PE=1 SV=1	NUBP2_HUMAN	NUBP2_HUMAN	Cytosolic Fe-S cluster assembly factor NUBP2 OS=Homo sapiens GN=NUBP2 PE=1 SV=1	97.200000	0.005760	28807.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.17873.17873.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17873"	MEAAAEPGNLAGVR	NaN	-	H	99.700000	60.700000	50.300000	46.600000	Oxidation (+16), Acetyl (+42)	1442.680000	2.000000	-0.004300	-3.000000	1.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Cytosolic Fe-S cluster assembly factor NUBP2 OS=Homo sapiens GN=NUBP2 PE=1 SV=1	NUBP2_HUMAN	NUBP2_HUMAN	Cytosolic Fe-S cluster assembly factor NUBP2 OS=Homo sapiens GN=NUBP2 PE=1 SV=1	98.300000	0.005010	28807.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.17877.17877.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17877"	MEAAAEPGNLAGVR	NaN	-	H	99.500000	56.600000	50.500000	48.000000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1452.690000	2.000000	-0.004700	-3.300000	1.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Protein Spindly OS=Homo sapiens GN=CCDC99 PE=4 SV=2	D6RDK5_HUMAN	D6RDK5_HUMAN	Protein Spindly OS=Homo sapiens GN=CCDC99 PE=4 SV=2	95.500000	0.004480	5173.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.31217.31217.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31217"	MEADIITNLR	M[+42]EADIITNLR	-	C	98.900000	59.600000	52.300000	37.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1226.630000	2.000000	0.004800	3.900000	1.000000	10.000000	0.685300	7.491167	7.487267	0.661400	0.356600	0.541000	NaN	NaN	NaN	0.861254	10.868314	13.019069	0.769405	0.484215	0.808730	NaN	NaN	NaN	0.815330	5.676264	0.035821	0.469198	0.118266	1.000000	0.232730	0.071048	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2	DCUP_HUMAN	DCUP_HUMAN	Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2	100.000000	0.007900	40769.200000	2.000000	6.000000	6.000000	Spectrum66686 scans:41089,	MEANGLGPQGFPELKNDTFLR	M[+42]EANGLGPQGFPELKNDTFLR	-	A	99.400000	62.600000	53.400000	55.100000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2421.210000	2.000000	-0.000580	-0.240000	1.000000	21.000000	2.913033	1.123967	0.604500	6.055100	4.346950	0.602800	NaN	NaN	NaN	3.660969	1.630670	1.051122	7.043885	5.902573	0.901114	NaN	NaN	NaN	5.352427	3.766622	0.194860	0.328405	0.371519	0.438294	0.232496	0.071027	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2	DCUP_HUMAN	DCUP_HUMAN	Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2	100.000000	0.007900	40769.200000	2.000000	6.000000	6.000000	Spectrum64185 scans:38271,	MEANGLGPQGFPELKNDTFLR	NaN	-	A	99.600000	48.900000	52.600000	44.100000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2437.200000	3.000000	-0.005900	-2.400000	1.000000	21.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2	DCUP_HUMAN	DCUP_HUMAN	Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2	100.000000	0.004630	40769.200000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction6A.37540.37540.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37540"	MEANGLGPQGFPELKNDTFLR	NaN	-	A	99.000000	60.800000	58.300000	55.800000	Oxidation (+16), Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2429.230000	2.000000	-0.003700	-1.500000	1.000000	21.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Protein flightless-1 homolog OS=Homo sapiens GN=FLII PE=1 SV=2	FLII_HUMAN	FLII_HUMAN	Protein flightless-1 homolog OS=Homo sapiens GN=FLII PE=1 SV=2	100.000000	0.005010	144737.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33773.33773.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33773"	MEATGVLPFVR	NaN	-	G	99.700000	61.100000	52.700000	46.400000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1286.660000	2.000000	-0.000270	-0.210000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Protein flightless-1 homolog OS=Homo sapiens GN=FLII PE=1 SV=2	FLII_HUMAN	FLII_HUMAN	Protein flightless-1 homolog OS=Homo sapiens GN=FLII PE=1 SV=2	100.000000	0.005010	144737.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33802.33802.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33802"	MEATGVLPFVR	NaN	-	G	99.700000	74.100000	52.700000	58.300000	Oxidation (+16), Acetyl (+42)	1276.650000	2.000000	0.002000	1.600000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1	OTU6B_HUMAN	OTU6B_HUMAN	OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1	97.400000	0.011500	33795.300000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.51417.51417.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=51417"	MEAVLTEELDEEEQLLR	M[+42]EAVLTEELDEEEQLLR	-	R	99.700000	93.400000	53.500000	84.000000	Acetyl (+42)	2087.990000	2.000000	-0.002600	-1.300000	1.000000	17.000000	0.584600	0.226800	0.387800	NaN	NaN	NaN	NaN	NaN	NaN	0.734699	0.329045	0.674318	NaN	NaN	NaN	NaN	NaN	NaN	0.734699	0.329045	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1	OTU6B_HUMAN	OTU6B_HUMAN	OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1	97.400000	0.011500	33795.300000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.51426.51426.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=51426"	MEAVLTEELDEEEQLLR	M[+42]EAVLTEELDEEEQLLR	-	R	99.700000	100.000000	54.000000	90.300000	Acetyl (+42), Label:13C(6)15N(4) (+10)	2098.000000	2.000000	0.000760	0.360000	1.000000	17.000000	0.584600	0.226800	0.387800	NaN	NaN	NaN	NaN	NaN	NaN	0.734699	0.329045	0.674318	NaN	NaN	NaN	NaN	NaN	NaN	0.734699	0.329045	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1	OTU6B_HUMAN	OTU6B_HUMAN	OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1	97.400000	0.011500	33795.300000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.44286.44286.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44286"	MEAVLTEELDEEEQLLR	NaN	-	R	99.700000	109.000000	52.500000	101.000000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	2113.990000	2.000000	-0.011000	-5.300000	1.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1	OTU6B_HUMAN	OTU6B_HUMAN	OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1	100.000000	0.005270	33795.300000	1.000000	3.000000	4.000000	Spectrum71900 scans:47860,	MEAVLTEELDEEEQLLR	NaN	-	R	99.700000	88.800000	49.800000	75.600000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	2110.010000	2.000000	-0.002900	-1.400000	1.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1	OTU6B_HUMAN	OTU6B_HUMAN	OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1	100.000000	0.005270	33795.300000	1.000000	3.000000	4.000000	Spectrum71884 scans:47839,	MEAVLTEELDEEEQLLR	NaN	-	R	99.700000	97.300000	48.600000	86.900000	Oxidation (+16), Acetyl (+42)	2103.980000	2.000000	-0.004200	-2.000000	1.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=4 SV=2	A8MUM1_HUMAN	A8MUM1_HUMAN	Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=4 SV=2	100.000000	0.006590	46301.700000	2.000000	5.000000	5.000000	Spectrum66321 scans:40667,	MEDDAPVIYGLEFQAR	NaN	-	A	99.700000	86.500000	46.400000	86.000000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1920.880000	2.000000	-0.005200	-2.700000	1.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=4 SV=2	A8MUM1_HUMAN	A8MUM1_HUMAN	Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=4 SV=2	100.000000	0.006590	46301.700000	2.000000	5.000000	5.000000	Spectrum66348 scans:40699,	MEDDAPVIYGLEFQAR	NaN	-	A	99.700000	78.200000	46.100000	78.200000	Oxidation (+16), Acetyl (+42)	1910.870000	2.000000	-0.002900	-1.500000	1.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribosomal L1 domain-containing protein 1 (Fragment) OS=Homo sapiens GN=RSL1D1 PE=4 SV=1	tr|J3QSV6|J3QSV6_HUMAN	J3QSV6_HUMAN	Ribosomal L1 domain-containing protein 1 (Fragment) OS=Homo sapiens GN=RSL1D1 PE=1 SV=1	100.000000	0.002630	0.000000	2.000000	2.000000	2.000000	Spectrum8434 scans:31447,	MEDSASASLSSAAATGTSTSTPAAPTAR	NaN	-	K	99.700000	105.000000	47.800000	102.000000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	2660.210000	3.000000	-0.006600	-2.500000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of Nucleophosmin OS=Homo sapiens GN=NPM1	sp|P06748-3|NPM_HUMAN	NPM_HUMAN	Isoform 3 of Nucleophosmin OS=Homo sapiens GN=NPM1	100.000000	0.005270	28382.500000	2.000000	3.000000	4.000000	Spectrum6019 scans:25163,	MEDSMDMDMSPLRPQ	NaN	-	N	99.700000	41.800000	29.100000	41.800000	Oxidation (+16), Acetyl (+42), Oxidation (+16), Oxidation (+16), Oxidation (+16)	1887.700000	3.000000	0.001600	0.870000	1.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of Nucleophosmin OS=Homo sapiens GN=NPM1	sp|P06748|NPM_HUMAN	NPM_HUMAN	Nucleophosmin OS=Homo sapiens GN=NPM1 PE=1 SV=2	100.000000	0.005270	32557.400000	2.000000	3.000000	4.000000	Spectrum8848 scans:32648,	MEDSMDMDMSPLRPQNY	NaN	-	L	99.700000	22.500000	28.700000	22.500000	Oxidation (+16), Acetyl (+42), Oxidation (+16), Oxidation (+16), Oxidation (+16), Label:13C(6)15N(4) (+10)	2174.810000	3.000000	-0.001500	-0.670000	1.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of Nucleophosmin OS=Homo sapiens GN=NPM1	sp|P06748|NPM_HUMAN	NPM_HUMAN	Nucleophosmin OS=Homo sapiens GN=NPM1 PE=1 SV=2	100.000000	0.005270	32557.400000	2.000000	3.000000	4.000000	Spectrum8949 scans:32837,	MEDSMDMDMSPLRPQNY	NaN	-	L	99.700000	32.800000	28.600000	32.800000	Oxidation (+16), Acetyl (+42), Oxidation (+16), Oxidation (+16), Oxidation (+16)	2164.800000	3.000000	-0.003600	-1.600000	1.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Cyclin-dependent kinase 1 OS=Homo sapiens GN=CDK1 PE=1 SV=3	sp|P06493|CDK1_HUMAN	CDK1_HUMAN	Cyclin-dependent kinase 1 OS=Homo sapiens GN=CDK1 PE=1 SV=3	100.000000	0.005760	34079.200000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.37541.37541.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37541"	MEDYTKIEKIGEGTYGVVY	M[+42]EDYTKIEKIGEGTYGVVY	-	K	99.200000	58.300000	57.200000	20.500000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	2308.150000	2.000000	-0.002900	-1.200000	1.000000	19.000000	10.459300	3.393733	0.519433	NaN	NaN	NaN	NaN	NaN	NaN	13.144778	4.923687	0.903205	NaN	NaN	NaN	NaN	NaN	NaN	13.144778	4.923687	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 2 of 26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4	sp|P43686|PRS6B_HUMAN	PRS6B_HUMAN	26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2	98.000000	0.002360	47349.700000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64932.64932.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64932"	MEEIGILVEKAQDEIPALSVSR	M[+42]EEIGILVEKAQDEIPALSVSR	-	P	99.700000	113.000000	60.200000	110.000000	Acetyl (+42), Dimethyl (+28)	2496.320000	2.000000	0.001600	0.660000	1.000000	22.000000	28.208267	6.320733	0.287133	NaN	NaN	0.289550	NaN	NaN	NaN	35.450882	9.170229	0.499275	NaN	NaN	0.432843	NaN	NaN	NaN	35.450882	9.170229	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of 26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4	sp|P43686|PRS6B_HUMAN	PRS6B_HUMAN	26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2	96.800000	0.007510	47349.700000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.48625.48625.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=48625"	MEEIGILVEKAQDEIPALSVSR	NaN	-	P	98.800000	69.500000	59.900000	69.500000	Oxidation (+16), Acetyl (+42), Dimethyl (+28)	2512.310000	3.000000	-0.001800	-0.710000	1.000000	22.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	MIP18 family protein FAM96A OS=Homo sapiens GN=FAM96A PE=1 SV=1	sp|Q9H5X1|FA96A_HUMAN	FA96A_HUMAN	MIP18 family protein FAM96A OS=Homo sapiens GN=FAM96A PE=1 SV=1	98.600000	0.002310	18337.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.46974.46974.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46974"	MEEKALEVYDLIR	M[+42]EEKALEVYDLIR	I	T	99.700000	72.800000	55.400000	60.400000	Acetyl (+42), Dimethyl (+28)	1677.860000	2.000000	-0.002600	-1.500000	33.000000	45.000000	9.148400	3.302000	0.360900	13.718200	7.261600	0.530900	NaN	NaN	NaN	11.497298	4.790599	0.627543	15.958354	9.860276	0.793632	NaN	NaN	NaN	13.727826	7.325437	0.000000	0.212081	0.000000	1.000000	0.225471	0.070207	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Leupaxin OS=Homo sapiens GN=LPXN PE=4 SV=1	E9PNX9_HUMAN	E9PNX9_HUMAN	Leupaxin OS=Homo sapiens GN=LPXN PE=4 SV=1	97.400000	0.008640	11836.300000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.52412.52412.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=52412"	MEELDALLEELER	NaN	-	S	99.700000	92.700000	50.800000	76.000000	Oxidation (+16), Acetyl (+42)	1646.770000	2.000000	-0.002000	-1.200000	1.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Leupaxin OS=Homo sapiens GN=LPXN PE=4 SV=1	E9PNX9_HUMAN	E9PNX9_HUMAN	Leupaxin OS=Homo sapiens GN=LPXN PE=4 SV=1	98.900000	0.010000	11836.300000	1.000000	3.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.56989.56989.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=56989"	MEELDALLEELER	M[+42]EELDALLEELER	-	S	99.700000	69.700000	51.600000	58.900000	Acetyl (+42)	1630.770000	2.000000	-0.002500	-1.500000	1.000000	13.000000	NaN	NaN	NaN	0.634150	0.070650	0.110350	NaN	NaN	NaN	NaN	NaN	NaN	0.737705	0.095933	0.164960	NaN	NaN	NaN	0.737705	0.095933	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Leupaxin OS=Homo sapiens GN=LPXN PE=4 SV=1	E9PNX9_HUMAN	E9PNX9_HUMAN	Leupaxin OS=Homo sapiens GN=LPXN PE=4 SV=1	98.900000	0.010000	11836.300000	1.000000	3.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.53235.53235.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=53235"	MEELDALLEELER	NaN	-	S	99.700000	103.000000	51.700000	88.100000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1656.790000	2.000000	0.006000	3.600000	1.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1	sp|O95155|UBE4B_HUMAN	UBE4B_HUMAN	Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1	99.000000	0.007510	146171.500000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.28250.28250.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28250"	MEELSADEIR	NaN	-	R	99.700000	73.500000	45.500000	50.300000	Oxidation (+16), Acetyl (+42)	1249.550000	2.000000	-0.004300	-3.400000	1.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1	sp|O95155-4|UBE4B_HUMAN	UBE4B_HUMAN	Isoform 4 of Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B	99.000000	0.007510	0.000000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.28225.28225.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28225"	MEELSADEIR	M[+42]EELSADEIR	-	R	99.700000	57.100000	47.000000	45.400000	Acetyl (+42)	1233.560000	2.000000	0.000390	0.320000	0.000000	0.000000	5.868500	21.855500	48.428800	0.409950	0.061950	0.151250	NaN	NaN	NaN	7.375267	31.708337	84.209355	0.476894	0.084120	0.226101	NaN	NaN	NaN	3.926081	15.896229	0.458893	0.494645	1.000000	1.000000	0.224378	0.070101	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1	sp|O95155|UBE4B_HUMAN	UBE4B_HUMAN	Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1	98.900000	0.008960	146171.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.24523.24523.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24523"	MEELSADEIR	M[+42]EELSADEIR	-	R	99.500000	58.800000	47.500000	45.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1243.570000	2.000000	0.002300	1.900000	1.000000	10.000000	5.868500	21.855500	48.428800	0.409950	0.061950	0.151250	NaN	NaN	NaN	7.375267	31.708337	84.209355	0.476894	0.084120	0.226101	NaN	NaN	NaN	3.926081	15.896229	0.458893	0.494645	1.000000	0.580459	0.224160	0.069931	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Fragile X mental retardation protein 1 OS=Homo sapiens GN=FMR1 PE=4 SV=1	G3V0J0_HUMAN	G3V0J0_HUMAN	Fragile X mental retardation 1, isoform CRA_e OS=Homo sapiens GN=FMR1 PE=4 SV=1	96.700000	0.002500	66767.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.36772.36772.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36772"	MEELVVEVR	M[+42]EELVVEVR	-	G	99.200000	50.200000	51.800000	31.300000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1154.590000	2.000000	-0.000460	-0.400000	1.000000	9.000000	1.800000	17.722433	9.400733	1.034300	0.203050	0.182800	NaN	NaN	NaN	2.262159	25.712013	16.346259	1.203199	0.275715	0.273264	NaN	NaN	NaN	1.732679	12.993864	0.188804	0.482452	0.524119	1.000000	0.223943	0.069889	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	CapZ-interacting protein OS=Homo sapiens GN=RCSD1 PE=2 SV=1	sp|Q6JBY9|CPZIP_HUMAN	CPZIP_HUMAN	CapZ-interacting protein OS=Homo sapiens GN=RCSD1 PE=1 SV=1	99.900000	0.002360	44485.100000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.41933.41933.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41933"	MEERPAETNANVDNSASPSVAQLAGR	M[+42]EERPAETNANVDNSASPSVAQLAGR	-	F	99.700000	98.000000	53.400000	98.000000	Acetyl (+42)	2755.270000	3.000000	-0.015000	-5.400000	1.000000	26.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Box C/D snoRNA protein 1 OS=Homo sapiens GN=ZNHIT6	sp|Q9NWK9-2|BCD1_HUMAN	BCD1_HUMAN	Isoform 2 of Box C/D snoRNA protein 1 OS=Homo sapiens GN=ZNHIT6	98.800000	0.001320	49468.900000	1.000000	1.000000	1.000000	Spectrum52936 scans:24930,	MEFAAENEGKSGGGLHSVAEGVR	M[+42]EFAAENEGKSGGGLHSVAEGVR	-	L	99.700000	50.400000	52.100000	46.400000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2411.180000	3.000000	-0.000950	-0.390000	1.000000	23.000000	NaN	NaN	NaN	0.063000	0.203100	9.827500	NaN	NaN	NaN	NaN	NaN	NaN	0.073288	0.275782	14.690934	NaN	NaN	NaN	0.073288	0.275782	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Myotubularin-related protein 9 OS=Homo sapiens GN=MTMR9 PE=1 SV=1	MTMR9_HUMAN	MTMR9_HUMAN	Myotubularin-related protein 9 OS=Homo sapiens GN=MTMR9 PE=1 SV=1	98.900000	0.007510	63445.500000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38870.38870.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38870"	MEFAELIKTPR	M[+42]EFAELIKTPR	-	V	99.700000	73.000000	54.600000	57.900000	Acetyl (+42), Dimethyl (+28)	1403.750000	2.000000	-0.002900	-2.100000	1.000000	11.000000	0.089300	0.314400	3.521900	15.530400	3.815500	0.215400	NaN	NaN	NaN	0.112228	0.456137	6.123978	18.066482	5.180936	0.321997	NaN	NaN	NaN	9.089355	2.818536	0.492856	0.444095	1.000000	0.846709	0.222650	0.069826	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Myotubularin-related protein 9 OS=Homo sapiens GN=MTMR9 PE=1 SV=1	MTMR9_HUMAN	MTMR9_HUMAN	Myotubularin-related protein 9 OS=Homo sapiens GN=MTMR9 PE=1 SV=1	99.000000	0.004480	63445.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.33019.33019.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33019"	MEFAELIKTPR	M[+42]EFAELIKTPR	-	V	99.700000	86.900000	55.100000	77.300000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1421.770000	2.000000	-0.001100	-0.780000	1.000000	11.000000	0.089300	0.314400	3.521900	15.530400	3.815500	0.215400	NaN	NaN	NaN	0.112228	0.456137	6.123978	18.066482	5.180936	0.321997	NaN	NaN	NaN	9.089355	2.818536	0.492856	0.444095	1.000000	0.549772	0.222436	0.069805	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.086400	60327.200000	3.000000	8.000000	30.000000	Nsco_Tails_biological_replicate1_apoptosis.33835.33835.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33835"	MEGPLSVFGDR	NaN	-	S	99.700000	87.700000	48.200000	68.200000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1274.580000	2.000000	-0.000059	-0.046000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.030700	60327.200000	3.000000	9.000000	13.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64769.64769.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64769"	MEGPLSVFGDR	M[+42]EGPLSVFGDR	-	S	99.700000	95.200000	49.200000	82.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1258.590000	2.000000	0.000740	0.590000	1.000000	11.000000	0.578333	0.296800	0.512733	0.655100	0.459400	0.700950	NaN	NaN	NaN	0.726823	0.430603	0.891555	0.762076	0.623803	1.047836	NaN	NaN	NaN	0.744450	0.527203	0.015071	0.115369	0.017007	0.218760	0.221584	0.069742	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.051400	60327.200000	5.000000	10.000000	39.000000	Spectrum21167 scans:24629,	MEGPLSVFGDR	NaN	-	S	99.700000	88.100000	45.800000	65.900000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	1270.600000	2.000000	-0.000033	-0.026000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.363000	60327.200000	1.000000	6.000000	145.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.41307.41307.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41307"	MEGPLSVFGDR	M[+42]EGPLSVFGDR	-	S	99.700000	102.000000	48.800000	82.700000	Acetyl (+42)	1248.580000	2.000000	-0.000270	-0.220000	1.000000	11.000000	0.578333	0.296800	0.512733	0.655100	0.459400	0.700950	NaN	NaN	NaN	0.726823	0.430603	0.891555	0.762076	0.623803	1.047836	NaN	NaN	NaN	0.744450	0.527203	0.015071	0.115369	0.068629	0.218522	0.220738	0.069700	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	99.400000	0.118000	60327.200000	1.000000	3.000000	11.000000	Nsco_Tails_biological_replicate_3_fraction5A.25237.25237.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25237"	MEGPLSVFGDR	NaN	-	S	99.700000	88.100000	47.700000	62.900000	Oxidation (+16), Acetyl (+42)	1264.580000	2.000000	-0.000690	-0.550000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	99.900000	0.278000	60327.200000	1.000000	6.000000	62.000000	Nsco_Tails_biological_replicate2_apoptosis.35311.35311.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35311"	MEGPLSVFGDR	M[+42]EGPLSVFGDR	-	S	99.700000	102.000000	50.200000	85.500000	Acetyl (+42), Label:13C(6) (+6)	1254.600000	2.000000	-0.000310	-0.250000	1.000000	11.000000	0.578333	0.296800	0.512733	0.655100	0.459400	0.700950	NaN	NaN	NaN	0.726823	0.430603	0.891555	0.762076	0.623803	1.047836	NaN	NaN	NaN	0.744450	0.527203	0.015071	0.115369	0.068449	0.246509	0.220108	0.069616	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens GN=UBA6 PE=1 SV=1	sp|A0AVT1|UBA6_HUMAN	UBA6_HUMAN	Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens GN=UBA6 PE=1 SV=1	96.800000	0.010800	117955.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.9837.9837.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9837"	MEGSEPVAAH	NaN	-	Q	98.600000	43.200000	40.900000	38.000000	Oxidation (+16), Acetyl (+42)	1084.450000	2.000000	-0.004100	-3.800000	1.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum11267 scans:40112,	MEKTLETVPLER	M[+42]EKTLETVPLER	-	K	98.700000	39.400000	51.600000	22.300000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1524.850000	3.000000	0.003100	2.000000	1.000000	12.000000	6.543133	7.917900	1.891267	61.912100	72.316400	1.096300	NaN	NaN	NaN	8.223116	11.487426	3.288587	72.022219	98.195940	1.638837	NaN	NaN	NaN	40.122667	54.841683	0.061879	0.000000	0.073838	0.000000	0.219690	0.069428	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.022400	37412.300000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis.16718.16718.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16718"	MEKTLETVPLER	NaN	-	K	98.600000	53.000000	56.000000	46.200000	Oxidation (+16), Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1540.840000	2.000000	-0.001200	-0.780000	1.000000	12.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Amidophosphoribosyltransferase OS=Homo sapiens GN=PPAT PE=1 SV=1	PUR1_HUMAN	PUR1_HUMAN	Amidophosphoribosyltransferase OS=Homo sapiens GN=PPAT PE=1 SV=1	98.300000	0.005010	57381.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38898.38898.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38898"	MELEELGIR	M[+42]ELEELGIR	-	E	99.300000	56.100000	51.200000	30.900000	Acetyl (+42)	1130.570000	2.000000	0.003000	2.600000	1.000000	9.000000	4.264500	1.440200	0.120300	0.776800	0.218450	0.299200	NaN	NaN	NaN	5.359432	2.089467	0.209181	0.903650	0.296626	0.447268	NaN	NaN	NaN	3.131541	1.193046	0.393660	0.410224	0.442215	1.000000	0.219273	0.069282	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Amidophosphoribosyltransferase OS=Homo sapiens GN=PPAT PE=1 SV=1	PUR1_HUMAN	PUR1_HUMAN	Amidophosphoribosyltransferase OS=Homo sapiens GN=PPAT PE=1 SV=1	98.300000	0.005010	57381.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38886.38886.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38886"	MELEELGIR	M[+42]ELEELGIR	-	E	99.600000	60.800000	51.400000	34.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1140.580000	2.000000	0.003800	3.300000	1.000000	9.000000	4.264500	1.440200	0.120300	0.776800	0.218450	0.299200	NaN	NaN	NaN	5.359432	2.089467	0.209181	0.903650	0.296626	0.447268	NaN	NaN	NaN	3.131541	1.193046	0.393660	0.410224	0.830901	0.863236	0.219066	0.069220	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytokine receptor-like factor 3 OS=Homo sapiens GN=CRLF3 PE=1 SV=2	CRLF3_HUMAN	CRLF3_HUMAN	Cytokine receptor-like factor 3 OS=Homo sapiens GN=CRLF3 PE=1 SV=2	98.800000	0.002630	49747.700000	1.000000	2.000000	2.000000	Spectrum72587 scans:48991,	MELEPELLLQEAR	M[+42]ELEPELLLQEAR	A	E	99.700000	82.300000	50.500000	64.600000	Acetyl (+42)	1611.820000	2.000000	-0.002600	-1.600000	5.000000	17.000000	0.719100	0.340100	0.473000	0.750950	0.418850	0.557150	NaN	NaN	NaN	0.903733	0.493423	0.822466	0.873579	0.568742	0.832872	NaN	NaN	NaN	0.888656	0.531082	0.010800	0.045068	0.022782	0.094779	0.218858	0.069199	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Cytokine receptor-like factor 3 OS=Homo sapiens GN=CRLF3 PE=1 SV=2	CRLF3_HUMAN	CRLF3_HUMAN	Cytokine receptor-like factor 3 OS=Homo sapiens GN=CRLF3 PE=1 SV=2	100.000000	0.012500	49747.700000	1.000000	4.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40634.40634.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40634"	MELEPELLLQEAR	NaN	A	E	99.700000	71.600000	54.200000	60.200000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1637.820000	2.000000	-0.002500	-1.500000	5.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Cytokine receptor-like factor 3 OS=Homo sapiens GN=CRLF3 PE=1 SV=2	CRLF3_HUMAN	CRLF3_HUMAN	Cytokine receptor-like factor 3 OS=Homo sapiens GN=CRLF3 PE=1 SV=2	99.900000	0.017900	49747.700000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.38927.38927.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38927"	MELEPELLLQEAR	M[+42]ELEPELLLQEAR	A	E	99.700000	71.400000	54.800000	58.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1621.830000	2.000000	-0.000160	-0.097000	5.000000	17.000000	0.719100	0.340100	0.473000	0.750950	0.418850	0.557150	NaN	NaN	NaN	0.903733	0.493423	0.822466	0.873579	0.568742	0.832872	NaN	NaN	NaN	0.888656	0.531082	0.010800	0.045068	0.013266	0.229641	0.217011	0.069137	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Cytokine receptor-like factor 3 OS=Homo sapiens GN=CRLF3 PE=1 SV=2	CRLF3_HUMAN	CRLF3_HUMAN	Cytokine receptor-like factor 3 OS=Homo sapiens GN=CRLF3 PE=1 SV=2	99.900000	0.017900	49747.700000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.34381.34381.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34381"	MELEPELLLQEAR	NaN	A	E	99.700000	84.800000	54.000000	67.400000	Oxidation (+16), Acetyl (+42)	1627.810000	2.000000	-0.000550	-0.340000	5.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2	sp|O95551-2|TYDP2_HUMAN	TYDP2_HUMAN	Isoform 2 of Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2	97.600000	0.004670	44321.600000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.37420.37420.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37420"	MELGSCLEGGR	NaN	K	E	99.100000	51.200000	44.400000	43.700000	Oxidation (+16), Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1275.550000	2.000000	0.001700	1.400000	31.000000	41.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2	sp|O95551-2|TYDP2_HUMAN	TYDP2_HUMAN	Isoform 2 of Tyrosyl-DNA phosphodiesterase 2 OS=Homo sapiens GN=TDP2	97.600000	0.004670	44321.600000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.37461.37461.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37461"	MELGSCLEGGR	NaN	K	E	99.700000	53.300000	43.600000	40.000000	Oxidation (+16), Acetyl (+42), Carbamidomethyl (+57)	1265.540000	2.000000	-0.001400	-1.100000	31.000000	41.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	IMB1_HUMAN	IMB1_HUMAN	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	100.000000	0.062600	97153.300000	2.000000	8.000000	25.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.51798.51798.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=51798"	MELITILEK	M[+42]ELITILEK	-	T	99.700000	75.400000	53.700000	41.600000	Acetyl (+42), Dimethyl (+28)	1158.670000	2.000000	0.008200	7.100000	1.000000	9.000000	42.208900	25.236500	0.546800	NaN	NaN	1.112350	NaN	NaN	NaN	53.046249	36.613551	0.950791	NaN	NaN	1.662830	NaN	NaN	NaN	53.046249	36.613551	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	IMB1_HUMAN	IMB1_HUMAN	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	100.000000	0.062600	97153.300000	2.000000	8.000000	25.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.51758.51758.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=51758"	MELITILEK	M[+42]ELITILEK	-	T	99.700000	63.200000	53.900000	48.100000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1166.670000	2.000000	0.000230	0.190000	1.000000	9.000000	42.208900	25.236500	0.546800	NaN	NaN	1.112350	NaN	NaN	NaN	53.046249	36.613551	0.950791	NaN	NaN	1.662830	NaN	NaN	NaN	53.046249	36.613551	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	IMB1_HUMAN	IMB1_HUMAN	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	100.000000	0.043200	97153.300000	2.000000	7.000000	15.000000	Nsco_Tails_biological_replicate1_apoptosis.54131.54131.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=54131"	MELITILEKTVSPDR	M[+42]ELITILEKTVSPDR	-	L	99.700000	77.400000	57.700000	66.900000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1824.030000	2.000000	-0.003500	-1.900000	1.000000	15.000000	NaN	NaN	0.357433	1044.850300	777.106300	0.648350	NaN	NaN	NaN	NaN	NaN	0.621515	1215.472212	1055.205785	0.969205	NaN	NaN	NaN	1215.472212	1055.205785	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	IMB1_HUMAN	IMB1_HUMAN	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	100.000000	0.043200	97153.300000	2.000000	7.000000	15.000000	Nsco_Tails_biological_replicate1_apoptosis.49341.49341.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=49341"	MELITILEKTVSPDR	NaN	-	L	99.700000	92.800000	57.300000	78.900000	Oxidation (+16), Acetyl (+42), Dimethyl (+28)	1829.980000	2.000000	-0.002100	-1.100000	1.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	IMB1_HUMAN	IMB1_HUMAN	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	100.000000	0.043200	97153.300000	2.000000	7.000000	15.000000	Nsco_Tails_biological_replicate1_apoptosis.49345.49345.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=49345"	MELITILEKTVSPDR	NaN	-	L	99.700000	98.400000	57.600000	84.900000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1848.010000	2.000000	0.001800	0.990000	1.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	IMB1_HUMAN	IMB1_HUMAN	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	100.000000	0.062600	97153.300000	2.000000	8.000000	25.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.55083.55083.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=55083"	MELITILEKTVSPDR	M[+42]ELITILEKTVSPDR	-	L	99.700000	79.700000	57.700000	64.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1832.010000	2.000000	-0.003300	-1.800000	1.000000	15.000000	NaN	NaN	0.357433	1044.850300	777.106300	0.648350	NaN	NaN	NaN	NaN	NaN	0.621515	1215.472212	1055.205785	0.969205	NaN	NaN	NaN	1215.472212	1055.205785	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	IMB1_HUMAN	IMB1_HUMAN	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	100.000000	0.062600	97153.300000	2.000000	8.000000	25.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.55156.55156.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=55156"	MELITILEKTVSPDR	M[+42]ELITILEKTVSPDR	-	L	99.700000	81.800000	57.500000	67.100000	Acetyl (+42), Dimethyl (+28)	1813.990000	2.000000	0.001300	0.730000	1.000000	15.000000	NaN	NaN	0.357433	1044.850300	777.106300	0.648350	NaN	NaN	NaN	NaN	NaN	0.621515	1215.472212	1055.205785	0.969205	NaN	NaN	NaN	1215.472212	1055.205785	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	IMB1_HUMAN	IMB1_HUMAN	Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2	100.000000	0.062600	97153.300000	2.000000	8.000000	25.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.50378.50378.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=50378"	MELITILEKTVSPDR	NaN	-	L	99.700000	93.800000	57.800000	84.900000	Oxidation (+16), Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1840.020000	2.000000	-0.002100	-1.100000	1.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	sp|Q9H3K6-2|BOLA2_HUMAN	BOLA2_HUMAN	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	100.000000	0.011900	6823.700000	2.000000	6.000000	9.000000	Spectrum62243 scans:36067,	MELSAEYLR	M[+42]ELSAEYLR	-	E	99.300000	62.200000	47.200000	40.900000	Acetyl (+42), Label:13C(6) (+6)	1158.570000	2.000000	0.001100	0.970000	1.000000	9.000000	0.687600	0.276567	0.402233	0.620600	0.418700	0.674750	NaN	NaN	NaN	0.864145	0.401248	0.699415	0.721943	0.568538	1.008670	NaN	NaN	NaN	0.793044	0.484893	0.056925	0.108748	0.231027	0.639587	0.212038	0.068767	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	sp|Q9H3K6-2|BOLA2_HUMAN	BOLA2_HUMAN	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	100.000000	0.011900	6823.700000	2.000000	6.000000	9.000000	Spectrum62222 scans:36041,	MELSAEYLR	M[+42]ELSAEYLR	-	E	99.400000	56.300000	46.300000	42.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1162.560000	2.000000	0.000062	0.053000	1.000000	9.000000	0.687600	0.276567	0.402233	0.620600	0.418700	0.674750	NaN	NaN	NaN	0.864145	0.401248	0.699415	0.721943	0.568538	1.008670	NaN	NaN	NaN	0.793044	0.484893	0.056925	0.108748	0.230757	1.000000	0.211844	0.068747	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	sp|Q9H3K6-2|BOLA2_HUMAN	BOLA2_HUMAN	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	100.000000	0.011900	6823.700000	2.000000	6.000000	9.000000	Spectrum31175 scans:19703,	MELSAEYLR	NaN	-	E	99.500000	55.100000	44.800000	29.700000	Oxidation (+16), Acetyl (+42)	1168.540000	2.000000	-0.000500	-0.430000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	sp|Q9H3K6-2|BOLA2_HUMAN	BOLA2_HUMAN	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	100.000000	0.011900	6823.700000	2.000000	6.000000	9.000000	Spectrum31176 scans:19706,	MELSAEYLR	NaN	-	E	99.700000	74.400000	46.400000	41.400000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	1174.560000	2.000000	0.000850	0.720000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	sp|Q9H3K6-2|BOLA2_HUMAN	BOLA2_HUMAN	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	98.600000	0.007510	6823.700000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.34362.34362.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34362"	MELSAEYLR	M[+42]ELSAEYLR	-	E	99.600000	54.500000	49.300000	38.900000	Acetyl (+42)	1152.550000	2.000000	0.000440	0.380000	1.000000	9.000000	0.687600	0.276567	0.402233	0.620600	0.418700	0.674750	NaN	NaN	NaN	0.864145	0.401248	0.699415	0.721943	0.568538	1.008670	NaN	NaN	NaN	0.793044	0.484893	0.056925	0.108748	0.124231	0.394724	0.211263	0.068665	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	sp|Q9H3K6-2|BOLA2_HUMAN	BOLA2_HUMAN	Isoform 2 of BolA-like protein 2 OS=Homo sapiens GN=BOLA2	99.800000	0.009250	6823.700000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction6A.27324.27324.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27324"	MELSAEYLR	NaN	-	E	99.000000	56.300000	48.700000	41.900000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1178.550000	2.000000	0.002000	1.700000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Chromobox protein homolog 6 OS=Homo sapiens GN=CBX6 PE=1 SV=1	B0QXZ6_HUMAN	B0QXZ6_HUMAN	Chromobox homolog 6 OS=Homo sapiens GN=CBX6 PE=4 SV=1	95.500000	0.001320	41901.400000	1.000000	1.000000	1.000000	Spectrum6853 scans:27172,	MELSAVGER	NaN	-	V	98.900000	47.500000	44.700000	23.300000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1058.490000	2.000000	-0.000230	-0.220000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1	ROA0_HUMAN	ROA0_HUMAN	Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1	100.000000	0.005270	30822.500000	3.000000	3.000000	4.000000	Spectrum21142 scans:23926,	MENSQLCKLF	NaN	-	I	98.900000	49.000000	46.300000	31.900000	Oxidation (+16), Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36)	1362.640000	2.000000	-0.001000	-0.750000	1.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1	ROA0_HUMAN	ROA0_HUMAN	Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1	100.000000	0.017500	30822.500000	2.000000	3.000000	7.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.34380.34380.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34380"	MENSQLCKLF	NaN	-	I	99.700000	60.900000	49.200000	52.900000	Oxidation (+16), Acetyl (+42), Carbamidomethyl (+57), Dimethyl (+28)	1354.630000	2.000000	0.002600	1.900000	1.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1	ROA0_HUMAN	ROA0_HUMAN	Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1	100.000000	0.017500	30822.500000	2.000000	3.000000	7.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.39730.39730.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39730"	MENSQLCKLFIGGLNVQTSESGLR	NaN	-	G	99.600000	81.100000	58.600000	62.600000	Oxidation (+16), Acetyl (+42), Carbamidomethyl (+57), Dimethyl (+28)	2766.370000	3.000000	-0.000140	-0.052000	1.000000	24.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Plastin-1 OS=Homo sapiens GN=PLS1 PE=1 SV=2	PLSI_HUMAN	PLSI_HUMAN	Plastin-1 OS=Homo sapiens GN=PLS1 PE=1 SV=2	98.500000	0.007080	70239.200000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.26194.26194.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26194"	MENSTTTISR	M[+42]ENSTTTISR	-	E	99.700000	61.500000	47.600000	57.900000	Acetyl (+42)	1180.540000	2.000000	-0.000390	-0.330000	1.000000	10.000000	3.682367	NaN	NaN	34.818700	0.547300	1.278500	NaN	NaN	NaN	4.627833	NaN	NaN	40.504522	0.743160	1.911204	NaN	NaN	NaN	22.566178	0.743160	0.224068	NaN	1.000000	NaN	0.209541	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Plastin-1 OS=Homo sapiens GN=PLS1 PE=1 SV=2	PLSI_HUMAN	PLSI_HUMAN	Plastin-1 OS=Homo sapiens GN=PLS1 PE=1 SV=2	98.100000	0.007000	70239.200000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.15852.15852.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15852"	MENSTTTISR	NaN	-	E	99.500000	60.700000	47.300000	49.900000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1206.550000	2.000000	0.002800	2.300000	1.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Plastin-1 OS=Homo sapiens GN=PLS1 PE=1 SV=2	PLSI_HUMAN	PLSI_HUMAN	Plastin-1 OS=Homo sapiens GN=PLS1 PE=1 SV=2	98.100000	0.007000	70239.200000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.15841.15841.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15841"	MENSTTTISR	NaN	-	E	99.700000	56.800000	46.100000	49.200000	Oxidation (+16), Acetyl (+42)	1196.530000	2.000000	-0.003800	-3.200000	1.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Caspase-3 subunit p12 OS=Homo sapiens GN=CASP3 PE=4 SV=2	C9JXR7_HUMAN	C9JXR7_HUMAN	Caspase-3 subunit p12 (Fragment) OS=Homo sapiens GN=CASP3 PE=4 SV=2	100.000000	0.005270	13348.300000	3.000000	3.000000	4.000000	Spectrum41159 scans:11398,	MENTENSVDSK	NaN	-	S	99.700000	101.000000	40.500000	89.300000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1346.570000	2.000000	-0.004500	-3.300000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Caspase-3 subunit p12 OS=Homo sapiens GN=CASP3 PE=4 SV=2	A8MVM1_HUMAN	A8MVM1_HUMAN	Caspase-3 subunit p12 OS=Homo sapiens GN=CASP3 PE=4 SV=2	100.000000	0.005270	20491.200000	3.000000	3.000000	4.000000	Spectrum43458 scans:14039,	MENTENSVDSKSIK	NaN	-	N	99.700000	78.600000	49.400000	73.600000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1710.830000	2.000000	0.000021	0.012000	1.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Caspase-3 subunit p12 OS=Homo sapiens GN=CASP3 PE=4 SV=2	A8MVM1_HUMAN	A8MVM1_HUMAN	Caspase-3 subunit p12 OS=Homo sapiens GN=CASP3 PE=4 SV=2	100.000000	0.009250	20491.200000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction6A.14051.14051.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14051"	MENTENSVDSKSIK	M[+42]ENTENSVDSKSIK	-	N	99.500000	60.700000	52.600000	59.000000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	1678.810000	2.000000	-0.000590	-0.350000	1.000000	14.000000	NaN	NaN	NaN	NaN	8.106450	10.171850	NaN	NaN	NaN	NaN	NaN	NaN	NaN	11.007468	15.205695	NaN	NaN	NaN	NaN	11.007468	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Guanine nucleotide exchange factor MSS4 OS=Homo sapiens GN=RABIF PE=1 SV=2	MSS4_HUMAN	MSS4_HUMAN	Guanine nucleotide exchange factor MSS4 OS=Homo sapiens GN=RABIF PE=1 SV=2	97.400000	0.005760	13820.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.20330.20330.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20330"	MEPAEQPSELVSAEGR	NaN	-	N	99.700000	77.600000	48.500000	77.200000	Oxidation (+16), Acetyl (+42)	1786.800000	2.000000	-0.005600	-3.100000	1.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Guanine nucleotide exchange factor MSS4 OS=Homo sapiens GN=RABIF PE=1 SV=2	MSS4_HUMAN	MSS4_HUMAN	Guanine nucleotide exchange factor MSS4 OS=Homo sapiens GN=RABIF PE=1 SV=2	98.000000	0.009440	13820.800000	1.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.47779.47779.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47779"	MEPAEQPSELVSAEGR	M[+42]EPAEQPSELVSAEGR	-	N	99.500000	56.800000	50.000000	56.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1780.810000	2.000000	-0.003300	-1.900000	1.000000	16.000000	NaN	NaN	2.668867	NaN	NaN	2.007400	NaN	NaN	NaN	NaN	NaN	4.640700	NaN	NaN	3.000822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Guanine nucleotide exchange factor MSS4 OS=Homo sapiens GN=RABIF PE=1 SV=2	MSS4_HUMAN	MSS4_HUMAN	Guanine nucleotide exchange factor MSS4 OS=Homo sapiens GN=RABIF PE=1 SV=2	98.000000	0.009440	13820.800000	1.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.47803.47803.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47803"	MEPAEQPSELVSAEGR	M[+42]EPAEQPSELVSAEGR	-	N	99.700000	64.200000	49.700000	64.200000	Acetyl (+42)	1770.810000	2.000000	-0.003500	-2.000000	1.000000	16.000000	NaN	NaN	2.668867	NaN	NaN	2.007400	NaN	NaN	NaN	NaN	NaN	4.640700	NaN	NaN	3.000822	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Guanine nucleotide exchange factor MSS4 OS=Homo sapiens GN=RABIF PE=1 SV=2	MSS4_HUMAN	MSS4_HUMAN	Guanine nucleotide exchange factor MSS4 OS=Homo sapiens GN=RABIF PE=1 SV=2	97.700000	0.002330	13820.800000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.38863.38863.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38863"	MEPAEQPSELVSAEGR	NaN	-	N	99.700000	75.900000	48.700000	75.900000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1796.810000	2.000000	-0.007300	-4.000000	1.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens GN=POLR2I PE=1 SV=1	RPB9_HUMAN	RPB9_HUMAN	DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens GN=POLR2I PE=1 SV=1	97.000000	0.001320	14504.900000	1.000000	1.000000	1.000000	Spectrum11774 scans:42310,	MEPDGTYEPGFVGIR	NaN	-	F	99.300000	63.400000	44.100000	59.400000	Oxidation (+16), Acetyl (+42)	1724.770000	2.000000	-0.004800	-2.800000	1.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens GN=POLR2I PE=1 SV=1	tr|K7EKS1|K7EKS1_HUMAN	K7EKS1_HUMAN	DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens GN=POLR2I PE=1 SV=1	98.200000	0.002500	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33900.33900.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33900"	MEPDGTYEPGFVGIR	M[+42]EPDGTYEPGFVGIR	-	F	99.500000	51.800000	49.700000	51.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1718.790000	2.000000	0.000240	0.140000	0.000000	0.000000	NaN	NaN	0.232667	0.897700	0.338100	0.391450	NaN	NaN	NaN	NaN	NaN	0.404567	1.044293	0.459094	0.585171	NaN	NaN	NaN	1.044293	0.459094	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ADP-ribosylation factor-binding protein GGA1 OS=Homo sapiens GN=GGA1 PE=2 SV=1	sp|Q9UJY5|GGA1_HUMAN	GGA1_HUMAN	ADP-ribosylation factor-binding protein GGA1 OS=Homo sapiens GN=GGA1 PE=1 SV=1	99.500000	0.001320	70367.900000	1.000000	1.000000	1.000000	Spectrum28448 scans:10708,	MEPETLEAR	NaN	A	I	99.700000	75.400000	43.300000	48.800000	Oxidation (+16), Acetyl (+42)	1132.510000	2.000000	0.000760	0.670000	5.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	SPEE_HUMAN	SPEE_HUMAN	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	100.000000	0.017300	33806.500000	2.000000	5.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.21016.21016.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21016"	MEPGPDGPAASGPAAIR	M[+42]EPGPDGPAASGPAAIR	-	E	99.700000	105.000000	52.100000	96.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1644.790000	2.000000	0.004600	2.800000	1.000000	17.000000	0.543200	0.302167	0.554467	12.836350	77.911400	5.815300	NaN	NaN	NaN	0.682669	0.438389	0.964122	14.932500	105.793197	8.693176	NaN	NaN	NaN	7.807584	53.115793	0.456607	0.472109	1.000000	1.000000	0.206179	0.067780	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	SPEE_HUMAN	SPEE_HUMAN	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	100.000000	0.021200	33806.500000	2.000000	5.000000	9.000000	NSco_TAILS_20150124_Protein_complex_100Kda.41073.41073.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41073"	MEPGPDGPAASGPAAIR	M[+42]EPGPDGPAASGPAAIR	-	E	99.700000	99.800000	51.200000	94.200000	Acetyl (+42)	1634.770000	2.000000	-0.003400	-2.100000	1.000000	17.000000	0.543200	0.302167	0.554467	12.836350	77.911400	5.815300	NaN	NaN	NaN	0.682669	0.438389	0.964122	14.932500	105.793197	8.693176	NaN	NaN	NaN	7.807584	53.115793	0.456607	0.472109	1.000000	1.000000	0.205996	0.067760	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	SPEE_HUMAN	SPEE_HUMAN	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	100.000000	0.021200	33806.500000	2.000000	5.000000	9.000000	NSco_TAILS_20150124_Protein_complex_100Kda.33121.33121.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33121"	MEPGPDGPAASGPAAIR	NaN	-	E	99.700000	123.000000	50.500000	105.000000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1660.770000	2.000000	-0.005700	-3.500000	1.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	SPEE_HUMAN	SPEE_HUMAN	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	100.000000	0.054000	33806.500000	4.000000	9.000000	41.000000	Spectrum51080 scans:22769,	MEPGPDGPAASGPAAIR	M[+42]EPGPDGPAASGPAAIR	-	E	99.700000	82.900000	48.600000	73.500000	Acetyl (+42), Label:13C(6) (+6)	1640.790000	2.000000	-0.002700	-1.600000	1.000000	17.000000	0.543200	0.302167	0.554467	12.836350	77.911400	5.815300	NaN	NaN	NaN	0.682669	0.438389	0.964122	14.932500	105.793197	8.693176	NaN	NaN	NaN	7.807584	53.115793	0.456607	0.472109	1.000000	1.000000	0.205447	0.067721	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	SPEE_HUMAN	SPEE_HUMAN	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	100.000000	0.054000	33806.500000	4.000000	9.000000	41.000000	Spectrum46225 scans:17202,	MEPGPDGPAASGPAAIR	NaN	-	E	99.700000	98.600000	48.100000	90.700000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	1656.790000	2.000000	0.000490	0.290000	1.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	SPEE_HUMAN	SPEE_HUMAN	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	100.000000	0.054000	33806.500000	4.000000	9.000000	41.000000	Spectrum47115 scans:18256,	MEPGPDGPAASGPAAIR	NaN	-	E	99.700000	113.000000	46.400000	96.900000	Oxidation (+16), Acetyl (+42)	1650.760000	2.000000	-0.004500	-2.800000	1.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	SPEE_HUMAN	SPEE_HUMAN	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	100.000000	0.023300	33806.500000	3.000000	7.000000	10.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.39344.39344.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39344"	MEPGPDGPAASGPAAIR	NaN	-	E	99.100000	53.700000	52.200000	51.600000	Oxidation (+16), Dimethyl (+28)	1636.790000	2.000000	-0.002700	-1.700000	1.000000	17.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Protein diaphanous homolog 1 OS=Homo sapiens GN=DIAPH1 PE=4 SV=1	E9PEZ3_HUMAN	E9PEZ3_HUMAN	Protein diaphanous homolog 1 OS=Homo sapiens GN=DIAPH1 PE=4 SV=1	99.000000	0.010000	141048.500000	1.000000	1.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.11614.11614.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11614"	MEPPGGSLGPGR	NaN	-	G	99.700000	70.200000	48.200000	53.100000	Oxidation (+16), Acetyl (+42)	1211.560000	2.000000	-0.000260	-0.220000	1.000000	12.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1	STIP1_HUMAN	STIP1_HUMAN	Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1	100.000000	0.006590	62624.100000	3.000000	5.000000	5.000000	Spectrum22005 scans:8712,	MEQVNELKEKGN	NaN	-	K	99.700000	73.100000	50.200000	62.700000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1547.780000	2.000000	-0.000820	-0.530000	1.000000	12.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction3A (Nsco_Tails_biological_replicate_3_fraction3A_127089)	Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1	STIP1_HUMAN	STIP1_HUMAN	Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1	99.800000	0.159000	62624.100000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction3A.8704.8704.2 File:"Nsco_Tails_biological_replicate_3_fraction3A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8704"	MEQVNELKEKGN	NaN	-	K	99.000000	54.000000	55.100000	49.400000	Oxidation (+16), Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1539.800000	2.000000	-0.001300	-0.870000	1.000000	12.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1	STIP1_HUMAN	STIP1_HUMAN	Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1	99.800000	0.004480	62624.100000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.16953.16953.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16953"	MEQVNELKEKGN	M[+42]EQVNELKEKGN	-	K	99.500000	60.300000	54.500000	56.400000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1531.790000	2.000000	-0.003400	-2.200000	1.000000	12.000000	NaN	NaN	NaN	16.915200	7.233450	0.405100	NaN	NaN	NaN	NaN	NaN	NaN	19.677417	9.822052	0.605576	NaN	NaN	NaN	19.677417	9.822052	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1	STIP1_HUMAN	STIP1_HUMAN	Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1	100.000000	0.006590	62624.100000	3.000000	5.000000	5.000000	Spectrum21901 scans:7694,	MEQVNELKEKGNK	NaN	-	A	99.300000	37.600000	52.400000	22.100000	Oxidation (+16), Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1699.960000	3.000000	-0.000720	-0.430000	1.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1	STIP1_HUMAN	STIP1_HUMAN	Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1	100.000000	0.006590	62624.100000	3.000000	5.000000	5.000000	Spectrum21903 scans:7709,	MEQVNELKEKGNK	NaN	-	A	99.700000	60.100000	52.500000	46.900000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1711.920000	3.000000	0.000720	0.420000	1.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1	STIP1_HUMAN	STIP1_HUMAN	Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1	100.000000	0.006590	62624.100000	3.000000	5.000000	5.000000	Spectrum22190 scans:12270,	MEQVNELKEKGNKAL	NaN	-	S	99.300000	38.500000	53.300000	29.200000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1896.050000	3.000000	0.000290	0.150000	1.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Importin-4 OS=Homo sapiens GN=IPO4	sp|Q8TEX9|IPO4_HUMAN	IPO4_HUMAN	Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2	100.000000	0.007900	118700.700000	1.000000	3.000000	6.000000	Spectrum32061 scans:25100,	MESAGLEQLLR	NaN	-	E	99.700000	90.200000	48.300000	65.700000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1313.650000	2.000000	0.001300	0.980000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Importin-4 OS=Homo sapiens GN=IPO4	sp|Q8TEX9|IPO4_HUMAN	IPO4_HUMAN	Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2	98.900000	0.030100	118700.700000	1.000000	4.000000	12.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40593.40593.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40593"	MESAGLEQLLR	M[+42]ESAGLEQLLR	-	E	99.700000	76.400000	52.500000	64.500000	Acetyl (+42)	1287.650000	2.000000	-0.000170	-0.130000	1.000000	11.000000	0.877100	0.288300	0.328700	0.379100	0.266100	0.708050	NaN	NaN	NaN	1.102300	0.418271	0.571553	0.441006	0.361328	1.058450	NaN	NaN	NaN	0.771653	0.389799	0.257719	0.046417	0.415753	0.098693	0.201686	0.067424	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Isoform 2 of Importin-4 OS=Homo sapiens GN=IPO4	sp|Q8TEX9|IPO4_HUMAN	IPO4_HUMAN	Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2	99.400000	0.032300	118700.700000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction5A.25179.25179.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25179"	MESAGLEQLLR	NaN	-	E	99.700000	88.000000	51.800000	65.500000	Oxidation (+16), Acetyl (+42)	1303.640000	2.000000	-0.000072	-0.055000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Importin-4 OS=Homo sapiens GN=IPO4	sp|Q8TEX9|IPO4_HUMAN	IPO4_HUMAN	Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2	99.200000	0.013400	118700.700000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.34308.34308.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34308"	MESAGLEQLLR	M[+42]ESAGLEQLLR	-	E	99.700000	76.400000	52.600000	44.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1297.660000	2.000000	0.000760	0.590000	1.000000	11.000000	0.877100	0.288300	0.328700	0.379100	0.266100	0.708050	NaN	NaN	NaN	1.102300	0.418271	0.571553	0.441006	0.361328	1.058450	NaN	NaN	NaN	0.771653	0.389799	0.257719	0.046417	0.274742	0.059042	0.201334	0.067366	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 2 of Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2	sp|P78344-2|IF4G2_HUMAN	IF4G2_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2	96.000000	0.002360	98136.900000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.22750.22750.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22750"	MESAIAEGGASR	NaN	-	F	99.400000	55.200000	46.100000	39.700000	Oxidation (+16), Acetyl (+42)	1235.550000	2.000000	0.001300	1.000000	1.000000	12.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2	sp|P78344|IF4G2_HUMAN	IF4G2_HUMAN	Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2 PE=1 SV=1	99.100000	0.007510	102348.800000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.9696.9696.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9696"	MESAIAEGGASR	NaN	-	F	99.700000	68.600000	45.400000	53.000000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1245.550000	2.000000	-0.008100	-6.500000	1.000000	12.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2	sp|P78344|IF4G2_HUMAN	IF4G2_HUMAN	Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2 PE=1 SV=1	99.100000	0.004480	102348.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.16518.16518.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16518"	MESAIAEGGASR	M[+42]ESAIAEGGASR	-	F	99.700000	76.500000	48.000000	66.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1229.570000	2.000000	0.006800	5.600000	1.000000	12.000000	NaN	NaN	0.381767	0.646150	0.128450	0.196900	NaN	NaN	NaN	NaN	NaN	0.663827	0.751665	0.174418	0.294342	NaN	NaN	NaN	0.751665	0.174418	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.054000	37523.700000	7.000000	15.000000	41.000000	Spectrum71742 scans:47563,	MESALDQLKQF	M[+42]ESALDQLKQF	R	T	99.700000	71.100000	49.000000	43.800000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1386.690000	2.000000	-0.001500	-1.100000	11.000000	21.000000	21.066167	5.298467	1.454467	34.286700	17.583000	0.478000	NaN	NaN	NaN	26.475012	7.687107	2.529067	39.885648	23.875348	0.714553	NaN	NaN	NaN	33.180330	15.781228	0.000000	0.082779	0.000000	0.588615	0.199942	0.067287	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.054000	37523.700000	7.000000	15.000000	41.000000	Spectrum63148 scans:37115,	MESALDQLKQF	NaN	R	T	99.700000	79.400000	48.300000	69.000000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1402.690000	2.000000	-0.002800	-2.000000	11.000000	21.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.054000	37523.700000	7.000000	15.000000	41.000000	Spectrum71671 scans:47453,	MESALDQLKQF	M[+42]ESALDQLKQF	R	T	99.700000	84.400000	49.600000	68.300000	Acetyl (+42), Dimethyl:2H(4) (+32)	1382.710000	2.000000	-0.000120	-0.084000	11.000000	21.000000	21.066167	5.298467	1.454467	34.286700	17.583000	0.478000	NaN	NaN	NaN	26.475012	7.687107	2.529067	39.885648	23.875348	0.714553	NaN	NaN	NaN	33.180330	15.781228	0.000000	0.082779	0.000000	0.088220	0.199254	0.067209	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.054000	37523.700000	7.000000	15.000000	41.000000	Spectrum68253 scans:42913,	MESALDQLKQF	NaN	R	T	99.700000	85.900000	49.100000	66.400000	Oxidation (+16), Acetyl (+42), Dimethyl:2H(4) (+32)	1398.700000	2.000000	-0.000052	-0.037000	11.000000	21.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.085600	37523.700000	3.000000	9.000000	37.000000	Nsco_Tails_biological_replicate_3_fraction6A.41010.41010.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41010"	MESALDQLKQF	NaN	R	T	99.700000	79.300000	51.600000	53.700000	Oxidation (+16), Acetyl (+42), Dimethyl (+28)	1394.680000	2.000000	0.001800	1.300000	11.000000	21.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.085600	37523.700000	3.000000	9.000000	37.000000	Nsco_Tails_biological_replicate_3_fraction6A.47531.47531.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47531"	MESALDQLKQF	M[+42]ESALDQLKQF	R	T	99.700000	84.800000	52.100000	55.600000	Acetyl (+42), Dimethyl (+28)	1378.680000	2.000000	-0.001400	-1.000000	11.000000	21.000000	21.066167	5.298467	1.454467	34.286700	17.583000	0.478000	NaN	NaN	NaN	26.475012	7.687107	2.529067	39.885648	23.875348	0.714553	NaN	NaN	NaN	33.180330	15.781228	0.000000	0.082779	0.000000	0.092036	0.198740	0.067092	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.054000	37523.700000	7.000000	15.000000	41.000000	Spectrum71801 scans:47681,	MESALDQLKQFTTVVADTGDFH	NaN	R	A	99.700000	57.100000	52.300000	40.100000	Oxidation (+16), Dimethyl (+28), Dimethyl:2H(4) (+32)	2528.230000	3.000000	-0.009200	-3.600000	11.000000	32.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.054000	37523.700000	7.000000	15.000000	41.000000	Spectrum73378 scans:51187,	MESALDQLKQFTTVVADTGDFH	NaN	R	A	99.700000	98.300000	51.500000	90.400000	Oxidation (+16), Acetyl (+42), Dimethyl:2H(4) (+32)	2542.220000	3.000000	0.000092	0.036000	11.000000	32.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.085600	37523.700000	3.000000	9.000000	37.000000	Nsco_Tails_biological_replicate_3_fraction6A.51190.51190.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=51190"	MESALDQLKQFTTVVADTGDFH	NaN	R	A	99.700000	89.200000	54.600000	85.900000	Oxidation (+16), Acetyl (+42), Dimethyl (+28)	2538.190000	3.000000	-0.000540	-0.210000	11.000000	32.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	RNA-binding protein PNO1 OS=Homo sapiens GN=PNO1 PE=1 SV=1	PNO1_HUMAN	PNO1_HUMAN	RNA-binding protein PNO1 OS=Homo sapiens GN=PNO1 PE=1 SV=1	100.000000	0.003950	27907.300000	2.000000	3.000000	3.000000	Spectrum828 scans:11141,	MESEMETQSAR	NaN	-	A	99.700000	83.800000	33.700000	73.400000	Oxidation (+16), Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10)	1381.530000	2.000000	-0.001800	-1.300000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	KAP0_HUMAN	KAP0_HUMAN	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	99.800000	0.009440	42964.400000	1.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.22683.22683.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22683"	MESGSTAASEEAR	M[+42]ESGSTAASEEAR	-	S	99.700000	108.000000	41.600000	98.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1376.570000	2.000000	-0.009900	-7.200000	1.000000	13.000000	0.519567	0.270333	0.513667	0.735350	0.516500	0.702550	1.021443	4.740714	2.916471	0.652968	0.392204	0.893178	0.855431	0.701337	1.050228	0.683171	2.019025	1.397581	0.730523	1.037522	0.007369	0.173034	0.037275	0.602235	0.013355	0.004565	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	KAP0_HUMAN	KAP0_HUMAN	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	100.000000	0.039500	42964.400000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.4773.4773.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4773"	MESGSTAASEEAR	NaN	-	S	99.700000	111.000000	40.500000	97.600000	Oxidation (+16), Acetyl (+42)	1382.560000	2.000000	-0.001700	-1.200000	1.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	KAP0_HUMAN	KAP0_HUMAN	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	100.000000	0.019800	42964.400000	2.000000	8.000000	15.000000	Spectrum27548 scans:8776,	MESGSTAASEEAR	M[+42]ESGSTAASEEAR	-	S	99.700000	108.000000	40.900000	92.300000	Acetyl (+42), Label:13C(6) (+6)	1372.590000	2.000000	0.000082	0.060000	1.000000	13.000000	0.519567	0.270333	0.513667	0.735350	0.516500	0.702550	1.021443	4.740714	2.916471	0.652968	0.392204	0.893178	0.855431	0.701337	1.050228	0.683171	2.019025	1.397581	0.730523	1.037522	0.007369	0.173034	0.054061	0.601029	0.013266	0.004563	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	KAP0_HUMAN	KAP0_HUMAN	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	100.000000	0.019800	42964.400000	2.000000	8.000000	15.000000	Spectrum25367 scans:4761,	MESGSTAASEEAR	NaN	-	S	99.700000	119.000000	39.700000	109.000000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	1388.580000	2.000000	-0.000570	-0.410000	1.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	KAP0_HUMAN	KAP0_HUMAN	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	99.000000	0.010000	42964.400000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.9935.9935.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9935"	MESGSTAASEEAR	M[+42]ESGSTAASEEAR	-	S	99.700000	108.000000	42.500000	97.200000	Acetyl (+42)	1366.570000	2.000000	0.002100	1.500000	1.000000	13.000000	0.519567	0.270333	0.513667	0.735350	0.516500	0.702550	1.021443	4.740714	2.916471	0.652968	0.392204	0.893178	0.855431	0.701337	1.050228	0.683171	2.019025	1.397581	0.730523	1.037522	0.007369	0.173034	0.008061	0.182890	0.013210	0.004552	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	KAP0_HUMAN	KAP0_HUMAN	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	99.400000	0.013400	42964.400000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.5175.5175.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=5175"	MESGSTAASEEAR	NaN	-	S	99.700000	119.000000	41.200000	111.000000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1392.570000	2.000000	-0.001300	-0.920000	1.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	DTW domain-containing protein 2 OS=Homo sapiens GN=DTWD2 PE=4 SV=1	D6REE2_HUMAN	D6REE2_HUMAN	DTW domain-containing protein 2 OS=Homo sapiens GN=DTWD2 PE=4 SV=1	95.600000	0.004480	15059.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.3869.3869.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3869"	MESQKEAR	M[+42]ESQKEAR	-	T	98.900000	51.800000	50.000000	37.400000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1065.530000	2.000000	0.001000	0.980000	1.000000	8.000000	1.854233	0.682467	0.259467	475.273050	59.590450	0.234650	NaN	NaN	NaN	2.330317	0.990134	0.451168	552.884165	80.915812	0.350774	NaN	NaN	NaN	277.607241	40.952973	0.354249	0.437171	1.000000	0.823552	0.191978	0.066724	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	SF3A3_HUMAN	SF3A3_HUMAN	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	100.000000	0.008640	58833.300000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.29487.29487.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29487"	METILEQQR	NaN	-	R	99.000000	54.700000	51.900000	29.400000	Oxidation (+16), Dimethyl (+28), Label:13C(6)15N(4) (+10)	1200.610000	2.000000	0.000490	0.410000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	SF3A3_HUMAN	SF3A3_HUMAN	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	100.000000	0.018400	58833.300000	3.000000	9.000000	14.000000	Spectrum21084 scans:22022,	METILEQQR	M[+42]ETILEQQR	-	R	99.400000	57.100000	47.400000	24.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1198.590000	2.000000	0.000022	0.018000	1.000000	9.000000	0.677267	0.272000	0.470733	1.051450	0.474750	0.454200	NaN	1.556471	1.169943	0.851158	0.394622	0.818524	1.223150	0.644647	0.678975	NaN	0.662886	0.560640	1.037154	0.567385	0.112966	0.022483	0.501910	0.026911	0.191501	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	SF3A3_HUMAN	SF3A3_HUMAN	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	100.000000	0.018400	58833.300000	3.000000	9.000000	14.000000	Spectrum21086 scans:22026,	METILEQQR	M[+42]ETILEQQR	-	R	99.400000	58.200000	48.100000	26.400000	Acetyl (+42), Label:13C(6) (+6)	1194.600000	2.000000	0.000002	0.001800	1.000000	9.000000	0.677267	0.272000	0.470733	1.051450	0.474750	0.454200	NaN	1.556471	1.169943	0.851158	0.394622	0.818524	1.223150	0.644647	0.678975	NaN	0.662886	0.560640	1.037154	0.567385	0.112966	0.022483	0.215617	0.064316	0.191343	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	SF3A3_HUMAN	SF3A3_HUMAN	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	100.000000	0.018400	58833.300000	3.000000	9.000000	14.000000	Spectrum7857 scans:29781,	METILEQQR	NaN	-	R	99.600000	61.700000	47.500000	24.000000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	1210.600000	2.000000	-0.000770	-0.640000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	SF3A3_HUMAN	SF3A3_HUMAN	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	100.000000	0.018400	58833.300000	3.000000	9.000000	14.000000	Spectrum19872 scans:13949,	METILEQQR	NaN	-	R	99.700000	62.500000	46.700000	29.700000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1214.580000	2.000000	-0.000750	-0.620000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	SF3A3_HUMAN	SF3A3_HUMAN	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	100.000000	0.018400	58833.300000	3.000000	9.000000	14.000000	Spectrum22166 scans:11341,	METILEQQR	NaN	-	R	99.700000	67.700000	46.500000	28.800000	Oxidation (+16), Acetyl (+42)	1204.580000	2.000000	0.000076	0.063000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	SF3A3_HUMAN	SF3A3_HUMAN	Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1	97.500000	0.004670	58833.300000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.54044.54044.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=54044"	METILEQQR	M[+42]ETILEQQR	-	R	99.700000	64.100000	50.800000	25.500000	Acetyl (+42)	1188.580000	2.000000	0.000420	0.350000	1.000000	9.000000	0.677267	0.272000	0.470733	1.051450	0.474750	0.454200	NaN	1.556471	1.169943	0.851158	0.394622	0.818524	1.223150	0.644647	0.678975	NaN	0.662886	0.560640	1.037154	0.567385	0.112966	0.022483	0.113489	0.453581	0.190712	0.657197	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2	sp|Q96RS6|NUDC1_HUMAN	NUDC1_HUMAN	NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2	100.000000	0.005270	66740.000000	3.000000	4.000000	4.000000	Spectrum42806 scans:13267,	MEVAANCSLR	NaN	-	V	98.800000	46.500000	44.200000	21.900000	Oxidation (+16), Acetyl (+42), Carbamidomethyl (+57), Label:13C(6) (+6)	1213.550000	2.000000	-0.000920	-0.760000	1.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2	sp|Q96RS6|NUDC1_HUMAN	NUDC1_HUMAN	NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2	99.200000	0.002500	66740.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.12422.12422.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12422"	MEVAANCSLR	NaN	-	V	99.700000	52.500000	45.800000	33.600000	Oxidation (+16), Acetyl (+42), Carbamidomethyl (+57)	1207.530000	2.000000	-0.000047	-0.039000	1.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2	sp|Q96RS6|NUDC1_HUMAN	NUDC1_HUMAN	NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2	99.800000	0.013400	66740.000000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.18340.18340.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18340"	MEVAANCSLR	M[+42]EVAANC[+57]SLR	-	V	98.600000	47.500000	47.100000	36.000000	Acetyl (+42), Carbamidomethyl (+57)	1191.540000	2.000000	0.000810	0.680000	1.000000	10.000000	0.537000	0.309500	0.581067	0.712600	0.657750	0.924000	NaN	NaN	NaN	0.674877	0.449028	1.010375	0.828966	0.893136	1.381269	NaN	NaN	NaN	0.751922	0.671082	0.065003	0.203432	0.155990	0.879088	0.190241	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2	sp|Q96RS6|NUDC1_HUMAN	NUDC1_HUMAN	NudC domain-containing protein 1 OS=Homo sapiens GN=NUDCD1 PE=1 SV=2	99.800000	0.013400	66740.000000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.18341.18341.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18341"	MEVAANCSLR	M[+42]EVAANC[+57]SLR	-	V	99.700000	61.000000	47.400000	46.700000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1201.550000	2.000000	0.000880	0.740000	1.000000	10.000000	0.537000	0.309500	0.581067	0.712600	0.657750	0.924000	NaN	NaN	NaN	0.674877	0.449028	1.010375	0.828966	0.893136	1.381269	NaN	NaN	NaN	0.751922	0.671082	0.065003	0.203432	0.174583	0.877994	0.190085	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	DNA fragmentation factor subunit alpha OS=Homo sapiens GN=DFFA PE=1 SV=1	sp|O00273|DFFA_HUMAN	DFFA_HUMAN	DNA fragmentation factor subunit alpha OS=Homo sapiens GN=DFFA PE=1 SV=1	100.000000	0.007080	36504.500000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.45831.45831.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=45831"	MEVTGDAGVPESGEIR	M[+42]EVTGDAGVPESGEIR	-	T	99.700000	74.100000	50.400000	66.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1697.790000	2.000000	0.004600	2.700000	1.000000	16.000000	0.519833	2.395067	5.309600	0.636000	0.147900	0.219600	NaN	NaN	NaN	0.653303	3.474804	9.232481	0.739857	0.200828	0.328276	NaN	NaN	NaN	0.696580	1.837816	0.039501	0.463247	0.047577	1.000000	0.189929	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA fragmentation factor subunit alpha OS=Homo sapiens GN=DFFA PE=1 SV=1	sp|O00273|DFFA_HUMAN	DFFA_HUMAN	DNA fragmentation factor subunit alpha OS=Homo sapiens GN=DFFA PE=1 SV=1	100.000000	0.007900	36504.500000	2.000000	4.000000	6.000000	Spectrum29741 scans:14791,	MEVTGDAGVPESGEIR	NaN	-	T	99.700000	70.700000	44.900000	60.300000	Oxidation (+16), Acetyl (+42)	1703.770000	2.000000	-0.000260	-0.150000	1.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA fragmentation factor subunit alpha OS=Homo sapiens GN=DFFA PE=1 SV=1	sp|O00273|DFFA_HUMAN	DFFA_HUMAN	DNA fragmentation factor subunit alpha OS=Homo sapiens GN=DFFA PE=1 SV=1	100.000000	0.007900	36504.500000	2.000000	4.000000	6.000000	Spectrum48432 scans:19755,	MEVTGDAGVPESGEIR	NaN	-	T	99.700000	89.700000	44.900000	82.400000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1713.770000	2.000000	-0.005500	-3.200000	1.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	DNA fragmentation factor subunit alpha OS=Homo sapiens GN=DFFA PE=1 SV=1	sp|O00273|DFFA_HUMAN	DFFA_HUMAN	DNA fragmentation factor subunit alpha OS=Homo sapiens GN=DFFA PE=1 SV=1	100.000000	0.011600	36504.500000	2.000000	4.000000	5.000000	Nsco_Tails_biological_replicate_3_fraction6A.26278.26278.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26278"	MEVTGDAGVPESGEIR	M[+42]EVTGDAGVPESGEIR	-	T	99.600000	63.100000	49.100000	50.700000	Acetyl (+42)	1687.770000	2.000000	-0.007100	-4.200000	1.000000	16.000000	0.519833	2.395067	5.309600	0.636000	0.147900	0.219600	NaN	NaN	NaN	0.653303	3.474804	9.232481	0.739857	0.200828	0.328276	NaN	NaN	NaN	0.696580	1.837816	0.039501	0.463247	0.132051	0.489187	0.189462	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Proteasome subunit beta type-2 OS=Homo sapiens GN=PSMB2 PE=1 SV=1	PSB2_HUMAN	PSB2_HUMAN	Proteasome subunit beta type-2 OS=Homo sapiens GN=PSMB2 PE=1 SV=1	99.800000	0.005760	22819.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.43060.43060.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43060"	MEYLIGIQGPDYVLVASDR	NaN	-	V	99.700000	84.500000	56.100000	83.600000	Oxidation (+16), Acetyl (+42)	2196.080000	2.000000	0.002200	1.000000	1.000000	19.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit beta type-2 OS=Homo sapiens GN=PSMB2 PE=1 SV=1	PSB2_HUMAN	PSB2_HUMAN	Proteasome subunit beta type-2 OS=Homo sapiens GN=PSMB2 PE=1 SV=1	99.800000	0.010000	22819.500000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.43870.43870.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43870"	MEYLIGIQGPDYVLVASDR	NaN	-	V	99.400000	77.200000	56.300000	75.700000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	2206.090000	3.000000	0.002400	1.100000	1.000000	19.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit beta type-2 OS=Homo sapiens GN=PSMB2 PE=1 SV=1	PSB2_HUMAN	PSB2_HUMAN	Proteasome subunit beta type-2 OS=Homo sapiens GN=PSMB2 PE=1 SV=1	99.800000	0.010000	22819.500000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.44019.44019.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44019"	MEYLIGIQGPDYVLVASDR	NaN	-	V	99.700000	83.100000	56.800000	81.600000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	2202.100000	3.000000	0.000490	0.220000	1.000000	19.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	DNA replication complex GINS protein PSF1 OS=Homo sapiens GN=GINS1 PE=1 SV=1	PSF1_HUMAN	PSF1_HUMAN	DNA replication complex GINS protein PSF1 OS=Homo sapiens GN=GINS1 PE=1 SV=1	99.700000	0.002310	22971.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.40711.40711.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40711"	MFCEKAMELIR	M[+42]FC[+57]EKAMELIR	-	E	99.400000	59.500000	53.900000	53.600000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1506.760000	2.000000	-0.002500	-1.600000	1.000000	11.000000	5.222500	1.375900	0.263500	6.973150	4.691450	0.876550	NaN	NaN	NaN	6.563403	1.996180	0.458181	8.111851	6.370358	1.310337	NaN	NaN	NaN	7.337627	4.183269	0.066925	0.306682	1.000000	0.323461	0.187618	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein Hikeshi OS=Homo sapiens GN=C11orf73 PE=4 SV=1	E9PPG8_HUMAN	E9PPG8_HUMAN	Protein Hikeshi OS=Homo sapiens GN=C11orf73 PE=4 SV=1	95.600000	0.001320	21050.800000	1.000000	1.000000	1.000000	Spectrum49118 scans:20551,	MFGCLVAGR	NaN	-	L	99.000000	49.100000	45.700000	31.900000	Oxidation (+16), Dimethyl (+28), Carbamidomethyl (+57)	1053.510000	2.000000	-0.000800	-0.760000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.054000	37523.700000	7.000000	15.000000	41.000000	Spectrum36864 scans:6381,	MFNAENGK	M[+28]FNAENGK	R	-	99.000000	54.400000	46.200000	47.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	973.480000	2.000000	-0.000079	-0.082000	330.000000	337.000000	16.328800	NaN	1.061267	45.233150	51.046950	2.790800	NaN	NaN	NaN	20.521302	NaN	1.845360	52.619631	69.314889	4.171911	NaN	NaN	NaN	36.570466	69.314889	0.000000	NaN	0.000000	NaN	0.185512	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	DNA polymerase delta subunit 2 (Fragment) OS=Homo sapiens GN=POLD2 PE=4 SV=1	C9J8Z7_HUMAN	C9J8Z7_HUMAN	DNA polymerase delta subunit 2 (Fragment) OS=Homo sapiens GN=POLD2 PE=4 SV=1	94.400000	0.002500	17581.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.10852.10852.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10852"	MFSEQAAQR	NaN	-	A	98.500000	41.500000	44.900000	11.600000	Oxidation (+16), Acetyl (+42)	1124.490000	2.000000	0.000450	0.400000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	DNA polymerase delta subunit 2 (Fragment) OS=Homo sapiens GN=POLD2 PE=4 SV=1	C9IZD2_HUMAN	C9IZD2_HUMAN	DNA polymerase delta subunit 2 (Fragment) OS=Homo sapiens GN=POLD2 PE=4 SV=1	98.900000	0.004480	16838.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.16768.16768.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16768"	MFSEQAAQR	M[+42]FSEQAAQR	-	A	99.700000	61.000000	46.200000	31.800000	Acetyl (+42)	1108.500000	2.000000	-0.000270	-0.250000	1.000000	9.000000	1.776267	2.115733	1.247333	0.405050	0.121400	0.374000	NaN	NaN	NaN	2.232332	3.069543	2.168898	0.471194	0.164845	0.559085	NaN	NaN	NaN	1.351763	1.617194	0.367568	0.465844	1.000000	1.000000	0.185215	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3	sp|P52272|HNRPM_HUMAN	HNRPM_HUMAN	Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3	98.000000	0.004480	77499.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.6079.6079.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6079"	MGANSLER	MGANSLER	R	M	99.000000	60.000000	47.500000	34.400000		876.410000	2.000000	0.002500	2.800000	571.000000	578.000000	3.490167	3.939733	2.921900	0.919400	1.343250	1.340100	NaN	NaN	NaN	4.386285	5.715833	5.080682	1.069536	1.823953	2.003289	NaN	NaN	NaN	2.727910	3.769893	0.347740	0.303354	1.000000	1.000000	0.185067	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.175000	9093.600000	3.000000	19.000000	133.000000	Spectrum44540 scans:15294,	MGESDDSILR	M[+28]GESDDSILR	R	L	98.700000	47.100000	46.100000	37.900000	Dimethyl (+28), Label:13C(6) (+6)	1155.550000	2.000000	-0.000710	-0.610000	62.000000	71.000000	83.891800	1.340667	0.224700	0.381700	0.908300	8.672600	NaN	NaN	NaN	105.431444	1.945062	0.390715	0.444031	1.233349	12.964497	NaN	NaN	NaN	52.937737	1.589206	0.471751	0.140239	1.000000	0.165859	0.183744	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.175000	9093.600000	3.000000	19.000000	133.000000	Spectrum19255 scans:12182,	MGESDDSILR	M[+28]GESDDSILR	R	L	99.600000	56.500000	44.700000	45.800000	Dimethyl (+28)	1149.530000	2.000000	-0.000720	-0.630000	62.000000	71.000000	83.891800	1.340667	0.224700	0.381700	0.908300	8.672600	NaN	NaN	NaN	105.431444	1.945062	0.390715	0.444031	1.233349	12.964497	NaN	NaN	NaN	52.937737	1.589206	0.471751	0.140239	1.000000	0.165802	0.183162	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.175000	9093.600000	3.000000	19.000000	133.000000	Spectrum40916 scans:11118,	MGESDDSILR	NaN	R	L	99.700000	67.900000	43.900000	47.900000	Oxidation (+16), Dimethyl (+28), Label:13C(6)15N(4) (+10)	1175.540000	2.000000	-0.000370	-0.310000	62.000000	71.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.175000	9093.600000	3.000000	19.000000	133.000000	Spectrum40794 scans:10978,	MGESDDSILR	NaN	R	L	99.700000	74.200000	45.100000	53.900000	Oxidation (+16), Dimethyl (+28), Label:13C(6) (+6)	1171.550000	2.000000	-0.001100	-0.940000	62.000000	71.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.175000	9093.600000	3.000000	19.000000	133.000000	Spectrum44468 scans:15210,	MGESDDSILR	NaN	R	L	99.700000	76.200000	43.400000	57.000000	Oxidation (+16), Dimethyl (+28)	1165.530000	2.000000	-0.001200	-1.100000	62.000000	71.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.105000	140943.500000	4.000000	8.000000	8.000000	Nsco_Tails_biological_replicate_3_fraction2A.6904.6904.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6904"	MGGEEAEIR	M[+28]GGEEAEIR	R	F	99.200000	57.800000	48.200000	43.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1028.480000	2.000000	0.000500	0.480000	930.000000	938.000000	0.565333	0.384733	1.217733	2.141150	2.854900	2.181850	NaN	NaN	NaN	0.710486	0.558178	2.117429	2.490795	3.876570	3.261604	NaN	NaN	NaN	1.600640	2.217374	0.323106	0.408960	1.000000	1.000000	0.182440	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	sp|Q08211|DHX9_HUMAN	DHX9_HUMAN	ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4	100.000000	0.032900	140943.500000	9.000000	17.000000	25.000000	Spectrum15276 scans:4377,	MGGEEAEIR	NaN	R	F	99.300000	50.300000	43.800000	35.300000	Oxidation (+16), Dimethyl (+28), Label:13C(6)15N(4) (+10)	1044.480000	2.000000	-0.000530	-0.500000	930.000000	938.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	NUDC_HUMAN	NUDC_HUMAN	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	100.000000	0.021100	38225.700000	2.000000	8.000000	16.000000	Spectrum23645 scans:1943,	MGGEQEEER	NaN	-	F	99.100000	49.300000	39.900000	25.500000	Oxidation (+16), Dimethyl (+28), Label:13C(6) (+6)	1113.470000	2.000000	0.000770	0.690000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	NUDC_HUMAN	NUDC_HUMAN	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	100.000000	0.021100	38225.700000	2.000000	8.000000	16.000000	Spectrum26394 scans:6548,	MGGEQEEER	M[+42]GGEQEEER	-	F	99.300000	44.700000	35.700000	33.500000	Acetyl (+42)	1105.430000	2.000000	0.000170	0.150000	1.000000	9.000000	0.818367	1.667067	1.469333	NaN	5.959500	NaN	NaN	NaN	24.182000	1.028486	2.418609	2.554918	NaN	8.092199	NaN	NaN	NaN	11.588077	1.028486	5.255404	NaN	0.315106	NaN	0.839799	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	NUDC_HUMAN	NUDC_HUMAN	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	100.000000	0.021100	38225.700000	2.000000	8.000000	16.000000	Spectrum22508 scans:1872,	MGGEQEEER	NaN	-	F	99.700000	57.300000	37.700000	44.300000	Oxidation (+16), Dimethyl (+28), Label:13C(6)15N(4) (+10)	1117.460000	2.000000	-0.000790	-0.700000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	NUDC_HUMAN	NUDC_HUMAN	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	100.000000	0.007510	38225.700000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.2759.2759.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2759"	MGGEQEEER	M[+42]GGEQEEER	-	F	99.300000	45.400000	43.000000	22.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1101.470000	2.000000	0.001700	1.600000	1.000000	9.000000	0.818367	1.667067	1.469333	NaN	5.959500	NaN	NaN	NaN	24.182000	1.028486	2.418609	2.554918	NaN	8.092199	NaN	NaN	NaN	11.588077	1.028486	5.255404	NaN	0.315106	NaN	0.379923	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	NUDC_HUMAN	NUDC_HUMAN	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	100.000000	0.007510	38225.700000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.2756.2756.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2756"	MGGEQEEER	NaN	-	F	99.700000	65.800000	41.100000	32.900000	Oxidation (+16), Dimethyl (+28)	1107.450000	2.000000	-0.000390	-0.360000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction4A (Nsco_Tails_biological_replicate_3_fraction4A_127088)	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	NUDC_HUMAN	NUDC_HUMAN	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	99.600000	0.401000	38225.700000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction4A.2702.2702.2 File:"Nsco_Tails_biological_replicate_3_fraction4A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2702"	MGGEQEEER	NaN	-	F	99.700000	73.800000	38.500000	52.000000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1131.450000	2.000000	0.007500	6.600000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	NUDC_HUMAN	NUDC_HUMAN	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	100.000000	0.086200	38225.700000	1.000000	6.000000	8.000000	Nsco_Tails_biological_replicate_3_fraction5A.6546.6546.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6546"	MGGEQEEER	NaN	-	F	99.700000	57.900000	38.800000	34.500000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	1127.450000	2.000000	-0.000730	-0.650000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	NUDC_HUMAN	NUDC_HUMAN	Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1	100.000000	0.086200	38225.700000	1.000000	6.000000	8.000000	Nsco_Tails_biological_replicate_3_fraction5A.6547.6547.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6547"	MGGEQEEER	NaN	-	F	99.700000	62.300000	36.300000	40.200000	Oxidation (+16), Acetyl (+42)	1121.430000	2.000000	-0.004200	-3.700000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	MARE1_HUMAN	MARE1_HUMAN	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	100.000000	0.030300	29981.500000	5.000000	15.000000	23.000000	Spectrum53930 scans:26025,	MGVDKIIPVDKLVK	NaN	R	G	98.800000	23.600000	47.200000	11.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1690.090000	4.000000	-0.001200	-0.710000	85.000000	98.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	ARPC2_HUMAN	ARPC2_HUMAN	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	100.000000	0.025000	34315.700000	3.000000	7.000000	19.000000	Spectrum30768 scans:18094,	MILLEVNNR	M[+28]ILLEVNNR	-	I	98.700000	54.800000	49.500000	37.700000	Dimethyl (+28), Label:13C(6) (+6)	1134.650000	2.000000	0.000710	0.620000	1.000000	9.000000	0.485467	0.223233	0.461533	0.835250	0.490200	0.586900	NaN	NaN	NaN	0.610113	0.323871	0.802527	0.971645	0.665626	0.877345	NaN	NaN	NaN	0.790879	0.494748	0.143051	0.211711	1.000000	0.247020	0.179328	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	ARPC2_HUMAN	ARPC2_HUMAN	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	100.000000	0.025000	34315.700000	3.000000	7.000000	19.000000	Spectrum29874 scans:15031,	MILLEVNNR	NaN	-	I	98.800000	51.300000	49.600000	31.200000	Oxidation (+16), Dimethyl (+28), Label:13C(6) (+6)	1150.650000	2.000000	-0.000310	-0.270000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	ARPC2_HUMAN	ARPC2_HUMAN	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	100.000000	0.025000	34315.700000	3.000000	7.000000	19.000000	Spectrum30766 scans:18090,	MILLEVNNR	M[+28]ILLEVNNR	-	I	99.300000	56.600000	49.600000	30.600000	Dimethyl (+28)	1128.630000	2.000000	-0.000022	-0.019000	1.000000	9.000000	0.485467	0.223233	0.461533	0.835250	0.490200	0.586900	NaN	NaN	NaN	0.610113	0.323871	0.802527	0.971645	0.665626	0.877345	NaN	NaN	NaN	0.790879	0.494748	0.143051	0.211711	0.160799	0.245043	0.178912	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	ARPC2_HUMAN	ARPC2_HUMAN	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	100.000000	0.025000	34315.700000	3.000000	7.000000	19.000000	Spectrum30782 scans:18126,	MILLEVNNR	NaN	-	I	99.700000	70.200000	49.400000	44.900000	Oxidation (+16), Dimethyl (+28)	1144.630000	2.000000	-0.000440	-0.380000	1.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	ARPC2_HUMAN	ARPC2_HUMAN	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	100.000000	0.053900	34315.700000	2.000000	4.000000	5.000000	Nsco_Tails_biological_replicate_3_fraction5A.18000.18000.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18000"	MILLEVNNR	M[+28]ILLEVNNR	-	I	98.600000	56.400000	53.400000	33.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1138.650000	2.000000	0.004600	4.000000	1.000000	9.000000	0.485467	0.223233	0.461533	0.835250	0.490200	0.586900	NaN	NaN	NaN	0.610113	0.323871	0.802527	0.971645	0.665626	0.877345	NaN	NaN	NaN	0.790879	0.494748	0.143051	0.211711	0.179980	0.246771	0.178636	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5	RL4_HUMAN	RL4_HUMAN	60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5	100.000000	0.009220	47681.100000	6.000000	7.000000	7.000000	Spectrum3671 scans:19101,	MINTDLSR	NaN	K	I	99.000000	52.800000	46.700000	28.100000	Oxidation (+16), Dimethyl (+28)	992.500000	2.000000	-0.000480	-0.480000	284.000000	291.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2	sp|O95232|LC7L3_HUMAN	LC7L3_HUMAN	Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2	97.400000	0.008640	51449.100000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.51435.51435.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=51435"	MISAAQLLDELMGR	NaN	-	D	99.700000	105.000000	53.300000	79.500000	Oxidation (+16), Acetyl (+42)	1604.790000	2.000000	-0.000770	-0.480000	1.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2	sp|O95232|LC7L3_HUMAN	LC7L3_HUMAN	Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2	98.900000	0.012500	51449.100000	1.000000	3.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46589.46589.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46589"	MISAAQLLDELMGR	NaN	-	D	99.300000	52.300000	52.600000	51.400000	Oxidation (+16), Acetyl (+42), Oxidation (+16)	1620.780000	2.000000	-0.001100	-0.660000	1.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2	sp|O95232|LC7L3_HUMAN	LC7L3_HUMAN	Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2	98.900000	0.012500	51449.100000	1.000000	3.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46478.46478.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46478"	MISAAQLLDELMGR	NaN	-	D	99.600000	57.300000	53.700000	51.900000	Oxidation (+16), Acetyl (+42), Oxidation (+16), Label:13C(6) (+6)	1626.810000	2.000000	-0.000048	-0.029000	1.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2	sp|O95232|LC7L3_HUMAN	LC7L3_HUMAN	Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2	98.900000	0.012500	51449.100000	1.000000	3.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46457.46457.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46457"	MISAAQLLDELMGR	NaN	-	D	99.700000	81.600000	52.400000	75.300000	Oxidation (+16), Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10)	1630.790000	2.000000	-0.008200	-5.000000	1.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2	RL18A_HUMAN	RL18A_HUMAN	60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2	100.000000	0.009220	20744.600000	2.000000	5.000000	7.000000	Spectrum188 scans:8424,	MKASGTLR	M[+28]KASGTLR	-	E	99.000000	36.300000	48.400000	18.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	936.550000	3.000000	-0.000490	-0.530000	1.000000	8.000000	NaN	NaN	0.330167	NaN	NaN	0.413250	NaN	NaN	NaN	NaN	NaN	0.574103	NaN	NaN	0.617759	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	RS6_HUMAN	RS6_HUMAN	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	100.000000	0.002500	28663.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.29725.29725.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29725"	MKLNISFPATGC	M[+28]KLNISFPATGC[+57]	-	Q	99.000000	51.100000	53.900000	42.400000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57)	1401.720000	2.000000	-0.000240	-0.170000	1.000000	12.000000	47.509800	18.308700	0.340933	43.355900	16.965250	0.390100	NaN	NaN	NaN	59.708181	26.562579	0.592824	50.435830	23.036527	0.583153	NaN	NaN	NaN	55.072006	24.799553	0.000000	0.000000	0.000000	0.000000	0.177267	0.869674	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	RS6_HUMAN	RS6_HUMAN	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	100.000000	0.008960	28663.700000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.26190.26190.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26190"	MKLNISFPATGCQKLIEVDDER	M[+28]KLNISFPATGC[+57]QKLIEVDDER	-	K	99.100000	60.200000	60.200000	51.900000	Dimethyl (+28), Dimethyl (+28), Carbamidomethyl (+57), Dimethyl (+28)	2647.370000	2.000000	-0.001900	-0.730000	1.000000	22.000000	9.727933	7.013733	0.922967	119.425500	55.349800	0.417900	NaN	NaN	NaN	12.225629	10.175646	1.604880	138.927439	75.157580	0.624710	NaN	NaN	NaN	75.576534	42.666613	0.000000	0.000000	0.000000	0.000000	0.177131	0.866417	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2	F5H423_HUMAN	F5H423_HUMAN	ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=3 SV=1	94.600000	0.002330	23328.500000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.22717.22717.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22717"	MLAEDELR	NaN	R	D	99.000000	64.700000	49.700000	43.100000	Oxidation (+16), Dimethyl (+28), Label:13C(6)15N(4) (+10)	1029.510000	2.000000	0.000850	0.820000	110.000000	117.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	UPF0183 protein C16orf70 (Fragment) OS=Homo sapiens GN=C16orf70 PE=4 SV=1	H3BRA5_HUMAN	H3BRA5_HUMAN	UPF0183 protein C16orf70 (Fragment) OS=Homo sapiens GN=C16orf70 PE=4 SV=1	98.300000	0.004480	18559.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.23041.23041.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23041"	MLDLEVVPER	M[+28]LDLEVVPER	-	S	99.600000	58.400000	53.500000	45.200000	Dimethyl (+28)	1227.650000	2.000000	-0.001300	-1.000000	1.000000	10.000000	1.344900	0.662667	0.749600	0.525300	0.879500	1.635400	NaN	NaN	NaN	1.690210	0.961408	1.303425	0.611080	1.194243	2.444727	NaN	NaN	NaN	1.150645	1.077825	0.279144	0.068497	0.310658	0.100927	0.175785	0.820331	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	HNRPF_HUMAN	HNRPF_HUMAN	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	100.000000	0.025000	45653.800000	3.000000	8.000000	19.000000	Spectrum11378 scans:40469,	MLGPEGGEGFVVK	NaN	M	L	99.700000	77.900000	49.300000	40.900000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1412.710000	2.000000	-0.001000	-0.720000	2.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	HNRPF_HUMAN	HNRPF_HUMAN	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	100.000000	0.025000	45653.800000	3.000000	8.000000	19.000000	Spectrum11389 scans:40518,	MLGPEGGEGFVVK	NaN	M	L	99.700000	91.400000	49.800000	68.600000	Oxidation (+16), Acetyl (+42), Dimethyl:2H(4) (+32)	1408.720000	2.000000	0.000150	0.110000	2.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	HNRPF_HUMAN	HNRPF_HUMAN	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	100.000000	0.025000	45653.800000	3.000000	8.000000	19.000000	Spectrum59478 scans:32615,	MLGPEGGEGFVVKLR	NaN	M	G	99.700000	92.500000	52.100000	80.800000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1691.900000	2.000000	-0.005100	-3.000000	2.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	HNRPF_HUMAN	HNRPF_HUMAN	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	100.000000	0.025000	45653.800000	3.000000	8.000000	19.000000	Spectrum12051 scans:43384,	MLGPEGGEGFVVKLR	NaN	M	G	99.700000	88.900000	52.400000	74.300000	Oxidation (+16), Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1683.920000	2.000000	-0.003800	-2.200000	2.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	HNRPF_HUMAN	HNRPF_HUMAN	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	100.000000	0.067600	45653.800000	2.000000	7.000000	27.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.35459.35459.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35459"	MLGPEGGEGFVVKLR	M[+42]LGPEGGEGFVVKLR	M	G	99.700000	94.200000	56.300000	85.900000	Acetyl (+42), Dimethyl (+28)	1657.880000	2.000000	-0.001500	-0.870000	2.000000	16.000000	18.829933	9.424533	0.496700	51.955550	22.868050	0.448200	NaN	NaN	NaN	23.664614	13.673276	0.863676	60.439785	31.051735	0.670005	NaN	NaN	NaN	42.052199	22.362505	0.000000	0.000000	0.000000	0.000000	0.174066	0.784181	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	HNRPF_HUMAN	HNRPF_HUMAN	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	100.000000	0.004670	45653.800000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.62025.62025.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=62025"	MLGPEGGEGFVVKLR	M[+42]LGPEGGEGFVVKLR	M	G	99.700000	87.100000	56.600000	80.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1675.910000	2.000000	-0.003500	-2.100000	2.000000	16.000000	18.829933	9.424533	0.496700	51.955550	22.868050	0.448200	NaN	NaN	NaN	23.664614	13.673276	0.863676	60.439785	31.051735	0.670005	NaN	NaN	NaN	42.052199	22.362505	0.000000	0.000000	0.000000	0.000000	0.173674	0.755991	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	HNRPF_HUMAN	HNRPF_HUMAN	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	100.000000	0.094000	45653.800000	2.000000	7.000000	21.000000	Nsco_Tails_biological_replicate2_apoptosis.30239.30239.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30239"	MLGPEGGEGFVVKLR	M[+42]LGPEGGEGFVVKLR	M	G	99.700000	74.800000	56.900000	60.900000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1667.930000	2.000000	0.000770	0.460000	2.000000	16.000000	18.829933	9.424533	0.496700	51.955550	22.868050	0.448200	NaN	NaN	NaN	23.664614	13.673276	0.863676	60.439785	31.051735	0.670005	NaN	NaN	NaN	42.052199	22.362505	0.000000	0.000000	0.000000	0.000000	0.173543	0.753529	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	HNRPF_HUMAN	HNRPF_HUMAN	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	100.000000	0.020800	45653.800000	2.000000	5.000000	9.000000	Nsco_Tails_biological_replicate_3_fraction6A.31710.31710.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31710"	MLGPEGGEGFVVKLR	NaN	M	G	99.700000	92.900000	56.200000	82.300000	Oxidation (+16), Acetyl (+42), Dimethyl (+28)	1673.890000	2.000000	0.004100	2.400000	2.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Zinc finger protein 143 (Fragment) OS=Homo sapiens GN=ZNF143 PE=4 SV=1	C9JCG1_HUMAN	C9JCG1_HUMAN	Zinc finger protein 143 (Fragment) OS=Homo sapiens GN=ZNF143 PE=4 SV=1	95.300000	0.002500	8845.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.35248.35248.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35248"	MLLAQINR	M[+42]LLAQINR	-	D	98.800000	60.600000	52.100000	30.400000	Acetyl (+42)	999.550000	2.000000	-0.008200	-8.200000	1.000000	8.000000	0.195133	0.212433	1.480500	0.481900	0.120800	0.198550	NaN	NaN	NaN	0.245235	0.308202	2.574335	0.560593	0.164030	0.296808	NaN	NaN	NaN	0.402914	0.236116	0.237475	0.188637	1.000000	0.228551	0.172637	0.748652	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	PPCE_HUMAN	PPCE_HUMAN	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	100.000000	0.021100	80683.500000	3.000000	10.000000	16.000000	Spectrum61640 scans:35336,	MLSLQYPDVYR	NaN	-	D	99.700000	64.700000	47.700000	43.300000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1451.700000	2.000000	-0.001900	-1.300000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	PPCE_HUMAN	PPCE_HUMAN	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	100.000000	0.021100	80683.500000	3.000000	10.000000	16.000000	Spectrum60687 scans:34103,	MLSLQYPDVYR	NaN	-	D	99.700000	71.300000	48.600000	53.300000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	1447.710000	2.000000	-0.000950	-0.660000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	PPCE_HUMAN	PPCE_HUMAN	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	100.000000	0.021100	80683.500000	3.000000	10.000000	16.000000	Spectrum67037 scans:41480,	MLSLQYPDVYR	M[+42]LSLQYPDVYR	-	D	99.700000	77.900000	48.500000	60.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1435.700000	2.000000	-0.001100	-0.790000	1.000000	11.000000	0.130300	0.163800	1.257300	0.461300	0.628400	1.304800	NaN	NaN	NaN	0.163755	0.237644	2.186228	0.536629	0.853283	1.950519	NaN	NaN	NaN	0.350192	0.545463	0.311446	0.327080	0.876495	1.000000	0.172251	0.657197	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	PPCE_HUMAN	PPCE_HUMAN	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	100.000000	0.002330	80683.500000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.57022.57022.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=57022"	MLSLQYPDVYR	NaN	-	D	99.700000	71.600000	51.000000	57.900000	Oxidation (+16), Acetyl (+42)	1441.690000	2.000000	-0.003000	-2.100000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Cystatin-B OS=Homo sapiens GN=CSTB PE=1 SV=2	CYTB_HUMAN	CYTB_HUMAN	Cystatin-B OS=Homo sapiens GN=CSTB PE=1 SV=2	97.700000	0.007000	11121.300000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.46320.46320.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46320"	MMCGAPSATQPATAETQHIADQVR	NaN	-	S	99.600000	66.500000	51.400000	0.000000	Dimethyl (+28), Oxidation (+16), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2624.190000	2.000000	-0.017000	-6.400000	1.000000	24.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Cystatin-B OS=Homo sapiens GN=CSTB PE=1 SV=2	CYTB_HUMAN	CYTB_HUMAN	Cystatin-B OS=Homo sapiens GN=CSTB PE=1 SV=2	97.700000	0.007000	11121.300000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.40937.40937.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40937"	MMCGAPSATQPATAETQHIADQVR	M[+42]MC[+57]GAPSATQPATAETQHIADQVR	-	S	99.700000	66.800000	50.400000	2.970000	Oxidation (+16), Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2638.180000	3.000000	-0.003700	-1.400000	1.000000	24.000000	0.510900	0.219700	0.399567	NaN	8.753050	NaN	NaN	NaN	NaN	0.642076	0.318745	0.694778	NaN	11.885464	NaN	NaN	NaN	NaN	0.642076	6.102104	NaN	0.479715	NaN	1.000000	1.000000	0.649813	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Cystatin-B OS=Homo sapiens GN=CSTB PE=1 SV=2	CYTB_HUMAN	CYTB_HUMAN	Cystatin-B OS=Homo sapiens GN=CSTB PE=1 SV=2	97.700000	0.007000	11121.300000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.40963.40963.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40963"	MMCGAPSATQPATAETQHIADQVR	M[+42]MC[+57]GAPSATQPATAETQHIADQVR	-	S	99.700000	71.500000	49.800000	2.200000	Oxidation (+16), Acetyl (+42), Carbamidomethyl (+57)	2628.170000	2.000000	-0.007900	-3.000000	1.000000	24.000000	0.510900	0.219700	0.399567	NaN	8.753050	NaN	NaN	NaN	NaN	0.642076	0.318745	0.694778	NaN	11.885464	NaN	NaN	NaN	NaN	0.642076	6.102104	NaN	0.479715	NaN	1.000000	1.000000	0.647993	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	THIC_HUMAN	THIC_HUMAN	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	100.000000	0.027700	41332.400000	4.000000	8.000000	21.000000	Spectrum31605 scans:21924,	MNAGSDPVVIVSAAR	M[+42]NAGSDPVVIVSAAR	-	T	99.700000	96.600000	50.700000	82.400000	Acetyl (+42), Label:13C(6) (+6)	1533.790000	2.000000	-0.000560	-0.360000	1.000000	15.000000	0.564333	0.451067	0.792600	0.649150	0.426900	0.655550	NaN	NaN	NaN	0.709229	0.654415	1.378195	0.755155	0.579673	0.979969	NaN	NaN	NaN	0.732192	0.617044	0.019959	0.038510	0.020412	0.046191	0.171105	0.637282	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	THIC_HUMAN	THIC_HUMAN	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	100.000000	0.027700	41332.400000	4.000000	8.000000	21.000000	Spectrum30765 scans:18088,	MNAGSDPVVIVSAAR	NaN	-	T	99.700000	111.000000	49.500000	99.500000	Oxidation (+16), Acetyl (+42)	1543.770000	2.000000	-0.000480	-0.310000	1.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	THIC_HUMAN	THIC_HUMAN	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	100.000000	0.027700	41332.400000	4.000000	8.000000	21.000000	Spectrum58134 scans:30986,	MNAGSDPVVIVSAAR	NaN	-	T	99.700000	125.000000	50.300000	111.000000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	1549.790000	2.000000	0.001200	0.790000	1.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	THIC_HUMAN	THIC_HUMAN	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	100.000000	0.030100	41332.400000	1.000000	5.000000	12.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.29186.29186.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29186"	MNAGSDPVVIVSAAR	M[+42]NAGSDPVVIVSAAR	-	T	99.700000	67.100000	54.000000	65.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1537.780000	2.000000	-0.003200	-2.100000	1.000000	15.000000	0.564333	0.451067	0.792600	0.649150	0.426900	0.655550	NaN	NaN	NaN	0.709229	0.654415	1.378195	0.755155	0.579673	0.979969	NaN	NaN	NaN	0.732192	0.617044	0.019959	0.038510	0.076868	0.070591	0.170726	0.632058	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	THIC_HUMAN	THIC_HUMAN	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	100.000000	0.030100	41332.400000	1.000000	5.000000	12.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.29279.29279.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29279"	MNAGSDPVVIVSAAR	M[+42]NAGSDPVVIVSAAR	-	T	99.700000	95.600000	54.000000	88.700000	Acetyl (+42)	1527.770000	2.000000	0.000310	0.200000	1.000000	15.000000	0.564333	0.451067	0.792600	0.649150	0.426900	0.655550	NaN	NaN	NaN	0.709229	0.654415	1.378195	0.755155	0.579673	0.979969	NaN	NaN	NaN	0.732192	0.617044	0.019959	0.038510	0.076783	0.070554	0.170600	0.630336	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	THIC_HUMAN	THIC_HUMAN	Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2	100.000000	0.030100	41332.400000	1.000000	5.000000	12.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.23313.23313.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23313"	MNAGSDPVVIVSAAR	NaN	-	T	99.700000	125.000000	53.100000	117.000000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1553.770000	2.000000	-0.009300	-6.000000	1.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1	sp|P62847|RS24_HUMAN	RS24_HUMAN	40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1	100.000000	0.021100	15405.800000	1.000000	5.000000	16.000000	Spectrum4976 scans:22460,	MNDTVTIR	NaN	-	T	99.000000	53.000000	46.100000	29.300000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	1012.500000	2.000000	0.000007	0.007000	1.000000	8.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1	sp|P62847|RS24_HUMAN	RS24_HUMAN	40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1	100.000000	0.021100	15405.800000	1.000000	5.000000	16.000000	Spectrum18156 scans:9899,	MNDTVTIR	NaN	-	T	99.000000	55.700000	44.600000	27.100000	Oxidation (+16), Acetyl (+42)	1006.480000	2.000000	0.000420	0.410000	1.000000	8.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1	sp|P62847|RS24_HUMAN	RS24_HUMAN	40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1	99.900000	0.045100	15405.800000	1.000000	4.000000	18.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.18545.18545.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18545"	MNDTVTIR	M[+42]NDTVTIR	-	T	99.000000	70.400000	49.500000	35.700000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1000.490000	2.000000	0.000170	0.170000	1.000000	8.000000	0.446333	0.203267	0.456300	0.859450	0.378650	0.441300	NaN	NaN	3.655571	0.560932	0.294903	0.793427	0.999796	0.514156	0.659691	NaN	NaN	1.751759	0.780364	0.404529	0.174506	0.168476	1.000000	0.176194	0.169848	0.593162	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1	sp|P62847|RS24_HUMAN	RS24_HUMAN	40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1	99.900000	0.045100	15405.800000	1.000000	4.000000	18.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.18604.18604.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18604"	MNDTVTIR	M[+42]NDTVTIR	-	T	99.000000	72.800000	49.400000	36.800000	Acetyl (+42)	990.480000	2.000000	0.000900	0.900000	1.000000	8.000000	0.446333	0.203267	0.456300	0.859450	0.378650	0.441300	NaN	NaN	3.655571	0.560932	0.294903	0.793427	0.999796	0.514156	0.659691	NaN	NaN	1.751759	0.780364	0.404529	0.174506	0.168476	0.891807	1.000000	0.169724	0.591645	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1	sp|P62847|RS24_HUMAN	RS24_HUMAN	40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1	99.800000	0.004670	15405.800000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.23945.23945.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23945"	MNDTVTIR	NaN	-	T	99.000000	57.800000	48.600000	46.500000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1016.480000	2.000000	-0.000370	-0.360000	1.000000	8.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1	sp|P62847|RS24_HUMAN	RS24_HUMAN	40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1	99.900000	0.031300	15405.800000	1.000000	4.000000	7.000000	Nsco_Tails_biological_replicate2_apoptosis.16317.16317.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16317"	MNDTVTIR	M[+42]NDTVTIR	-	T	99.000000	54.500000	50.200000	33.800000	Acetyl (+42), Label:13C(6) (+6)	996.500000	2.000000	0.000740	0.740000	1.000000	8.000000	0.446333	0.203267	0.456300	0.859450	0.378650	0.441300	NaN	NaN	3.655571	0.560932	0.294903	0.793427	0.999796	0.514156	0.659691	NaN	NaN	1.751759	0.780364	0.404529	0.174506	0.168476	1.000000	0.202358	0.169475	0.588634	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	FPPS_HUMAN	FPPS_HUMAN	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	100.000000	0.005760	48258.700000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.36010.36010.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36010"	MNGDQNSDVYAQEKQDFVQHFSQIVR	NaN	R	V	99.100000	73.000000	54.800000	73.000000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	3186.470000	3.000000	-0.005800	-1.800000	67.000000	92.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	FPPS_HUMAN	FPPS_HUMAN	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	100.000000	0.027700	48258.700000	3.000000	12.000000	21.000000	Spectrum66155 scans:40472,	MNGDQNSDVYAQEKQDFVQHFSQIVR	M[+42]NGDQNSDVYAQEKQDFVQHFSQIVR	R	V	99.600000	52.600000	52.000000	52.600000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	3162.500000	3.000000	-0.010000	-3.200000	67.000000	92.000000	76.163333	2.130033	0.315900	174.879250	91.951150	0.607750	NaN	NaN	NaN	95.718654	3.090289	0.549296	203.436673	124.857288	0.908513	NaN	NaN	NaN	149.577664	63.973789	0.000000	0.309193	0.000000	0.598382	0.169227	0.576891	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	FPPS_HUMAN	FPPS_HUMAN	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	100.000000	0.027700	48258.700000	3.000000	12.000000	21.000000	Spectrum66249 scans:40585,	MNGDQNSDVYAQEKQDFVQHFSQIVR	M[+42]NGDQNSDVYAQEKQDFVQHFSQIVR	R	V	99.700000	58.100000	50.800000	58.100000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	3170.480000	3.000000	-0.005100	-1.600000	67.000000	92.000000	76.163333	2.130033	0.315900	174.879250	91.951150	0.607750	NaN	NaN	NaN	95.718654	3.090289	0.549296	203.436673	124.857288	0.908513	NaN	NaN	NaN	149.577664	63.973789	0.000000	0.309193	0.000000	0.336966	0.169103	0.575456	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	FPPS_HUMAN	FPPS_HUMAN	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	100.000000	0.027700	48258.700000	3.000000	12.000000	21.000000	Spectrum64413 scans:38528,	MNGDQNSDVYAQEKQDFVQHFSQIVR	NaN	R	V	99.700000	69.100000	51.600000	69.100000	Oxidation (+16), Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	3178.500000	3.000000	-0.005300	-1.700000	67.000000	92.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	FPPS_HUMAN	FPPS_HUMAN	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	100.000000	0.004630	48258.700000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction6A.38582.38582.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38582"	MNGDQNSDVYAQEKQDFVQHFSQIVR	NaN	R	V	98.600000	67.100000	54.100000	67.100000	Oxidation (+16), Acetyl (+42), Dimethyl (+28)	3168.450000	3.000000	-0.002800	-0.870000	67.000000	92.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1	sp|Q9H4L7-2|SMRCD_HUMAN	SMRCD_HUMAN	Isoform 2 of SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1	96.000000	0.004480	117589.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.34981.34981.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34981"	MNLFNLDR	NaN	-	F	99.000000	52.200000	49.400000	20.300000	Acetyl (+42)	1063.510000	2.000000	0.000430	0.410000	1.000000	8.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3	PRS6A_HUMAN	PRS6A_HUMAN	26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3	100.000000	0.005010	49187.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33529.33529.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33529"	MNLLPNIESPVTR	NaN	-	Q	98.700000	51.900000	54.800000	39.300000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1550.800000	2.000000	0.001400	0.900000	1.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3	PRS6A_HUMAN	PRS6A_HUMAN	26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3	100.000000	0.005010	49187.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.41589.41589.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41589"	MNLLPNIESPVTR	M[+42]NLLPNIESPVTR	-	Q	99.700000	65.500000	54.900000	46.700000	Acetyl (+42)	1524.790000	2.000000	-0.002700	-1.800000	1.000000	13.000000	0.287900	0.530300	1.842000	0.663450	0.216050	0.331350	NaN	NaN	NaN	0.361820	0.769368	3.202921	0.771790	0.293367	0.495328	NaN	NaN	NaN	0.566805	0.531368	0.220917	0.268086	0.513107	0.318581	0.168365	0.552108	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1	tr|K7EQ02|K7EQ02_HUMAN	K7EQ02_HUMAN	DAZ-associated protein 1 (Fragment) OS=Homo sapiens GN=DAZAP1 PE=1 SV=1	98.200000	0.002630	0.000000	1.000000	2.000000	2.000000	Spectrum12889 scans:48267,	MNNSGADEIGKLF	NaN	-	V	99.600000	60.700000	46.800000	53.400000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1488.700000	2.000000	-0.001700	-1.200000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1	sp|Q96EP5|DAZP1_HUMAN	DAZP1_HUMAN	DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1	98.200000	0.002630	43365.000000	1.000000	2.000000	2.000000	Spectrum12920 scans:48411,	MNNSGADEIGKLF	NaN	-	V	98.900000	72.300000	47.400000	58.800000	Oxidation (+16), Acetyl (+42), Dimethyl:2H(4) (+32)	1484.710000	2.000000	-0.005700	-3.800000	1.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	General transcription factor 3C polypeptide 4 OS=Homo sapiens GN=GTF3C4 PE=1 SV=2	TF3C4_HUMAN	TF3C4_HUMAN	General transcription factor 3C polypeptide 4 OS=Homo sapiens GN=GTF3C4 PE=1 SV=2	95.700000	0.002630	91965.000000	1.000000	2.000000	2.000000	Spectrum148 scans:7962,	MNTADQAR	NaN	-	V	99.000000	64.600000	40.100000	44.000000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	973.420000	2.000000	-0.000150	-0.160000	1.000000	8.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	General transcription factor 3C polypeptide 4 OS=Homo sapiens GN=GTF3C4 PE=1 SV=2	TF3C4_HUMAN	TF3C4_HUMAN	General transcription factor 3C polypeptide 4 OS=Homo sapiens GN=GTF3C4 PE=1 SV=2	99.500000	0.002500	91965.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.2837.2837.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2837"	MNTADQAR	NaN	-	V	99.000000	55.800000	42.900000	38.900000	Oxidation (+16), Acetyl (+42)	963.410000	2.000000	-0.002600	-2.700000	1.000000	8.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Costars family protein ABRACL OS=Homo sapiens GN=RP11-501K14.2 PE=2 SV=1	Q5SZC9_HUMAN	Q5SZC9_HUMAN	Costars family protein ABRACL OS=Homo sapiens GN=RP11-501K14.2 PE=2 SV=1	97.200000	0.005760	7498.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.35575.35575.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35575"	MNVDHEVNLLVEEIHR	NaN	-	L	99.700000	64.700000	54.800000	61.200000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	2013.980000	2.000000	-0.000970	-0.480000	1.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Costars family protein ABRACL OS=Homo sapiens GN=RP11-501K14.2 PE=2 SV=1	Q5SZC9_HUMAN	Q5SZC9_HUMAN	Costars family protein ABRACL OS=Homo sapiens GN=RP11-501K14.2 PE=2 SV=1	98.000000	0.009440	7498.700000	1.000000	3.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64439.64439.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64439"	MNVDHEVNLLVEEIHR	M[+42]NVDHEVNLLVEEIHR	-	L	99.700000	79.400000	55.200000	61.100000	Acetyl (+42)	1987.980000	3.000000	-0.000610	-0.310000	1.000000	16.000000	0.691933	0.357067	0.515367	0.940000	2.011700	1.420450	NaN	NaN	NaN	0.869591	0.518038	0.896134	1.093500	2.731618	2.123402	NaN	NaN	NaN	0.981545	1.624828	0.072300	0.380685	0.075137	1.000000	0.167028	0.523379	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Costars family protein ABRACL OS=Homo sapiens GN=RP11-501K14.2 PE=2 SV=1	Q5SZC9_HUMAN	Q5SZC9_HUMAN	Costars family protein ABRACL OS=Homo sapiens GN=RP11-501K14.2 PE=2 SV=1	98.000000	0.009440	7498.700000	1.000000	3.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64440.64440.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64440"	MNVDHEVNLLVEEIHR	M[+42]NVDHEVNLLVEEIHR	-	L	99.700000	80.500000	55.400000	70.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1997.990000	3.000000	-0.000920	-0.460000	1.000000	16.000000	0.691933	0.357067	0.515367	0.940000	2.011700	1.420450	NaN	NaN	NaN	0.869591	0.518038	0.896134	1.093500	2.731618	2.123402	NaN	NaN	NaN	0.981545	1.624828	0.072300	0.380685	0.129722	1.000000	0.166547	0.522197	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Costars family protein ABRACL OS=Homo sapiens GN=RP11-501K14.2 PE=2 SV=1	Q5SZC9_HUMAN	Q5SZC9_HUMAN	Costars family protein ABRACL OS=Homo sapiens GN=RP11-501K14.2 PE=2 SV=1	97.300000	0.001320	7498.700000	1.000000	1.000000	1.000000	Spectrum63960 scans:38018,	MNVDHEVNLLVEEIHR	NaN	-	L	99.400000	41.000000	51.200000	24.200000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	2009.990000	3.000000	-0.003400	-1.700000	1.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Costars family protein ABRACL OS=Homo sapiens GN=RP11-501K14.2 PE=2 SV=1	Q5SZC9_HUMAN	Q5SZC9_HUMAN	Costars family protein ABRACL OS=Homo sapiens GN=RP11-501K14.2 PE=2 SV=1	97.700000	0.007000	7498.700000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.55277.55277.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=55277"	MNVDHEVNLLVEEIHR	NaN	-	L	99.700000	82.900000	54.200000	79.900000	Oxidation (+16), Acetyl (+42)	2003.970000	2.000000	-0.008100	-4.000000	1.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum53974 scans:26074,	MPKVQQTVQDLFGR	NaN	R	A	99.700000	50.500000	52.600000	38.400000	Oxidation (+16), Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1727.960000	3.000000	-0.003100	-1.800000	392.000000	405.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum54056 scans:26164,	MPKVQQTVQDLFGR	NaN	R	A	99.700000	68.100000	52.600000	60.400000	Oxidation (+16), Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1735.940000	3.000000	0.000900	0.520000	392.000000	405.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.037300	19463.200000	7.000000	13.000000	16.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.59228.59228.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=59228"	MPPYTVVYFPVR	M[+28]PPYTVVYFPVR	-	G	98.700000	59.500000	55.100000	47.000000	Dimethyl (+28)	1495.790000	3.000000	0.002200	1.500000	1.000000	12.000000	0.423867	0.300967	1.009433	3.416950	NaN	NaN	NaN	NaN	NaN	0.532697	0.436648	1.755231	3.974931	NaN	NaN	NaN	NaN	NaN	2.253814	0.436648	0.415189	NaN	1.000000	NaN	0.165593	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.016500	99012.600000	2.000000	6.000000	7.000000	NSco_TAILS_20150124_Protein_complex_100Kda.35726.35726.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35726"	MQDAENVAVPEAAEER	NaN	-	A	99.700000	112.000000	46.000000	107.000000	Oxidation (+16), Acetyl (+42)	1815.790000	2.000000	-0.009100	-5.000000	1.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.027700	99012.600000	5.000000	14.000000	21.000000	Spectrum7990 scans:30159,	MQDAENVAVPEAAEER	NaN	-	A	99.700000	88.100000	44.500000	77.200000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	1821.810000	2.000000	-0.003700	-2.000000	1.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.027700	99012.600000	5.000000	14.000000	21.000000	Spectrum19988 scans:14379,	MQDAENVAVPEAAEER	NaN	-	A	99.700000	99.000000	43.700000	79.700000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1825.800000	2.000000	0.000990	0.540000	1.000000	16.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.035100	99012.600000	6.000000	11.000000	14.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.24025.24025.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24025"	MQDAENVAVPEAAEER	M[+28]QDAENVAVPEAAEER	-	A	99.700000	69.000000	48.100000	58.700000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1809.810000	2.000000	-0.002500	-1.400000	1.000000	16.000000	1.749200	3.621500	19.793500	NaN	NaN	NaN	NaN	NaN	NaN	2.198316	5.254135	34.417493	NaN	NaN	NaN	NaN	NaN	NaN	2.198316	5.254135	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.035800	99012.600000	4.000000	8.000000	8.000000	Nsco_Tails_biological_replicate2_apoptosis.20913.20913.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20913"	MQDAENVAVPEAAEER	M[+28]QDAENVAVPEAAEER	-	A	99.700000	69.000000	50.100000	63.200000	Acetyl (+42), Label:13C(6) (+6)	1805.830000	2.000000	0.005700	3.100000	1.000000	16.000000	1.749200	3.621500	19.793500	NaN	NaN	NaN	NaN	NaN	NaN	2.198316	5.254135	34.417493	NaN	NaN	NaN	NaN	NaN	NaN	2.198316	5.254135	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.035800	99012.600000	4.000000	8.000000	8.000000	Nsco_Tails_biological_replicate2_apoptosis.20868.20868.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20868"	MQDAENVAVPEAAEER	M[+28]QDAENVAVPEAAEER	-	A	99.700000	84.200000	48.000000	77.000000	Acetyl (+42)	1799.800000	2.000000	-0.000600	-0.340000	1.000000	16.000000	1.749200	3.621500	19.793500	NaN	NaN	NaN	NaN	NaN	NaN	2.198316	5.254135	34.417493	NaN	NaN	NaN	NaN	NaN	NaN	2.198316	5.254135	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Phosducin-like protein 3 OS=Homo sapiens GN=PDCL3 PE=1 SV=1	PDCL3_HUMAN	PDCL3_HUMAN	Phosducin-like protein 3 OS=Homo sapiens GN=PDCL3 PE=1 SV=1	98.900000	0.007510	27597.500000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38605.38605.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38605"	MQDPNADTEWNDILR	M[+42]QDPNADTEWNDILR	-	K	99.700000	86.300000	46.300000	86.300000	Acetyl (+42)	1858.810000	2.000000	-0.010000	-5.600000	1.000000	15.000000	1.457400	0.440100	0.302000	0.562900	0.423600	0.753250	NaN	NaN	NaN	1.831595	0.638505	0.525126	0.654820	0.575192	1.126018	NaN	NaN	NaN	1.243208	0.606848	0.281415	0.033179	1.000000	0.036973	0.164299	0.414576	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Phosducin-like protein 3 OS=Homo sapiens GN=PDCL3 PE=1 SV=1	PDCL3_HUMAN	PDCL3_HUMAN	Phosducin-like protein 3 OS=Homo sapiens GN=PDCL3 PE=1 SV=1	98.900000	0.004480	27597.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.29610.29610.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29610"	MQDPNADTEWNDILR	NaN	-	K	99.700000	85.700000	46.300000	50.500000	Oxidation (+16), Acetyl (+42)	1874.810000	2.000000	0.002300	1.200000	1.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.054700	9093.600000	2.000000	5.000000	19.000000	Nsco_Tails_biological_replicate1_apoptosis.41274.41274.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41274"	MQNDAGEFVDLYVPR	MQNDAGEFVDLYVPR	-	K	99.700000	134.000000	50.300000	125.000000	Acetyl (+42)	1794.820000	2.000000	-0.001400	-0.770000	1.000000	15.000000	NaN	0.900867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.306993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.306993	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.175000	9093.600000	3.000000	19.000000	133.000000	Spectrum67957 scans:42559,	MQNDAGEFVDLYVPR	NaN	-	K	99.700000	134.000000	46.600000	126.000000	Oxidation (+16), Acetyl (+42), Label:13C(6) (+6)	1816.830000	2.000000	-0.005700	-3.100000	1.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.175000	9093.600000	3.000000	19.000000	133.000000	Spectrum69432 scans:44343,	MQNDAGEFVDLYVPR	MQNDAGEFVDLYVPR	-	K	99.700000	127.000000	47.800000	118.000000	Acetyl (+42), Label:13C(6) (+6)	1800.840000	2.000000	-0.001100	-0.620000	1.000000	15.000000	NaN	0.900867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.306993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.306993	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.175000	9093.600000	3.000000	19.000000	133.000000	Spectrum13182 scans:48936,	MQNDAGEFVDLYVPR	NaN	-	K	99.700000	149.000000	45.300000	140.000000	Oxidation (+16), Acetyl (+42)	1810.820000	2.000000	-0.003600	-2.000000	1.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.170000	9093.600000	2.000000	9.000000	68.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.39746.39746.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39746"	MQNDAGEFVDLYVPR	NaN	-	K	99.700000	107.000000	49.700000	93.100000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1820.830000	2.000000	-0.001400	-0.780000	1.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.170000	9093.600000	2.000000	9.000000	68.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.42057.42057.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42057"	MQNDAGEFVDLYVPR	MQNDAGEFVDLYVPR	-	K	99.700000	126.000000	50.600000	123.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1804.830000	2.000000	-0.001900	-1.000000	1.000000	15.000000	NaN	0.900867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.306993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.306993	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.018700	9093.600000	3.000000	7.000000	8.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.57685.57685.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=57685"	MQNDAGEFVDLYVPR	MQNDAGEFVDLYVPR	-	K	99.000000	51.800000	50.500000	43.500000		1752.810000	2.000000	-0.004600	-2.600000	1.000000	15.000000	NaN	0.900867	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.306993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.306993	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Ubiquitin-like-conjugating enzyme ATG3 OS=Homo sapiens GN=ATG3	sp|Q9NT62-2|ATG3_HUMAN	ATG3_HUMAN	Isoform 2 of Ubiquitin-like-conjugating enzyme ATG3 OS=Homo sapiens GN=ATG3	98.800000	0.005270	35448.900000	1.000000	2.000000	4.000000	Spectrum44671 scans:15448,	MQNVINTVKGK	NaN	-	A	98.600000	51.700000	50.300000	44.700000	Oxidation (+16), Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1352.790000	2.000000	-0.001700	-1.200000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Ubiquitin-like-conjugating enzyme ATG3 OS=Homo sapiens GN=ATG3	sp|Q9NT62-2|ATG3_HUMAN	ATG3_HUMAN	Isoform 2 of Ubiquitin-like-conjugating enzyme ATG3 OS=Homo sapiens GN=ATG3	98.800000	0.005270	35448.900000	1.000000	2.000000	4.000000	Spectrum56436 scans:28922,	MQNVINTVKGK	NaN	-	A	99.700000	78.400000	50.800000	68.900000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1360.770000	2.000000	-0.002400	-1.800000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform 2 of Ubiquitin-like-conjugating enzyme ATG3 OS=Homo sapiens GN=ATG3	sp|Q9NT62-2|ATG3_HUMAN	ATG3_HUMAN	Isoform 2 of Ubiquitin-like-conjugating enzyme ATG3 OS=Homo sapiens GN=ATG3	96.200000	0.009250	35448.900000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction6A.15446.15446.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15446"	MQNVINTVKGK	M[+42]QNVINTVKGK	-	A	99.700000	73.000000	54.700000	66.500000	Oxidation (+16), Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	1344.750000	2.000000	0.001800	1.300000	1.000000	11.000000	1.524233	0.736833	0.370167	2.692400	0.996350	0.316150	NaN	NaN	NaN	1.915588	1.069011	0.643656	3.132063	1.352909	0.472606	NaN	NaN	NaN	2.523826	1.210960	0.150553	0.074286	0.406553	0.169699	0.161208	0.347347	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Prostaglandin E synthase 3 OS=Homo sapiens GN=PTGES3 PE=1 SV=1	TEBP_HUMAN	TEBP_HUMAN	Prostaglandin E synthase 3 OS=Homo sapiens GN=PTGES3 PE=1 SV=1	97.200000	0.020200	18679.900000	1.000000	3.000000	7.000000	Nsco_Tails_biological_replicate1_apoptosis.15302.15302.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15302"	MQPASAKWYDR	NaN	-	R	99.400000	56.500000	52.500000	46.000000	Oxidation (+16), Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1447.710000	2.000000	-0.003200	-2.200000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Prostaglandin E synthase 3 OS=Homo sapiens GN=PTGES3 PE=1 SV=1	TEBP_HUMAN	TEBP_HUMAN	Prostaglandin E synthase 3 OS=Homo sapiens GN=PTGES3 PE=1 SV=1	100.000000	0.007900	18679.900000	1.000000	2.000000	6.000000	Spectrum50205 scans:21794,	MQPASAKWYDR	M[+42]QPASAKWYDR	-	R	99.600000	61.400000	48.100000	49.300000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1439.700000	2.000000	-0.001700	-1.200000	1.000000	11.000000	246.554933	98.261267	0.392000	246.808300	93.338700	0.380200	NaN	NaN	NaN	309.859160	142.559145	0.681621	287.111589	126.741395	0.568353	NaN	NaN	NaN	298.485375	134.650270	0.000000	0.000000	0.000000	0.000000	0.160648	0.341704	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Prostaglandin E synthase 3 OS=Homo sapiens GN=PTGES3 PE=1 SV=1	TEBP_HUMAN	TEBP_HUMAN	Prostaglandin E synthase 3 OS=Homo sapiens GN=PTGES3 PE=1 SV=1	100.000000	0.007900	18679.900000	1.000000	2.000000	6.000000	Spectrum46601 scans:17650,	MQPASAKWYDR	NaN	-	R	99.700000	67.700000	47.200000	57.000000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1455.690000	2.000000	-0.002000	-1.400000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Prostaglandin E synthase 3 OS=Homo sapiens GN=PTGES3 PE=1 SV=1	TEBP_HUMAN	TEBP_HUMAN	Prostaglandin E synthase 3 OS=Homo sapiens GN=PTGES3 PE=1 SV=1	98.400000	0.026900	18679.900000	1.000000	4.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.17916.17916.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17916"	MQPASAKWYDR	M[+42]QPASAKWYDR	-	R	98.800000	51.200000	53.200000	41.800000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1431.720000	2.000000	-0.001100	-0.770000	1.000000	11.000000	246.554933	98.261267	0.392000	246.808300	93.338700	0.380200	NaN	NaN	NaN	309.859160	142.559145	0.681621	287.111589	126.741395	0.568353	NaN	NaN	NaN	298.485375	134.650270	0.000000	0.000000	0.000000	0.000000	0.160425	0.339697	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Prostaglandin E synthase 3 OS=Homo sapiens GN=PTGES3 PE=1 SV=1	TEBP_HUMAN	TEBP_HUMAN	Prostaglandin E synthase 3 OS=Homo sapiens GN=PTGES3 PE=1 SV=1	100.000000	0.011600	18679.900000	1.000000	2.000000	5.000000	Nsco_Tails_biological_replicate_3_fraction6A.17163.17163.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17163"	MQPASAKWYDR	NaN	-	R	99.700000	65.100000	49.700000	43.500000	Oxidation (+16), Acetyl (+42), Dimethyl (+28)	1437.670000	2.000000	-0.002100	-1.500000	1.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	AL9A1_HUMAN	AL9A1_HUMAN	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	100.000000	0.018400	53784.000000	4.000000	9.000000	14.000000	Spectrum56009 scans:28405,	MSTGTFVVSQPLNYR	M[+28]STGTFVVSQPLNYR	-	G	98.900000	94.900000	51.800000	75.000000	Dimethyl (+28), Label:13C(6) (+6)	1732.900000	2.000000	0.006400	3.700000	1.000000	15.000000	0.730467	0.341867	0.473567	1.154250	1.000650	0.848550	NaN	NaN	NaN	0.918018	0.495986	0.823451	1.342737	1.358748	1.268480	NaN	NaN	NaN	1.130377	0.927367	0.118221	0.277181	0.294281	0.282888	0.160092	0.328132	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	AL9A1_HUMAN	AL9A1_HUMAN	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	100.000000	0.018400	53784.000000	4.000000	9.000000	14.000000	Spectrum52969 scans:24966,	MSTGTFVVSQPLNYR	NaN	-	G	99.700000	85.900000	51.200000	72.200000	Oxidation (+16), Dimethyl (+28), Label:13C(6) (+6)	1748.890000	2.000000	-0.000350	-0.200000	1.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	GUAA_HUMAN	GUAA_HUMAN	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	100.000000	0.013200	76698.700000	5.000000	10.000000	10.000000	Spectrum33633 scans:2730,	MTTSPEEKR	M[+28]TTSPEEKR	N	K	99.500000	36.300000	48.800000	17.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1151.600000	3.000000	0.000680	0.590000	329.000000	337.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4	sp|O75083|WDR1_HUMAN	WDR1_HUMAN	WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4	100.000000	0.002330	66175.200000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.52016.52016.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=52016"	MTVDESGQLISCSMDDTVR	M[+28]TVDESGQLISC[+57]SMDDTVR	R	Y	99.700000	92.100000	48.600000	90.700000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2180.970000	2.000000	0.002400	1.100000	371.000000	389.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of CDKN2AIP N-terminal-like protein OS=Homo sapiens GN=CDKN2AIPNL	sp|Q96HQ2|C2AIL_HUMAN	C2AIL_HUMAN	CDKN2AIP N-terminal-like protein OS=Homo sapiens GN=CDKN2AIPNL PE=1 SV=1	100.000000	0.005760	13178.100000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.48372.48372.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=48372"	MVGGEAAAAVEELVSGVR	NaN	-	Q	99.700000	120.000000	55.100000	109.000000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	1811.910000	2.000000	0.009100	5.000000	1.000000	18.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of CDKN2AIP N-terminal-like protein OS=Homo sapiens GN=CDKN2AIPNL	sp|Q96HQ2-2|C2AIL_HUMAN	C2AIL_HUMAN	Isoform 2 of CDKN2AIP N-terminal-like protein OS=Homo sapiens GN=CDKN2AIPNL	100.000000	0.005760	9490.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.48338.48338.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=48338"	MVGGEAAAAVEELVSGVR	NaN	-	Q	99.700000	103.000000	54.200000	92.100000	Oxidation (+16), Acetyl (+42)	1801.880000	2.000000	-0.003100	-1.700000	1.000000	18.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	sp|P26368|U2AF2_HUMAN	U2AF2_HUMAN	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4	100.000000	0.038200	53483.100000	5.000000	10.000000	29.000000	Spectrum70873 scans:46238,	MVLPEELLDDEEYEEIVEDVR	NaN	N	D	99.700000	57.500000	50.800000	51.300000	Oxidation (+16), Dimethyl (+28), Label:13C(6) (+6)	2613.240000	3.000000	0.001700	0.630000	383.000000	403.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosyl pyrophosphate synthetase 1 OS=Homo sapiens GN=PRPS1 PE=3 SV=1	PRPS1_HUMAN	PRPS1_HUMAN	Ribose-phosphate pyrophosphokinase 1 OS=Homo sapiens GN=PRPS1 PE=1 SV=2	100.000000	0.001320	34816.700000	1.000000	1.000000	1.000000	Spectrum43428 scans:14006,	MVLVGDVKDR	NaN	R	V	99.500000	36.900000	50.000000	15.400000	Oxidation (+16), Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1220.690000	3.000000	0.000380	0.310000	205.000000	214.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.040300	19463.200000	5.000000	11.000000	14.000000	Nsco_Tails_biological_replicate1_apoptosis.11535.11535.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11535"	MVNDGVEDLR	NaN	D	C	99.700000	78.000000	49.000000	57.200000	Oxidation (+16), Dimethyl (+28)	1190.560000	2.000000	-0.002100	-1.700000	92.000000	101.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.037300	19463.200000	7.000000	13.000000	16.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.24161.24161.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24161"	MVNDGVEDLR	NaN	D	C	99.700000	58.700000	49.300000	36.000000	Oxidation (+16), Dimethyl (+28), Label:13C(6)15N(4) (+10)	1200.570000	2.000000	-0.001400	-1.200000	92.000000	101.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum51226 scans:22949,	MVNFTVDQIR	NaN	-	A	99.300000	57.700000	49.000000	29.700000	Oxidation (+16), Dimethyl (+28), Label:13C(6)15N(4) (+10)	1275.650000	2.000000	0.000290	0.230000	1.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum51447 scans:23213,	MVNFTVDQIR	NaN	-	A	99.700000	75.200000	49.600000	47.500000	Oxidation (+16), Dimethyl (+28), Label:13C(6) (+6)	1271.660000	2.000000	-0.000350	-0.270000	1.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum51463 scans:23233,	MVNFTVDQIR	NaN	-	A	99.700000	80.200000	48.800000	49.700000	Oxidation (+16), Dimethyl (+28)	1265.640000	2.000000	-0.001300	-1.100000	1.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.045100	95322.100000	5.000000	10.000000	18.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.28002.28002.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28002"	MVNFTVDQIR	NaN	-	A	99.700000	66.400000	50.500000	46.700000	Oxidation (+16), Acetyl (+42)	1279.620000	2.000000	-0.006900	-5.400000	1.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.009330	95322.100000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.44604.44604.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44604"	MVNFTVDQIR	M[+28]VNFTVDQIR	-	A	99.000000	53.700000	52.900000	27.900000	Dimethyl (+28)	1249.650000	2.000000	-0.002200	-1.800000	1.000000	10.000000	0.590267	0.224333	0.379033	0.728500	0.531900	0.737400	NaN	NaN	NaN	0.741821	0.325467	0.659074	0.847463	0.722249	1.102325	NaN	NaN	NaN	0.794642	0.523858	0.042255	0.230470	1.000000	1.000000	0.156624	0.300043	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	PPIA_HUMAN	PPIA_HUMAN	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	100.000000	0.124000	17994.900000	3.000000	14.000000	43.000000	Nsco_Tails_biological_replicate1_apoptosis.53390.53390.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=53390"	MVNPTVFFDIAVDGEPLGR	M[+42]VNPTVFFDIAVDGEPLGR	-	V	99.700000	76.200000	56.200000	72.700000	Acetyl (+42), Label:13C(6)15N(4) (+10)	2128.060000	2.000000	0.001400	0.640000	1.000000	19.000000	3.333700	0.933167	0.461633	NaN	NaN	NaN	NaN	NaN	NaN	4.189644	1.353854	0.802701	NaN	NaN	NaN	NaN	NaN	NaN	4.189644	1.353854	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	PPIA_HUMAN	PPIA_HUMAN	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	100.000000	0.124000	17994.900000	3.000000	14.000000	43.000000	Nsco_Tails_biological_replicate1_apoptosis.53527.53527.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=53527"	MVNPTVFFDIAVDGEPLGR	M[+42]VNPTVFFDIAVDGEPLGR	-	V	99.700000	96.300000	56.000000	93.100000	Acetyl (+42)	2118.050000	2.000000	0.000490	0.230000	1.000000	19.000000	3.333700	0.933167	0.461633	NaN	NaN	NaN	NaN	NaN	NaN	4.189644	1.353854	0.802701	NaN	NaN	NaN	NaN	NaN	NaN	4.189644	1.353854	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	PPIA_HUMAN	PPIA_HUMAN	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	100.000000	0.028000	17994.900000	3.000000	11.000000	12.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.63945.63945.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=63945"	MVNPTVFFDIAVDGEPLGR	NaN	-	V	99.700000	105.000000	55.500000	103.000000	Oxidation (+16), Acetyl (+42)	2134.040000	2.000000	0.003400	1.600000	1.000000	19.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	PPIA_HUMAN	PPIA_HUMAN	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	100.000000	0.028000	17994.900000	3.000000	11.000000	12.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.63948.63948.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=63948"	MVNPTVFFDIAVDGEPLGR	NaN	-	V	99.700000	115.000000	55.400000	107.000000	Oxidation (+16), Acetyl (+42), Label:13C(6)15N(4) (+10)	2144.050000	2.000000	-0.002900	-1.300000	1.000000	19.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum38254 scans:8014,	MVQEDLEKTR	MVQEDLEKTR	Q	A	99.600000	39.700000	50.100000	27.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1321.700000	3.000000	0.000900	0.680000	451.000000	460.000000	NaN	NaN	1.837800	1.481700	0.580500	1.701800	NaN	NaN	NaN	NaN	NaN	3.195618	1.723659	0.788241	2.543987	NaN	NaN	NaN	1.723659	0.788241	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum38242 scans:8001,	MVQEDLEKTR	MVQEDLEKTR	Q	A	99.600000	39.300000	50.500000	22.100000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1313.730000	3.000000	0.000590	0.450000	451.000000	460.000000	NaN	NaN	1.837800	1.481700	0.580500	1.701800	NaN	NaN	NaN	NaN	NaN	3.195618	1.723659	0.788241	2.543987	NaN	NaN	NaN	1.723659	0.788241	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4	RL10_HUMAN	RL10_HUMAN	60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4	100.000000	0.007900	24586.600000	2.000000	6.000000	6.000000	Spectrum13043 scans:48782,	MVSDEYEQLSSEALEAAR	NaN	H	I	98.800000	29.800000	45.200000	18.900000	Acetyl (+42)	2068.920000	3.000000	-0.002300	-1.100000	52.000000	69.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4	RL10_HUMAN	RL10_HUMAN	60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4	100.000000	0.007900	24586.600000	2.000000	6.000000	6.000000	Spectrum12219 scans:44168,	MVSDEYEQLSSEALEAAR	NaN	H	I	99.700000	128.000000	46.500000	114.000000	Oxidation (+16), Dimethyl (+28), Label:13C(6)15N(4) (+10)	2080.950000	2.000000	-0.004400	-2.100000	52.000000	69.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4	RL10_HUMAN	RL10_HUMAN	60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4	100.000000	0.007900	24586.600000	2.000000	6.000000	6.000000	Spectrum12214 scans:44150,	MVSDEYEQLSSEALEAAR	NaN	H	I	99.700000	139.000000	46.200000	130.000000	Oxidation (+16), Dimethyl (+28)	2070.940000	2.000000	-0.003500	-1.700000	52.000000	69.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4	RL10_HUMAN	RL10_HUMAN	60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4	97.800000	0.002330	24586.600000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.56671.56671.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=56671"	MVSDEYEQLSSEALEAAR	M[+28]VSDEYEQLSSEALEAAR	H	I	99.700000	79.300000	49.800000	77.500000	Dimethyl (+28)	2054.930000	2.000000	-0.021000	-10.000000	52.000000	69.000000	0.379033	0.259000	0.957167	NaN	NaN	NaN	NaN	NaN	NaN	0.476352	0.375762	1.664348	NaN	NaN	NaN	NaN	NaN	NaN	0.476352	0.375762	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Histidine triad nucleotide-binding protein 1 OS=Homo sapiens GN=HINT1 PE=1 SV=2	HINT1_HUMAN	HINT1_HUMAN	Histidine triad nucleotide-binding protein 1 OS=Homo sapiens GN=HINT1 PE=1 SV=2	100.000000	0.007000	13784.100000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.33336.33336.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33336"	MVVNEGSDGGQSVY	M[+28]VVNEGSDGGQSVY	R	H	99.700000	68.500000	46.300000	68.500000	Dimethyl (+28)	1468.650000	2.000000	-0.005000	-3.400000	96.000000	109.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2	sp|Q13303|KCAB2_HUMAN	KCAB2_HUMAN	Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2	99.500000	0.008960	40983.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.7868.7868.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7868"	MYPESTTGSPAR	M[+28]YPESTTGSPAR	-	L	99.500000	52.500000	49.200000	48.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1333.620000	2.000000	-0.001300	-0.950000	1.000000	12.000000	0.382567	NaN	NaN	0.852150	0.342700	0.408350	NaN	NaN	2.884843	0.480793	NaN	NaN	0.991304	0.465340	0.610434	NaN	NaN	1.382424	0.736048	0.465340	0.212513	NaN	0.997861	NaN	0.154017	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2	sp|Q13303|KCAB2_HUMAN	KCAB2_HUMAN	Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2	99.500000	0.008960	40983.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.7871.7871.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7871"	MYPESTTGSPAR	M[+28]YPESTTGSPAR	-	L	99.700000	58.800000	48.900000	55.900000	Dimethyl (+28)	1323.610000	2.000000	-0.000670	-0.500000	1.000000	12.000000	0.382567	NaN	NaN	0.852150	0.342700	0.408350	NaN	NaN	2.884843	0.480793	NaN	NaN	0.991304	0.465340	0.610434	NaN	NaN	1.382424	0.736048	0.465340	0.212513	NaN	0.234548	NaN	0.153914	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform B of AP-2 complex subunit alpha-1 OS=Homo sapiens GN=AP2A1	sp|O95782-2|AP2A1_HUMAN	AP2A1_HUMAN	Isoform B of AP-2 complex subunit alpha-1 OS=Homo sapiens GN=AP2A1	100.000000	0.001320	105346.200000	1.000000	1.000000	1.000000	Spectrum2792 scans:16861,	NADVELQQR	N[+28]ADVELQQR	R	A	99.700000	63.900000	48.800000	39.900000	Dimethyl (+28), Label:13C(6) (+6)	1105.580000	2.000000	-0.001100	-1.000000	571.000000	579.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.123000	57471.900000	10.000000	25.000000	49.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.25681.25681.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25681"	NAGYDSADLVAQLR	N[+28]AGYDSADLVAQLR	D	A	99.700000	95.200000	53.600000	85.200000	Dimethyl (+28)	1519.760000	2.000000	-0.003500	-2.300000	453.000000	466.000000	0.661267	0.342433	0.520000	0.662350	0.417550	0.630350	NaN	NaN	NaN	0.831050	0.496808	0.904191	0.770510	0.566977	0.942298	NaN	NaN	NaN	0.800780	0.531892	0.024053	0.041931	0.035638	0.047503	0.153302	0.248746	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.123000	57471.900000	10.000000	25.000000	49.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.25677.25677.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25677"	NAGYDSADLVAQLR	N[+28]AGYDSADLVAQLR	D	A	99.700000	119.000000	53.600000	111.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1529.770000	2.000000	-0.006000	-3.900000	453.000000	466.000000	0.661267	0.342433	0.520000	0.662350	0.417550	0.630350	NaN	NaN	NaN	0.831050	0.496808	0.904191	0.770510	0.566977	0.942298	NaN	NaN	NaN	0.800780	0.531892	0.024053	0.041931	0.035623	0.141401	0.153201	0.248478	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	LRC47_HUMAN	LRC47_HUMAN	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	100.000000	0.029000	63456.700000	4.000000	13.000000	22.000000	Spectrum63225 scans:37201,	NALGPGLSPELGPLPALR	N[+28]ALGPGLSPELGPLPALR	R	V	99.700000	86.800000	52.600000	73.100000	Dimethyl (+28)	1799.030000	2.000000	-0.001600	-0.890000	85.000000	102.000000	1.120233	0.592900	3.392700	NaN	NaN	NaN	NaN	NaN	NaN	1.407859	0.860190	5.899322	NaN	NaN	NaN	NaN	NaN	NaN	1.407859	0.860190	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	LRC47_HUMAN	LRC47_HUMAN	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	100.000000	0.032400	63456.700000	3.000000	8.000000	14.000000	Nsco_Tails_biological_replicate_3_fraction6A.37234.37234.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37234"	NALGPGLSPELGPLPALR	N[+28]ALGPGLSPELGPLPALR	R	V	99.700000	79.800000	57.400000	73.400000	Dimethyl (+28), Label:13C(6) (+6)	1805.040000	2.000000	-0.011000	-6.000000	85.000000	102.000000	1.120233	0.592900	3.392700	NaN	NaN	NaN	NaN	NaN	NaN	1.407859	0.860190	5.899322	NaN	NaN	NaN	NaN	NaN	NaN	1.407859	0.860190	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit C OS=Homo sapiens GN=EIF3C PE=1 SV=1	EIF3C_HUMAN	EIF3C_HUMAN	Eukaryotic translation initiation factor 3 subunit C OS=Homo sapiens GN=EIF3C PE=1 SV=1	100.000000	0.006590	105329.200000	4.000000	5.000000	5.000000	Spectrum8589 scans:31917,	NALLDIQSSGR	N[+28]ALLDIQSSGR	H	A	99.600000	61.600000	49.700000	45.300000	Dimethyl (+28)	1200.650000	2.000000	-0.000880	-0.730000	631.000000	641.000000	1.371267	0.766533	0.516033	0.276150	1.127450	3.452500	NaN	NaN	NaN	1.723346	1.112100	0.897293	0.321245	1.530925	5.161073	NaN	NaN	NaN	1.022296	1.321513	0.382676	0.100050	1.000000	0.307777	0.152897	0.246099	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	RS8_HUMAN	RS8_HUMAN	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	100.000000	0.015800	24188.400000	4.000000	9.000000	12.000000	Spectrum15596 scans:4904,	NASNNELVR	N[+28]ASNNELVR	Y	T	98.900000	51.500000	47.800000	30.800000	Dimethyl (+28)	1043.540000	2.000000	0.000360	0.340000	84.000000	92.000000	0.301267	0.155200	0.593600	11.507900	0.336900	0.054850	NaN	NaN	NaN	0.378618	0.225167	1.032168	13.387116	0.457465	0.081994	NaN	NaN	NaN	6.882867	0.341316	0.475908	0.208815	1.000000	0.641795	0.152796	0.241475	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	RS8_HUMAN	RS8_HUMAN	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	100.000000	0.015800	24188.400000	4.000000	9.000000	12.000000	Spectrum1346 scans:12811,	NASNNELVR	N[+28]ASNNELVR	Y	T	99.000000	52.300000	48.400000	26.400000	Dimethyl (+28), Label:13C(6) (+6)	1049.560000	2.000000	-0.000370	-0.350000	84.000000	92.000000	0.301267	0.155200	0.593600	11.507900	0.336900	0.054850	NaN	NaN	NaN	0.378618	0.225167	1.032168	13.387116	0.457465	0.081994	NaN	NaN	NaN	6.882867	0.341316	0.475908	0.208815	1.000000	0.756354	0.152695	0.225691	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	HSP74_HUMAN	HSP74_HUMAN	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	100.000000	0.009440	94313.900000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.54470.54470.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=54470"	NDAKNAVEEYVYEMR	N[+28]DAKNAVEEYVYEMR	R	D	99.400000	64.000000	53.300000	63.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1903.910000	3.000000	0.000920	0.480000	615.000000	629.000000	2.491333	2.250233	1.471333	0.166100	3.293250	4.027050	NaN	NaN	NaN	3.130996	3.264677	2.558396	0.193224	4.471790	6.019957	NaN	NaN	NaN	1.662110	3.868234	0.460762	0.098537	1.000000	0.252527	0.152595	0.225471	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	HSP74_HUMAN	HSP74_HUMAN	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	100.000000	0.014000	94313.900000	5.000000	6.000000	6.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.52866.52866.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=52866"	NDAKNAVEEYVYEMR	N[+28]DAKNAVEEYVYEMR	R	D	99.600000	65.300000	52.200000	57.000000	Dimethyl (+28), Dimethyl (+28)	1885.890000	3.000000	-0.000740	-0.390000	615.000000	629.000000	2.491333	2.250233	1.471333	0.166100	3.293250	4.027050	NaN	NaN	NaN	3.130996	3.264677	2.558396	0.193224	4.471790	6.019957	NaN	NaN	NaN	1.662110	3.868234	0.460762	0.098537	0.547549	0.252341	0.152494	0.225252	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.034600	16100.700000	6.000000	12.000000	12.000000	Nsco_Tails_biological_replicate1_apoptosis.46381.46381.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46381"	NDFQLIGIQDGYLSLLQDSGEVR	N[+28]DFQLIGIQDGYLSLLQDSGEVR	R	E	99.700000	118.000000	59.300000	113.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2617.330000	2.000000	0.000650	0.250000	87.000000	109.000000	0.533967	0.170800	0.323633	0.649400	6.486200	5.751950	NaN	NaN	NaN	0.671065	0.247800	0.562743	0.755446	8.807387	8.598475	NaN	NaN	NaN	0.713255	4.527593	0.037613	0.482093	0.044683	1.000000	0.152394	0.203638	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	I3L397_HUMAN	I3L397_HUMAN	Eukaryotic translation initiation factor 5A-1 (Fragment) OS=Homo sapiens GN=EIF5A PE=4 SV=1	100.000000	0.030700	16100.700000	5.000000	11.000000	13.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64703.64703.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64703"	NDFQLIGIQDGYLSLLQDSGEVR	N[+28]DFQLIGIQDGYLSLLQDSGEVR	R	E	99.700000	90.200000	59.100000	75.400000	Dimethyl (+28)	2607.320000	2.000000	-0.001900	-0.720000	87.000000	109.000000	0.533967	0.170800	0.323633	0.649400	6.486200	5.751950	NaN	NaN	NaN	0.671065	0.247800	0.562743	0.755446	8.807387	8.598475	NaN	NaN	NaN	0.713255	4.527593	0.037613	0.482093	0.070171	0.934560	0.152293	0.203459	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Flavin reductase (NADPH) OS=Homo sapiens GN=BLVRB PE=1 SV=3	BLVRB_HUMAN	BLVRB_HUMAN	Flavin reductase (NADPH) OS=Homo sapiens GN=BLVRB PE=1 SV=3	90.400000	0.002360	22100.700000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.37173.37173.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37173"	NDLSPTTVMSEGAR	N[+28]DLSPTTVMSEGAR	R	N	98.600000	51.200000	51.500000	29.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1514.730000	2.000000	-0.002100	-1.400000	79.000000	92.000000	10.225967	1.576133	0.328133	0.057900	0.054900	1.018000	NaN	NaN	NaN	12.851535	2.286681	0.570567	0.067355	0.074547	1.521788	NaN	NaN	NaN	6.459445	1.180614	0.495712	0.479253	1.000000	0.928536	0.152193	0.203281	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L31 OS=Homo sapiens GN=RPL31 PE=1 SV=1	sp|P62899|RL31_HUMAN	RL31_HUMAN	60S ribosomal protein L31 OS=Homo sapiens GN=RPL31 PE=1 SV=1	100.000000	0.002630	14445.200000	2.000000	2.000000	2.000000	Spectrum18400 scans:10375,	NEDEDSPNKLY	N[+28]EDEDSPNKLY	R	T	98.500000	47.300000	46.300000	39.000000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1382.650000	2.000000	-0.001600	-1.100000	93.000000	103.000000	0.592767	1.255100	2.356967	0.817200	7.334850	5.672750	NaN	NaN	NaN	0.744963	1.820921	4.098360	0.950647	9.959739	8.480081	NaN	NaN	NaN	0.847805	5.890330	0.076849	0.384879	0.542005	0.453030	0.151993	0.192939	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxycytidine kinase OS=Homo sapiens GN=DCK PE=4 SV=1	D6RFG8_HUMAN	D6RFG8_HUMAN	Deoxycytidine kinase OS=Homo sapiens GN=DCK PE=4 SV=1	100.000000	0.005270	36747.300000	2.000000	4.000000	4.000000	Spectrum61227 scans:34824,	NEEQGIPLEYLEKLH	N[+28]EEQGIPLEYLEKLH	R	Y	98.500000	33.700000	52.800000	27.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1874.990000	3.000000	0.000510	0.270000	195.000000	209.000000	2.887167	1.043700	0.414467	0.527000	11.093300	25.191300	NaN	NaN	NaN	3.628461	1.514218	0.720686	0.613058	15.063209	37.657971	NaN	NaN	NaN	2.120760	8.288713	0.393444	0.404329	0.689521	0.475761	0.151893	0.192778	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxycytidine kinase OS=Homo sapiens GN=DCK PE=4 SV=1	D6RFG8_HUMAN	D6RFG8_HUMAN	Deoxycytidine kinase OS=Homo sapiens GN=DCK PE=4 SV=1	100.000000	0.005270	36747.300000	2.000000	4.000000	4.000000	Spectrum61222 scans:34818,	NEEQGIPLEYLEKLH	N[+28]EEQGIPLEYLEKLH	R	Y	99.100000	36.900000	53.000000	27.000000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1871.000000	3.000000	0.000470	0.250000	195.000000	209.000000	2.887167	1.043700	0.414467	0.527000	11.093300	25.191300	NaN	NaN	NaN	3.628461	1.514218	0.720686	0.613058	15.063209	37.657971	NaN	NaN	NaN	2.120760	8.288713	0.393444	0.404329	0.689173	1.000000	0.151794	0.192617	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839-2|HNRPU_HUMAN	HNRPU_HUMAN	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	100.000000	0.002880	88962.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.23056.23056.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23056"	NFILDQTNVSAAAQR	N[+28]FILDQTNVSAAAQR	R	R	99.700000	109.000000	55.600000	92.800000	Dimethyl (+28)	1674.870000	2.000000	-0.000100	-0.061000	557.000000	571.000000	0.705133	1.035833	2.755700	0.396500	1.178300	3.709200	NaN	NaN	NaN	0.886180	1.502805	4.791688	0.461248	1.599973	5.544809	NaN	NaN	NaN	0.673714	1.551389	0.194483	0.019930	0.483421	0.181516	0.151694	0.180166	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.092200	90567.200000	4.000000	7.000000	7.000000	Nsco_Tails_biological_replicate_3_fraction2A.18197.18197.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18197"	NFILDQTNVSAAAQR	N[+28]FILDQTNVSAAAQR	R	R	99.700000	109.000000	56.100000	97.200000	Dimethyl (+28), Label:13C(6) (+6)	1680.890000	2.000000	-0.003700	-2.200000	576.000000	590.000000	0.705133	1.035833	2.755700	0.396500	1.178300	3.709200	NaN	NaN	NaN	0.886180	1.502805	4.791688	0.461248	1.599973	5.544809	NaN	NaN	NaN	0.673714	1.551389	0.194483	0.019930	0.483075	0.153343	0.151595	0.180026	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.025000	90567.200000	8.000000	16.000000	19.000000	Spectrum10366 scans:37219,	NFILDQTNVSAAAQR	N[+28]FILDQTNVSAAAQR	R	R	99.700000	94.600000	51.600000	68.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1684.870000	2.000000	-0.003500	-2.100000	576.000000	590.000000	0.705133	1.035833	2.755700	0.396500	1.178300	3.709200	NaN	NaN	NaN	0.886180	1.502805	4.791688	0.461248	1.599973	5.544809	NaN	NaN	NaN	0.673714	1.551389	0.194483	0.019930	0.242754	0.215444	0.151495	0.176187	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Protein prune homolog 2 OS=Homo sapiens GN=PRUNE2	sp|Q8WUY3-2|PRUN2_HUMAN	PRUN2_HUMAN	Isoform 2 of Protein prune homolog 2 OS=Homo sapiens GN=PRUNE2	68.900000	0.000000	340745.200000	0.000000	0.000000	0.000000	Spectrum30032 scans:15447,	NIDEDLLR	N[+28]IDEDLLR	Q	E	99.000000	51.900000	47.900000	0.000000	Dimethyl (+28)	1014.530000	2.000000	-0.000440	-0.430000	2360.000000	2367.000000	4.987233	1.343967	0.230133	3.328150	2.239700	0.791700	NaN	NaN	NaN	6.267731	1.949850	0.400162	3.871630	3.041211	1.183497	NaN	NaN	NaN	5.069680	2.495531	0.147734	0.137048	0.184335	0.147826	0.151396	0.176053	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4	sp|O75083|WDR1_HUMAN	WDR1_HUMAN	WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4	100.000000	0.011900	66175.200000	4.000000	6.000000	9.000000	Spectrum52875 scans:24863,	NIDNPALADIYTEHAH	N[+28]IDNPALADIYTEHAH	R	Q	99.700000	56.700000	48.900000	48.800000	Dimethyl (+28)	1820.870000	3.000000	0.000130	0.073000	44.000000	59.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	MARE1_HUMAN	MARE1_HUMAN	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	100.000000	0.030300	29981.500000	5.000000	15.000000	23.000000	Spectrum55106 scans:27362,	NIELICQENEGENDPVLQR	N[+28]IELIC[+57]QENEGENDPVLQR	R	I	99.700000	98.300000	50.300000	77.400000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2307.100000	2.000000	-0.004800	-2.100000	223.000000	241.000000	0.460500	0.348767	0.493700	NaN	2.024150	NaN	NaN	NaN	NaN	0.578736	0.505997	0.858459	NaN	2.748523	NaN	NaN	NaN	NaN	0.578736	1.627260	NaN	0.384098	NaN	1.000000	1.000000	0.173283	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	MARE1_HUMAN	MARE1_HUMAN	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	100.000000	0.030100	29981.500000	2.000000	7.000000	13.000000	Nsco_Tails_biological_replicate_3_fraction6A.27359.27359.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27359"	NIELICQENEGENDPVLQR	N[+28]IELIC[+57]QENEGENDPVLQR	R	I	99.700000	71.300000	54.400000	66.800000	Dimethyl (+28), Carbamidomethyl (+57)	2297.090000	2.000000	-0.004400	-1.900000	223.000000	241.000000	0.460500	0.348767	0.493700	NaN	2.024150	NaN	NaN	NaN	NaN	0.578736	0.505997	0.858459	NaN	2.748523	NaN	NaN	NaN	NaN	0.578736	1.627260	NaN	0.384098	NaN	1.000000	1.000000	0.167390	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	MARE1_HUMAN	MARE1_HUMAN	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	100.000000	0.030100	29981.500000	2.000000	7.000000	13.000000	Nsco_Tails_biological_replicate_3_fraction6A.27378.27378.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27378"	NIELICQENEGENDPVLQR	N[+28]IELIC[+57]QENEGENDPVLQR	R	I	99.700000	109.000000	56.200000	102.000000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	2303.130000	2.000000	0.009300	4.000000	223.000000	241.000000	0.460500	0.348767	0.493700	NaN	2.024150	NaN	NaN	NaN	NaN	0.578736	0.505997	0.858459	NaN	2.748523	NaN	NaN	NaN	NaN	0.578736	1.627260	NaN	0.384098	NaN	1.000000	1.000000	0.163950	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2	sp|O75643|U520_HUMAN	U520_HUMAN	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2	100.000000	0.005270	244495.800000	2.000000	4.000000	4.000000	Spectrum2689 scans:16598,	NIEMTQEDVR	N[+28]IEM[+16]TQEDVR	R	L	99.000000	56.500000	45.000000	38.500000	Dimethyl (+28), Oxidation (+16)	1277.590000	2.000000	-0.002800	-2.200000	638.000000	647.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2	sp|O75643|U520_HUMAN	U520_HUMAN	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2	100.000000	0.005270	244495.800000	2.000000	4.000000	4.000000	Spectrum2690 scans:16599,	NIEMTQEDVR	N[+28]IEM[+16]TQEDVR	R	L	99.600000	63.500000	45.500000	52.100000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1287.600000	2.000000	-0.002100	-1.600000	638.000000	647.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	RS3A_HUMAN	RS3A_HUMAN	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	100.000000	0.009220	29927.300000	6.000000	7.000000	7.000000	Spectrum17016 scans:7435,	NIGKTLVTR	N[+28]IGKTLVTR	R	T	99.700000	38.000000	46.800000	22.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1074.690000	3.000000	-0.000880	-0.820000	43.000000	51.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2	GLRX3_HUMAN	GLRX3_HUMAN	Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2	100.000000	0.017100	37414.800000	3.000000	7.000000	13.000000	Spectrum69455 scans:44368,	NIQFSSFDIFSDEEVR	N[+28]IQFSSFDIFSDEEVR	H	Q	99.000000	95.800000	47.900000	85.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1969.920000	2.000000	-0.012000	-6.200000	173.000000	188.000000	5.697000	0.463900	0.166500	NaN	NaN	0.562750	NaN	NaN	NaN	7.159734	0.673034	0.289515	NaN	NaN	0.841244	NaN	NaN	NaN	7.159734	0.673034	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2	GLRX3_HUMAN	GLRX3_HUMAN	Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2	100.000000	0.017100	37414.800000	3.000000	7.000000	13.000000	Spectrum69484 scans:44400,	NIQFSSFDIFSDEEVR	N[+28]IQFSSFDIFSDEEVR	H	Q	99.700000	91.600000	49.200000	83.200000	Dimethyl (+28), Label:13C(6) (+6)	1965.930000	2.000000	-0.007200	-3.600000	173.000000	188.000000	5.697000	0.463900	0.166500	NaN	NaN	0.562750	NaN	NaN	NaN	7.159734	0.673034	0.289515	NaN	NaN	0.841244	NaN	NaN	NaN	7.159734	0.673034	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 3 subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1	EIF3A_HUMAN	EIF3A_HUMAN	Eukaryotic translation initiation factor 3 subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1	100.000000	0.002500	166556.900000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40174.40174.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40174"	NIQTPESVLLSAVSGEDTQDR	N[+28]IQTPESVLLSAVSGEDTQDR	D	T	99.700000	75.300000	57.200000	74.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2296.150000	2.000000	0.003000	1.300000	120.000000	140.000000	0.007200	1.588300	113.626600	1.567250	0.605100	0.416450	NaN	NaN	NaN	0.009049	2.304333	197.577117	1.823179	0.821644	0.622543	NaN	NaN	NaN	0.916114	1.562989	0.496840	0.281951	0.590626	0.308245	0.150119	0.162225	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3	RS26_HUMAN	RS26_HUMAN	40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3	99.600000	0.003950	12997.500000	1.000000	3.000000	3.000000	Spectrum18385 scans:10337,	NIVEAAAVR	N[+28]IVEAAAVR	R	D	98.700000	53.000000	47.800000	27.900000	Dimethyl (+28)	969.560000	2.000000	0.000400	0.410000	43.000000	51.000000	0.699900	0.145333	0.255767	0.944900	9.912850	5.661650	NaN	NaN	NaN	0.879603	0.210852	0.444734	1.099200	13.460316	8.463488	NaN	NaN	NaN	0.989402	6.835584	0.070361	0.486579	0.082512	0.531788	0.150022	0.161885	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3	RS26_HUMAN	RS26_HUMAN	40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3	99.600000	0.003950	12997.500000	1.000000	3.000000	3.000000	Spectrum18377 scans:10319,	NIVEAAAVR	N[+28]IVEAAAVR	R	D	99.000000	52.900000	47.800000	24.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	979.570000	2.000000	0.000009	0.009300	43.000000	51.000000	0.699900	0.145333	0.255767	0.944900	9.912850	5.661650	NaN	NaN	NaN	0.879603	0.210852	0.444734	1.099200	13.460316	8.463488	NaN	NaN	NaN	0.989402	6.835584	0.070361	0.486579	0.082484	0.586056	0.149730	0.161096	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3	RS26_HUMAN	RS26_HUMAN	40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3	99.600000	0.003950	12997.500000	1.000000	3.000000	3.000000	Spectrum18382 scans:10332,	NIVEAAAVR	N[+28]IVEAAAVR	R	D	99.100000	53.400000	48.300000	28.100000	Dimethyl (+28), Label:13C(6) (+6)	975.580000	2.000000	-0.000250	-0.260000	43.000000	51.000000	0.699900	0.145333	0.255767	0.944900	9.912850	5.661650	NaN	NaN	NaN	0.879603	0.210852	0.444734	1.099200	13.460316	8.463488	NaN	NaN	NaN	0.989402	6.835584	0.070361	0.486579	0.074939	0.585853	0.149537	0.160984	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2	PSMD3_HUMAN	PSMD3_HUMAN	26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2	100.000000	0.003950	60961.600000	2.000000	3.000000	3.000000	Spectrum15025 scans:3963,	NKDLESAEER	N[+28]KDLESAEER	Y	R	99.700000	42.300000	48.800000	21.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1263.640000	3.000000	-0.000055	-0.043000	502.000000	511.000000	7.216767	1.586667	2.676467	NaN	0.077200	1.792100	NaN	NaN	NaN	9.069708	2.301963	4.653915	NaN	0.104827	2.678975	NaN	NaN	NaN	9.069708	1.203395	NaN	0.471030	NaN	0.706952	1.000000	0.159871	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2	PSMD3_HUMAN	PSMD3_HUMAN	26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2	100.000000	0.003950	60961.600000	2.000000	3.000000	3.000000	Spectrum15024 scans:3962,	NKDLESAEER	N[+28]KDLESAEER	Y	R	99.700000	47.700000	49.800000	15.100000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1255.670000	3.000000	0.000900	0.710000	502.000000	511.000000	7.216767	1.586667	2.676467	NaN	0.077200	1.792100	NaN	NaN	NaN	9.069708	2.301963	4.653915	NaN	0.104827	2.678975	NaN	NaN	NaN	9.069708	1.203395	NaN	0.471030	NaN	1.000000	1.000000	0.158665	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	EF1G_HUMAN	EF1G_HUMAN	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	100.000000	0.017100	50101.400000	6.000000	11.000000	13.000000	Spectrum13921 scans:2291,	NKQATENAKEEVR	N[+28]KQATENAKEEVR	H	R	99.700000	46.900000	52.100000	36.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1625.890000	4.000000	0.000120	0.075000	124.000000	136.000000	1.881700	0.428200	0.396967	11.330400	0.726550	2.023150	NaN	NaN	NaN	2.364836	0.621240	0.690257	13.180631	0.986557	3.024367	NaN	NaN	NaN	7.772734	0.803899	0.352166	0.142235	0.410210	0.302054	0.149151	0.157156	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of cAMP-dependent protein kinase catalytic subunit alpha OS=Homo sapiens GN=PRKACA	sp|P17612-2|KAPCA_HUMAN	KAPCA_HUMAN	Isoform 2 of cAMP-dependent protein kinase catalytic subunit alpha OS=Homo sapiens GN=PRKACA	99.800000	0.001320	39805.500000	1.000000	1.000000	1.000000	Spectrum50376 scans:21988,	NLLQVDLTKR	N[+28]LLQVDLTKR	R	F	99.700000	38.300000	47.000000	24.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1264.810000	3.000000	-0.000260	-0.210000	264.000000	273.000000	5.915933	1.052600	0.372667	2.194000	0.066450	NaN	NaN	NaN	NaN	7.434879	1.527130	0.648003	2.552276	0.090230	NaN	NaN	NaN	NaN	4.993577	0.808680	0.289483	0.462429	0.514340	1.000000	0.149055	0.157049	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	sp|P49368|TCPG_HUMAN	TCPG_HUMAN	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	100.000000	0.017300	60517.400000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.8108.8108.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8108"	NLQDAMQVCR	N[+28]LQDAMQVC[+57]R	R	N	99.700000	69.200000	48.200000	57.200000	Dimethyl (+28), Oxidation (+16), Carbamidomethyl (+57)	1277.590000	2.000000	-0.000300	-0.240000	390.000000	399.000000	0.622833	0.237867	0.382633	0.818850	0.483050	0.590550	NaN	NaN	NaN	0.782749	0.345101	0.665334	0.952567	0.655917	0.882801	NaN	NaN	NaN	0.867658	0.500509	0.062102	0.191662	0.110283	1.000000	0.148959	0.154428	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	sp|P49368|TCPG_HUMAN	TCPG_HUMAN	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	100.000000	0.017300	60517.400000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.15366.15366.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15366"	NLQDAMQVCR	N[+28]LQDAMQVC[+57]R	R	N	99.700000	88.900000	49.300000	72.700000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1271.600000	2.000000	-0.001500	-1.200000	390.000000	399.000000	0.622833	0.237867	0.382633	0.818850	0.483050	0.590550	NaN	NaN	NaN	0.782749	0.345101	0.665334	0.952567	0.655917	0.882801	NaN	NaN	NaN	0.867658	0.500509	0.062102	0.191662	0.340431	0.234840	0.148863	0.154325	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L31 OS=Homo sapiens GN=RPL31 PE=1 SV=1	sp|P62899|RL31_HUMAN	RL31_HUMAN	60S ribosomal protein L31 OS=Homo sapiens GN=RPL31 PE=1 SV=1	100.000000	0.002630	14445.200000	2.000000	2.000000	2.000000	Spectrum5945 scans:25016,	NLQTVNVDEN	N[+28]LQTVNVDEN	K	-	98.600000	46.600000	46.600000	36.500000	Dimethyl (+28)	1172.570000	2.000000	-0.000860	-0.730000	116.000000	125.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	TKT_HUMAN	TKT_HUMAN	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	100.000000	0.037400	67861.400000	4.000000	8.000000	13.000000	Nsco_Tails_biological_replicate1_apoptosis.33380.33380.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33380"	NLVAILDINR	N[+28]LVAILDINR	D	L	99.400000	58.900000	53.400000	39.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1177.710000	2.000000	-0.000490	-0.420000	177.000000	186.000000	1.588667	6.423833	0.798800	0.651250	18.062400	2.581550	NaN	NaN	NaN	1.996565	9.319808	1.388976	0.757598	24.526309	3.859108	NaN	NaN	NaN	1.377081	16.923059	0.269119	0.022404	1.000000	0.024594	0.148672	0.149151	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	TKT_HUMAN	TKT_HUMAN	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	100.000000	0.037400	67861.400000	4.000000	8.000000	13.000000	Nsco_Tails_biological_replicate1_apoptosis.33356.33356.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33356"	NLVAILDINR	N[+28]LVAILDINR	D	L	99.700000	62.400000	53.300000	39.500000	Dimethyl (+28)	1167.700000	2.000000	0.000003	0.002100	177.000000	186.000000	1.588667	6.423833	0.798800	0.651250	18.062400	2.581550	NaN	NaN	NaN	1.996565	9.319808	1.388976	0.757598	24.526309	3.859108	NaN	NaN	NaN	1.377081	16.923059	0.269119	0.022404	1.000000	0.059619	0.148576	0.149055	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC	sp|Q00610-2|CLH1_HUMAN	CLH1_HUMAN	Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC	100.000000	0.002880	187876.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.26968.26968.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26968"	NNLAGAEELFAR	N[+28]NLAGAEELFAR	R	K	99.700000	69.900000	53.200000	49.700000	Dimethyl (+28)	1331.680000	2.000000	-0.000810	-0.600000	355.000000	366.000000	0.553467	1.140400	2.107467	5.691750	1.215850	0.197150	NaN	NaN	NaN	0.695572	1.654512	3.664522	6.621201	1.650961	0.294716	NaN	NaN	NaN	3.658387	1.652736	0.433366	0.000684	1.000000	0.001819	0.148481	0.144855	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2	sp|Q08J23|NSUN2_HUMAN	NSUN2_HUMAN	tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2 PE=1 SV=2	100.000000	0.009330	86454.800000	2.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.35693.35693.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35693"	NNSGEEFDCAFR	N[+28]NSGEEFDC[+57]AFR	R	L	99.200000	43.200000	41.100000	43.200000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1482.610000	2.000000	-0.001900	-1.300000	591.000000	602.000000	1.136300	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.428051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.428051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2	sp|Q08J23|NSUN2_HUMAN	NSUN2_HUMAN	tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2 PE=1 SV=2	100.000000	0.009330	86454.800000	2.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.35674.35674.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35674"	NNSGEEFDCAFR	N[+28]NSGEEFDC[+57]AFR	R	L	99.600000	59.000000	41.600000	58.000000	Dimethyl (+28), Carbamidomethyl (+57)	1472.610000	2.000000	0.006400	4.400000	591.000000	602.000000	1.136300	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.428051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.428051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	sp|Q01081|U2AF1_HUMAN	U2AF1_HUMAN	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	99.900000	0.002360	27854.200000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.12384.12384.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12384"	NPQNSSQSADGLR	N[+28]PQNSSQSADGLR	R	C	99.300000	59.800000	50.300000	49.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1410.670000	2.000000	-0.007300	-5.200000	54.000000	66.000000	0.482533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.606426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.606426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	sp|Q01081|U2AF1_HUMAN	U2AF1_HUMAN	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	100.000000	0.002330	27854.200000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.11645.11645.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11645"	NPQNSSQSADGLR	N[+28]PQNSSQSADGLR	R	C	99.600000	62.600000	50.600000	54.500000	Dimethyl (+28)	1400.670000	2.000000	0.000980	0.700000	54.000000	66.000000	0.482533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.606426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.606426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum48652 scans:20004,	NPSTVEAFDLAQSNSEHSR	N[+28]PSTVEAFDLAQSNSEHSR	R	H	99.700000	70.800000	48.600000	65.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2125.990000	3.000000	0.003100	1.400000	213.000000	231.000000	NaN	480.011267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	696.408647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	696.408647	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum48661 scans:20014,	NPSTVEAFDLAQSNSEHSR	N[+28]PSTVEAFDLAQSNSEHSR	R	H	99.700000	82.200000	48.800000	75.000000	Dimethyl (+28), Label:13C(6) (+6)	2121.990000	3.000000	-0.007800	-3.700000	213.000000	231.000000	NaN	480.011267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	696.408647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	696.408647	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform Long of Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1	sp|P25786-2|PSA1_HUMAN	PSA1_HUMAN	Isoform Long of Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1	100.000000	0.002360	30221.900000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.42252.42252.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42252"	NQYDNDVTVWSPQGR	N[+28]QYDNDVTVWSPQGR	R	I	99.700000	73.700000	50.100000	71.900000	Dimethyl (+28)	1805.830000	2.000000	-0.007900	-4.400000	10.000000	24.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform Long of Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1	sp|P25786|PSA1_HUMAN	PSA1_HUMAN	Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1	99.900000	0.004670	29538.000000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.40892.40892.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40892"	NQYDNDVTVWSPQGR	N[+28]QYDNDVTVWSPQGR	R	I	99.700000	66.300000	51.300000	65.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1815.850000	2.000000	0.003800	2.100000	4.000000	18.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1	IF6_HUMAN	IF6_HUMAN	Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1	100.000000	0.002630	26580.200000	1.000000	2.000000	2.000000	Spectrum46275 scans:17261,	NSLPDTVQIR	N[+28]SLPDTVQIR	R	R	99.700000	66.100000	49.500000	47.400000	Dimethyl (+28)	1169.640000	2.000000	0.000160	0.140000	86.000000	95.000000	0.410067	0.185867	0.380300	1.328300	2.050300	1.101500	NaN	NaN	NaN	0.515353	0.269659	0.661276	1.545209	2.784032	1.646610	NaN	NaN	NaN	1.030281	1.526845	0.295062	0.438529	0.519992	1.000000	0.147440	0.138523	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	sp|P11413-2|G6PD_HUMAN	G6PD_HUMAN	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	100.000000	0.022400	63810.100000	5.000000	10.000000	17.000000	Spectrum45720 scans:16618,	NSYVAGQYDDAASYQR	N[+28]SYVAGQYDDAASYQR	R	L	99.700000	110.000000	45.000000	106.000000	Dimethyl (+28), Label:13C(6) (+6)	1840.830000	2.000000	-0.006500	-3.500000	105.000000	120.000000	NaN	NaN	NaN	NaN	9.943700	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.502207	NaN	NaN	NaN	NaN	NaN	13.502207	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	sp|P11413-2|G6PD_HUMAN	G6PD_HUMAN	Isoform Long of Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD	100.000000	0.025400	63810.100000	4.000000	8.000000	11.000000	Nsco_Tails_biological_replicate_3_fraction6A.16614.16614.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16614"	NSYVAGQYDDAASYQR	N[+28]SYVAGQYDDAASYQR	R	L	99.700000	96.600000	47.900000	95.900000	Dimethyl (+28)	1834.810000	2.000000	-0.000310	-0.170000	105.000000	120.000000	NaN	NaN	NaN	NaN	9.943700	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	13.502207	NaN	NaN	NaN	NaN	NaN	13.502207	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	SODC_HUMAN	SODC_HUMAN	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	100.000000	0.049000	15917.300000	7.000000	17.000000	17.000000	Nsco_Tails_biological_replicate1_apoptosis.15087.15087.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15087"	NTAGCTSAGPHFNPLSR	N[+28]TAGC[+57]TSAGPHFNPLSR	D	K	98.800000	65.100000	51.900000	60.400000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1823.860000	3.000000	-0.003100	-1.700000	54.000000	70.000000	0.555167	0.308300	0.555367	0.506400	3.111850	6.115250	NaN	3.222700	NaN	0.697709	0.447287	0.965687	0.589094	4.225474	9.141565	NaN	1.372517	NaN	0.643401	2.015093	0.053608	0.218355	0.151976	1.000000	0.147159	0.009377	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	SODC_HUMAN	SODC_HUMAN	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	100.000000	0.049000	15917.300000	7.000000	17.000000	17.000000	Nsco_Tails_biological_replicate1_apoptosis.15057.15057.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15057"	NTAGCTSAGPHFNPLSR	N[+28]TAGC[+57]TSAGPHFNPLSR	D	K	99.300000	71.600000	51.700000	68.200000	Dimethyl (+28), Carbamidomethyl (+57)	1813.850000	3.000000	-0.002000	-1.100000	54.000000	70.000000	0.555167	0.308300	0.555367	0.506400	3.111850	6.115250	NaN	3.222700	NaN	0.697709	0.447287	0.965687	0.589094	4.225474	9.141565	NaN	1.372517	NaN	0.643401	2.015093	0.053608	0.218355	0.151852	1.000000	0.147065	0.009339	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=2 SV=1	sp|P61978|HNRPK_HUMAN	HNRPK_HUMAN	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=1 SV=1	100.000000	0.007080	50960.500000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.20807.20807.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20807"	NTDEMVELR	N[+28]TDEMVELR	R	I	99.600000	59.800000	48.200000	48.400000	Dimethyl (+28), Oxidation (+16)	1149.530000	2.000000	-0.000770	-0.670000	38.000000	46.000000	0.463667	0.409833	0.935067	1.129250	0.963200	0.928650	1.072229	0.683300	0.889129	0.582715	0.594593	1.625920	1.313654	1.307896	1.388220	0.717138	0.291011	0.426073	0.871169	0.731167	0.060509	0.136073	0.093277	0.344150	0.010021	0.009333	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=2 SV=1	sp|P61978|HNRPK_HUMAN	HNRPK_HUMAN	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=1 SV=1	100.000000	0.007080	50960.500000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.20761.20761.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20761"	NTDEMVELR	N[+28]TDEMVELR	R	I	99.700000	74.500000	48.900000	60.700000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1159.550000	2.000000	0.003500	3.000000	38.000000	46.000000	0.463667	0.409833	0.935067	1.129250	0.963200	0.928650	1.072229	0.683300	0.889129	0.582715	0.594593	1.625920	1.313654	1.307896	1.388220	0.717138	0.291011	0.426073	0.871169	0.731167	0.060509	0.136073	0.093235	0.328812	0.010014	0.009327	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=2 SV=1	sp|P61978|HNRPK_HUMAN	HNRPK_HUMAN	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=1 SV=1	100.000000	0.039500	50960.500000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.12646.12646.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12646"	NTDEMVELR	N[+28]TDEMVELR	R	I	99.100000	62.700000	49.300000	44.700000	Dimethyl (+28)	1133.540000	2.000000	0.001400	1.300000	38.000000	46.000000	0.463667	0.409833	0.935067	1.129250	0.963200	0.928650	1.072229	0.683300	0.889129	0.582715	0.594593	1.625920	1.313654	1.307896	1.388220	0.717138	0.291011	0.426073	0.871169	0.731167	0.060509	0.136073	0.093152	0.328583	0.009995	0.008871	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=2 SV=1	sp|P61978|HNRPK_HUMAN	HNRPK_HUMAN	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=1 SV=1	100.000000	0.017100	50960.500000	4.000000	8.000000	13.000000	Spectrum17115 scans:7635,	NTDEMVELR	N[+28]TDEMVELR	R	I	99.400000	63.500000	46.400000	52.200000	Dimethyl (+28), Oxidation (+16), Label:13C(6) (+6)	1155.550000	2.000000	0.000850	0.740000	38.000000	46.000000	0.463667	0.409833	0.935067	1.129250	0.963200	0.928650	1.072229	0.683300	0.889129	0.582715	0.594593	1.625920	1.313654	1.307896	1.388220	0.717138	0.291011	0.426073	0.871169	0.731167	0.060509	0.136073	0.181788	0.266916	0.009989	0.008866	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=2 SV=1	sp|P61978|HNRPK_HUMAN	HNRPK_HUMAN	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=1 SV=1	100.000000	0.017100	50960.500000	4.000000	8.000000	13.000000	Spectrum6900 scans:27295,	NTDEMVELR	N[+28]TDEMVELR	R	I	99.700000	76.300000	46.000000	57.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1143.540000	2.000000	-0.002300	-2.000000	38.000000	46.000000	0.463667	0.409833	0.935067	1.129250	0.963200	0.928650	1.072229	0.683300	0.889129	0.582715	0.594593	1.625920	1.313654	1.307896	1.388220	0.717138	0.291011	0.426073	0.871169	0.731167	0.060509	0.136073	0.181631	0.265564	0.009983	0.008787	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=2 SV=1	sp|P61978|HNRPK_HUMAN	HNRPK_HUMAN	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=1 SV=1	100.000000	0.017100	50960.500000	4.000000	8.000000	13.000000	Spectrum19417 scans:12651,	NTDEMVELR	N[+28]TDEMVELR	R	I	99.700000	83.000000	46.900000	62.500000	Dimethyl (+28), Label:13C(6) (+6)	1139.560000	2.000000	-0.000950	-0.830000	38.000000	46.000000	0.463667	0.409833	0.935067	1.129250	0.963200	0.928650	1.072229	0.683300	0.889129	0.582715	0.594593	1.625920	1.313654	1.307896	1.388220	0.717138	0.291011	0.426073	0.871169	0.731167	0.060509	0.136073	0.181474	0.265415	0.009976	0.008782	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2	sp|P30566|PUR8_HUMAN	PUR8_HUMAN	Adenylosuccinate lyase OS=Homo sapiens GN=ADSL PE=1 SV=2	100.000000	0.008640	54872.500000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.23228.23228.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23228"	NTDLIILR	NaN	D	N	98.600000	49.600000	52.300000	14.400000	Dimethyl (+28)	984.600000	2.000000	-0.001800	-1.900000	118.000000	125.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Glia maturation factor beta (Fragment) OS=Homo sapiens GN=GMFB PE=4 SV=1	G3V4P8_HUMAN	G3V4P8_HUMAN	Glia maturation factor beta (Fragment) OS=Homo sapiens GN=GMFB PE=4 SV=1	100.000000	0.009440	17494.400000	2.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.54356.54356.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=54356"	NTEDLTEEWLR	N[+28]TEDLTEEWLR	R	E	99.300000	57.300000	50.800000	48.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1442.690000	2.000000	-0.005500	-3.800000	138.000000	148.000000	1.604200	2.242333	1.127167	0.505300	1.631000	3.146850	NaN	NaN	NaN	2.016086	3.253216	1.959949	0.587814	2.214679	4.704163	NaN	NaN	NaN	1.301950	2.733947	0.319392	0.119492	1.000000	0.224250	0.146136	0.125045	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.054000	37523.700000	7.000000	15.000000	41.000000	Spectrum59829 scans:33043,	NTGEIKALAGCDFLTISPK	N[+28]TGEIKALAGC[+57]DFLTISPK	R	L	99.000000	45.500000	54.300000	27.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36)	2134.160000	3.000000	-0.005900	-2.800000	240.000000	258.000000	5.533367	3.097100	0.483433	1.208100	NaN	NaN	NaN	NaN	NaN	6.954087	4.493326	0.840607	1.405380	NaN	NaN	NaN	NaN	NaN	4.179733	4.493326	0.373053	NaN	1.000000	NaN	0.146044	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1	RS25_HUMAN	RS25_HUMAN	40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1	100.000000	0.002630	13725.000000	1.000000	2.000000	2.000000	Spectrum14425 scans:3032,	NTKGGDAPAAGEDA	N[+28]TKGGDAPAAGEDA	R	-	98.800000	50.100000	47.500000	37.600000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1332.640000	2.000000	-0.001800	-1.300000	112.000000	125.000000	144.201267	61.704400	0.320100	NaN	NaN	NaN	NaN	NaN	NaN	181.225671	89.521811	0.556599	NaN	NaN	NaN	NaN	NaN	NaN	181.225671	89.521811	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1	RS25_HUMAN	RS25_HUMAN	40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1	96.800000	0.004670	13725.000000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.8548.8548.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8548"	NTKGGDAPAAGEDA	N[+28]TKGGDAPAAGEDA	R	-	99.300000	52.900000	49.200000	38.900000	Dimethyl (+28), Dimethyl (+28)	1328.620000	2.000000	-0.001800	-1.300000	112.000000	125.000000	144.201267	61.704400	0.320100	NaN	NaN	NaN	NaN	NaN	NaN	181.225671	89.521811	0.556599	NaN	NaN	NaN	NaN	NaN	NaN	181.225671	89.521811	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1	RS25_HUMAN	RS25_HUMAN	40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1	96.800000	0.004670	13725.000000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.8564.8564.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8564"	NTKGGDAPAAGEDA	N[+28]TKGGDAPAAGEDA	R	-	99.600000	57.200000	50.000000	47.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1336.630000	2.000000	-0.002400	-1.800000	112.000000	125.000000	144.201267	61.704400	0.320100	NaN	NaN	NaN	NaN	NaN	NaN	181.225671	89.521811	0.556599	NaN	NaN	NaN	NaN	NaN	NaN	181.225671	89.521811	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	sp|O00410|IPO5_HUMAN	IPO5_HUMAN	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	100.000000	0.002630	123614.200000	1.000000	2.000000	2.000000	Spectrum33427 scans:2500,	NTTAAEEAR	N[+28]TTAAEEAR	R	Q	99.700000	95.900000	45.900000	59.500000	Dimethyl (+28)	989.480000	2.000000	0.000420	0.420000	51.000000	59.000000	0.527300	25.666567	41.117433	NaN	NaN	NaN	NaN	NaN	NaN	0.662687	37.237499	71.496146	NaN	NaN	NaN	NaN	NaN	NaN	0.662687	37.237499	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	sp|O00410|IPO5_HUMAN	IPO5_HUMAN	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	100.000000	0.002630	123614.200000	1.000000	2.000000	2.000000	Spectrum33428 scans:2501,	NTTAAEEAR	N[+28]TTAAEEAR	R	Q	99.700000	92.400000	45.500000	57.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	999.490000	2.000000	-0.000350	-0.350000	51.000000	59.000000	0.527300	25.666567	41.117433	NaN	NaN	NaN	NaN	NaN	NaN	0.662687	37.237499	71.496146	NaN	NaN	NaN	NaN	NaN	NaN	0.662687	37.237499	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4	SERA_HUMAN	SERA_HUMAN	D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4	100.000000	0.008640	56632.600000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.11450.11450.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11450"	NVDLEAATR	N[+28]VDLEAATR	D	K	99.400000	59.600000	51.700000	36.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1025.540000	2.000000	0.002100	2.100000	82.000000	90.000000	0.679300	0.363600	0.583733	0.497650	0.412650	0.821800	NaN	NaN	NaN	0.853714	0.527517	1.015012	0.578915	0.560323	1.228492	NaN	NaN	NaN	0.716314	0.543920	0.120647	0.019193	0.122054	0.039784	0.145037	0.116599	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4	SERA_HUMAN	SERA_HUMAN	D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4	100.000000	0.007080	56632.600000	2.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.25296.25296.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25296"	NVDLEAATR	N[+28]VDLEAATR	D	K	98.600000	53.200000	51.500000	37.600000	Dimethyl (+28)	1015.530000	2.000000	-0.000280	-0.270000	82.000000	90.000000	0.679300	0.363600	0.583733	0.497650	0.412650	0.821800	NaN	NaN	NaN	0.853714	0.527517	1.015012	0.578915	0.560323	1.228492	NaN	NaN	NaN	0.716314	0.543920	0.120647	0.019193	0.122019	0.027983	0.144946	0.116541	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2	SYMC_HUMAN	SYMC_HUMAN	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2	100.000000	0.005270	101099.500000	3.000000	4.000000	4.000000	Spectrum12840 scans:47971,	NVLITSALPY	N[+28]VLITSALPY	R	V	98.700000	49.800000	49.400000	30.900000	Dimethyl (+28)	1117.640000	2.000000	-0.000460	-0.410000	265.000000	274.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Trifunctional enzyme subunit beta, mitochondrial OS=Homo sapiens GN=HADHB PE=1 SV=3	ECHB_HUMAN	ECHB_HUMAN	Trifunctional enzyme subunit beta, mitochondrial OS=Homo sapiens GN=HADHB PE=1 SV=3	100.000000	0.011900	51278.000000	2.000000	3.000000	9.000000	Spectrum18731 scans:11132,	NVVVVDGVR	N[+28]VVVVDGVR	R	T	99.700000	73.300000	48.000000	50.800000	Dimethyl (+28), Label:13C(6) (+6)	989.600000	2.000000	0.000470	0.470000	53.000000	61.000000	9.625133	4.035067	11.844367	1.881700	0.257450	0.300650	NaN	NaN	NaN	12.096435	5.854145	20.595317	2.188978	0.349582	0.449436	NaN	NaN	NaN	7.142706	3.101863	0.362809	0.462029	1.000000	1.000000	0.144133	0.106753	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A	sp|P78559|MAP1A_HUMAN	MAP1A_HUMAN	Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A PE=1 SV=6	100.000000	0.015800	305468.400000	8.000000	11.000000	12.000000	Spectrum767 scans:10947,	PEGLSSESGR	PEGLSSESGR	D	V	99.200000	56.500000	45.700000	42.700000	Label:13C(6) (+6)	1023.490000	2.000000	0.000370	0.360000	2582.000000	2591.000000	0.770367	1.707167	2.380400	NaN	NaN	NaN	NaN	NaN	NaN	0.968162	2.476787	4.139106	NaN	NaN	NaN	NaN	NaN	NaN	0.968162	2.476787	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	D-dopachrome decarboxylase OS=Homo sapiens GN=DDT PE=2 SV=1	DDTL_HUMAN	DDTL_HUMAN	D-dopachrome decarboxylase-like protein OS=Homo sapiens GN=DDTL PE=2 SV=1	100.000000	0.037400	14177.700000	1.000000	3.000000	13.000000	Nsco_Tails_biological_replicate1_apoptosis.42610.42610.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42610"	PFLELDTNLPANR	P[+42]FLELDTNLPANR	M	V	99.700000	63.800000	55.000000	46.900000	Acetyl (+42), Label:13C(6) (+6)	1546.810000	2.000000	-0.003400	-2.200000	2.000000	14.000000	0.601000	0.371633	0.618867	16.654950	2.071050	0.865250	NaN	NaN	NaN	0.755310	0.539172	1.076103	19.374669	2.812207	1.293445	NaN	NaN	NaN	10.064989	1.675690	0.452007	0.379407	1.000000	1.000000	0.143954	0.106458	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	D-dopachrome decarboxylase OS=Homo sapiens GN=DDT PE=2 SV=1	DDTL_HUMAN	DDTL_HUMAN	D-dopachrome decarboxylase-like protein OS=Homo sapiens GN=DDTL PE=2 SV=1	100.000000	0.037400	14177.700000	1.000000	3.000000	13.000000	Nsco_Tails_biological_replicate1_apoptosis.43305.43305.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43305"	PFLELDTNLPANR	P[+42]FLELDTNLPANR	M	V	99.700000	92.000000	54.600000	78.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1550.800000	2.000000	-0.000460	-0.300000	2.000000	14.000000	0.601000	0.371633	0.618867	16.654950	2.071050	0.865250	NaN	NaN	NaN	0.755310	0.539172	1.076103	19.374669	2.812207	1.293445	NaN	NaN	NaN	10.064989	1.675690	0.452007	0.379407	1.000000	0.396549	0.143864	0.106409	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	D-dopachrome decarboxylase OS=Homo sapiens GN=DDT PE=2 SV=1	DDTL_HUMAN	DDTL_HUMAN	D-dopachrome decarboxylase-like protein OS=Homo sapiens GN=DDTL PE=2 SV=1	100.000000	0.037400	14177.700000	1.000000	3.000000	13.000000	Nsco_Tails_biological_replicate1_apoptosis.42909.42909.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42909"	PFLELDTNLPANR	P[+42]FLELDTNLPANR	M	V	99.700000	98.600000	54.400000	78.000000	Acetyl (+42)	1540.790000	2.000000	-0.000700	-0.460000	2.000000	14.000000	0.601000	0.371633	0.618867	16.654950	2.071050	0.865250	NaN	NaN	NaN	0.755310	0.539172	1.076103	19.374669	2.812207	1.293445	NaN	NaN	NaN	10.064989	1.675690	0.452007	0.379407	1.000000	1.000000	0.143775	0.106214	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4	MIF_HUMAN	MIF_HUMAN	Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4	100.000000	0.161000	12458.500000	2.000000	7.000000	56.000000	Nsco_Tails_biological_replicate1_apoptosis.41056.41056.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41056"	PMFIVNTNVPR	PMFIVNTNVPR	M	A	99.600000	62.500000	53.700000	44.700000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1338.700000	2.000000	0.000500	0.370000	2.000000	12.000000	0.605533	1.388367	1.997800	1.075450	1.990800	9.926600	0.765314	NaN	2.104043	0.761007	2.014266	3.473831	1.251069	2.703239	14.839076	0.511865	NaN	1.008263	0.841313	2.358752	0.060617	0.092323	1.000000	0.410719	0.009797	0.097199	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4	MIF_HUMAN	MIF_HUMAN	Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4	100.000000	0.161000	12458.500000	2.000000	7.000000	56.000000	Nsco_Tails_biological_replicate1_apoptosis.40813.40813.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40813"	PMFIVNTNVPR	PMFIVNTNVPR	M	A	99.600000	62.600000	54.100000	44.600000	Acetyl (+42), Label:13C(6) (+6)	1334.710000	2.000000	-0.000280	-0.210000	2.000000	12.000000	0.605533	1.388367	1.997800	1.075450	1.990800	9.926600	0.765314	NaN	2.104043	0.761007	2.014266	3.473831	1.251069	2.703239	14.839076	0.511865	NaN	1.008263	0.841313	2.358752	0.060617	0.092323	1.000000	0.410193	0.009791	0.097158	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4	MIF_HUMAN	MIF_HUMAN	Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4	100.000000	0.161000	12458.500000	2.000000	7.000000	56.000000	Nsco_Tails_biological_replicate1_apoptosis.36270.36270.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36270"	PMFIVNTNVPR	PMFIVNTNVPR	M	A	99.700000	62.500000	53.800000	49.400000	Acetyl (+42), Oxidation (+16), Label:13C(6) (+6)	1350.710000	2.000000	-0.000890	-0.660000	2.000000	12.000000	0.605533	1.388367	1.997800	1.075450	1.990800	9.926600	0.765314	NaN	2.104043	0.761007	2.014266	3.473831	1.251069	2.703239	14.839076	0.511865	NaN	1.008263	0.841313	2.358752	0.060617	0.092323	1.000000	0.205097	0.009779	0.097117	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4	MIF_HUMAN	MIF_HUMAN	Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4	100.000000	0.161000	12458.500000	2.000000	7.000000	56.000000	Nsco_Tails_biological_replicate1_apoptosis.41154.41154.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41154"	PMFIVNTNVPR	PMFIVNTNVPR	M	A	99.700000	65.000000	53.600000	46.200000	Acetyl (+42)	1328.690000	2.000000	-0.000051	-0.038000	2.000000	12.000000	0.605533	1.388367	1.997800	1.075450	1.990800	9.926600	0.765314	NaN	2.104043	0.761007	2.014266	3.473831	1.251069	2.703239	14.839076	0.511865	NaN	1.008263	0.841313	2.358752	0.060617	0.092323	1.000000	0.204965	0.009772	0.097077	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4	MIF_HUMAN	MIF_HUMAN	Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4	100.000000	0.032700	12458.500000	1.000000	6.000000	14.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.58074.58074.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=58074"	PMFIVNTNVPR	PMFIVNTNVPR	M	A	99.100000	62.400000	53.000000	49.800000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10)	1354.690000	3.000000	-0.006100	-4.500000	2.000000	12.000000	0.605533	1.388367	1.997800	1.075450	1.990800	9.926600	0.765314	NaN	2.104043	0.761007	2.014266	3.473831	1.251069	2.703239	14.839076	0.511865	NaN	1.008263	0.841313	2.358752	0.060617	0.092323	0.072782	0.112447	0.009760	0.097036	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4	MIF_HUMAN	MIF_HUMAN	Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4	100.000000	0.032700	12458.500000	1.000000	6.000000	14.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.58588.58588.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=58588"	PMFIVNTNVPR	PMFIVNTNVPR	M	A	99.600000	65.500000	53.100000	51.200000	Acetyl (+42), Oxidation (+16)	1344.690000	3.000000	-0.000420	-0.310000	2.000000	12.000000	0.605533	1.388367	1.997800	1.075450	1.990800	9.926600	0.765314	NaN	2.104043	0.761007	2.014266	3.473831	1.251069	2.703239	14.839076	0.511865	NaN	1.008263	0.841313	2.358752	0.060617	0.092323	0.156737	0.225289	0.009754	0.096995	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum34874 scans:4121,	PSQVVAETR	PSQVVAETR	R	K	99.700000	95.500000	48.600000	54.900000	Label:13C(6) (+6)	991.540000	2.000000	0.001800	1.800000	831.000000	839.000000	0.410233	2.227233	15.422867	0.767650	0.393100	0.511800	NaN	NaN	NaN	0.515563	3.231309	26.817713	0.893006	0.533777	0.765080	NaN	NaN	NaN	0.704284	1.882543	0.166674	0.395779	0.430648	0.965110	0.142975	0.096954	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.044800	95322.100000	6.000000	8.000000	10.000000	Nsco_Tails_biological_replicate2_apoptosis.3968.3968.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3968"	PSQVVAETR	PSQVVAETR	R	K	99.700000	73.300000	51.400000	47.300000		985.520000	2.000000	0.000420	0.420000	831.000000	839.000000	0.410233	2.227233	15.422867	0.767650	0.393100	0.511800	NaN	NaN	NaN	0.515563	3.231309	26.817713	0.893006	0.533777	0.765080	NaN	NaN	NaN	0.704284	1.882543	0.166674	0.395779	0.168716	0.969881	0.142887	0.096914	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4	sp|Q5T4S7|UBR4_HUMAN	UBR4_HUMAN	E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1	99.000000	0.005010	573824.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46426.46426.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46426"	QAACTIVEALATIPSR	NaN	R	K	99.700000	92.600000	55.500000	89.600000	Gln->pyro-Glu (-17), Carbamidomethyl (+57)	1682.870000	2.000000	-0.000540	-0.320000	4143.000000	4158.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4	sp|Q5T4S7-2|UBR4_HUMAN	UBR4_HUMAN	Isoform 2 of E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4	99.000000	0.005010	575941.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46466.46466.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46466"	QAACTIVEALATIPSR	NaN	R	K	99.600000	71.500000	56.000000	65.700000	Gln->pyro-Glu (-17), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1692.890000	2.000000	0.011000	6.400000	4143.000000	4158.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	TERA_HUMAN	TERA_HUMAN	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	100.000000	0.020200	89306.800000	3.000000	5.000000	7.000000	Nsco_Tails_biological_replicate1_apoptosis.51257.51257.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=51257"	QAAPCVLFFDELDSIAKAR	NaN	R	G	99.700000	66.800000	57.000000	60.000000	Gln->pyro-Glu (-17), Carbamidomethyl (+57), Dimethyl (+28)	2161.090000	2.000000	-0.001000	-0.460000	568.000000	586.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	TERA_HUMAN	TERA_HUMAN	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	100.000000	0.020200	89306.800000	3.000000	5.000000	7.000000	Nsco_Tails_biological_replicate1_apoptosis.51206.51206.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=51206"	QAAPCVLFFDELDSIAKAR	NaN	R	G	99.700000	68.500000	58.400000	68.500000	Gln->pyro-Glu (-17), Carbamidomethyl (+57), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2171.130000	2.000000	-0.002300	-1.100000	568.000000	586.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	TERA_HUMAN	TERA_HUMAN	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	100.000000	0.007510	89306.800000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.51988.51988.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=51988"	QAAPCVLFFDELDSIAKAR	NaN	R	G	99.700000	81.900000	57.500000	72.600000	Gln->pyro-Glu (-17), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2179.110000	2.000000	-0.005000	-2.300000	568.000000	586.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 OS=Homo sapiens GN=NUCKS1 PE=1 SV=1	sp|Q9H1E3|NUCKS_HUMAN	NUCKS_HUMAN	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 OS=Homo sapiens GN=NUCKS1 PE=1 SV=1	100.000000	0.007900	27278.700000	3.000000	5.000000	6.000000	Spectrum23593 scans:1819,	QAASKAASKQR	NaN	R	E	98.900000	31.200000	48.700000	16.000000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1197.740000	3.000000	-0.000250	-0.210000	94.000000	104.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 OS=Homo sapiens GN=NUCKS1 PE=1 SV=1	sp|Q9H1E3|NUCKS_HUMAN	NUCKS_HUMAN	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 OS=Homo sapiens GN=NUCKS1 PE=1 SV=1	100.000000	0.007900	27278.700000	3.000000	5.000000	6.000000	Spectrum23592 scans:1818,	QAASKAASKQR	NaN	R	E	99.400000	36.300000	49.600000	14.700000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1209.700000	3.000000	-0.000440	-0.370000	94.000000	104.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum36080 scans:5494,	QAASSLQQAS	Q[+28]AASSLQQAS	R	L	99.300000	56.400000	47.000000	35.300000	Dimethyl (+28)	1017.510000	2.000000	0.000058	0.057000	635.000000	644.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum72781 scans:49436,	QAASSLQQASLKLFEMAY	NaN	R	K	98.900000	54.900000	52.200000	48.800000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Oxidation (+16)	2016.020000	2.000000	-0.001400	-0.710000	635.000000	652.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	GUAA_HUMAN	GUAA_HUMAN	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	100.000000	0.005760	76698.700000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.22296.22296.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22296"	QADFEAHNILR	NaN	R	E	99.700000	69.300000	50.700000	60.800000	Gln->pyro-Glu (-17)	1295.630000	2.000000	-0.000490	-0.380000	590.000000	600.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	GUAA_HUMAN	GUAA_HUMAN	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	100.000000	0.013200	76698.700000	5.000000	10.000000	10.000000	Spectrum52102 scans:24007,	QADFEAHNILR	NaN	R	E	99.000000	51.000000	47.500000	33.000000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1305.630000	2.000000	-0.000300	-0.230000	590.000000	600.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	GUAA_HUMAN	GUAA_HUMAN	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	100.000000	0.013200	76698.700000	5.000000	10.000000	10.000000	Spectrum52105 scans:24011,	QADFEAHNILR	NaN	R	E	99.700000	74.400000	48.200000	55.800000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1301.650000	2.000000	-0.000200	-0.160000	590.000000	600.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 3 of Ubiquitin carboxyl-terminal hydrolase 10 OS=Homo sapiens GN=USP10	sp|Q14694-3|UBP10_HUMAN	UBP10_HUMAN	Isoform 3 of Ubiquitin carboxyl-terminal hydrolase 10 OS=Homo sapiens GN=USP10	98.900000	0.002500	87516.100000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.44688.44688.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44688"	QADFVQTPITGIFGGH	NaN	R	I	99.700000	60.700000	52.700000	54.900000	Gln->pyro-Glu (-17)	1669.810000	2.000000	-0.003000	-1.800000	598.000000	613.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	PGP_HUMAN	PGP_HUMAN	Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1	100.000000	0.018400	33988.600000	5.000000	9.000000	14.000000	Spectrum37109 scans:6661,	QADIIGKPSR	Q[+28]ADIIGKPSR	R	F	99.700000	42.400000	49.100000	28.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1157.690000	3.000000	-0.000710	-0.620000	229.000000	238.000000	6.180767	0.599800	1.272300	1.948750	48.905150	4.948850	NaN	NaN	NaN	7.767710	0.870200	2.212311	2.266977	66.406613	7.397937	NaN	NaN	NaN	5.017343	33.638407	0.319226	0.444741	0.337409	0.697672	0.141229	0.082237	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	RNA-binding protein PNO1 OS=Homo sapiens GN=PNO1 PE=1 SV=1	PNO1_HUMAN	PNO1_HUMAN	RNA-binding protein PNO1 OS=Homo sapiens GN=PNO1 PE=1 SV=1	100.000000	0.003950	27907.300000	2.000000	3.000000	3.000000	Spectrum5994 scans:25124,	QAEQLSAAGEGGDAGR	NaN	R	M	99.700000	69.800000	43.600000	64.800000	Gln->pyro-Glu (-17)	1498.660000	2.000000	-0.000370	-0.250000	31.000000	46.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4	sp|O43172-2|PRP4_HUMAN	PRP4_HUMAN	Isoform 2 of U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4	99.400000	0.004480	58304.100000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.30614.30614.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30614"	QAEVLAEFER	NaN	R	R	99.300000	55.500000	50.100000	45.700000	Gln->pyro-Glu (-17)	1173.570000	2.000000	0.000470	0.400000	82.000000	91.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	EF1G_HUMAN	EF1G_HUMAN	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	100.000000	0.017100	50101.400000	6.000000	11.000000	13.000000	Spectrum16208 scans:5980,	QAFPNTNR	Q[+28]AFPNTNR	R	W	98.900000	49.600000	47.000000	25.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	984.500000	2.000000	-0.000690	-0.700000	182.000000	189.000000	0.422433	0.202467	0.478900	0.578100	0.338700	0.564700	NaN	NaN	NaN	0.530895	0.293742	0.832725	0.672503	0.459909	0.844159	NaN	NaN	NaN	0.601699	0.376826	0.074570	0.138153	0.573742	0.425747	0.140971	0.082150	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	EF1G_HUMAN	EF1G_HUMAN	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	100.000000	0.047600	50101.400000	3.000000	5.000000	19.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.11818.11818.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11818"	QAFPNTNR	NaN	R	W	99.000000	46.400000	47.300000	29.400000	Gln->pyro-Glu (-17)	929.440000	2.000000	0.000490	0.530000	182.000000	189.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	EF1G_HUMAN	EF1G_HUMAN	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	100.000000	0.047600	50101.400000	3.000000	5.000000	19.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.11830.11830.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11830"	QAFPNTNR	NaN	R	W	99.000000	46.700000	47.500000	29.400000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	939.440000	2.000000	0.000310	0.320000	182.000000	189.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform SRP40-4 of Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5	sp|Q13243|SRSF5_HUMAN	SRSF5_HUMAN	Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5 PE=1 SV=1	100.000000	0.007900	31246.800000	2.000000	4.000000	6.000000	Spectrum29057 scans:12534,	QAGEVTFADAHR	NaN	R	P	99.700000	63.200000	44.600000	50.500000	Gln->pyro-Glu (-17)	1283.590000	2.000000	-0.000430	-0.340000	130.000000	141.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform SRP40-4 of Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5	sp|Q13243|SRSF5_HUMAN	SRSF5_HUMAN	Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5 PE=1 SV=1	100.000000	0.007900	31246.800000	2.000000	4.000000	6.000000	Spectrum7222 scans:28063,	QAGEVTFADAHR	NaN	R	P	99.700000	67.400000	46.300000	50.200000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1289.610000	2.000000	-0.000420	-0.330000	130.000000	141.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform SRP40-4 of Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5	sp|Q13243|SRSF5_HUMAN	SRSF5_HUMAN	Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5 PE=1 SV=1	100.000000	0.007900	31246.800000	2.000000	4.000000	6.000000	Spectrum19421 scans:12664,	QAGEVTFADAHR	NaN	R	P	99.700000	73.500000	45.100000	59.400000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1293.600000	2.000000	-0.000760	-0.590000	130.000000	141.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	60S ribosomal protein L12 OS=Homo sapiens GN=RPL12 PE=1 SV=1	sp|P30050|RL12_HUMAN	RL12_HUMAN	60S ribosomal protein L12 OS=Homo sapiens GN=RPL12 PE=1 SV=1	99.300000	0.002500	17801.100000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.44079.44079.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44079"	QAQIEVVPSASALIIKALKEPPR	NaN	R	D	98.600000	65.900000	59.600000	65.900000	Gln->pyro-Glu (-17), Dimethyl (+28), Dimethyl (+28)	2496.470000	3.000000	-0.000960	-0.380000	68.000000	90.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	XPOT_HUMAN	XPOT_HUMAN	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	100.000000	0.022400	109948.600000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis.29217.29217.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29217"	QASLADCLNHAVGFASR	NaN	R	T	99.700000	82.900000	51.500000	74.800000	Gln->pyro-Glu (-17), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1808.850000	2.000000	-0.004900	-2.700000	644.000000	660.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	XPOT_HUMAN	XPOT_HUMAN	Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2	100.000000	0.022400	109948.600000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis.29215.29215.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29215"	QASLADCLNHAVGFASR	NaN	R	T	99.700000	82.600000	51.500000	79.400000	Gln->pyro-Glu (-17), Carbamidomethyl (+57)	1798.840000	2.000000	-0.001200	-0.680000	644.000000	660.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Putative eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens GN=EIF2S3L PE=5 SV=2	sp|Q2VIR3|IF2GL_HUMAN	IF2GL_HUMAN	Putative eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens GN=EIF2S3L PE=5 SV=2	100.000000	0.010500	51211.300000	4.000000	7.000000	8.000000	Spectrum20238 scans:15325,	QATINIGTIGH	Q[+28]ATINIGTIGH	R	V	99.700000	76.700000	49.300000	59.700000	Dimethyl (+28)	1151.630000	2.000000	0.000520	0.450000	39.000000	49.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum53728 scans:25802,	QATKDAGQISGLNVLR	NaN	R	V	99.100000	65.900000	52.500000	52.100000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1698.930000	2.000000	-0.003900	-2.300000	203.000000	218.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum53852 scans:25940,	QATKDAGQISGLNVLR	NaN	R	V	99.500000	78.200000	52.300000	56.800000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1690.960000	2.000000	-0.005000	-2.900000	203.000000	218.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum48551 scans:19888,	QATKDAGQISGLNVLR	Q[+28]ATKDAGQISGLNVLR	R	V	99.700000	56.900000	52.500000	42.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1744.000000	3.000000	0.000900	0.510000	203.000000	218.000000	14.432700	8.442300	0.720267	1.002400	0.237300	NaN	NaN	NaN	NaN	18.138369	12.248235	1.252420	1.166090	0.322221	NaN	NaN	NaN	NaN	9.652229	6.285228	0.426098	0.479494	0.503769	1.000000	0.138939	0.077577	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum48518 scans:19851,	QATKDAGQISGLNVLR	Q[+28]ATKDAGQISGLNVLR	R	V	99.700000	74.200000	51.800000	56.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1736.020000	3.000000	-0.000130	-0.078000	203.000000	218.000000	14.432700	8.442300	0.720267	1.002400	0.237300	NaN	NaN	NaN	NaN	18.138369	12.248235	1.252420	1.166090	0.322221	NaN	NaN	NaN	NaN	9.652229	6.285228	0.426098	0.479494	0.503597	0.927449	0.138856	0.077551	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.017900	73663.300000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.21040.21040.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21040"	QATKDAGQISGLNVLR	NaN	R	V	99.700000	65.100000	56.700000	52.900000	Gln->pyro-Glu (-17), Dimethyl (+28)	1680.910000	2.000000	-0.002400	-1.400000	203.000000	218.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.015800	72316.700000	7.000000	10.000000	12.000000	Spectrum29659 scans:14548,	QATKDAGTIAGLN	NaN	R	V	99.100000	58.700000	50.000000	34.000000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32)	1273.680000	2.000000	0.000520	0.410000	182.000000	194.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	97.300000	0.000000	72316.700000	0.000000	0.000000	0.000000	Nsco_Tails_biological_replicate_3_fraction5A.14573.14573.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14573"	QATKDAGTIAGLN	NaN	R	V	99.000000	55.000000	53.100000	37.800000	Gln->pyro-Glu (-17), Dimethyl (+28)	1269.660000	2.000000	0.000740	0.580000	182.000000	194.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.015800	72316.700000	7.000000	10.000000	12.000000	Spectrum53798 scans:25880,	QATKDAGTIAGLNVMR	NaN	R	I	99.700000	69.100000	52.300000	48.100000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1665.910000	2.000000	-0.001700	-1.000000	182.000000	197.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.004670	72316.700000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.44419.44419.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44419"	QATKDAGTIAGLNVMR	NaN	R	I	99.700000	82.400000	55.600000	69.000000	Gln->pyro-Glu (-17), Dimethyl (+28)	1655.860000	2.000000	-0.005200	-3.100000	182.000000	197.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.017900	72316.700000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.16227.16227.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16227"	QATKDAGTIAGLNVMR	NaN	R	I	99.700000	66.100000	55.400000	55.100000	Gln->pyro-Glu (-17), Dimethyl (+28), Oxidation (+16)	1671.860000	2.000000	-0.001900	-1.200000	182.000000	197.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Sulfatase-modifying factor 2 OS=Homo sapiens GN=SUMF2 PE=4 SV=1	sp|Q8NBJ7-3|SUMF2_HUMAN	SUMF2_HUMAN	Isoform 3 of Sulfatase-modifying factor 2 OS=Homo sapiens GN=SUMF2	99.600000	0.002880	37377.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.11027.11027.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11027"	QATSMVQLQGGR	NaN	G	F	99.700000	59.400000	50.000000	45.500000	Gln->pyro-Glu (-17), Oxidation (+16)	1273.610000	2.000000	-0.002500	-2.000000	26.000000	37.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	SSBP_HUMAN	SSBP_HUMAN	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	100.000000	0.011500	17241.700000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.45531.45531.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=45531"	QATTIIADNIIFLSDQTKEKE	NaN	R	-	99.700000	93.700000	59.800000	88.900000	Gln->pyro-Glu (-17), Dimethyl (+28), Dimethyl (+28)	2416.270000	2.000000	-0.000300	-0.130000	128.000000	148.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	SSBP_HUMAN	SSBP_HUMAN	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	100.000000	0.032900	17241.700000	2.000000	8.000000	25.000000	Spectrum64832 scans:38990,	QATTIIADNIIFLSDQTKEKE	Q[+28]ATTIIADNIIFLSDQTKEKE	R	-	99.600000	43.800000	55.500000	38.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	2477.360000	3.000000	0.000920	0.370000	128.000000	148.000000	6.792767	4.427433	0.712000	13.710550	NaN	26.904450	NaN	NaN	NaN	8.536844	6.423397	1.238046	15.949455	NaN	40.218925	NaN	NaN	NaN	12.243149	6.423397	0.050146	NaN	0.195293	NaN	0.137616	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	SSBP_HUMAN	SSBP_HUMAN	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	100.000000	0.032900	17241.700000	2.000000	8.000000	25.000000	Spectrum72702 scans:49246,	QATTIIADNIIFLSDQTKEKE	NaN	R	-	99.700000	73.200000	55.300000	59.000000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	2424.330000	2.000000	0.000710	0.290000	128.000000	148.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	SSBP_HUMAN	SSBP_HUMAN	Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1	100.000000	0.032900	17241.700000	2.000000	8.000000	25.000000	Spectrum64942 scans:39112,	QATTIIADNIIFLSDQTKEKE	Q[+28]ATTIIADNIIFLSDQTKEKE	R	-	99.700000	71.000000	55.300000	54.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	2469.380000	3.000000	-0.002800	-1.100000	128.000000	148.000000	6.792767	4.427433	0.712000	13.710550	NaN	26.904450	NaN	NaN	NaN	8.536844	6.423397	1.238046	15.949455	NaN	40.218925	NaN	NaN	NaN	12.243149	6.423397	0.050146	NaN	0.141814	NaN	0.137453	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.021100	69396.600000	5.000000	15.000000	16.000000	Spectrum66479 scans:40856,	QAVDQIKSQEQLAAELAEYTAK	NaN	R	I	99.700000	82.100000	55.200000	75.100000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	2488.310000	3.000000	0.004300	1.700000	406.000000	427.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.013900	69396.600000	3.000000	5.000000	6.000000	Nsco_Tails_biological_replicate_3_fraction6A.40865.40865.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40865"	QAVDQIKSQEQLAAELAEYTAK	NaN	R	I	99.000000	78.500000	59.500000	75.700000	Gln->pyro-Glu (-17), Dimethyl (+28), Dimethyl (+28)	2472.280000	3.000000	0.003200	1.300000	406.000000	427.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.005760	69396.600000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.48617.48617.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=48617"	QAVDQIKSQEQLAAELAEYTAKIALLEEAR	NaN	R	R	99.700000	96.500000	63.400000	90.800000	Gln->pyro-Glu (-17), Dimethyl (+28), Dimethyl (+28)	3367.790000	3.000000	-0.000500	-0.150000	406.000000	435.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4	tr|M0R0R2|M0R0R2_HUMAN	M0R0R2_HUMAN	40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=1	99.800000	0.002880	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.13143.13143.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13143"	QAVDVSPLR	Q[+28]AVDVSPLR	R	R	99.300000	57.700000	52.500000	35.300000	Dimethyl (+28)	1011.570000	2.000000	0.000530	0.520000	0.000000	0.000000	0.489767	0.173867	0.356733	0.324700	2.158350	4.587800	10.062186	NaN	NaN	0.615517	0.252249	0.620298	0.377723	2.930749	6.858211	6.729884	NaN	NaN	2.574374	1.591499	0.341223	0.445341	0.350101	1.000000	0.009344	0.072382	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4	tr|M0R0F0|M0R0F0_HUMAN	M0R0F0_HUMAN	40S ribosomal protein S5 (Fragment) OS=Homo sapiens GN=RPS5 PE=1 SV=1	100.000000	0.003950	0.000000	2.000000	3.000000	3.000000	Spectrum18726 scans:11119,	QAVDVSPLR	Q[+28]AVDVSPLR	R	R	98.800000	52.300000	48.800000	22.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1021.580000	2.000000	0.000049	0.048000	0.000000	0.000000	0.489767	0.173867	0.356733	0.324700	2.158350	4.587800	10.062186	NaN	NaN	0.615517	0.252249	0.620298	0.377723	2.930749	6.858211	6.729884	NaN	NaN	2.574374	1.591499	0.341223	0.445341	0.349998	1.000000	0.009305	0.072360	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4	tr|M0R0F0|M0R0F0_HUMAN	M0R0F0_HUMAN	40S ribosomal protein S5 (Fragment) OS=Homo sapiens GN=RPS5 PE=1 SV=1	100.000000	0.003950	0.000000	2.000000	3.000000	3.000000	Spectrum5894 scans:24887,	QAVDVSPLR	Q[+28]AVDVSPLR	R	R	99.400000	57.800000	48.800000	34.900000	Dimethyl (+28), Label:13C(6) (+6)	1017.590000	2.000000	-0.000210	-0.210000	0.000000	0.000000	0.489767	0.173867	0.356733	0.324700	2.158350	4.587800	10.062186	NaN	NaN	0.615517	0.252249	0.620298	0.377723	2.930749	6.858211	6.729884	NaN	NaN	2.574374	1.591499	0.341223	0.445341	0.349894	1.000000	0.009273	0.072201	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4	tr|M0R0F0|M0R0F0_HUMAN	M0R0F0_HUMAN	40S ribosomal protein S5 (Fragment) OS=Homo sapiens GN=RPS5 PE=1 SV=1	100.000000	0.008960	0.000000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.17403.17403.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17403"	QAVDVSPLR	NaN	R	R	99.100000	54.700000	51.500000	30.700000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	976.520000	2.000000	0.000450	0.460000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum45932 scans:16863,	QAVTNPNNTFYATKR	NaN	R	L	99.700000	84.700000	52.000000	67.600000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1744.910000	2.000000	-0.002800	-1.600000	108.000000	122.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum41213 scans:11461,	QAVTNPNNTFYATKR	Q[+28]AVTNPNNTFYATKR	R	L	99.700000	81.200000	52.800000	62.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1789.970000	3.000000	-0.002000	-1.100000	108.000000	122.000000	0.692700	0.144167	0.095067	NaN	NaN	NaN	NaN	NaN	NaN	0.870554	0.209159	0.165305	NaN	NaN	NaN	NaN	NaN	NaN	0.870554	0.209159	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum41217 scans:11465,	QAVTNPNNTFYATKR	Q[+28]AVTNPNNTFYATKR	R	L	99.700000	92.100000	52.500000	69.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1797.950000	3.000000	-0.000980	-0.550000	108.000000	122.000000	0.692700	0.144167	0.095067	NaN	NaN	NaN	NaN	NaN	NaN	0.870554	0.209159	0.165305	NaN	NaN	NaN	NaN	NaN	NaN	0.870554	0.209159	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.017900	73663.300000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.14014.14014.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14014"	QAVTNPNNTFYATKR	NaN	R	L	99.700000	74.100000	55.200000	64.000000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1752.890000	2.000000	-0.005900	-3.400000	108.000000	122.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.053200	73663.300000	10.000000	19.000000	23.000000	Nsco_Tails_biological_replicate_3_fraction6A.16775.16775.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16775"	QAVTNPNNTFYATKR	NaN	R	L	99.700000	76.800000	54.600000	73.800000	Gln->pyro-Glu (-17), Dimethyl (+28)	1734.870000	2.000000	-0.002300	-1.400000	108.000000	122.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Telomeric repeat-binding factor 2-interacting protein 1 OS=Homo sapiens GN=TERF2IP PE=1 SV=1	TE2IP_HUMAN	TE2IP_HUMAN	Telomeric repeat-binding factor 2-interacting protein 1 OS=Homo sapiens GN=TERF2IP PE=1 SV=1	99.900000	0.010800	44242.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.11589.11589.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11589"	QDDIDLQKDDEDTR	NaN	R	E	99.700000	67.100000	47.800000	50.500000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1733.770000	2.000000	-0.003200	-1.900000	365.000000	378.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1	sp|Q14980|NUMA1_HUMAN	NUMA1_HUMAN	Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1 PE=1 SV=2	100.000000	0.007900	238241.600000	6.000000	6.000000	6.000000	Spectrum6391 scans:25950,	QDHAQQLATAAEER	NaN	R	E	99.500000	72.600000	46.700000	55.500000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1555.730000	2.000000	-0.005000	-3.200000	579.000000	592.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1	sp|Q14980|NUMA1_HUMAN	NUMA1_HUMAN	Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1 PE=1 SV=2	100.000000	0.012500	238241.600000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.13363.13363.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13363"	QDHAQQLATAAEER	NaN	R	E	99.600000	58.200000	50.200000	50.000000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1559.730000	2.000000	0.005000	3.200000	579.000000	592.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1	sp|Q14980|NUMA1_HUMAN	NUMA1_HUMAN	Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1 PE=1 SV=2	100.000000	0.012500	238241.600000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.13371.13371.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13371"	QDHAQQLATAAEER	NaN	R	E	99.700000	76.900000	48.800000	70.600000	Gln->pyro-Glu (-17)	1549.700000	2.000000	-0.007700	-5.000000	579.000000	592.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.123000	57471.900000	10.000000	25.000000	49.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.42728.42728.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42728"	QDLMNIAGTTLSSKLLTH	NaN	R	H	98.700000	54.800000	57.500000	50.000000	Gln->pyro-Glu (-17), Dimethyl (+28)	1953.030000	2.000000	0.001000	0.520000	157.000000	174.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.123000	57471.900000	10.000000	25.000000	49.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.42724.42724.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42724"	QDLMNIAGTTLSSKLLTH	NaN	R	H	99.500000	59.600000	57.700000	51.700000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36)	1961.040000	2.000000	-0.001200	-0.620000	157.000000	174.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.112000	57471.900000	9.000000	17.000000	25.000000	Nsco_Tails_biological_replicate2_apoptosis.30098.30098.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30098"	QDLMNIAGTTLSSKLLTH	NaN	R	H	99.400000	60.600000	57.100000	49.100000	Gln->pyro-Glu (-17), Oxidation (+16), Dimethyl (+28)	1969.020000	2.000000	-0.002800	-1.400000	157.000000	174.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Putative eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens GN=EIF2S3L PE=5 SV=2	sp|Q2VIR3|IF2GL_HUMAN	IF2GL_HUMAN	Putative eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens GN=EIF2S3L PE=5 SV=2	100.000000	0.010500	51211.300000	4.000000	7.000000	8.000000	Spectrum13003 scans:48735,	QDLTTLDVTKLTPLSHEVISR	NaN	R	Q	99.700000	58.400000	55.300000	47.800000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2394.310000	3.000000	-0.004000	-1.700000	18.000000	38.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Homo sapiens GN=PPP6R3 PE=4 SV=1	H7BXH2_HUMAN	H7BXH2_HUMAN	Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Homo sapiens GN=PPP6R3 PE=4 SV=1	99.900000	0.004480	92392.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.35940.35940.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35940"	QDVLNWLNEEKIIQR	NaN	R	L	99.700000	68.700000	57.600000	59.500000	Gln->pyro-Glu (-17), Dimethyl (+28)	1908.010000	2.000000	0.001100	0.560000	180.000000	194.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum46539 scans:17579,	QEAEEAKEALLQASR	Q[+28]EAEEAKEALLQASR	R	D	99.700000	78.300000	52.700000	55.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1737.950000	2.000000	-0.003200	-1.900000	394.000000	408.000000	48.220467	20.432967	0.325233	NaN	NaN	0.078900	NaN	NaN	NaN	60.601315	29.644501	0.565525	NaN	NaN	0.117946	NaN	NaN	NaN	60.601315	29.644501	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum54603 scans:26778,	QEAEEAKEALLQASR	NaN	R	D	99.700000	80.200000	51.900000	61.500000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1692.890000	2.000000	-0.002600	-1.600000	394.000000	408.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum31103 scans:19422,	QEAEEAKEALLQASR	NaN	R	D	99.700000	84.100000	51.200000	75.100000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1700.870000	2.000000	-0.002100	-1.200000	394.000000	408.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum46570 scans:17615,	QEAEEAKEALLQASR	Q[+28]EAEEAKEALLQASR	R	D	99.700000	90.300000	52.300000	68.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1745.930000	2.000000	-0.002700	-1.500000	394.000000	408.000000	48.220467	20.432967	0.325233	NaN	NaN	0.078900	NaN	NaN	NaN	60.601315	29.644501	0.565525	NaN	NaN	0.117946	NaN	NaN	NaN	60.601315	29.644501	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.017500	67803.800000	1.000000	4.000000	7.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.24946.24946.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24946"	QEAEEAKEALLQASR	NaN	R	D	99.700000	76.300000	54.600000	70.400000	Gln->pyro-Glu (-17), Dimethyl (+28)	1682.840000	2.000000	-0.002800	-1.700000	394.000000	408.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.048600	67803.800000	7.000000	14.000000	21.000000	Nsco_Tails_biological_replicate_3_fraction6A.17609.17609.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17609"	QEAEEAKEALLQASR	Q[+28]EAEEAKEALLQASR	R	D	99.700000	79.500000	56.300000	67.800000	Dimethyl (+28), Dimethyl (+28)	1727.900000	2.000000	-0.000540	-0.310000	394.000000	408.000000	48.220467	20.432967	0.325233	NaN	NaN	0.078900	NaN	NaN	NaN	60.601315	29.644501	0.565525	NaN	NaN	0.117946	NaN	NaN	NaN	60.601315	29.644501	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2	PRP8_HUMAN	PRP8_HUMAN	Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2	97.800000	0.002500	273590.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.6729.6729.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6729"	QEAIAQNR	NaN	R	R	99.000000	46.100000	48.900000	28.800000	Gln->pyro-Glu (-17)	911.450000	2.000000	-0.000670	-0.740000	1394.000000	1401.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2	sp|Q08J23|NSUN2_HUMAN	NSUN2_HUMAN	tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2 PE=1 SV=2	99.800000	0.002500	86454.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.44933.44933.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44933"	QEAVSMIPPLLLNVRPH	NaN	R	H	99.200000	57.300000	57.800000	45.300000	Gln->pyro-Glu (-17)	1896.030000	2.000000	-0.003900	-2.000000	161.000000	177.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369|FLNB_HUMAN	FLNB_HUMAN	Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2	100.000000	0.005010	278140.800000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.10992.10992.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10992"	QEFTVDTR	Q[+28]EFTVDTR	D	G	99.000000	52.500000	49.800000	29.400000	Dimethyl (+28)	1022.500000	2.000000	0.001500	1.400000	962.000000	969.000000	2.544867	3.021600	1.119000	1.857550	8.853950	3.167900	0.784543	2.273300	2.662857	3.198274	4.383790	1.945749	2.160884	12.022473	4.735630	0.524725	0.968177	1.276048	1.961294	5.791480	0.127918	0.191402	1.000000	0.196732	0.009080	0.135972	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2	sp|P50570-4|DYN2_HUMAN	DYN2_HUMAN	Isoform 4 of Dynamin-2 OS=Homo sapiens GN=DNM2	97.200000	0.001320	0.000000	1.000000	1.000000	1.000000	Spectrum27710 scans:9063,	QEIEAETDR	NaN	R	V	99.300000	48.700000	41.600000	19.700000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1082.470000	2.000000	-0.000740	-0.690000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 8 of Dynamin-1-like protein OS=Homo sapiens GN=DNM1L	sp|O00429-2|DNM1L_HUMAN	DNM1L_HUMAN	Isoform 4 of Dynamin-1-like protein OS=Homo sapiens GN=DNM1L	99.800000	0.001320	80519.600000	1.000000	1.000000	1.000000	Spectrum27126 scans:8010,	QEIENETER	NaN	R	I	99.600000	62.800000	41.900000	29.100000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1139.500000	2.000000	0.001100	0.930000	109.000000	117.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Coatomer subunit gamma-1 OS=Homo sapiens GN=COPG1 PE=1 SV=1	COPG1_HUMAN	COPG1_HUMAN	Coatomer subunit gamma-1 OS=Homo sapiens GN=COPG1 PE=1 SV=1	98.900000	0.007510	97701.400000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.42667.42667.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42667"	QEIFQEQLAAVPEFR	NaN	R	G	99.700000	71.800000	55.300000	64.200000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1796.910000	2.000000	0.008100	4.500000	610.000000	624.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Coatomer subunit gamma-1 OS=Homo sapiens GN=COPG1 PE=1 SV=1	COPG1_HUMAN	COPG1_HUMAN	Coatomer subunit gamma-1 OS=Homo sapiens GN=COPG1 PE=1 SV=1	98.900000	0.004480	97701.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.35996.35996.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35996"	QEIFQEQLAAVPEFR	NaN	R	G	99.700000	91.800000	54.700000	77.100000	Gln->pyro-Glu (-17)	1786.890000	2.000000	-0.001200	-0.670000	610.000000	624.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of Coatomer subunit alpha OS=Homo sapiens GN=COPA	sp|P53621|COPA_HUMAN	COPA_HUMAN	Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2	98.300000	0.002330	138331.300000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.41599.41599.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41599"	QELILSNSEDKSIR	NaN	R	V	99.700000	82.600000	55.300000	62.300000	Gln->pyro-Glu (-17), Dimethyl (+28)	1641.850000	2.000000	-0.012000	-7.300000	261.000000	274.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Coatomer subunit alpha OS=Homo sapiens GN=COPA	sp|P53621|COPA_HUMAN	COPA_HUMAN	Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2	98.900000	0.008960	138331.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.19437.19437.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19437"	QELILSNSEDKSIR	NaN	R	V	98.700000	62.700000	56.300000	55.100000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1659.890000	2.000000	0.005500	3.300000	261.000000	274.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1	sp|Q14980|NUMA1_HUMAN	NUMA1_HUMAN	Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1 PE=1 SV=2	100.000000	0.007900	238241.600000	6.000000	6.000000	6.000000	Spectrum3519 scans:18737,	QELTSQAER	NaN	R	A	98.600000	46.000000	44.600000	36.200000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1053.500000	2.000000	-0.001400	-1.300000	1313.000000	1321.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.008640	37412.300000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.2490.2490.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2490"	QEMQEVQSSR	Q[+28]EMQEVQSSR	R	S	99.700000	74.800000	46.800000	59.000000	Dimethyl (+28), Oxidation (+16)	1264.570000	2.000000	-0.006300	-5.000000	191.000000	200.000000	0.393067	0.505533	1.336867	NaN	NaN	NaN	NaN	NaN	NaN	0.493989	0.733437	2.324581	NaN	NaN	NaN	NaN	NaN	NaN	0.493989	0.733437	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.145000	37412.300000	2.000000	11.000000	11.000000	Nsco_Tails_biological_replicate_3_fraction2A.2252.2252.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2252"	QEMQEVQSSR	Q[+28]EMQEVQSSR	R	S	99.400000	61.400000	48.900000	48.600000	Dimethyl (+28), Oxidation (+16), Label:13C(6) (+6)	1270.590000	2.000000	0.000360	0.280000	191.000000	200.000000	0.393067	0.505533	1.336867	NaN	NaN	NaN	NaN	NaN	NaN	0.493989	0.733437	2.324581	NaN	NaN	NaN	NaN	NaN	NaN	0.493989	0.733437	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.145000	37412.300000	2.000000	11.000000	11.000000	Nsco_Tails_biological_replicate_3_fraction2A.8541.8541.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8541"	QEMQEVQSSR	NaN	R	S	99.600000	62.600000	44.800000	46.500000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1213.530000	2.000000	0.000830	0.690000	191.000000	200.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum1168 scans:12227,	QEMQEVQSSR	Q[+28]EMQEVQSSR	R	S	98.700000	47.700000	43.800000	32.100000	Acetyl (+42), Label:13C(6) (+6)	1268.570000	2.000000	-0.002300	-1.800000	191.000000	200.000000	0.393067	0.505533	1.336867	NaN	NaN	NaN	NaN	NaN	NaN	0.493989	0.733437	2.324581	NaN	NaN	NaN	NaN	NaN	NaN	0.493989	0.733437	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum17577 scans:8544,	QEMQEVQSSR	NaN	R	S	98.900000	46.700000	42.800000	28.200000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1209.540000	2.000000	0.000017	0.014000	191.000000	200.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum72 scans:6787,	QEMQEVQSSR	Q[+28]EMQEVQSSR	R	S	99.000000	47.800000	44.300000	33.500000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1274.580000	2.000000	-0.000870	-0.680000	191.000000	200.000000	0.393067	0.505533	1.336867	NaN	NaN	NaN	NaN	NaN	NaN	0.493989	0.733437	2.324581	NaN	NaN	NaN	NaN	NaN	NaN	0.493989	0.733437	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum1199 scans:12315,	QEMQEVQSSR	Q[+28]EMQEVQSSR	R	S	99.400000	63.100000	46.100000	33.800000	Dimethyl (+28), Label:13C(6) (+6)	1254.590000	2.000000	-0.003000	-2.400000	191.000000	200.000000	0.393067	0.505533	1.336867	NaN	NaN	NaN	NaN	NaN	NaN	0.493989	0.733437	2.324581	NaN	NaN	NaN	NaN	NaN	NaN	0.493989	0.733437	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum17588 scans:8562,	QEMQEVQSSR	NaN	R	S	99.500000	52.900000	41.300000	37.700000	Gln->pyro-Glu (-17)	1203.520000	2.000000	-0.000370	-0.310000	191.000000	200.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum15134 scans:4156,	QEMQEVQSSR	NaN	R	S	99.600000	52.600000	39.900000	49.300000	Gln->pyro-Glu (-17), Oxidation (+16)	1219.510000	2.000000	-0.000410	-0.330000	191.000000	200.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum15230 scans:4298,	QEMQEVQSSR	Q[+28]EMQEVQSSR	R	S	99.700000	61.200000	45.300000	43.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1258.580000	2.000000	-0.000570	-0.450000	191.000000	200.000000	0.393067	0.505533	1.336867	NaN	NaN	NaN	NaN	NaN	NaN	0.493989	0.733437	2.324581	NaN	NaN	NaN	NaN	NaN	NaN	0.493989	0.733437	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum15221 scans:4283,	QEMQEVQSSR	Q[+28]EMQEVQSSR	R	S	99.700000	61.900000	45.000000	45.100000	Dimethyl (+28)	1248.580000	2.000000	-0.001100	-0.870000	191.000000	200.000000	0.393067	0.505533	1.336867	NaN	NaN	NaN	NaN	NaN	NaN	0.493989	0.733437	2.324581	NaN	NaN	NaN	NaN	NaN	NaN	0.493989	0.733437	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.038200	37412.300000	6.000000	20.000000	29.000000	Spectrum15141 scans:4166,	QEMQEVQSSR	NaN	R	S	99.700000	60.800000	40.000000	46.700000	Gln->pyro-Glu (-17), Oxidation (+16), Label:13C(6)15N(4) (+10)	1229.520000	2.000000	-0.001100	-0.910000	191.000000	200.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	sp|P22626|ROA2_HUMAN	ROA2_HUMAN	Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2	100.000000	0.022400	37412.300000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis.4535.4535.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4535"	QEMQEVQSSR	NaN	R	S	99.400000	61.100000	43.900000	49.600000	Gln->pyro-Glu (-17), Oxidation (+16), Label:13C(6) (+6)	1225.530000	2.000000	-0.008600	-7.000000	191.000000	200.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	ADA_HUMAN	ADA_HUMAN	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	100.000000	0.009440	40747.100000	4.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.63775.63775.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=63775"	QENMHFEICPW	NaN	R	S	99.500000	44.500000	37.000000	37.300000	Gln->pyro-Glu (-17), Oxidation (+16), Carbamidomethyl (+57)	1488.580000	2.000000	-0.001800	-1.200000	254.000000	264.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Glutathione reductase, mitochondrial OS=Homo sapiens GN=GSR	sp|P00390|GSHR_HUMAN	GSHR_HUMAN	Glutathione reductase, mitochondrial OS=Homo sapiens GN=GSR PE=1 SV=2	100.000000	0.005270	56239.400000	2.000000	3.000000	4.000000	Spectrum63983 scans:38043,	QEPQPQGPPPAAGAVASYDYLVIGGGSGGLASAR	Q[+28]EPQPQGPPPAAGAVASYDYLVIGGGSGGLASAR	R	R	99.700000	66.800000	56.300000	53.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	3275.650000	3.000000	0.006100	1.900000	48.000000	81.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1	sp|Q14980|NUMA1_HUMAN	NUMA1_HUMAN	Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1 PE=1 SV=2	100.000000	0.012500	238241.600000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.31357.31357.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31357"	QEQHEAQAQVAELELQLR	NaN	R	S	99.700000	83.900000	56.300000	69.900000	Gln->pyro-Glu (-17)	2102.050000	2.000000	0.006000	2.900000	664.000000	681.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens GN=CHERP PE=1 SV=3	CHERP_HUMAN	CHERP_HUMAN	Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens GN=CHERP PE=1 SV=3	96.500000	0.001320	103684.700000	1.000000	1.000000	1.000000	Spectrum2116 scans:15046,	QEQVTAAVAH	Q[+28]EQVTAAVAH	R	A	99.200000	53.700000	47.900000	42.600000	Dimethyl (+28)	1080.560000	2.000000	-0.001100	-1.000000	128.000000	137.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=2 SV=1	SYSC_HUMAN	SYSC_HUMAN	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3	100.000000	0.009220	58760.600000	3.000000	7.000000	7.000000	Spectrum23842 scans:2376,	QEVGSHGR	NaN	R	D	99.000000	49.200000	44.400000	30.300000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	857.410000	2.000000	0.000097	0.110000	303.000000	310.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=2 SV=1	SYSC_HUMAN	SYSC_HUMAN	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3	100.000000	0.009220	58760.600000	3.000000	7.000000	7.000000	Spectrum23837 scans:2370,	QEVGSHGR	NaN	R	D	99.000000	53.900000	43.700000	32.500000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	861.400000	2.000000	0.000120	0.140000	303.000000	310.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=2 SV=1	SYSC_HUMAN	SYSC_HUMAN	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3	100.000000	0.009220	58760.600000	3.000000	7.000000	7.000000	Spectrum23835 scans:2366,	QEVGSHGR	NaN	R	D	99.000000	68.800000	42.000000	39.700000	Gln->pyro-Glu (-17)	851.390000	2.000000	0.000770	0.900000	303.000000	310.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 4 of Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1	sp|Q8IWZ3-4|ANKH1_HUMAN	ANKH1_HUMAN	Isoform 4 of Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1	98.100000	0.005010	269277.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.43725.43725.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43725"	QEVVDLLLAR	NaN	R	G	99.200000	52.100000	53.500000	30.000000	Gln->pyro-Glu (-17)	1137.640000	2.000000	0.000064	0.057000	1135.000000	1144.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 4 of Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1	sp|Q8IWZ3|ANKH1_HUMAN	ANKH1_HUMAN	Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1	98.900000	0.004480	269437.100000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.36871.36871.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36871"	QEVVDLLLAR	NaN	R	G	99.700000	73.000000	53.600000	50.200000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1147.650000	2.000000	-0.000047	-0.041000	1135.000000	1144.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Ankyrin repeat domain-containing protein 17 (Fragment) OS=Homo sapiens GN=ANKRD17 PE=4 SV=1	H0YM23_HUMAN	H0YM23_HUMAN	Ankyrin repeat domain-containing protein 17 (Fragment) OS=Homo sapiens GN=ANKRD17 PE=4 SV=1	100.000000	0.004480	263346.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.38395.38395.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38395"	QEVVELLLAR	NaN	R	G	99.700000	69.100000	53.700000	57.200000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1161.660000	2.000000	0.000120	0.110000	1047.000000	1056.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.030300	62047.800000	7.000000	12.000000	23.000000	Spectrum22093 scans:10032,	QEYEQLIAK	QEYEQLIAK	R	N	99.700000	74.700000	48.300000	55.700000		1120.580000	2.000000	0.000560	0.500000	328.000000	336.000000	1.829833	0.416300	1.152967	1.460150	1.749250	1.539300	1.322643	NaN	NaN	2.299652	0.603975	2.004811	1.698590	2.375246	2.301069	0.884622	NaN	NaN	1.627621	1.489611	0.057995	0.341480	1.000000	0.840381	0.008836	0.666667	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.006940	62047.800000	3.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction6A.27048.27048.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27048"	QEYEQLIAK	NaN	R	N	99.700000	69.100000	52.000000	57.800000	Gln->pyro-Glu (-17), Dimethyl (+28)	1131.580000	2.000000	-0.000300	-0.260000	328.000000	336.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.005010	62047.800000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.21018.21018.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21018"	QEYEQLIAKNR	NaN	R	K	99.500000	55.200000	53.900000	41.100000	Gln->pyro-Glu (-17), Dimethyl (+28)	1401.720000	2.000000	-0.001200	-0.860000	328.000000	338.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1	EIF3E_HUMAN	EIF3E_HUMAN	Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1	100.000000	0.010000	52204.600000	2.000000	3.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.30621.30621.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30621"	QEYLDTLYR	NaN	R	Y	99.700000	69.200000	49.400000	51.400000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1192.570000	2.000000	0.001400	1.100000	125.000000	133.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=3	GLGB_HUMAN	GLGB_HUMAN	1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=3	94.700000	0.002500	80459.100000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.32099.32099.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32099"	QFHLTDDDLLR	NaN	R	Y	98.600000	48.200000	51.300000	37.500000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1364.660000	2.000000	0.000300	0.220000	566.000000	576.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2	SAE2_HUMAN	SAE2_HUMAN	SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2	100.000000	0.002500	71207.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.49067.49067.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=49067"	QFILVMNALDNR	NaN	R	A	99.500000	58.800000	53.800000	40.100000	Gln->pyro-Glu (-17)	1415.730000	2.000000	0.002200	1.600000	108.000000	119.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	COMM domain containing 6 OS=Homo sapiens GN=COMMD6 PE=4 SV=1	B0QZ40_HUMAN	B0QZ40_HUMAN	COMM domain containing 6 OS=Homo sapiens GN=COMMD6 PE=4 SV=1	98.900000	0.005010	11633.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.50197.50197.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=50197"	QFKEIAAVIETV	NaN	R	-	99.700000	61.800000	54.900000	43.500000	Gln->pyro-Glu (-17), Dimethyl (+28)	1357.750000	2.000000	-0.000067	-0.049000	89.000000	100.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.025900	28786.800000	5.000000	8.000000	9.000000	Nsco_Tails_biological_replicate1_apoptosis.15419.15419.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15419"	QFLGDEETVR	Q[+28]FLGDEETVR	M	K	99.500000	57.800000	51.600000	41.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1230.610000	2.000000	-0.000290	-0.230000	231.000000	240.000000	0.562967	0.325033	0.578033	0.711200	0.497150	0.695950	1.577814	2.395714	3.403900	0.707511	0.471564	1.005101	0.827338	0.675063	1.040362	1.055288	1.020312	1.631158	0.863379	0.722313	0.013671	0.045814	0.031088	1.000000	0.008792	0.033920	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.032900	28786.800000	10.000000	21.000000	25.000000	Spectrum54756 scans:26948,	QFLGDEETVR	NaN	M	K	99.400000	54.500000	44.800000	32.100000	Gln->pyro-Glu (-17)	1175.540000	2.000000	-0.001400	-1.200000	231.000000	240.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.032900	28786.800000	10.000000	21.000000	25.000000	Spectrum54755 scans:26947,	QFLGDEETVR	NaN	M	K	99.700000	66.600000	46.300000	43.800000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1181.570000	2.000000	-0.000740	-0.630000	231.000000	240.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	ARPC2_HUMAN	ARPC2_HUMAN	Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1	100.000000	0.025000	34315.700000	3.000000	7.000000	19.000000	Spectrum27076 scans:7912,	QFQEEGKEGENR	NaN	F	A	99.600000	59.400000	45.000000	44.900000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1478.670000	2.000000	-0.002100	-1.400000	130.000000	141.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Aldehyde dehydrogenase family 16 member A1 OS=Homo sapiens GN=ALDH16A1 PE=4 SV=1	sp|Q8IZ83|A16A1_HUMAN	A16A1_HUMAN	Aldehyde dehydrogenase family 16 member A1 OS=Homo sapiens GN=ALDH16A1 PE=1 SV=2	94.400000	0.004480	85108.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.28041.28041.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28041"	QGAELKAAEAEVELSAR	NaN	R	R	98.600000	53.400000	55.900000	45.300000	Gln->pyro-Glu (-17), Dimethyl (+28)	1781.910000	2.000000	-0.003000	-1.700000	613.000000	629.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of C-terminal-binding protein 1 OS=Homo sapiens GN=CTBP1	sp|Q13363-2|CTBP1_HUMAN	CTBP1_HUMAN	Isoform 2 of C-terminal-binding protein 1 OS=Homo sapiens GN=CTBP1	100.000000	0.001320	46386.900000	1.000000	1.000000	1.000000	Spectrum45034 scans:15851,	QGAFLVNTAR	Q[+28]GAFLVNTAR	R	G	99.000000	67.300000	49.400000	43.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1113.610000	2.000000	-0.003300	-3.000000	246.000000	255.000000	0.196267	0.165600	1.006267	0.750900	NaN	NaN	NaN	NaN	NaN	0.246659	0.240255	1.749725	0.873520	NaN	NaN	NaN	NaN	NaN	0.560090	0.240255	0.324797	NaN	0.355423	NaN	0.127667	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2	SYLC_HUMAN	SYLC_HUMAN	Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2	100.000000	0.003950	134452.800000	1.000000	3.000000	3.000000	Spectrum3471 scans:18596,	QGDNCDSIIR	Q[+28]GDNC[+57]DSIIR	R	R	99.700000	62.600000	44.600000	41.200000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1214.560000	2.000000	-0.001500	-1.200000	1089.000000	1098.000000	0.675533	1.577333	2.777900	0.575250	3.440050	6.341150	NaN	NaN	NaN	0.848980	2.288422	4.830290	0.669187	4.671125	9.479259	NaN	NaN	NaN	0.759084	3.479774	0.075044	0.209993	0.549371	1.000000	0.127597	0.458995	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2	SYLC_HUMAN	SYLC_HUMAN	Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2	100.000000	0.003950	134452.800000	1.000000	3.000000	3.000000	Spectrum17113 scans:7626,	QGDNCDSIIR	Q[+28]GDNC[+57]DSIIR	R	R	99.700000	83.100000	45.600000	50.800000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1210.570000	2.000000	-0.001200	-0.970000	1089.000000	1098.000000	0.675533	1.577333	2.777900	0.575250	3.440050	6.341150	NaN	NaN	NaN	0.848980	2.288422	4.830290	0.669187	4.671125	9.479259	NaN	NaN	NaN	0.759084	3.479774	0.075044	0.209993	0.548215	1.000000	0.127527	0.458086	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2	SYLC_HUMAN	SYLC_HUMAN	Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2	100.000000	0.003950	134452.800000	1.000000	3.000000	3.000000	Spectrum17101 scans:7602,	QGDNCDSIIR	Q[+28]GDNC[+57]DSIIR	R	R	99.700000	105.000000	44.400000	73.000000	Dimethyl (+28), Carbamidomethyl (+57)	1204.550000	2.000000	-0.001000	-0.870000	1089.000000	1098.000000	0.675533	1.577333	2.777900	0.575250	3.440050	6.341150	NaN	NaN	NaN	0.848980	2.288422	4.830290	0.669187	4.671125	9.479259	NaN	NaN	NaN	0.759084	3.479774	0.075044	0.209993	1.000000	1.000000	0.127456	0.455381	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=2 SV=1	B4DNJ6_HUMAN	B4DNJ6_HUMAN	Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=2 SV=1	99.800000	0.007510	39760.800000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46798.46798.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46798"	QGDTGDWIGTFLGH	QGDTGDWIGTFLGH	R	K	99.700000	54.800000	48.300000	54.800000		1502.680000	2.000000	0.000810	0.540000	58.000000	71.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=2 SV=1	B4DNJ6_HUMAN	B4DNJ6_HUMAN	Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=2 SV=1	99.800000	0.007510	39760.800000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46842.46842.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46842"	QGDTGDWIGTFLGH	NaN	R	K	99.700000	67.700000	46.400000	66.800000	Gln->pyro-Glu (-17)	1485.650000	2.000000	0.000450	0.300000	58.000000	71.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Alpha-actinin-4 OS=Homo sapiens GN=ACTN4 PE=1 SV=2	ACTN4_HUMAN	ACTN4_HUMAN	Alpha-actinin-4 OS=Homo sapiens GN=ACTN4 PE=1 SV=2	95.900000	0.001320	104839.200000	1.000000	1.000000	1.000000	Spectrum21880 scans:7305,	QGEAEFNR	NaN	R	I	98.900000	44.500000	41.900000	25.500000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	938.420000	2.000000	-0.000023	-0.024000	806.000000	813.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1 PE=1 SV=2	G3V3M6_HUMAN	G3V3M6_HUMAN	DNA-(apurinic or apyrimidinic site) lyase (Fragment) OS=Homo sapiens GN=APEX1 PE=4 SV=1	100.000000	0.005760	29172.700000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.43460.43460.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43460"	QGFGELLQAVPLADSFR	Q[+28]GFGELLQAVPLADSFR	R	H	99.700000	80.900000	57.300000	72.700000	Dimethyl (+28)	1874.990000	2.000000	0.001500	0.790000	238.000000	254.000000	0.463100	0.216000	0.466400	4.253700	0.828850	NaN	NaN	NaN	NaN	0.582003	0.313377	0.810989	4.948320	1.125467	NaN	NaN	NaN	NaN	2.765162	0.719422	0.425466	0.327118	1.000000	1.000000	0.127106	0.437303	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1 PE=1 SV=2	G3V3M6_HUMAN	G3V3M6_HUMAN	DNA-(apurinic or apyrimidinic site) lyase (Fragment) OS=Homo sapiens GN=APEX1 PE=4 SV=1	98.500000	0.005010	29172.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.50965.50965.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=50965"	QGFGELLQAVPLADSFR	NaN	R	H	99.500000	62.500000	56.300000	46.800000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1835.950000	2.000000	-0.006100	-3.300000	238.000000	254.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	DNA-(apurinic or apyrimidinic site) lyase OS=Homo sapiens GN=APEX1 PE=1 SV=2	G3V3M6_HUMAN	G3V3M6_HUMAN	DNA-(apurinic or apyrimidinic site) lyase (Fragment) OS=Homo sapiens GN=APEX1 PE=4 SV=1	98.500000	0.005010	29172.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.50939.50939.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=50939"	QGFGELLQAVPLADSFR	NaN	R	H	99.600000	61.500000	55.700000	45.400000	Gln->pyro-Glu (-17)	1829.930000	2.000000	-0.004400	-2.400000	238.000000	254.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3	sp|P52272|HNRPM_HUMAN	HNRPM_HUMAN	Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3	100.000000	0.003950	77499.300000	3.000000	3.000000	3.000000	Spectrum5783 scans:24574,	QGGGGGGGSVPGIER	NaN	K	M	99.700000	64.200000	45.600000	50.900000	Gln->pyro-Glu (-17)	1266.590000	2.000000	-0.001900	-1.500000	389.000000	403.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome subunit alpha type OS=Homo sapiens GN=PSMA6 PE=3 SV=1	G3V5Z7_HUMAN	G3V5Z7_HUMAN	Proteasome subunit alpha type OS=Homo sapiens GN=PSMA6 PE=3 SV=1	100.000000	0.003950	28129.500000	2.000000	2.000000	3.000000	Spectrum18000 scans:9494,	QGGLTSVAVR	Q[+28]GGLTSVAVR	N	G	98.800000	61.600000	48.600000	39.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1024.590000	2.000000	0.001100	1.100000	34.000000	43.000000	0.442900	0.582400	1.354233	NaN	NaN	NaN	NaN	NaN	NaN	0.556617	0.844956	2.354779	NaN	NaN	NaN	NaN	NaN	NaN	0.556617	0.844956	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit alpha type OS=Homo sapiens GN=PSMA6 PE=3 SV=1	G3V5Z7_HUMAN	G3V5Z7_HUMAN	Proteasome subunit alpha type OS=Homo sapiens GN=PSMA6 PE=3 SV=1	97.300000	0.002500	28129.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.17466.17466.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17466"	QGGLTSVAVR	NaN	N	G	99.300000	51.400000	51.600000	29.200000	Gln->pyro-Glu (-17)	969.520000	2.000000	-0.001200	-1.300000	34.000000	43.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform P of Kinesin light chain 1 OS=Homo sapiens GN=KLC1	sp|Q07866-7|KLC1_HUMAN	KLC1_HUMAN	Isoform P of Kinesin light chain 1 OS=Homo sapiens GN=KLC1	100.000000	0.008960	66274.900000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.26957.26957.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26957"	QGKFEAAETLEEAAMR	NaN	R	S	99.700000	70.600000	52.300000	64.600000	Gln->pyro-Glu (-17), Dimethyl (+28)	1790.850000	2.000000	-0.001800	-1.000000	477.000000	492.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone acetyltransferase type B catalytic subunit OS=Homo sapiens GN=HAT1 PE=1 SV=1	sp|O14929|HAT1_HUMAN	HAT1_HUMAN	Histone acetyltransferase type B catalytic subunit OS=Homo sapiens GN=HAT1 PE=1 SV=1	100.000000	0.007900	49496.200000	1.000000	3.000000	6.000000	Spectrum22982 scans:9526,	QGQGHGAQLLETVHR	NaN	F	Y	99.700000	45.200000	50.100000	34.800000	Gln->pyro-Glu (-17)	1612.810000	3.000000	0.000890	0.550000	248.000000	262.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone acetyltransferase type B catalytic subunit OS=Homo sapiens GN=HAT1 PE=1 SV=1	sp|O14929|HAT1_HUMAN	HAT1_HUMAN	Histone acetyltransferase type B catalytic subunit OS=Homo sapiens GN=HAT1 PE=1 SV=1	100.000000	0.007900	49496.200000	1.000000	3.000000	6.000000	Spectrum28890 scans:12005,	QGQGHGAQLLETVHR	NaN	F	Y	99.700000	62.200000	50.900000	44.600000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1618.830000	3.000000	-0.000009	-0.005400	248.000000	262.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone acetyltransferase type B catalytic subunit OS=Homo sapiens GN=HAT1 PE=1 SV=1	sp|O14929|HAT1_HUMAN	HAT1_HUMAN	Histone acetyltransferase type B catalytic subunit OS=Homo sapiens GN=HAT1 PE=1 SV=1	100.000000	0.007900	49496.200000	1.000000	3.000000	6.000000	Spectrum22983 scans:9527,	QGQGHGAQLLETVHR	NaN	F	Y	99.700000	63.300000	50.400000	38.200000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1622.820000	3.000000	-0.000099	-0.061000	248.000000	262.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	sp|P60660-2|MYL6_HUMAN	MYL6_HUMAN	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	100.000000	0.027500	16942.800000	2.000000	3.000000	11.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.24138.24138.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24138"	QGTYEDYVEGLR	Q[+28]GTYEDYVEGLR	D	V	99.700000	62.900000	49.900000	51.600000	Dimethyl (+28)	1456.680000	2.000000	-0.003400	-2.400000	83.000000	94.000000	1.179333	4.024700	2.708533	0.805950	0.381000	0.473000	NaN	NaN	NaN	1.482133	5.839104	4.709674	0.937560	0.517347	0.707078	NaN	NaN	NaN	1.209847	3.178226	0.140929	0.443742	0.143115	1.000000	0.126067	0.394094	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.030300	62047.800000	7.000000	12.000000	23.000000	Spectrum22275 scans:14051,	QGVDADINGLR	NaN	R	Q	99.100000	53.500000	46.900000	39.100000	Gln->pyro-Glu (-17)	1139.560000	2.000000	0.000270	0.230000	251.000000	261.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.030300	62047.800000	7.000000	12.000000	23.000000	Spectrum19498 scans:12854,	QGVDADINGLR	Q[+28]GVDADINGLR	R	Q	99.700000	75.600000	48.000000	59.700000		1156.580000	2.000000	-0.000640	-0.550000	251.000000	261.000000	0.661133	0.999367	1.127100	1.443150	0.649850	23.508400	NaN	NaN	NaN	0.830883	1.449898	1.959833	1.678813	0.882409	35.142238	NaN	NaN	NaN	1.254848	1.166154	0.207424	0.151948	1.000000	0.275331	0.125930	0.383002	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.002330	62047.800000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.30783.30783.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30783"	QGVDADINGLR	Q[+28]GVDADINGLR	R	Q	99.600000	59.000000	52.400000	35.400000	Dimethyl (+28)	1184.610000	2.000000	-0.001800	-1.500000	251.000000	261.000000	0.661133	0.999367	1.127100	1.443150	0.649850	23.508400	NaN	NaN	NaN	0.830883	1.449898	1.959833	1.678813	0.882409	35.142238	NaN	NaN	NaN	1.254848	1.166154	0.207424	0.151948	1.000000	0.275187	0.125113	0.382369	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.022400	82573.600000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis.30274.30274.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30274"	QHALAEGLTEEEYQAF	NaN	R	L	99.700000	98.900000	47.800000	89.600000	Gln->pyro-Glu (-17)	1817.810000	2.000000	-0.005500	-3.000000	77.000000	92.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.030100	82573.600000	6.000000	10.000000	13.000000	Nsco_Tails_biological_replicate_3_fraction6A.46614.46614.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46614"	QHALAEGLTEEEYQAFLV	NaN	R	Y	99.700000	85.000000	53.000000	81.000000	Gln->pyro-Glu (-17)	2029.960000	2.000000	-0.005200	-2.600000	77.000000	94.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Nucleobindin-2 (Fragment) OS=Homo sapiens GN=NUCB2 PE=4 SV=1	H0YEG8_HUMAN	H0YEG8_HUMAN	Nucleobindin-2 (Fragment) OS=Homo sapiens GN=NUCB2 PE=4 SV=1	99.500000	0.010800	23742.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.5947.5947.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=5947"	QHDQLEAQ	NaN	R	K	99.000000	51.500000	43.900000	32.600000	Gln->pyro-Glu (-17)	950.410000	2.000000	-0.000260	-0.270000	156.000000	163.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Homo sapiens GN=OXCT1 PE=1 SV=1	SCOT1_HUMAN	SCOT1_HUMAN	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Homo sapiens GN=OXCT1 PE=1 SV=1	100.000000	0.005270	56140.800000	3.000000	4.000000	4.000000	Spectrum72267 scans:48363,	QHEADADLINAGKETVTILPGASFF	NaN	R	S	99.700000	81.900000	54.600000	79.600000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32)	2658.340000	3.000000	-0.003700	-1.400000	356.000000	380.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Sorcin OS=Homo sapiens GN=SRI PE=4 SV=1	C9J0K6_HUMAN	C9J0K6_HUMAN	Sorcin OS=Homo sapiens GN=SRI PE=4 SV=1	100.000000	0.005760	17587.300000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.24009.24009.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24009"	QHFISFDTDR	NaN	R	S	99.000000	46.500000	46.700000	36.400000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1257.560000	2.000000	-0.000920	-0.730000	64.000000	73.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Aminopeptidase B OS=Homo sapiens GN=RNPEP PE=4 SV=1	A6NKB8_HUMAN	A6NKB8_HUMAN	Aminopeptidase B OS=Homo sapiens GN=RNPEP PE=4 SV=1	100.000000	0.006590	68152.300000	3.000000	5.000000	5.000000	Spectrum50194 scans:21781,	QHMDITGEENPLNKLR	NaN	R	V	99.300000	43.300000	50.900000	41.700000	Gln->pyro-Glu (-17), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1938.950000	3.000000	-0.004300	-2.200000	342.000000	357.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.065900	83149.600000	5.000000	13.000000	50.000000	Spectrum37769 scans:7427,	QHMENEMAH	NaN	R	Y	99.100000	38.700000	31.100000	37.100000	Gln->pyro-Glu (-17)	1108.400000	2.000000	-0.002000	-1.800000	431.000000	439.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.065900	83149.600000	5.000000	13.000000	50.000000	Spectrum23628 scans:1881,	QHMENEMAH	NaN	R	Y	99.400000	35.800000	27.400000	35.800000	Gln->pyro-Glu (-17), Oxidation (+16), Oxidation (+16)	1140.400000	2.000000	-0.000240	-0.210000	431.000000	439.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.103000	83149.600000	4.000000	9.000000	23.000000	Nsco_Tails_biological_replicate2_apoptosis.3311.3311.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3311"	QHMENEMAH	NaN	R	Y	99.700000	60.400000	33.100000	53.800000	Gln->pyro-Glu (-17), Oxidation (+16)	1124.410000	2.000000	0.003900	3.500000	431.000000	439.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 3 of Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2	sp|P34897-3|GLYM_HUMAN	GLYM_HUMAN	Isoform 3 of Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2	98.000000	0.007080	53438.500000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.7900.7900.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7900"	QHSNAAQTQTGEANR	NaN	A	G	99.700000	92.000000	47.600000	74.700000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1604.710000	2.000000	-0.002000	-1.300000	6.000000	20.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 3 of Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2	sp|P34897-3|GLYM_HUMAN	GLYM_HUMAN	Isoform 3 of Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2	98.000000	0.007080	53438.500000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.7876.7876.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7876"	QHSNAAQTQTGEANR	NaN	A	G	99.700000	96.700000	47.300000	88.300000	Gln->pyro-Glu (-17)	1594.710000	2.000000	-0.001300	-0.840000	6.000000	20.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2	sp|P34897-3|GLYM_HUMAN	GLYM_HUMAN	Isoform 3 of Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2	100.000000	0.006590	53438.500000	2.000000	4.000000	5.000000	Spectrum23883 scans:2438,	QHSNAAQTQTGEANR	NaN	A	G	99.700000	96.300000	45.300000	76.200000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1600.730000	2.000000	-0.000420	-0.260000	6.000000	20.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2	sp|P34897-3|GLYM_HUMAN	GLYM_HUMAN	Isoform 3 of Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2	100.000000	0.006590	53438.500000	2.000000	4.000000	5.000000	Spectrum23622 scans:1871,	QHSNAAQTQTGEANR	Q[+28]HSNAAQTQTGEANR	A	G	99.700000	76.300000	48.300000	57.300000	Dimethyl (+28), Label:13C(6) (+6)	1645.790000	3.000000	0.000290	0.180000	6.000000	20.000000	NaN	NaN	NaN	1.634050	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.900887	NaN	NaN	NaN	NaN	NaN	1.900887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7	sp|Q15435|PP1R7_HUMAN	PP1R7_HUMAN	Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7 PE=1 SV=1	95.700000	0.003950	41548.300000	1.000000	3.000000	3.000000	Spectrum31031 scans:19103,	QIDATFVR	NaN	R	-	99.000000	53.900000	47.100000	35.900000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	941.480000	2.000000	-0.000580	-0.620000	352.000000	359.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7	sp|Q15435|PP1R7_HUMAN	PP1R7_HUMAN	Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7 PE=1 SV=1	95.700000	0.003950	41548.300000	1.000000	3.000000	3.000000	Spectrum31033 scans:19112,	QIDATFVR	NaN	R	-	99.000000	56.200000	47.400000	37.700000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	937.500000	2.000000	-0.000540	-0.580000	352.000000	359.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7	sp|Q15435|PP1R7_HUMAN	PP1R7_HUMAN	Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7 PE=1 SV=1	95.700000	0.003950	41548.300000	1.000000	3.000000	3.000000	Spectrum31030 scans:19102,	QIDATFVR	NaN	R	-	99.000000	56.500000	47.000000	32.900000	Gln->pyro-Glu (-17)	931.480000	2.000000	0.000310	0.330000	352.000000	359.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 5 of Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10	sp|O75494-5|SRS10_HUMAN	SRS10_HUMAN	Isoform 5 of Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10	97.900000	0.004480	20100.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.25075.25075.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25075"	QIEIQFAQGDR	NaN	R	K	99.500000	58.300000	51.300000	44.300000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1296.630000	2.000000	0.001000	0.770000	80.000000	90.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 2 of RING finger protein 114 OS=Homo sapiens GN=RNF114	sp|Q9Y508|RN114_HUMAN	RN114_HUMAN	RING finger protein 114 OS=Homo sapiens GN=RNF114 PE=1 SV=1	98.000000	0.004720	25675.500000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.17283.17283.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17283"	QIESTETSCHGCR	NaN	R	K	99.700000	65.400000	38.700000	65.400000	Gln->pyro-Glu (-17), Carbamidomethyl (+57), Carbamidomethyl (+57)	1546.610000	2.000000	-0.001700	-1.100000	83.000000	95.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of RING finger protein 114 OS=Homo sapiens GN=RNF114	sp|Q9Y508|RN114_HUMAN	RN114_HUMAN	RING finger protein 114 OS=Homo sapiens GN=RNF114 PE=1 SV=1	97.700000	0.002330	25675.500000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.16338.16338.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16338"	QIESTETSCHGCR	NaN	R	K	99.700000	49.600000	39.100000	49.600000	Gln->pyro-Glu (-17), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1556.620000	2.000000	-0.002200	-1.400000	83.000000	95.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2	LA_HUMAN	LA_HUMAN	Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2	100.000000	0.010000	46821.000000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46823.46823.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46823"	QIEYYFGDFNLPR	NaN	H	D	99.700000	58.800000	50.600000	58.700000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1653.770000	2.000000	-0.000780	-0.470000	20.000000	32.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2	LA_HUMAN	LA_HUMAN	Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2	100.000000	0.010000	46821.000000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46821.46821.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46821"	QIEYYFGDFNLPR	NaN	H	D	99.700000	63.800000	50.100000	61.500000	Gln->pyro-Glu (-17)	1643.760000	2.000000	-0.002400	-1.500000	20.000000	32.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 3 of MOB-like protein phocein OS=Homo sapiens GN=MOB4	sp|Q9Y3A3|PHOCN_HUMAN	PHOCN_HUMAN	MOB-like protein phocein OS=Homo sapiens GN=MOB4 PE=1 SV=1	98.900000	0.002500	26014.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.36056.36056.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36056"	QIFDEYENETFLCHR	NaN	R	F	99.700000	68.900000	44.800000	64.400000	Gln->pyro-Glu (-17), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1992.850000	2.000000	-0.009800	-4.900000	176.000000	190.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2	PAPS1_HUMAN	PAPS1_HUMAN	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2	100.000000	0.002630	70815.200000	1.000000	1.000000	2.000000	Spectrum74076 scans:54122,	QIHEGASLPFFEVF	NaN	R	V	99.700000	77.500000	48.400000	65.800000	Gln->pyro-Glu (-17)	1602.770000	2.000000	-0.001800	-1.100000	144.000000	157.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2	sp|Q8TBC4|UBA3_HUMAN	UBA3_HUMAN	NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2	100.000000	0.003950	51835.400000	2.000000	3.000000	3.000000	Spectrum62807 scans:36733,	QIHVIDMDTIDVSNLNR	NaN	R	Q	99.700000	91.800000	51.700000	83.700000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1970.990000	2.000000	0.002500	1.300000	95.000000	111.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2	sp|Q8TBC4|UBA3_HUMAN	UBA3_HUMAN	NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2	99.900000	0.008960	51835.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.29877.29877.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29877"	QIHVIDMDTIDVSNLNR	NaN	R	Q	99.700000	74.500000	54.800000	67.500000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1974.970000	2.000000	-0.005600	-2.900000	95.000000	111.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2	sp|Q8TBC4|UBA3_HUMAN	UBA3_HUMAN	NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2	99.900000	0.008960	51835.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.29875.29875.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29875"	QIHVIDMDTIDVSNLNR	NaN	R	Q	99.700000	87.900000	54.700000	77.900000	Gln->pyro-Glu (-17)	1964.960000	2.000000	-0.003100	-1.600000	95.000000	111.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.034200	64268.600000	8.000000	18.000000	26.000000	Spectrum20651 scans:17343,	QIILEKEETEELKR	NaN	R	F	99.100000	36.800000	52.100000	24.800000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1810.060000	3.000000	-0.001600	-0.890000	276.000000	289.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.034200	64268.600000	8.000000	18.000000	26.000000	Spectrum19365 scans:12510,	QIILEKEETEELKR	Q[+28]IILEKEETEELKR	R	F	99.400000	33.500000	52.500000	28.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1867.090000	4.000000	-0.001600	-0.830000	276.000000	289.000000	16.827000	6.095867	2.101467	0.121450	0.426450	2.851250	NaN	NaN	NaN	21.147417	8.843989	3.654089	0.141283	0.579062	4.262277	NaN	NaN	NaN	10.644350	4.711525	0.491006	0.458377	1.000000	1.000000	0.121117	0.278045	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.034200	64268.600000	8.000000	18.000000	26.000000	Spectrum19368 scans:12515,	QIILEKEETEELKR	Q[+28]IILEKEETEELKR	R	F	99.600000	41.600000	51.200000	23.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1855.120000	3.000000	-0.001400	-0.760000	276.000000	289.000000	16.827000	6.095867	2.101467	0.121450	0.426450	2.851250	NaN	NaN	NaN	21.147417	8.843989	3.654089	0.141283	0.579062	4.262277	NaN	NaN	NaN	10.644350	4.711525	0.491006	0.458377	1.000000	0.493965	0.121054	0.277711	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=4 SV=1	ERC6L_HUMAN	ERC6L_HUMAN	DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1	96.100000	0.002500	141089.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37159.37159.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37159"	QILNIIER	NaN	R	L	99.000000	59.700000	52.400000	22.400000	Gln->pyro-Glu (-17)	980.570000	2.000000	-0.000170	-0.180000	487.000000	494.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit I OS=Homo sapiens GN=EIF3I PE=1 SV=1	EIF3I_HUMAN	EIF3I_HUMAN	Eukaryotic translation initiation factor 3 subunit I OS=Homo sapiens GN=EIF3I PE=1 SV=1	100.000000	0.007900	36484.000000	2.000000	4.000000	6.000000	Spectrum44095 scans:14781,	QINDIQLSR	NaN	R	D	98.700000	50.000000	49.300000	15.500000	Dimethyl (+28)	1113.610000	2.000000	-0.000740	-0.670000	190.000000	198.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit I OS=Homo sapiens GN=EIF3I PE=1 SV=1	EIF3I_HUMAN	EIF3I_HUMAN	Eukaryotic translation initiation factor 3 subunit I OS=Homo sapiens GN=EIF3I PE=1 SV=1	100.000000	0.007900	36484.000000	2.000000	4.000000	6.000000	Spectrum44069 scans:14751,	QINDIQLSR	NaN	R	D	99.300000	56.300000	49.500000	14.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1123.620000	2.000000	-0.000110	-0.099000	190.000000	198.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit I OS=Homo sapiens GN=EIF3I PE=1 SV=1	EIF3I_HUMAN	EIF3I_HUMAN	Eukaryotic translation initiation factor 3 subunit I OS=Homo sapiens GN=EIF3I PE=1 SV=1	100.000000	0.007900	36484.000000	2.000000	4.000000	6.000000	Spectrum20698 scans:17617,	QINDIQLSR	NaN	R	D	99.300000	56.800000	48.100000	15.900000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1078.560000	2.000000	0.000120	0.110000	190.000000	198.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1	SND1_HUMAN	SND1_HUMAN	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1	100.000000	0.018400	101980.500000	4.000000	9.000000	14.000000	Spectrum31198 scans:19758,	QINLSNIR	NaN	R	A	98.700000	48.700000	47.700000	27.100000	Gln->pyro-Glu (-17)	939.510000	2.000000	-0.000170	-0.180000	48.000000	55.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	HTSF1_HUMAN	HTSF1_HUMAN	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	100.000000	0.035800	85836.600000	5.000000	8.000000	8.000000	Nsco_Tails_biological_replicate2_apoptosis.25901.25901.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25901"	QITAQAWDGTTDYQVEETSR	NaN	R	E	99.700000	65.300000	48.500000	65.300000	Gln->pyro-Glu (-17)	2281.010000	2.000000	-0.008300	-3.600000	341.000000	360.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	sp|P32119|PRDX2_HUMAN	PRDX2_HUMAN	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	72.500000	0.000000	21874.400000	0.000000	0.000000	0.000000	Nsco_Tails_biological_replicate_3_fraction2A.16441.16441.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=16441"	QITVNDLPVGR	QITVNDLPVGR	R	S	99.200000	62.300000	54.200000	43.700000	Dimethyl (+28)	1238.700000	2.000000	-0.000860	-0.700000	140.000000	150.000000	6.405533	14.366033	1.714900	0.311300	0.135400	0.453600	NaN	NaN	NaN	8.050186	20.842490	2.981916	0.362135	0.183855	0.678078	NaN	NaN	NaN	4.206161	10.513172	0.471381	0.488297	0.574532	0.491270	0.120111	0.272157	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	sp|P32119|PRDX2_HUMAN	PRDX2_HUMAN	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	100.000000	0.013200	21874.400000	3.000000	6.000000	10.000000	Spectrum50237 scans:21829,	QITVNDLPVGR	QITVNDLPVGR	R	S	99.100000	54.300000	50.000000	36.800000	Dimethyl (+28), Label:13C(6) (+6)	1244.720000	2.000000	-0.000730	-0.590000	140.000000	150.000000	6.405533	14.366033	1.714900	0.311300	0.135400	0.453600	NaN	NaN	NaN	8.050186	20.842490	2.981916	0.362135	0.183855	0.678078	NaN	NaN	NaN	4.206161	10.513172	0.471381	0.488297	0.574330	0.491127	0.120048	0.271837	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	sp|P32119|PRDX2_HUMAN	PRDX2_HUMAN	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	100.000000	0.013200	21874.400000	3.000000	6.000000	10.000000	Spectrum31496 scans:21446,	QITVNDLPVGR	NaN	R	S	99.200000	56.400000	49.500000	40.600000	Gln->pyro-Glu (-17)	1193.640000	2.000000	-0.000014	-0.011000	140.000000	150.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	sp|P32119|PRDX2_HUMAN	PRDX2_HUMAN	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	100.000000	0.013200	21874.400000	3.000000	6.000000	10.000000	Spectrum23239 scans:17842,	QITVNDLPVGR	NaN	R	S	99.500000	62.300000	50.000000	47.900000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1199.660000	2.000000	0.000360	0.300000	140.000000	150.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	sp|P32119|PRDX2_HUMAN	PRDX2_HUMAN	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	100.000000	0.013200	21874.400000	3.000000	6.000000	10.000000	Spectrum20514 scans:16454,	QITVNDLPVGR	QITVNDLPVGR	R	S	99.700000	86.300000	50.200000	60.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1248.710000	2.000000	-0.000710	-0.570000	140.000000	150.000000	6.405533	14.366033	1.714900	0.311300	0.135400	0.453600	NaN	NaN	NaN	8.050186	20.842490	2.981916	0.362135	0.183855	0.678078	NaN	NaN	NaN	4.206161	10.513172	0.471381	0.488297	0.929371	1.000000	0.119614	0.265900	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	sp|P32119|PRDX2_HUMAN	PRDX2_HUMAN	Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5	97.600000	0.000000	21874.400000	0.000000	0.000000	0.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.28421.28421.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28421"	QITVNDLPVGR	NaN	R	S	98.700000	49.400000	53.500000	39.600000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1203.650000	2.000000	0.000130	0.110000	140.000000	150.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens GN=DHX37 PE=1 SV=1	DHX37_HUMAN	DHX37_HUMAN	Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens GN=DHX37 PE=1 SV=1	98.900000	0.002500	129529.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.22914.22914.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22914"	QIVTAGLGDHLAR	NaN	R	R	99.700000	65.700000	54.500000	51.100000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1342.730000	2.000000	0.002000	1.500000	927.000000	939.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	DDB1_HUMAN	DDB1_HUMAN	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	100.000000	0.006590	126952.200000	2.000000	4.000000	5.000000	Spectrum24206 scans:2916,	QKDSAATTDEER	NaN	C	Q	99.500000	55.100000	45.100000	37.600000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1378.630000	2.000000	-0.000620	-0.450000	978.000000	989.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	DDB1_HUMAN	DDB1_HUMAN	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	100.000000	0.006590	126952.200000	2.000000	4.000000	5.000000	Spectrum24198 scans:2906,	QKDSAATTDEER	NaN	C	Q	99.700000	71.400000	47.100000	56.900000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1370.660000	2.000000	-0.000690	-0.500000	978.000000	989.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2	sp|P12814|ACTN1_HUMAN	ACTN1_HUMAN	Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2	99.800000	0.008960	103043.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.29926.29926.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29926"	QKDYETATLSEIKAL	NaN	R	L	99.500000	60.900000	57.100000	55.500000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1763.950000	2.000000	-0.002300	-1.300000	419.000000	433.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2	sp|P12814|ACTN1_HUMAN	ACTN1_HUMAN	Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2	99.800000	0.008960	103043.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.29933.29933.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29933"	QKDYETATLSEIKAL	NaN	R	L	99.700000	70.400000	56.700000	65.700000	Gln->pyro-Glu (-17), Dimethyl (+28), Dimethyl (+28)	1747.930000	2.000000	0.000830	0.470000	419.000000	433.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6	sp|Q15084|PDIA6_HUMAN	PDIA6_HUMAN	Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1	100.000000	0.021100	48104.300000	3.000000	8.000000	16.000000	Spectrum27561 scans:8797,	QKGESPVDYDGGR	NaN	F	T	99.300000	53.500000	46.100000	33.000000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1435.670000	2.000000	-0.000560	-0.390000	244.000000	256.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Isoform 2 of Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6	sp|Q15084|PDIA6_HUMAN	PDIA6_HUMAN	Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1	100.000000	0.064600	48104.300000	2.000000	5.000000	6.000000	Nsco_Tails_biological_replicate_3_fraction5A.8808.8808.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8808"	QKGESPVDYDGGR	NaN	F	T	99.000000	50.700000	48.300000	42.600000	Gln->pyro-Glu (-17), Dimethyl (+28)	1417.640000	2.000000	-0.002900	-2.100000	244.000000	256.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	RS6_HUMAN	RS6_HUMAN	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	99.700000	0.039500	28663.700000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.13135.13135.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13135"	QKLIEVDDER	NaN	C	K	98.800000	57.500000	52.800000	47.000000	Gln->pyro-Glu (-17), Dimethyl (+28)	1254.640000	2.000000	-0.001100	-0.900000	13.000000	22.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	RS6_HUMAN	RS6_HUMAN	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	100.000000	0.006590	28663.700000	2.000000	4.000000	5.000000	Spectrum19584 scans:13129,	QKLIEVDDER	NaN	C	K	99.600000	65.900000	50.200000	42.500000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1264.690000	2.000000	0.000330	0.260000	13.000000	22.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	RS6_HUMAN	RS6_HUMAN	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	100.000000	0.006590	28663.700000	2.000000	4.000000	5.000000	Spectrum17701 scans:8804,	QKLIEVDDER	Q[+28]KLIEVDDER	C	K	99.700000	61.400000	50.600000	31.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1317.730000	3.000000	-0.000720	-0.550000	13.000000	22.000000	NaN	1.207033	4.680700	NaN	2.199850	0.996700	NaN	NaN	NaN	NaN	1.751185	8.138932	NaN	2.987100	1.489947	NaN	NaN	NaN	NaN	2.369143	NaN	0.162434	NaN	0.961854	NaN	0.260217	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	RS6_HUMAN	RS6_HUMAN	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	100.000000	0.006590	28663.700000	2.000000	4.000000	5.000000	Spectrum17712 scans:8822,	QKLIEVDDER	Q[+28]KLIEVDDER	C	K	99.700000	65.800000	50.400000	54.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1309.750000	3.000000	0.000710	0.540000	13.000000	22.000000	NaN	1.207033	4.680700	NaN	2.199850	0.996700	NaN	NaN	NaN	NaN	1.751185	8.138932	NaN	2.987100	1.489947	NaN	NaN	NaN	NaN	2.369143	NaN	0.162434	NaN	0.652369	NaN	0.257037	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	RS6_HUMAN	RS6_HUMAN	40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1	100.000000	0.008960	28663.700000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.14053.14053.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14053"	QKLIEVDDER	NaN	C	K	99.700000	64.000000	53.400000	44.400000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1272.670000	2.000000	-0.002800	-2.200000	13.000000	22.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	FPPS_HUMAN	FPPS_HUMAN	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	100.000000	0.027700	48258.700000	3.000000	12.000000	21.000000	Spectrum68635 scans:43370,	QKPGVGLDAINDANLLEACIYR	NaN	Y	L	99.700000	67.100000	54.900000	59.100000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Carbamidomethyl (+57), Label:13C(6) (+6)	2450.280000	3.000000	-0.009700	-3.900000	186.000000	207.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	FPPS_HUMAN	FPPS_HUMAN	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	100.000000	0.027700	48258.700000	3.000000	12.000000	21.000000	Spectrum64270 scans:38367,	QKPGVGLDAINDANLLEACIYR	Q[+28]KPGVGLDAINDANLLEAC[+57]IYR	Y	L	99.700000	61.800000	55.500000	48.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Carbamidomethyl (+57), Label:13C(6) (+6)	2495.340000	3.000000	-0.004300	-1.700000	186.000000	207.000000	1.273033	0.639267	0.413833	0.019050	0.184100	NaN	NaN	NaN	NaN	1.599891	0.927459	0.719585	0.022161	0.249983	NaN	NaN	NaN	NaN	0.811026	0.588721	0.491182	0.332392	1.000000	0.665550	0.116894	0.250632	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	FPPS_HUMAN	FPPS_HUMAN	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	100.000000	0.005010	48258.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40945.40945.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40945"	QKPGVGLDAINDANLLEACIYR	NaN	Y	L	99.500000	81.800000	58.600000	75.900000	Gln->pyro-Glu (-17), Dimethyl (+28), Carbamidomethyl (+57)	2440.240000	3.000000	-0.004200	-1.700000	186.000000	207.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	FPPS_HUMAN	FPPS_HUMAN	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	100.000000	0.005010	48258.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40938.40938.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40938"	QKPGVGLDAINDANLLEACIYR	NaN	Y	L	99.500000	83.300000	59.300000	79.100000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2458.270000	3.000000	0.003300	1.300000	186.000000	207.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.042100	52861.700000	8.000000	16.000000	32.000000	Spectrum43447 scans:14027,	QKTGQEIPVNVR	NaN	Y	F	99.500000	66.800000	50.700000	37.500000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1388.800000	2.000000	0.000570	0.410000	148.000000	159.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	ATP synthase subunit alpha, mitochondrial OS=Homo sapiens GN=ATP5A1 PE=1 SV=1	ATPA_HUMAN	ATPA_HUMAN	ATP synthase subunit alpha, mitochondrial OS=Homo sapiens GN=ATP5A1 PE=1 SV=1	100.000000	0.005760	59734.100000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.14278.14278.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14278"	QKTGTAEMSSILEER	NaN	L	I	99.700000	62.900000	52.400000	58.700000	Gln->pyro-Glu (-17), Dimethyl (+28), Oxidation (+16)	1705.820000	2.000000	-0.003300	-1.900000	44.000000	58.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	ATP synthase subunit alpha, mitochondrial OS=Homo sapiens GN=ATP5A1 PE=1 SV=1	ATPA_HUMAN	ATPA_HUMAN	ATP synthase subunit alpha, mitochondrial OS=Homo sapiens GN=ATP5A1 PE=1 SV=1	100.000000	0.004670	59734.100000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.44163.44163.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44163"	QKTGTAEMSSILEER	NaN	L	I	99.200000	61.900000	53.000000	40.200000	Gln->pyro-Glu (-17), Dimethyl (+28)	1689.820000	3.000000	-0.006300	-3.800000	44.000000	58.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	ATP synthase subunit alpha, mitochondrial OS=Homo sapiens GN=ATP5A1 PE=1 SV=1	ATPA_HUMAN	ATPA_HUMAN	ATP synthase subunit alpha, mitochondrial OS=Homo sapiens GN=ATP5A1 PE=1 SV=1	100.000000	0.008960	59734.100000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.21285.21285.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21285"	QKTGTAEMSSILEER	NaN	L	I	98.500000	67.200000	54.200000	55.300000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1707.850000	3.000000	0.001200	0.690000	44.000000	58.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	ATP synthase subunit alpha, mitochondrial OS=Homo sapiens GN=ATP5A1 PE=1 SV=1	ATPA_HUMAN	ATPA_HUMAN	ATP synthase subunit alpha, mitochondrial OS=Homo sapiens GN=ATP5A1 PE=1 SV=1	100.000000	0.008960	59734.100000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.12891.12891.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12891"	QKTGTAEMSSILEER	NaN	L	I	98.700000	57.700000	53.800000	50.500000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Oxidation (+16), Label:13C(6)15N(4) (+10)	1723.850000	2.000000	0.003500	2.100000	44.000000	58.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of Diablo homolog, mitochondrial OS=Homo sapiens GN=DIABLO	sp|Q9NR28-3|DBLOH_HUMAN	DBLOH_HUMAN	Isoform 3 of Diablo homolog, mitochondrial OS=Homo sapiens GN=DIABLO	98.800000	0.002630	22266.100000	1.000000	2.000000	2.000000	Spectrum23820 scans:2335,	QKTQEEGEER	NaN	R	A	99.200000	60.200000	45.900000	43.500000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1261.590000	2.000000	0.000960	0.760000	174.000000	183.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of Diablo homolog, mitochondrial OS=Homo sapiens GN=DIABLO	sp|Q9NR28-3|DBLOH_HUMAN	DBLOH_HUMAN	Isoform 3 of Diablo homolog, mitochondrial OS=Homo sapiens GN=DIABLO	98.800000	0.002630	22266.100000	1.000000	2.000000	2.000000	Spectrum23819 scans:2333,	QKTQEEGEER	NaN	R	A	99.700000	65.200000	47.500000	44.500000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1253.610000	2.000000	-0.000330	-0.260000	174.000000	183.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Isoform 3 of Diablo homolog, mitochondrial OS=Homo sapiens GN=DIABLO	sp|Q9NR28-3|DBLOH_HUMAN	DBLOH_HUMAN	Isoform 3 of Diablo homolog, mitochondrial OS=Homo sapiens GN=DIABLO	99.400000	0.032300	22266.100000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction5A.2337.2337.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2337"	QKTQEEGEER	NaN	R	A	99.700000	65.100000	47.600000	45.500000	Gln->pyro-Glu (-17), Dimethyl (+28)	1243.570000	2.000000	-0.001400	-1.100000	174.000000	183.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	CAN1_HUMAN	CAN1_HUMAN	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	100.000000	0.009220	81874.600000	3.000000	6.000000	7.000000	Spectrum53558 scans:25614,	QLAGEDMEISVKELR	NaN	R	T	99.300000	68.000000	52.100000	61.400000	Gln->pyro-Glu (-17), Oxidation (+16), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1753.920000	2.000000	0.001500	0.870000	553.000000	567.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	CAN1_HUMAN	CAN1_HUMAN	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	100.000000	0.017900	81874.600000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.26466.26466.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26466"	QLAGEDMEISVKELR	NaN	R	T	99.600000	64.100000	56.500000	53.600000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1737.920000	2.000000	-0.003700	-2.100000	553.000000	567.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	CAN1_HUMAN	CAN1_HUMAN	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	100.000000	0.017900	81874.600000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.26445.26445.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26445"	QLAGEDMEISVKELR	NaN	R	T	99.700000	68.000000	55.100000	55.700000	Gln->pyro-Glu (-17), Dimethyl (+28)	1727.870000	2.000000	-0.002500	-1.500000	553.000000	567.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	CAN1_HUMAN	CAN1_HUMAN	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	100.000000	0.017900	81874.600000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.20920.20920.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20920"	QLAGEDMEISVKELR	NaN	R	T	99.700000	74.700000	54.400000	65.300000	Gln->pyro-Glu (-17), Oxidation (+16), Dimethyl (+28)	1743.870000	2.000000	-0.006100	-3.500000	553.000000	567.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	CAN1_HUMAN	CAN1_HUMAN	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	100.000000	0.017900	81874.600000	1.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.26444.26444.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26444"	QLAGEDMEISVKELR	NaN	R	T	99.700000	81.200000	55.700000	66.200000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1745.900000	2.000000	-0.003500	-2.000000	553.000000	567.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	CAN1_HUMAN	CAN1_HUMAN	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	100.000000	0.011600	81874.600000	2.000000	4.000000	5.000000	Nsco_Tails_biological_replicate_3_fraction6A.25707.25707.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25707"	QLAGEDMEISVKELR	NaN	R	T	99.700000	69.400000	55.100000	55.600000	Gln->pyro-Glu (-17), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1761.890000	2.000000	-0.006100	-3.500000	553.000000	567.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1	sp|Q96S59-3|RANB9_HUMAN	RANB9_HUMAN	Isoform 3 of Ran-binding protein 9 OS=Homo sapiens GN=RANBP9	99.800000	0.002500	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.15128.15128.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15128"	QLCGGSQAAIER	NaN	R	M	99.700000	68.400000	48.800000	56.400000	Gln->pyro-Glu (-17), Carbamidomethyl (+57)	1271.590000	2.000000	-0.002300	-1.800000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Protein bicaudal D homolog 2 OS=Homo sapiens GN=BICD2	sp|Q8TD16|BICD2_HUMAN	BICD2_HUMAN	Protein bicaudal D homolog 2 OS=Homo sapiens GN=BICD2 PE=1 SV=1	100.000000	0.007510	93518.000000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37043.37043.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37043"	QLEEALETLKTER	NaN	R	E	99.700000	62.700000	55.500000	39.900000	Gln->pyro-Glu (-17), Dimethyl (+28)	1569.830000	2.000000	0.002000	1.300000	239.000000	251.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Protein bicaudal D homolog 2 OS=Homo sapiens GN=BICD2	sp|Q8TD16|BICD2_HUMAN	BICD2_HUMAN	Protein bicaudal D homolog 2 OS=Homo sapiens GN=BICD2 PE=1 SV=1	96.400000	0.004480	93518.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.31616.31616.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31616"	QLEEALETLKTER	NaN	R	E	99.000000	55.700000	55.800000	44.700000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1587.850000	2.000000	-0.002400	-1.500000	239.000000	251.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Kinesin-1 heavy chain OS=Homo sapiens GN=KIF5B PE=1 SV=1	KINH_HUMAN	KINH_HUMAN	Kinesin-1 heavy chain OS=Homo sapiens GN=KIF5B PE=1 SV=1	100.000000	0.005010	109668.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.51232.51232.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=51232"	QLEESVDALSEELVQLR	NaN	R	A	99.700000	76.500000	56.300000	51.800000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1949.990000	2.000000	0.003200	1.600000	659.000000	675.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Kinesin-1 heavy chain OS=Homo sapiens GN=KIF5B PE=1 SV=1	KINH_HUMAN	KINH_HUMAN	Kinesin-1 heavy chain OS=Homo sapiens GN=KIF5B PE=1 SV=1	100.000000	0.008960	109668.300000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.43509.43509.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43509"	QLEESVDALSEELVQLR	NaN	R	A	99.700000	99.600000	55.900000	86.300000	Gln->pyro-Glu (-17)	1939.970000	2.000000	-0.000340	-0.180000	659.000000	675.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	DYHC1_HUMAN	DYHC1_HUMAN	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	100.000000	0.004480	532387.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.34800.34800.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34800"	QLEKSLLQALNEVKGR	NaN	R	I	98.800000	84.400000	55.700000	70.800000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1878.160000	3.000000	0.009400	5.000000	3744.000000	3759.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 3 subunit L OS=Homo sapiens GN=EIF3EIP PE=4 SV=1	EIF3L_HUMAN	EIF3L_HUMAN	Eukaryotic translation initiation factor 3 subunit L OS=Homo sapiens GN=EIF3L PE=1 SV=1	99.300000	0.002500	66711.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.30500.30500.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30500"	QLEVYTSGGDPESVAGEYGR	NaN	R	H	99.700000	58.200000	49.600000	57.100000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	2105.950000	2.000000	0.003600	1.700000	243.000000	262.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Replication factor C subunit 1 OS=Homo sapiens GN=RFC1	sp|P35251|RFC1_HUMAN	RFC1_HUMAN	Replication factor C subunit 1 OS=Homo sapiens GN=RFC1 PE=1 SV=4	98.900000	0.005010	128242.400000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.14920.14920.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14920"	QLHEDEEFAR	NaN	R	T	99.700000	54.200000	45.700000	45.800000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1265.560000	2.000000	0.000950	0.750000	218.000000	227.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Replication factor C subunit 1 OS=Homo sapiens GN=RFC1	sp|P35251|RFC1_HUMAN	RFC1_HUMAN	Replication factor C subunit 1 OS=Homo sapiens GN=RFC1 PE=1 SV=4	99.900000	0.004480	128242.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.13547.13547.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13547"	QLHEDEEFAR	NaN	R	T	99.400000	49.500000	45.100000	37.400000	Gln->pyro-Glu (-17)	1255.550000	2.000000	0.000170	0.130000	218.000000	227.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.021100	69396.600000	5.000000	15.000000	16.000000	Spectrum66703 scans:41109,	QLLTLSSELSQAR	NaN	R	D	98.800000	57.300000	51.100000	35.200000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1433.780000	2.000000	0.000800	0.560000	530.000000	542.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.021100	69396.600000	5.000000	15.000000	16.000000	Spectrum66825 scans:41245,	QLLTLSSELSQAR	NaN	R	D	99.500000	60.800000	50.800000	46.200000	Gln->pyro-Glu (-17)	1427.760000	2.000000	-0.000790	-0.560000	530.000000	542.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.021100	69396.600000	5.000000	15.000000	16.000000	Spectrum56314 scans:28769,	QLLTLSSELSQAR	Q[+28]LLTLSSELSQAR	R	D	99.700000	84.500000	51.300000	52.500000	Dimethyl (+28), Label:13C(6) (+6)	1478.840000	2.000000	-0.000650	-0.440000	530.000000	542.000000	0.657667	0.412467	0.636633	0.184900	3.602000	18.697250	NaN	NaN	NaN	0.826526	0.598414	1.106996	0.215094	4.891031	27.950146	NaN	NaN	NaN	0.520810	2.744723	0.337922	0.422495	1.000000	1.000000	0.112846	0.215595	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	99.600000	0.007510	69396.600000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.39140.39140.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39140"	QLLTLSSELSQAR	NaN	R	D	99.700000	72.400000	54.900000	52.100000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1437.770000	2.000000	-0.004900	-3.400000	530.000000	542.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.013900	69396.600000	3.000000	5.000000	6.000000	Nsco_Tails_biological_replicate_3_fraction6A.28823.28823.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28823"	QLLTLSSELSQAR	Q[+28]LLTLSSELSQAR	R	D	99.700000	85.800000	55.700000	61.800000	Dimethyl (+28)	1472.820000	2.000000	-0.001700	-1.100000	530.000000	542.000000	0.657667	0.412467	0.636633	0.184900	3.602000	18.697250	NaN	NaN	NaN	0.826526	0.598414	1.106996	0.215094	4.891031	27.950146	NaN	NaN	NaN	0.520810	2.744723	0.337922	0.422495	1.000000	0.896124	0.112571	0.212427	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	sp|P26368|U2AF2_HUMAN	U2AF2_HUMAN	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4	100.000000	0.038200	53483.100000	5.000000	10.000000	29.000000	Spectrum23678 scans:2025,	QLNENKQER	NaN	R	D	98.600000	30.800000	49.700000	2.220000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1231.660000	3.000000	-0.000190	-0.160000	10.000000	18.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	sp|P26368|U2AF2_HUMAN	U2AF2_HUMAN	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4	100.000000	0.038200	53483.100000	5.000000	10.000000	29.000000	Spectrum33059 scans:2083,	QLNENKQER	NaN	R	D	98.800000	32.000000	50.200000	16.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1223.690000	3.000000	0.000310	0.250000	10.000000	18.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Early endosome antigen 1 OS=Homo sapiens GN=EEA1 PE=1 SV=2	EEA1_HUMAN	EEA1_HUMAN	Early endosome antigen 1 OS=Homo sapiens GN=EEA1 PE=1 SV=2	100.000000	0.005270	162450.100000	3.000000	4.000000	4.000000	Spectrum8363 scans:31227,	QLNTDLELR	Q[+28]LNTDLELR	R	A	99.300000	61.900000	49.300000	27.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1138.620000	2.000000	0.000690	0.600000	758.000000	766.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	LRC47_HUMAN	LRC47_HUMAN	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	100.000000	0.029000	63456.700000	4.000000	13.000000	22.000000	Spectrum42678 scans:13122,	QLQLEAEEQR	Q[+28]LQLEAEEQR	R	K	99.000000	52.700000	49.000000	39.100000	Dimethyl (+28)	1270.650000	2.000000	-0.001100	-0.900000	415.000000	424.000000	0.818600	0.155333	3.890400	0.543600	1.962500	1.340250	NaN	NaN	NaN	1.028780	0.225360	6.764737	0.632369	2.664811	2.003513	NaN	NaN	NaN	0.830574	1.445086	0.149132	0.446290	0.170282	0.506583	0.111165	0.206732	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	LRC47_HUMAN	LRC47_HUMAN	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	100.000000	0.029000	63456.700000	4.000000	13.000000	22.000000	Spectrum30238 scans:16142,	QLQLEAEEQR	NaN	R	K	99.100000	52.600000	48.000000	25.300000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1231.610000	2.000000	-0.000780	-0.640000	415.000000	424.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	LRC47_HUMAN	LRC47_HUMAN	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	100.000000	0.029000	63456.700000	4.000000	13.000000	22.000000	Spectrum30229 scans:16105,	QLQLEAEEQR	NaN	R	K	99.200000	53.800000	47.100000	24.900000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1235.600000	2.000000	-0.001100	-0.910000	415.000000	424.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	LRC47_HUMAN	LRC47_HUMAN	Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1	100.000000	0.029000	63456.700000	4.000000	13.000000	22.000000	Spectrum42679 scans:13123,	QLQLEAEEQR	Q[+28]LQLEAEEQR	R	K	99.700000	69.300000	49.800000	45.000000	Dimethyl (+28), Label:13C(6) (+6)	1276.670000	2.000000	0.000330	0.260000	415.000000	424.000000	0.818600	0.155333	3.890400	0.543600	1.962500	1.340250	NaN	NaN	NaN	1.028780	0.225360	6.764737	0.632369	2.664811	2.003513	NaN	NaN	NaN	0.830574	1.445086	0.149132	0.446290	0.497106	1.000000	0.110845	0.205265	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Coatomer subunit alpha OS=Homo sapiens GN=COPA	sp|P53621-2|COPA_HUMAN	COPA_HUMAN	Isoform 2 of Coatomer subunit alpha OS=Homo sapiens GN=COPA	99.800000	0.001320	139309.400000	1.000000	1.000000	1.000000	Spectrum67533 scans:42057,	QLTTVGKFEEAVEKFR	NaN	Y	S	99.200000	37.000000	53.200000	34.300000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1934.110000	3.000000	-0.000300	-0.160000	1024.000000	1039.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	SF3B1_HUMAN	SF3B1_HUMAN	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	100.000000	0.013400	145817.300000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.36327.36327.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36327"	QLVDTTVELANKVGAAEIISR	NaN	R	I	99.700000	78.500000	59.600000	71.400000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2247.270000	2.000000	-0.006700	-3.000000	832.000000	852.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	SF3B1_HUMAN	SF3B1_HUMAN	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	100.000000	0.013400	145817.300000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.36310.36310.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36310"	QLVDTTVELANKVGAAEIISR	NaN	R	I	99.700000	79.400000	59.600000	71.200000	Gln->pyro-Glu (-17), Dimethyl (+28)	2237.230000	2.000000	-0.001200	-0.540000	832.000000	852.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome activator complex subunit 1 OS=Homo sapiens GN=PSME1 PE=1 SV=1	PSME1_HUMAN	PSME1_HUMAN	Proteasome activator complex subunit 1 OS=Homo sapiens GN=PSME1 PE=1 SV=1	99.800000	0.013200	28705.800000	1.000000	3.000000	10.000000	Spectrum31073 scans:19325,	QLVHELDEAEYR	NaN	R	D	99.700000	64.800000	46.500000	46.200000	Gln->pyro-Glu (-17)	1483.690000	2.000000	-0.001800	-1.200000	199.000000	210.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome activator complex subunit 1 OS=Homo sapiens GN=PSME1 PE=1 SV=1	PSME1_HUMAN	PSME1_HUMAN	Proteasome activator complex subunit 1 OS=Homo sapiens GN=PSME1 PE=1 SV=1	99.800000	0.013200	28705.800000	1.000000	3.000000	10.000000	Spectrum31074 scans:19329,	QLVHELDEAEYR	NaN	R	D	99.700000	65.000000	47.800000	40.700000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1489.710000	2.000000	-0.000460	-0.310000	199.000000	210.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome activator complex subunit 1 OS=Homo sapiens GN=PSME1 PE=1 SV=1	PSME1_HUMAN	PSME1_HUMAN	Proteasome activator complex subunit 1 OS=Homo sapiens GN=PSME1 PE=1 SV=1	99.800000	0.013200	28705.800000	1.000000	3.000000	10.000000	Spectrum31050 scans:19237,	QLVHELDEAEYR	NaN	R	D	99.700000	83.700000	46.800000	65.000000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1493.700000	2.000000	-0.000940	-0.630000	199.000000	210.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB	sp|P47756|CAPZB_HUMAN	CAPZB_HUMAN	F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB PE=1 SV=4	100.000000	0.036900	31333.600000	3.000000	9.000000	28.000000	Spectrum27393 scans:8469,	QMEKDETVSDCSPH	NaN	R	I	99.700000	71.100000	39.200000	62.400000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Carbamidomethyl (+57)	1676.700000	2.000000	0.001400	0.840000	196.000000	209.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB	sp|P47756|CAPZB_HUMAN	CAPZB_HUMAN	F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB PE=1 SV=4	100.000000	0.020000	31333.600000	2.000000	5.000000	8.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.9532.9532.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9532"	QMEKDETVSDCSPH	NaN	R	I	99.700000	64.300000	41.200000	63.900000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57)	1680.690000	2.000000	0.000160	0.097000	196.000000	209.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB	sp|P47756|CAPZB_HUMAN	CAPZB_HUMAN	F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB PE=1 SV=4	100.000000	0.022400	31333.600000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis.9113.9113.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9113"	QMEKDETVSDCSPH	NaN	R	I	99.700000	81.500000	39.500000	80.900000	Gln->pyro-Glu (-17), Dimethyl (+28), Carbamidomethyl (+57)	1672.670000	2.000000	-0.001800	-1.100000	196.000000	209.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform 2 of F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB	sp|P47756|CAPZB_HUMAN	CAPZB_HUMAN	F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB PE=1 SV=4	100.000000	0.039300	31333.600000	2.000000	9.000000	17.000000	Nsco_Tails_biological_replicate_3_fraction6A.6408.6408.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6408"	QMEKDETVSDCSPH	NaN	R	I	99.100000	41.100000	38.000000	37.400000	Gln->pyro-Glu (-17), Oxidation (+16), Dimethyl (+28), Carbamidomethyl (+57)	1688.660000	2.000000	-0.002300	-1.300000	196.000000	209.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tripeptidyl peptidase II OS=Homo sapiens GN=TPP2 PE=2 SV=1	Q5VZU9_HUMAN	Q5VZU9_HUMAN	Tripeptidyl peptidase II OS=Homo sapiens GN=TPP2 PE=2 SV=1	100.000000	0.001320	139750.600000	1.000000	1.000000	1.000000	Spectrum5856 scans:24788,	QMGSGDAYPHQY	NaN	R	S	99.600000	50.100000	32.200000	39.300000	Gln->pyro-Glu (-17), Oxidation (+16)	1351.510000	2.000000	-0.002300	-1.700000	866.000000	877.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Proteasome activator complex subunit 2 OS=Homo sapiens GN=PSME2 PE=1 SV=4	PSME2_HUMAN	PSME2_HUMAN	Proteasome activator complex subunit 2 OS=Homo sapiens GN=PSME2 PE=1 SV=4	100.000000	0.017300	27384.200000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.47353.47353.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47353"	QNLFQEAEEFLYR	Q[+28]NLFQEAEEFLYR	R	F	99.700000	71.800000	52.900000	57.300000	Dimethyl (+28)	1713.830000	2.000000	-0.011000	-6.300000	22.000000	34.000000	0.699500	0.343300	0.490800	NaN	NaN	NaN	NaN	NaN	NaN	0.879100	0.498066	0.853417	NaN	NaN	NaN	NaN	NaN	NaN	0.879100	0.498066	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Proteasome activator complex subunit 2 OS=Homo sapiens GN=PSME2 PE=1 SV=4	PSME2_HUMAN	PSME2_HUMAN	Proteasome activator complex subunit 2 OS=Homo sapiens GN=PSME2 PE=1 SV=4	100.000000	0.017300	27384.200000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.53244.53244.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=53244"	QNLFQEAEEFLYR	NaN	R	F	99.700000	74.000000	50.700000	62.700000	Gln->pyro-Glu (-17)	1668.780000	2.000000	-0.001000	-0.620000	22.000000	34.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Proteasome activator complex subunit 2 OS=Homo sapiens GN=PSME2 PE=1 SV=4	PSME2_HUMAN	PSME2_HUMAN	Proteasome activator complex subunit 2 OS=Homo sapiens GN=PSME2 PE=1 SV=4	100.000000	0.017300	27384.200000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.47369.47369.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47369"	QNLFQEAEEFLYR	Q[+28]NLFQEAEEFLYR	R	F	99.700000	77.600000	53.600000	60.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1723.840000	2.000000	-0.002000	-1.100000	22.000000	34.000000	0.699500	0.343300	0.490800	NaN	NaN	NaN	NaN	NaN	NaN	0.879100	0.498066	0.853417	NaN	NaN	NaN	NaN	NaN	NaN	0.879100	0.498066	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome activator complex subunit 2 OS=Homo sapiens GN=PSME2 PE=1 SV=4	PSME2_HUMAN	PSME2_HUMAN	Proteasome activator complex subunit 2 OS=Homo sapiens GN=PSME2 PE=1 SV=4	100.000000	0.005010	27384.200000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.54175.54175.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=54175"	QNLFQEAEEFLYR	NaN	R	F	99.700000	74.200000	51.000000	62.600000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1678.790000	2.000000	-0.001200	-0.740000	22.000000	34.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7	sp|Q15435|PP1R7_HUMAN	PP1R7_HUMAN	Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7 PE=1 SV=1	100.000000	0.005760	41548.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.46586.46586.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46586"	QNLIKCIENLEELQSLR	NaN	R	E	99.700000	70.800000	58.400000	62.200000	Gln->pyro-Glu (-17), Dimethyl (+28), Carbamidomethyl (+57)	2110.110000	2.000000	0.001900	0.900000	107.000000	123.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7	sp|Q15435-2|PP1R7_HUMAN	PP1R7_HUMAN	Isoform 2 of Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7	100.000000	0.005760	36821.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.38218.38218.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38218"	QNLIKCIENLEELQSLR	Q[+28]NLIKC[+57]IENLEELQSLR	R	E	99.000000	77.200000	59.300000	56.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2173.190000	3.000000	0.000380	0.170000	64.000000	80.000000	26.897500	8.739700	0.324900	27.530000	NaN	NaN	NaN	NaN	NaN	33.803569	12.679708	0.564945	32.025593	NaN	NaN	NaN	NaN	NaN	32.914581	12.679708	0.000000	NaN	0.000000	NaN	0.107347	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1	sp|Q14980|NUMA1_HUMAN	NUMA1_HUMAN	Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1 PE=1 SV=2	100.000000	0.007900	238241.600000	6.000000	6.000000	6.000000	Spectrum11439 scans:40776,	QPEWLEEQQGR	NaN	R	Q	99.100000	51.900000	45.800000	42.200000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1387.640000	2.000000	-0.001800	-1.300000	948.000000	958.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum74512 scans:58646,	QPGCLLEQLVLY	NaN	R	D	98.600000	49.300000	49.500000	31.800000	Gln->pyro-Glu (-17), Carbamidomethyl (+57)	1414.720000	2.000000	-0.000720	-0.510000	424.000000	435.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2	IF2B_HUMAN	IF2B_HUMAN	Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2	100.000000	0.005010	38371.700000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.25917.25917.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25917"	QPKHLLAF	NaN	R	L	99.000000	51.700000	52.500000	34.800000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36)	971.570000	2.000000	-0.000280	-0.290000	232.000000	239.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Isoform 2 of DNA-binding protein SATB1 OS=Homo sapiens GN=SATB1	sp|Q01826-2|SATB1_HUMAN	SATB1_HUMAN	Isoform 2 of DNA-binding protein SATB1 OS=Homo sapiens GN=SATB1	98.200000	0.010800	89108.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.10181.10181.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10181"	QPTVASPAESDEENR	NaN	R	Q	99.200000	54.100000	48.100000	50.800000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1617.730000	2.000000	0.004000	2.500000	660.000000	674.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2	RFA1_HUMAN	RFA1_HUMAN	Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2	100.000000	0.015000	68121.000000	2.000000	4.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.17459.17459.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17459"	QPVLAIKGAR	NaN	R	V	99.600000	68.900000	51.700000	45.400000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1080.690000	2.000000	0.007900	7.300000	373.000000	382.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2	RFA1_HUMAN	RFA1_HUMAN	Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2	100.000000	0.015000	68121.000000	2.000000	4.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.17333.17333.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17333"	QPVLAIKGAR	NaN	R	V	99.700000	60.200000	52.200000	36.300000	Gln->pyro-Glu (-17), Dimethyl (+28)	1062.650000	2.000000	-0.000370	-0.350000	373.000000	382.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5	RL4_HUMAN	RL4_HUMAN	60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5	100.000000	0.009220	47681.100000	6.000000	7.000000	7.000000	Spectrum10838 scans:38870,	QPYAVSELAGH	NaN	R	Q	99.700000	64.800000	45.300000	52.000000	Gln->pyro-Glu (-17)	1153.540000	2.000000	-0.000290	-0.250000	50.000000	60.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5	RL4_HUMAN	RL4_HUMAN	60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5	100.000000	0.009220	47681.100000	6.000000	7.000000	7.000000	Spectrum11684 scans:41866,	QPYAVSELAGHQTSAESWGTGR	NaN	R	A	99.000000	31.900000	47.600000	29.300000	Gln->pyro-Glu (-17)	2314.060000	3.000000	-0.001500	-0.670000	50.000000	71.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5	RL4_HUMAN	RL4_HUMAN	60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5	100.000000	0.009220	47681.100000	6.000000	7.000000	7.000000	Spectrum11656 scans:41734,	QPYAVSELAGHQTSAESWGTGR	NaN	R	A	99.600000	41.400000	47.800000	38.700000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	2324.070000	3.000000	-0.004000	-1.700000	50.000000	71.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	SF3B1_HUMAN	SF3B1_HUMAN	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	100.000000	0.013200	145817.300000	5.000000	8.000000	10.000000	Spectrum19862 scans:13916,	QQAADLISR	NaN	R	T	99.200000	61.700000	48.000000	41.000000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	989.520000	2.000000	0.000900	0.910000	949.000000	957.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	SF3B1_HUMAN	SF3B1_HUMAN	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	100.000000	0.013200	145817.300000	5.000000	8.000000	10.000000	Spectrum7758 scans:29510,	QQAADLISR	NaN	R	T	99.600000	64.200000	47.300000	44.100000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	993.510000	2.000000	0.000380	0.380000	949.000000	957.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	SF3B1_HUMAN	SF3B1_HUMAN	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	100.000000	0.013200	145817.300000	5.000000	8.000000	10.000000	Spectrum19856 scans:13898,	QQAADLISR	NaN	R	T	99.700000	64.200000	47.000000	40.100000	Gln->pyro-Glu (-17)	983.500000	2.000000	-0.000510	-0.520000	949.000000	957.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.040300	19463.200000	5.000000	11.000000	14.000000	Nsco_Tails_biological_replicate1_apoptosis.44832.44832.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44832"	QQEAALVDMVNDGVEDLR	NaN	D	C	99.700000	88.900000	51.400000	87.600000	Gln->pyro-Glu (-17)	1983.920000	2.000000	-0.004300	-2.100000	84.000000	101.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.040300	19463.200000	5.000000	11.000000	14.000000	Nsco_Tails_biological_replicate1_apoptosis.44834.44834.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44834"	QQEAALVDMVNDGVEDLR	NaN	D	C	99.700000	93.000000	51.800000	91.400000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1993.930000	2.000000	-0.003500	-1.700000	84.000000	101.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.021200	19463.200000	4.000000	8.000000	9.000000	NSco_TAILS_20150124_Protein_complex_100Kda.63004.63004.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=63004"	QQEAALVDMVNDGVEDLR	NaN	D	C	99.600000	62.500000	51.200000	61.800000	Gln->pyro-Glu (-17), Oxidation (+16), Label:13C(6)15N(4) (+10)	2009.930000	2.000000	0.001200	0.620000	84.000000	101.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.021200	19463.200000	4.000000	8.000000	9.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64354.64354.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64354"	QQEAALVDMVNDGVEDLR	Q[+28]QEAALVDMVNDGVEDLR	D	C	99.700000	103.000000	54.300000	97.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2038.980000	2.000000	-0.004900	-2.400000	84.000000	101.000000	0.790333	0.343933	0.440233	12.411100	1.129600	0.652200	NaN	NaN	NaN	0.993255	0.498984	0.765490	14.437807	1.533845	0.974961	NaN	NaN	NaN	7.715531	1.016415	0.436974	0.299772	1.000000	1.000000	0.105295	0.187771	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.021200	19463.200000	4.000000	8.000000	9.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64342.64342.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64342"	QQEAALVDMVNDGVEDLR	Q[+28]QEAALVDMVNDGVEDLR	D	C	99.700000	109.000000	54.000000	98.200000	Dimethyl (+28)	2028.970000	2.000000	-0.005700	-2.800000	84.000000	101.000000	0.790333	0.343933	0.440233	12.411100	1.129600	0.652200	NaN	NaN	NaN	0.993255	0.498984	0.765490	14.437807	1.533845	0.974961	NaN	NaN	NaN	7.715531	1.016415	0.436974	0.299772	0.458097	0.513683	0.105104	0.187012	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.037300	19463.200000	7.000000	13.000000	16.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.49427.49427.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=49427"	QQEAALVDMVNDGVEDLR	Q[+28]QEAALVDMVNDGVEDLR	D	C	99.700000	84.100000	54.100000	83.000000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	2054.990000	2.000000	0.003400	1.700000	84.000000	101.000000	0.790333	0.343933	0.440233	12.411100	1.129600	0.652200	NaN	NaN	NaN	0.993255	0.498984	0.765490	14.437807	1.533845	0.974961	NaN	NaN	NaN	7.715531	1.016415	0.436974	0.299772	1.000000	0.512923	0.104581	0.186861	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Arginine and glutamate-rich protein 1 OS=Homo sapiens GN=ARGLU1 PE=1 SV=1	sp|Q9NWB6|ARGL1_HUMAN	ARGL1_HUMAN	Arginine and glutamate-rich protein 1 OS=Homo sapiens GN=ARGLU1 PE=1 SV=1	99.500000	0.005010	33199.200000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.30393.30393.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30393"	QQEIEEKLIEEETAR	NaN	R	R	99.700000	99.400000	55.200000	74.000000	Gln->pyro-Glu (-17), Dimethyl (+28)	1854.930000	2.000000	0.004100	2.200000	118.000000	132.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Protein FAM192A (Fragment) OS=Homo sapiens GN=FAM192A PE=4 SV=1	H3BMX9_HUMAN	H3BMX9_HUMAN	Protein FAM192A (Fragment) OS=Homo sapiens GN=FAM192A PE=4 SV=1	97.100000	0.002500	19800.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.11556.11556.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11556"	QQELIEKQR	NaN	R	R	99.300000	53.200000	53.800000	34.900000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1199.660000	2.000000	-0.001500	-1.300000	96.000000	104.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Protein FAM192A (Fragment) OS=Homo sapiens GN=FAM192A PE=4 SV=1	H3BMX9_HUMAN	H3BMX9_HUMAN	Protein FAM192A (Fragment) OS=Homo sapiens GN=FAM192A PE=4 SV=1	100.000000	0.006940	19800.500000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction6A.12288.12288.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12288"	QQELIEKQR	NaN	R	R	99.000000	55.900000	53.400000	29.400000	Gln->pyro-Glu (-17), Dimethyl (+28)	1181.640000	2.000000	-0.000650	-0.550000	96.000000	104.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Presequence protease, mitochondrial OS=Homo sapiens GN=PITRM1	sp|Q5JRX3|PREP_HUMAN	PREP_HUMAN	Presequence protease, mitochondrial OS=Homo sapiens GN=PITRM1 PE=1 SV=2	100.000000	0.002630	117439.400000	2.000000	2.000000	2.000000	Spectrum52486 scans:24432,	QQIYEKGLELR	NaN	R	S	99.500000	62.500000	50.800000	37.400000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1396.800000	2.000000	-0.000290	-0.210000	535.000000	545.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	SF3B1_HUMAN	SF3B1_HUMAN	Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3	100.000000	0.013200	145817.300000	5.000000	8.000000	10.000000	Spectrum15317 scans:4447,	QQLAEKAK	NaN	R	A	98.900000	52.200000	47.900000	39.100000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	969.580000	2.000000	0.000051	0.052000	170.000000	177.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.021100	69396.600000	5.000000	15.000000	16.000000	Spectrum32980 scans:1983,	QQLETEKKR	NaN	R	R	98.700000	31.700000	49.300000	9.730000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1268.770000	3.000000	0.000990	0.780000	321.000000	329.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.021100	69396.600000	5.000000	15.000000	16.000000	Spectrum32973 scans:1973,	QQLETEKKR	NaN	R	R	99.700000	37.900000	47.300000	13.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1256.800000	3.000000	-0.000023	-0.018000	321.000000	329.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2	TTL12_HUMAN	TTL12_HUMAN	Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2	100.000000	0.007900	74385.700000	3.000000	5.000000	6.000000	Spectrum31015 scans:18981,	QQLQQVPGLLHR	NaN	R	M	98.900000	53.500000	51.200000	35.600000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1408.780000	2.000000	-0.000220	-0.160000	133.000000	144.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2	LSM3_HUMAN	LSM3_HUMAN	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2	99.900000	0.002330	11827.500000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.50730.50730.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=50730"	QQQTTNTVEEPLDLIR	Q[+28]QQTTNTVEEPLDLIR	D	L	98.700000	56.200000	56.800000	48.200000	Dimethyl (+28)	1911.990000	2.000000	-0.005000	-2.600000	7.000000	22.000000	0.188433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.236815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.236815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein PRRC2C OS=Homo sapiens GN=PRRC2C PE=4 SV=1	sp|Q9Y520-7|PRC2C_HUMAN	PRC2C_HUMAN	Isoform 7 of Protein PRRC2C OS=Homo sapiens GN=PRRC2C	100.000000	0.001320	317060.700000	1.000000	1.000000	1.000000	Spectrum8077 scans:30428,	QQSEISAAVER	NaN	R	A	99.600000	61.200000	46.600000	50.200000	Gln->pyro-Glu (-17)	1199.580000	2.000000	-0.001600	-1.300000	453.000000	463.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA fragmentation factor subunit alpha OS=Homo sapiens GN=DFFA PE=1 SV=1	sp|O00273|DFFA_HUMAN	DFFA_HUMAN	DNA fragmentation factor subunit alpha OS=Homo sapiens GN=DFFA PE=1 SV=1	100.000000	0.007900	36504.500000	2.000000	4.000000	6.000000	Spectrum33388 scans:2457,	QSCATVQR	Q[+28]SC[+57]ATVQR	R	L	99.000000	53.500000	46.100000	22.900000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	986.480000	2.000000	-0.001100	-1.100000	163.000000	170.000000	0.182167	0.346800	1.255400	NaN	NaN	1.663500	NaN	NaN	NaN	0.228939	0.503143	2.182925	NaN	NaN	2.486733	NaN	NaN	NaN	0.228939	0.503143	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Interferon regulatory factor 2-binding protein-like OS=Homo sapiens GN=IRF2BPL PE=1 SV=1	I2BPL_HUMAN	I2BPL_HUMAN	Interferon regulatory factor 2-binding protein-like OS=Homo sapiens GN=IRF2BPL PE=1 SV=1	99.700000	0.002500	82640.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.29294.29294.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29294"	QSCYLCDLPR	NaN	R	M	99.000000	41.000000	43.600000	33.100000	Gln->pyro-Glu (-17), Carbamidomethyl (+57), Carbamidomethyl (+57)	1293.550000	2.000000	-0.000600	-0.470000	12.000000	21.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Interferon regulatory factor 2-binding protein 2 OS=Homo sapiens GN=IRF2BP2 PE=1 SV=2	sp|Q7Z5L9|I2BP2_HUMAN	I2BP2_HUMAN	Interferon regulatory factor 2-binding protein 2 OS=Homo sapiens GN=IRF2BP2 PE=1 SV=2	99.900000	0.007510	61006.200000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.29304.29304.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29304"	QSCYLCDLPR	NaN	R	M	99.000000	41.100000	44.100000	38.600000	Gln->pyro-Glu (-17), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1303.560000	2.000000	-0.000180	-0.140000	14.000000	23.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Branched-chain-amino-acid aminotransferase OS=Homo sapiens GN=BCAT2 PE=2 SV=1	B3KSI3_HUMAN	B3KSI3_HUMAN	Branched-chain-amino-acid aminotransferase OS=Homo sapiens GN=BCAT2 PE=2 SV=1	100.000000	0.002630	39897.800000	1.000000	2.000000	2.000000	Spectrum62543 scans:36430,	QSLLDMAQTWGEFR	Q[+28]SLLDM[+16]AQTWGEFR	R	V	99.700000	86.800000	49.000000	80.900000	Dimethyl (+28), Oxidation (+16), Label:13C(6) (+6)	1730.830000	2.000000	-0.005800	-3.400000	259.000000	272.000000	13.408033	8.058833	0.715867	3.673050	0.972300	0.309250	NaN	NaN	NaN	16.850614	11.691895	1.244769	4.272852	1.320253	0.462292	NaN	NaN	NaN	10.561733	6.506074	0.242930	0.416433	0.602981	1.000000	0.102769	0.181296	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Branched-chain-amino-acid aminotransferase OS=Homo sapiens GN=BCAT2 PE=2 SV=1	tr|M0QZP4|M0QZP4_HUMAN	M0QZP4_HUMAN	Branched-chain-amino-acid aminotransferase OS=Homo sapiens GN=BCAT2 PE=1 SV=1	100.000000	0.002630	0.000000	1.000000	2.000000	2.000000	Spectrum69116 scans:43954,	QSLLDMAQTWGEFR	NaN	R	V	99.700000	63.100000	46.600000	55.900000	Gln->pyro-Glu (-17), Oxidation (+16), Label:13C(6) (+6)	1685.780000	2.000000	-0.001500	-0.910000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Hypoxia-inducible factor 1-alpha inhibitor OS=Homo sapiens GN=HIF1AN PE=1 SV=2	HIF1N_HUMAN	HIF1N_HUMAN	Hypoxia-inducible factor 1-alpha inhibitor OS=Homo sapiens GN=HIF1AN PE=1 SV=2	100.000000	0.018400	40268.100000	2.000000	5.000000	14.000000	Spectrum45721 scans:16619,	QSQVDFDNPDYER	Q[+28]SQVDFDNPDYER	R	F	98.700000	69.800000	43.300000	56.300000	Dimethyl (+28), Label:13C(6) (+6)	1645.720000	2.000000	-0.007000	-4.200000	239.000000	251.000000	46.644467	NaN	NaN	NaN	NaN	3.824050	NaN	NaN	NaN	58.620669	NaN	NaN	NaN	NaN	5.716496	NaN	NaN	NaN	58.620669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Hypoxia-inducible factor 1-alpha inhibitor OS=Homo sapiens GN=HIF1AN PE=1 SV=2	HIF1N_HUMAN	HIF1N_HUMAN	Hypoxia-inducible factor 1-alpha inhibitor OS=Homo sapiens GN=HIF1AN PE=1 SV=2	100.000000	0.018400	40268.100000	2.000000	5.000000	14.000000	Spectrum45740 scans:16640,	QSQVDFDNPDYER	Q[+28]SQVDFDNPDYER	R	F	99.700000	59.000000	42.100000	55.600000	Dimethyl (+28)	1639.710000	2.000000	-0.001600	-1.000000	239.000000	251.000000	46.644467	NaN	NaN	NaN	NaN	3.824050	NaN	NaN	NaN	58.620669	NaN	NaN	NaN	NaN	5.716496	NaN	NaN	NaN	58.620669	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Transportin-1 OS=Homo sapiens GN=TNPO1	sp|Q92973-2|TNPO1_HUMAN	TNPO1_HUMAN	Isoform 2 of Transportin-1 OS=Homo sapiens GN=TNPO1	98.200000	0.004480	101295.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.37109.37109.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37109"	QSSFALLGDLTKACFQH	NaN	R	V	98.600000	53.200000	54.300000	50.500000	Gln->pyro-Glu (-17), Dimethyl (+28), Carbamidomethyl (+57)	1932.940000	2.000000	-0.000720	-0.370000	685.000000	701.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3	PSD11_HUMAN	PSD11_HUMAN	26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3	100.000000	0.017100	47448.300000	3.000000	5.000000	13.000000	Spectrum19616 scans:13221,	QTEALKCVAQASKNR	NaN	R	S	98.800000	35.000000	52.700000	22.400000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1767.950000	3.000000	-0.000780	-0.440000	283.000000	297.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.040800	82573.600000	11.000000	21.000000	31.000000	Spectrum71296 scans:46814,	QTEGFKNVSLGNVLAVAY	NaN	R	A	98.600000	64.400000	52.900000	53.000000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36)	1928.010000	2.000000	-0.005000	-2.600000	400.000000	417.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.015000	82573.600000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.44345.44345.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44345"	QTEGFKNVSLGNVLAVAY	NaN	R	A	98.900000	55.400000	57.200000	40.200000	Gln->pyro-Glu (-17), Dimethyl (+28)	1920.000000	2.000000	0.001600	0.820000	400.000000	417.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1	sp|P22102|PUR2_HUMAN	PUR2_HUMAN	Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1	100.000000	0.012500	107750.400000	2.000000	4.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.31268.31268.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31268"	QTLGDLLLTPTR	Q[+28]TLGDLLLTPTR	D	I	99.300000	54.700000	55.000000	31.000000	Dimethyl (+28)	1354.780000	2.000000	0.000130	0.093000	649.000000	660.000000	0.719167	0.166067	0.226300	0.642550	0.219350	0.340200	NaN	NaN	NaN	0.903816	0.240932	0.393497	0.747477	0.297848	0.508558	NaN	NaN	NaN	0.825647	0.269390	0.060094	0.067002	0.132735	0.097484	0.101730	0.177812	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1	sp|P22102|PUR2_HUMAN	PUR2_HUMAN	Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1	100.000000	0.013400	107750.400000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.26888.26888.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26888"	QTLGDLLLTPTR	Q[+28]TLGDLLLTPTR	D	I	99.700000	75.300000	55.100000	62.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1364.790000	2.000000	-0.005200	-3.800000	649.000000	660.000000	0.719167	0.166067	0.226300	0.642550	0.219350	0.340200	NaN	NaN	NaN	0.903816	0.240932	0.393497	0.747477	0.297848	0.508558	NaN	NaN	NaN	0.825647	0.269390	0.060094	0.067002	0.167222	0.097443	0.101418	0.176860	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 4 of Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform OS=Homo sapiens GN=PPP3CB	sp|P16298-4|PP2BB_HUMAN	PP2BB_HUMAN	Isoform 4 of Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform OS=Homo sapiens GN=PPP3CB	99.800000	0.005010	59106.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.35430.35430.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35430"	QTLQSATVEAIEAEKAIR	NaN	R	G	99.700000	84.100000	58.300000	80.700000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1986.070000	2.000000	-0.002100	-1.100000	452.000000	469.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1	SYQ_HUMAN	SYQ_HUMAN	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1	100.000000	0.008960	87781.900000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.22664.22664.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22664"	QTLSLMEQLR	Q[+28]TLSLMEQLR	D	G	99.700000	66.800000	53.800000	32.300000	Dimethyl (+28)	1245.680000	2.000000	0.000670	0.540000	216.000000	225.000000	1.141567	0.650667	0.711367	0.761400	0.210450	0.277250	NaN	NaN	NaN	1.434670	0.943998	1.236944	0.885735	0.285763	0.414455	NaN	NaN	NaN	1.160202	0.614881	0.147885	0.312868	0.557179	1.000000	0.100843	0.176590	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.007510	90567.200000	3.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.2961.2961.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2961"	QTNVSAAAQR	Q[+28]TNVSAAAQR	D	R	99.500000	53.000000	52.000000	32.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1082.570000	2.000000	0.000100	0.093000	581.000000	590.000000	0.767100	0.860533	1.014267	0.687850	0.392350	0.571600	NaN	NaN	NaN	0.964057	1.248477	1.763635	0.800174	0.532759	0.854473	NaN	NaN	NaN	0.882116	0.890618	0.058967	0.243231	0.521982	0.826651	0.100755	0.176456	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=2 SV=1	B4DNJ6_HUMAN	B4DNJ6_HUMAN	Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=2 SV=1	100.000000	0.004480	39760.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.9840.9840.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9840"	QTPLTCSGH	NaN	R	T	98.900000	44.300000	42.800000	41.200000	Gln->pyro-Glu (-17), Carbamidomethyl (+57)	982.420000	2.000000	0.000700	0.710000	5.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=4 SV=1	sp|Q8WWY3|PRP31_HUMAN	PRP31_HUMAN	U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2	97.900000	0.002500	55439.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.5316.5316.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=5316"	QTQVNEATKAR	NaN	R	I	99.500000	57.400000	53.600000	45.500000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1273.670000	2.000000	-0.002700	-2.100000	409.000000	419.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.026300	50123.200000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction2A.11118.11118.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11118"	QTVAVGVIK	Q[+28]TVAVGVIK	R	A	99.200000	58.700000	50.900000	43.600000	Dimethyl (+28), Dimethyl (+28)	969.620000	2.000000	-0.000079	-0.082000	431.000000	439.000000	29.464267	7.032400	0.238600	NaN	NaN	NaN	NaN	NaN	NaN	37.029366	10.202728	0.414884	NaN	NaN	NaN	NaN	NaN	NaN	37.029366	10.202728	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.031600	50123.200000	9.000000	17.000000	24.000000	Spectrum5745 scans:24470,	QTVAVGVIK	Q[+28]TVAVGVIK	R	A	98.900000	48.500000	44.200000	37.700000	Dimethyl (+28), Dimethyl:2H(4) (+32)	973.650000	2.000000	0.000270	0.280000	431.000000	439.000000	29.464267	7.032400	0.238600	NaN	NaN	NaN	NaN	NaN	NaN	37.029366	10.202728	0.414884	NaN	NaN	NaN	NaN	NaN	NaN	37.029366	10.202728	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.031600	50123.200000	9.000000	17.000000	24.000000	Spectrum43139 scans:13657,	QTVAVGVIK	Q[+28]TVAVGVIK	R	A	99.600000	58.500000	44.700000	36.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	977.640000	2.000000	0.000061	0.062000	431.000000	439.000000	29.464267	7.032400	0.238600	NaN	NaN	NaN	NaN	NaN	NaN	37.029366	10.202728	0.414884	NaN	NaN	NaN	NaN	NaN	NaN	37.029366	10.202728	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1	RAGP1_HUMAN	RAGP1_HUMAN	Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1	100.000000	0.002360	63525.300000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.57077.57077.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=57077"	QVEVINFGDCLVR	Q[+28]VEVINFGDC[+57]LVR	R	S	99.400000	60.500000	54.700000	39.300000	Dimethyl (+28), Carbamidomethyl (+57)	1575.810000	2.000000	-0.002600	-1.600000	265.000000	277.000000	0.767700	0.466767	0.625833	0.892250	0.342400	0.385400	NaN	NaN	NaN	0.964811	0.677193	1.088217	1.037953	0.464933	0.576127	NaN	NaN	NaN	1.001382	0.571063	0.023239	0.116979	0.095320	1.000000	0.099370	0.175120	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1	RAGP1_HUMAN	RAGP1_HUMAN	Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1	100.000000	0.005010	63525.300000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40400.40400.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40400"	QVEVINFGDCLVR	NaN	R	S	99.000000	51.500000	52.800000	42.900000	Gln->pyro-Glu (-17), Carbamidomethyl (+57)	1530.750000	2.000000	0.001000	0.660000	265.000000	277.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1	RAGP1_HUMAN	RAGP1_HUMAN	Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1	99.500000	0.002330	63525.300000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.55532.55532.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=55532"	QVEVINFGDCLVR	Q[+28]VEVINFGDC[+57]LVR	R	S	98.500000	60.300000	54.500000	42.100000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1585.810000	2.000000	-0.011000	-6.800000	265.000000	277.000000	0.767700	0.466767	0.625833	0.892250	0.342400	0.385400	NaN	NaN	NaN	0.964811	0.677193	1.088217	1.037953	0.464933	0.576127	NaN	NaN	NaN	1.001382	0.571063	0.023239	0.116979	0.086710	0.136077	0.099200	0.173154	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA replication complex GINS protein PSF1 OS=Homo sapiens GN=GINS1 PE=1 SV=1	PSF1_HUMAN	PSF1_HUMAN	DNA replication complex GINS protein PSF1 OS=Homo sapiens GN=GINS1 PE=1 SV=1	100.000000	0.002630	22971.300000	2.000000	2.000000	2.000000	Spectrum66553 scans:40938,	QVLEEMKALYEQNQSDVNEAKSGGR	NaN	R	S	98.600000	37.600000	55.400000	37.000000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2875.460000	3.000000	0.001900	0.650000	31.000000	55.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	PSB6_HUMAN	PSB6_HUMAN	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	100.000000	0.011900	25339.900000	5.000000	8.000000	9.000000	Spectrum20380 scans:15898,	QVLLGDQIPK	Q[+28]VLLGDQIPK	R	F	98.800000	50.400000	48.500000	28.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1173.720000	2.000000	-0.001000	-0.870000	221.000000	230.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	PSB6_HUMAN	PSB6_HUMAN	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	100.000000	0.025000	25339.900000	3.000000	5.000000	10.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.28780.28780.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28780"	QVLLGDQIPK	NaN	R	F	99.700000	60.800000	53.500000	42.500000	Gln->pyro-Glu (-17), Dimethyl (+28)	1120.650000	2.000000	0.001100	0.960000	221.000000	230.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	PSB6_HUMAN	PSB6_HUMAN	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	100.000000	0.025000	25339.900000	3.000000	5.000000	10.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46329.46329.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46329"	QVLLGDQIPKFAVATLPPA	NaN	R	-	99.500000	59.800000	58.300000	55.800000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36)	1996.150000	2.000000	-0.001000	-0.510000	221.000000	239.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	PSB6_HUMAN	PSB6_HUMAN	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	100.000000	0.017900	25339.900000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.39166.39166.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39166"	QVLLGDQIPKFAVATLPPA	NaN	R	-	99.700000	67.800000	58.400000	65.200000	Gln->pyro-Glu (-17), Dimethyl (+28)	1988.130000	2.000000	-0.000360	-0.180000	221.000000	239.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.107000	57471.900000	12.000000	23.000000	37.000000	Nsco_Tails_biological_replicate1_apoptosis.41882.41882.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41882"	QVLLSAAEAAEVILR	Q[+28]VLLSAAEAAEVILR	R	V	99.700000	75.600000	56.300000	55.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1619.950000	2.000000	0.000600	0.370000	502.000000	516.000000	0.521500	0.126700	0.243000	NaN	85.291650	NaN	NaN	NaN	NaN	0.655398	0.183819	0.422535	NaN	115.814583	NaN	NaN	NaN	NaN	0.655398	57.999201	NaN	0.488299	NaN	0.534679	1.000000	0.168733	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.107000	57471.900000	12.000000	23.000000	37.000000	Nsco_Tails_biological_replicate1_apoptosis.52599.52599.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=52599"	QVLLSAAEAAEVILR	NaN	R	V	99.700000	88.800000	56.400000	79.400000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1574.890000	2.000000	-0.001200	-0.790000	502.000000	516.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.107000	57471.900000	12.000000	23.000000	37.000000	Nsco_Tails_biological_replicate1_apoptosis.52882.52882.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=52882"	QVLLSAAEAAEVILR	NaN	R	V	99.700000	95.600000	56.300000	84.300000	Gln->pyro-Glu (-17)	1564.880000	2.000000	-0.002000	-1.300000	502.000000	516.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.038200	57471.900000	5.000000	15.000000	29.000000	Spectrum70194 scans:45324,	QVLLSAAEAAEVILR	Q[+28]VLLSAAEAAEVILR	R	V	99.200000	58.900000	51.200000	37.100000	Dimethyl (+28), Label:13C(6) (+6)	1615.960000	2.000000	-0.002300	-1.400000	502.000000	516.000000	0.521500	0.126700	0.243000	NaN	85.291650	NaN	NaN	NaN	NaN	0.655398	0.183819	0.422535	NaN	115.814583	NaN	NaN	NaN	NaN	0.655398	57.999201	NaN	0.488299	NaN	1.000000	1.000000	0.166667	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.123000	57471.900000	10.000000	25.000000	49.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.53677.53677.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=53677"	QVLLSAAEAAEVILR	NaN	R	V	99.700000	98.100000	56.200000	80.500000	Gln->pyro-Glu (-17), Label:13C(6) (+6)	1570.910000	2.000000	0.002800	1.800000	502.000000	516.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4	ACPH_HUMAN	ACPH_HUMAN	Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4	100.000000	0.002880	81206.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.28387.28387.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28387"	QVLLSEPEEAAALYR	Q[+28]VLLSEPEEAAALYR	R	G	99.700000	72.600000	56.500000	59.600000	Dimethyl (+28)	1715.910000	2.000000	0.002000	1.200000	4.000000	18.000000	0.539267	0.272200	0.501500	131.210100	21.857000	NaN	NaN	NaN	NaN	0.677726	0.394912	0.872022	152.636440	29.678865	NaN	NaN	NaN	NaN	76.657083	15.036889	0.456920	0.474872	1.000000	1.000000	0.098734	0.165002	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4	C9JIF9_HUMAN	C9JIF9_HUMAN	Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=4 SV=1	100.000000	0.007510	81655.500000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38211.38211.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38211"	QVLLSEPEEAAALYR	Q[+28]VLLSEPEEAAALYR	R	G	98.600000	59.000000	56.000000	47.500000		1687.890000	2.000000	0.007300	4.300000	4.000000	18.000000	0.539267	0.272200	0.501500	131.210100	21.857000	NaN	NaN	NaN	NaN	0.677726	0.394912	0.872022	152.636440	29.678865	NaN	NaN	NaN	NaN	76.657083	15.036889	0.456920	0.474872	1.000000	1.000000	0.098692	0.164885	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4	C9JIF9_HUMAN	C9JIF9_HUMAN	Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=4 SV=1	100.000000	0.007510	81655.500000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38167.38167.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38167"	QVLLSEPEEAAALYR	NaN	R	G	99.700000	89.900000	55.500000	80.600000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1680.870000	2.000000	0.005600	3.300000	4.000000	18.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4	C9JIF9_HUMAN	C9JIF9_HUMAN	Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=4 SV=1	100.000000	0.007510	81655.500000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38277.38277.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38277"	QVLLSEPEEAAALYR	NaN	R	G	99.700000	81.900000	55.000000	72.000000	Gln->pyro-Glu (-17)	1670.850000	2.000000	-0.001900	-1.200000	4.000000	18.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	sp|Q13263|TIF1B_HUMAN	TIF1B_HUMAN	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	100.000000	0.007900	88531.000000	4.000000	6.000000	6.000000	Spectrum13795 scans:2081,	QVSDVQKR	NaN	R	V	99.000000	37.300000	47.600000	17.100000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1024.630000	3.000000	-0.000380	-0.380000	283.000000	290.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	sp|Q13263|TIF1B_HUMAN	TIF1B_HUMAN	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	100.000000	0.007510	88531.000000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.4395.4395.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4395"	QVSDVQKR	NaN	R	V	98.600000	47.600000	52.200000	32.500000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	987.550000	2.000000	-0.001000	-1.000000	283.000000	290.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform A of Protein CutA OS=Homo sapiens GN=CUTA	sp|O60888|CUTA_HUMAN	CUTA_HUMAN	Protein CutA OS=Homo sapiens GN=CUTA PE=1 SV=2	100.000000	0.006590	19098.100000	2.000000	3.000000	5.000000	Spectrum59702 scans:32890,	QVTESVSDSITVLP	Q[+28]VTESVSDSITVLP	R	-	99.700000	73.800000	50.900000	57.600000	Dimethyl (+28)	1501.790000	2.000000	-0.002000	-1.400000	166.000000	179.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Isoform 2 of Cytosol aminopeptidase OS=Homo sapiens GN=LAP3	sp|P28838-2|AMPL_HUMAN	AMPL_HUMAN	Isoform 2 of Cytosol aminopeptidase OS=Homo sapiens GN=LAP3	99.800000	0.010800	52754.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.21257.21257.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21257"	QVVDCQLADVNNIGKYR	NaN	R	S	99.700000	79.000000	55.700000	75.500000	Gln->pyro-Glu (-17), Carbamidomethyl (+57), Dimethyl (+28)	2001.990000	2.000000	-0.000380	-0.190000	410.000000	426.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Cytosol aminopeptidase OS=Homo sapiens GN=LAP3	sp|P28838-2|AMPL_HUMAN	AMPL_HUMAN	Isoform 2 of Cytosol aminopeptidase OS=Homo sapiens GN=LAP3	98.900000	0.008960	52754.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.24234.24234.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24234"	QVVDCQLADVNNIGKYR	NaN	R	S	99.700000	68.800000	57.300000	68.800000	Gln->pyro-Glu (-17), Carbamidomethyl (+57), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2012.040000	2.000000	-0.000840	-0.420000	410.000000	426.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.027700	40405.300000	7.000000	17.000000	21.000000	Spectrum55330 scans:27625,	QVVNFGPGPAKLPH	NaN	R	S	98.700000	53.800000	51.400000	43.000000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32)	1474.820000	2.000000	-0.001800	-1.200000	6.000000	19.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.027700	40405.300000	7.000000	17.000000	21.000000	Spectrum48988 scans:20396,	QVVNFGPGPAKLPH	Q[+28]VVNFGPGPAKLPH	R	S	98.800000	34.000000	51.500000	22.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1523.870000	3.000000	-0.000340	-0.220000	6.000000	19.000000	3.151867	1.580533	0.977167	0.821050	0.547400	0.561150	NaN	NaN	NaN	3.961124	2.293065	1.699125	0.955126	0.743296	0.838852	NaN	NaN	NaN	2.458125	1.518180	0.349370	0.300444	0.428077	1.000000	0.097857	0.157263	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.027700	40405.300000	7.000000	17.000000	21.000000	Spectrum48978 scans:20384,	QVVNFGPGPAKLPH	Q[+28]VVNFGPGPAKLPH	R	S	99.700000	43.800000	51.300000	35.600000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1519.880000	3.000000	0.000520	0.340000	6.000000	19.000000	3.151867	1.580533	0.977167	0.821050	0.547400	0.561150	NaN	NaN	NaN	3.961124	2.293065	1.699125	0.955126	0.743296	0.838852	NaN	NaN	NaN	2.458125	1.518180	0.349370	0.300444	0.427926	0.554837	0.097774	0.156943	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	sp|P33993|MCM7_HUMAN	MCM7_HUMAN	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	100.000000	0.020200	81291.000000	4.000000	7.000000	7.000000	Nsco_Tails_biological_replicate1_apoptosis.26507.26507.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26507"	QVVQGLLSETYLEAHR	Q[+28]VVQGLLSETYLEAHR	R	I	99.100000	75.800000	57.500000	57.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1880.000000	3.000000	0.000900	0.480000	287.000000	302.000000	0.548167	0.169967	0.308333	0.886150	1.939800	15.374900	NaN	NaN	NaN	0.688911	0.246591	0.536139	1.030856	2.633987	22.983631	NaN	NaN	NaN	0.859884	1.440289	0.124951	0.440574	0.154684	0.813187	0.097733	0.156518	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	sp|P33993|MCM7_HUMAN	MCM7_HUMAN	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	100.000000	0.012500	81291.000000	2.000000	3.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37612.37612.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37612"	QVVQGLLSETYLEAHR	NaN	R	I	99.700000	85.200000	56.400000	60.900000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1834.950000	2.000000	0.000057	0.031000	287.000000	302.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	sp|P33993|MCM7_HUMAN	MCM7_HUMAN	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	100.000000	0.008960	81291.000000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.31925.31925.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31925"	QVVQGLLSETYLEAHR	NaN	R	I	99.700000	112.000000	56.200000	92.900000	Gln->pyro-Glu (-17)	1824.940000	2.000000	-0.000580	-0.320000	287.000000	302.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	RS8_HUMAN	RS8_HUMAN	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	100.000000	0.011500	24188.400000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.32956.32956.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32956"	QWYESHYALPLGR	NaN	R	K	99.700000	70.300000	51.600000	61.500000	Gln->pyro-Glu (-17)	1601.760000	2.000000	-0.000740	-0.460000	111.000000	123.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	RS8_HUMAN	RS8_HUMAN	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	100.000000	0.002500	24188.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33236.33236.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33236"	QWYESHYALPLGR	NaN	R	K	99.700000	71.300000	52.100000	62.200000	Gln->pyro-Glu (-17), Label:13C(6)15N(4) (+10)	1611.770000	2.000000	0.003100	1.900000	111.000000	123.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	sp|Q01081|U2AF1_HUMAN	U2AF1_HUMAN	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	100.000000	0.006590	27854.200000	2.000000	4.000000	5.000000	Spectrum28741 scans:11574,	QYEMGECTR	NaN	R	G	99.500000	42.200000	32.100000	29.200000	Gln->pyro-Glu (-17), Carbamidomethyl (+57)	1155.430000	2.000000	-0.000360	-0.310000	157.000000	165.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	sp|Q01081|U2AF1_HUMAN	U2AF1_HUMAN	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	100.000000	0.010000	27854.200000	2.000000	3.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.13684.13684.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13684"	QYEMGECTR	NaN	R	G	99.700000	38.900000	33.100000	36.200000	Gln->pyro-Glu (-17), Oxidation (+16), Carbamidomethyl (+57)	1171.430000	2.000000	-0.000220	-0.180000	157.000000	165.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	sp|Q01081|U2AF1_HUMAN	U2AF1_HUMAN	Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3	100.000000	0.013400	27854.200000	3.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.12516.12516.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12516"	QYEMGECTR	NaN	R	G	99.600000	41.400000	36.100000	34.700000	Gln->pyro-Glu (-17), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1165.440000	2.000000	-0.000660	-0.560000	157.000000	165.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Hsp90 co-chaperone Cdc37 OS=Homo sapiens GN=CDC37 PE=1 SV=1	CDC37_HUMAN	CDC37_HUMAN	Hsp90 co-chaperone Cdc37 OS=Homo sapiens GN=CDC37 PE=1 SV=1	99.900000	0.022500	44450.200000	1.000000	6.000000	9.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38760.38760.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38760"	QYMEGFNDELEAFKER	QYMEGFNDELEAFKER	R	V	99.700000	92.800000	48.200000	92.800000	Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2050.910000	2.000000	-0.037000	-18.000000	247.000000	262.000000	82.723200	35.795467	5.816000	71.853200	47.802900	0.806300	NaN	NaN	NaN	103.962800	51.932682	10.113024	83.586680	64.909906	1.205322	NaN	NaN	NaN	93.774740	58.421294	0.000000	0.000000	0.000000	0.000000	0.096510	0.149924	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Hsp90 co-chaperone Cdc37 OS=Homo sapiens GN=CDC37 PE=1 SV=1	CDC37_HUMAN	CDC37_HUMAN	Hsp90 co-chaperone Cdc37 OS=Homo sapiens GN=CDC37 PE=1 SV=1	99.900000	0.022500	44450.200000	1.000000	6.000000	9.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.38849.38849.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38849"	QYMEGFNDELEAFKER	NaN	R	V	99.700000	89.500000	48.800000	87.700000	Gln->pyro-Glu (-17), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2033.910000	2.000000	-0.011000	-5.200000	247.000000	262.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Hsp90 co-chaperone Cdc37 OS=Homo sapiens GN=CDC37 PE=1 SV=1	CDC37_HUMAN	CDC37_HUMAN	Hsp90 co-chaperone Cdc37 OS=Homo sapiens GN=CDC37 PE=1 SV=1	99.900000	0.022500	44450.200000	1.000000	6.000000	9.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.32546.32546.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32546"	QYMEGFNDELEAFKER	NaN	R	V	99.700000	91.300000	48.200000	82.900000	Gln->pyro-Glu (-17), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2049.910000	2.000000	-0.005600	-2.700000	247.000000	262.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Hsp90 co-chaperone Cdc37 OS=Homo sapiens GN=CDC37 PE=1 SV=1	CDC37_HUMAN	CDC37_HUMAN	Hsp90 co-chaperone Cdc37 OS=Homo sapiens GN=CDC37 PE=1 SV=1	99.900000	0.022500	44450.200000	1.000000	6.000000	9.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.32555.32555.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32555"	QYMEGFNDELEAFKER	NaN	R	V	99.700000	98.000000	46.600000	97.500000	Gln->pyro-Glu (-17), Oxidation (+16), Dimethyl (+28)	2031.880000	2.000000	-0.007800	-3.800000	247.000000	262.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Hsp90 co-chaperone Cdc37 OS=Homo sapiens GN=CDC37 PE=1 SV=1	CDC37_HUMAN	CDC37_HUMAN	Hsp90 co-chaperone Cdc37 OS=Homo sapiens GN=CDC37 PE=1 SV=1	99.900000	0.026900	44450.200000	1.000000	4.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.32952.32952.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32952"	QYMEGFNDELEAFKER	NaN	R	V	99.700000	93.100000	51.700000	86.300000	Gln->pyro-Glu (-17), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2025.940000	2.000000	-0.000790	-0.390000	247.000000	262.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Hsp90 co-chaperone Cdc37 OS=Homo sapiens GN=CDC37 PE=1 SV=1	CDC37_HUMAN	CDC37_HUMAN	Hsp90 co-chaperone Cdc37 OS=Homo sapiens GN=CDC37 PE=1 SV=1	99.900000	0.026900	44450.200000	1.000000	4.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.32945.32945.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32945"	QYMEGFNDELEAFKER	NaN	R	V	99.700000	93.200000	48.300000	90.400000	Gln->pyro-Glu (-17), Dimethyl (+28)	2015.890000	2.000000	-0.002300	-1.200000	247.000000	262.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nardilysin OS=Homo sapiens GN=NRD1 PE=3 SV=1	B1AKJ5_HUMAN	B1AKJ5_HUMAN	Nardilysin OS=Homo sapiens GN=NRD1 PE=3 SV=1	99.800000	0.001320	139399.500000	1.000000	1.000000	1.000000	Spectrum24677 scans:3714,	RLGADESEEEGR	NaN	A	R	99.300000	34.300000	46.400000	18.100000	Label:13C(6)15N(4) (+10), Dimethyl (+28), Label:13C(6)15N(4) (+10)	1394.660000	3.000000	0.001600	1.200000	80.000000	91.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.051400	60327.200000	5.000000	10.000000	39.000000	Spectrum21262 scans:2024,	RSTGETIR	NaN	D	S	99.000000	41.800000	48.000000	10.900000	Dimethyl (+28)	946.520000	3.000000	0.000170	0.180000	11.000000	18.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3	UBP14_HUMAN	UBP14_HUMAN	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3	100.000000	0.006590	56052.300000	4.000000	5.000000	5.000000	Spectrum43323 scans:13877,	RVEIMEEESEQ	R[+28]VEIMEEESEQ	R	-	99.000000	47.000000	43.500000	37.400000	Dimethyl (+28), Oxidation (+16)	1421.630000	2.000000	-0.001500	-1.000000	484.000000	494.000000	95.245767	12.852467	0.298600	NaN	5.121750	7.563350	NaN	NaN	NaN	119.700599	18.646581	0.519214	NaN	6.954647	11.306301	NaN	NaN	NaN	119.700599	12.800614	NaN	0.113142	NaN	0.263138	1.000000	0.144583	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3	UBP14_HUMAN	UBP14_HUMAN	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3	100.000000	0.006590	56052.300000	4.000000	5.000000	5.000000	Spectrum43334 scans:13890,	RVEIMEEESEQ	R[+28]VEIMEEESEQ	R	-	99.300000	53.300000	44.900000	32.300000	Label:13C(6)15N(4) (+10), Dimethyl (+28)	1415.650000	2.000000	-0.001900	-1.300000	484.000000	494.000000	95.245767	12.852467	0.298600	NaN	5.121750	7.563350	NaN	NaN	NaN	119.700599	18.646581	0.519214	NaN	6.954647	11.306301	NaN	NaN	NaN	119.700599	12.800614	NaN	0.113142	NaN	0.234109	1.000000	0.143507	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens GN=IQGAP1 PE=1 SV=1	IQGA1_HUMAN	IQGA1_HUMAN	Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens GN=IQGAP1 PE=1 SV=1	100.000000	0.009220	189240.600000	2.000000	3.000000	7.000000	Spectrum9701 scans:34967,	SAADEVDGLGVAR	S[+42]AADEVDGLGVAR	M	P	99.700000	77.600000	47.000000	61.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1310.630000	2.000000	-0.002100	-1.600000	2.000000	14.000000	0.394933	0.485067	1.204933	0.572050	0.050100	0.087200	1.339057	3.473014	3.416329	0.496334	0.703743	2.095172	0.665465	0.068029	0.130354	0.895601	1.479124	1.637114	0.685800	0.750299	0.027305	0.207307	0.052784	0.428697	0.006462	0.009724	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens GN=IQGAP1 PE=1 SV=1	IQGA1_HUMAN	IQGA1_HUMAN	Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens GN=IQGAP1 PE=1 SV=1	100.000000	0.009220	189240.600000	2.000000	3.000000	7.000000	Spectrum22283 scans:14312,	SAADEVDGLGVAR	S[+42]AADEVDGLGVAR	M	P	99.700000	85.500000	47.100000	70.000000	Acetyl (+42)	1300.630000	2.000000	-0.000089	-0.068000	2.000000	14.000000	0.394933	0.485067	1.204933	0.572050	0.050100	0.087200	1.339057	3.473014	3.416329	0.496334	0.703743	2.095172	0.665465	0.068029	0.130354	0.895601	1.479124	1.637114	0.685800	0.750299	0.027305	0.207307	0.052755	1.000000	0.006438	0.009694	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens GN=IQGAP1 PE=1 SV=1	IQGA1_HUMAN	IQGA1_HUMAN	Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens GN=IQGAP1 PE=1 SV=1	100.000000	0.017900	189240.600000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.17266.17266.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17266"	SAADEVDGLGVARPH	S[+42]AADEVDGLGVARPH	M	Y	99.300000	55.500000	52.100000	44.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1544.750000	2.000000	-0.000560	-0.360000	2.000000	16.000000	28.324833	1.201200	5.989500	0.658800	0.121550	0.186450	1.286700	NaN	NaN	35.597378	1.742722	10.414710	0.766381	0.165049	0.278720	0.860583	NaN	NaN	12.408114	0.953885	0.333130	0.439887	1.000000	1.000000	0.006433	0.140799	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens GN=IQGAP1 PE=1 SV=1	IQGA1_HUMAN	IQGA1_HUMAN	Ras GTPase-activating-like protein IQGAP1 OS=Homo sapiens GN=IQGAP1 PE=1 SV=1	100.000000	0.017900	189240.600000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.17267.17267.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17267"	SAADEVDGLGVARPH	S[+42]AADEVDGLGVARPH	M	Y	99.700000	74.500000	52.400000	67.900000	Acetyl (+42)	1534.750000	2.000000	0.007700	5.000000	2.000000	16.000000	28.324833	1.201200	5.989500	0.658800	0.121550	0.186450	1.286700	NaN	NaN	35.597378	1.742722	10.414710	0.766381	0.165049	0.278720	0.860583	NaN	NaN	12.408114	0.953885	0.333130	0.439887	1.000000	1.000000	0.006247	0.139357	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Interferon regulatory factor 2-binding protein-like OS=Homo sapiens GN=IRF2BPL PE=1 SV=1	I2BPL_HUMAN	I2BPL_HUMAN	Interferon regulatory factor 2-binding protein-like OS=Homo sapiens GN=IRF2BPL PE=1 SV=1	99.700000	0.002500	82640.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.4602.4602.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4602"	SAAQVSSSR	S[+42]AAQVSSSR	M	R	99.500000	60.400000	48.300000	38.000000	Acetyl (+42)	933.450000	2.000000	-0.006400	-6.800000	2.000000	10.000000	2.650700	3.060300	1.576033	0.947250	0.819450	0.873600	NaN	NaN	NaN	3.331281	4.439936	2.740451	1.101934	1.112703	1.305927	NaN	NaN	NaN	2.216607	2.776319	0.296629	0.343675	0.318966	0.832788	0.091581	0.139274	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	DDB1_HUMAN	DDB1_HUMAN	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	100.000000	0.017300	126952.200000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.2180.2180.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2180"	SAATTDEER	S[+28]AATTDEER	D	Q	99.700000	61.000000	46.700000	28.200000	Dimethyl (+28)	1006.460000	2.000000	0.000570	0.570000	981.000000	989.000000	0.559767	0.498567	0.818367	NaN	NaN	NaN	NaN	NaN	NaN	0.703490	0.723329	1.422999	NaN	NaN	NaN	NaN	NaN	NaN	0.703490	0.723329	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	DDB1_HUMAN	DDB1_HUMAN	DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1	99.900000	0.008960	126952.200000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.2132.2132.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2132"	SAATTDEER	S[+28]AATTDEER	D	Q	99.700000	71.700000	47.100000	34.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1016.470000	2.000000	0.000410	0.400000	981.000000	989.000000	0.559767	0.498567	0.818367	NaN	NaN	NaN	NaN	NaN	NaN	0.703490	0.723329	1.422999	NaN	NaN	NaN	NaN	NaN	NaN	0.703490	0.723329	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.034200	38850.300000	7.000000	16.000000	26.000000	Spectrum44725 scans:15508,	SADAAAGAPLPR	S[+42]ADAAAGAPLPR	M	L	99.700000	69.800000	48.100000	45.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1147.590000	2.000000	-0.000420	-0.360000	2.000000	13.000000	0.519200	0.348333	0.671833	0.670200	0.299700	0.458600	2.145029	0.280371	1.966329	0.652507	0.505368	1.168203	0.779642	0.406952	0.685552	1.434658	0.119408	0.942270	0.955602	0.343909	0.058699	0.097125	0.128914	0.202295	0.006229	0.009433	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.034200	38850.300000	7.000000	16.000000	26.000000	Spectrum44724 scans:15507,	SADAAAGAPLPR	S[+42]ADAAAGAPLPR	M	L	99.700000	72.500000	49.000000	60.200000	Acetyl (+42), Label:13C(6) (+6)	1143.600000	2.000000	-0.001200	-1.000000	2.000000	13.000000	0.519200	0.348333	0.671833	0.670200	0.299700	0.458600	2.145029	0.280371	1.966329	0.652507	0.505368	1.168203	0.779642	0.406952	0.685552	1.434658	0.119408	0.942270	0.955602	0.343909	0.058699	0.097125	0.128833	0.106485	0.006205	0.009394	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.039300	38850.300000	5.000000	11.000000	17.000000	Nsco_Tails_biological_replicate_3_fraction6A.15518.15518.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15518"	SADAAAGAPLPR	S[+42]ADAAAGAPLPR	M	L	99.700000	66.000000	51.400000	43.200000	Acetyl (+42)	1137.580000	2.000000	-0.000800	-0.700000	2.000000	13.000000	0.519200	0.348333	0.671833	0.670200	0.299700	0.458600	2.145029	0.280371	1.966329	0.652507	0.505368	1.168203	0.779642	0.406952	0.685552	1.434658	0.119408	0.942270	0.955602	0.343909	0.058699	0.097125	0.128751	0.121406	0.006200	0.009350	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.107000	57471.900000	12.000000	23.000000	37.000000	Nsco_Tails_biological_replicate1_apoptosis.17528.17528.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17528"	SADLVAQLR	S[+28]ADLVAQLR	D	A	98.700000	52.200000	52.500000	29.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1009.580000	2.000000	-0.000220	-0.220000	458.000000	466.000000	0.360733	0.490767	1.714733	0.605700	0.435300	0.717750	4.602357	42.871571	13.192971	0.453353	0.712013	2.981626	0.704610	0.591079	1.072950	3.078191	18.258595	6.322106	1.412051	6.520562	0.233353	0.350192	0.511519	0.437582	0.006198	0.009316	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.107000	57471.900000	12.000000	23.000000	37.000000	Nsco_Tails_biological_replicate1_apoptosis.17490.17490.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17490"	SADLVAQLR	S[+28]ADLVAQLR	D	A	99.700000	76.400000	52.600000	37.500000	Dimethyl (+28)	999.570000	2.000000	-0.000360	-0.360000	458.000000	466.000000	0.360733	0.490767	1.714733	0.605700	0.435300	0.717750	4.602357	42.871571	13.192971	0.453353	0.712013	2.981626	0.704610	0.591079	1.072950	3.078191	18.258595	6.322106	1.412051	6.520562	0.233353	0.350192	0.511196	0.437425	0.006130	0.009311	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2	P20D2_HUMAN	P20D2_HUMAN	Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2	100.000000	0.006590	47758.700000	3.000000	5.000000	5.000000	Spectrum38673 scans:8510,	SAECIDEAAER	S[+28]AEC[+57]IDEAAER	R	L	99.600000	57.800000	41.800000	40.100000	Dimethyl (+28), Carbamidomethyl (+57)	1277.550000	2.000000	-0.001400	-1.100000	27.000000	37.000000	0.490733	0.204000	0.415533	NaN	0.356750	4.267800	NaN	NaN	NaN	0.616732	0.295967	0.722541	NaN	0.484418	6.379849	NaN	NaN	NaN	0.616732	0.390193	NaN	0.150847	NaN	0.152873	1.000000	0.136319	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2	P20D2_HUMAN	P20D2_HUMAN	Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2	100.000000	0.006590	47758.700000	3.000000	5.000000	5.000000	Spectrum38674 scans:8511,	SAECIDEAAER	S[+28]AEC[+57]IDEAAER	R	L	99.700000	75.600000	43.600000	58.500000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1283.580000	2.000000	-0.000440	-0.340000	27.000000	37.000000	0.490733	0.204000	0.415533	NaN	0.356750	4.267800	NaN	NaN	NaN	0.616732	0.295967	0.722541	NaN	0.484418	6.379849	NaN	NaN	NaN	0.616732	0.390193	NaN	0.150847	NaN	0.152828	1.000000	0.136239	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proline synthase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1	PROSC_HUMAN	PROSC_HUMAN	Proline synthase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1	100.000000	0.007900	30325.800000	1.000000	3.000000	6.000000	Spectrum30862 scans:18396,	SAELGVGCALR	S[+42]AELGVGC[+57]ALR	M	A	99.500000	67.800000	48.600000	42.000000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6) (+6)	1179.600000	2.000000	0.001100	0.910000	8.000000	18.000000	0.605800	0.299300	0.493467	0.697050	0.405500	0.581750	NaN	NaN	NaN	0.761342	0.434230	0.858054	0.810877	0.550614	0.869646	NaN	NaN	NaN	0.786110	0.492422	0.020051	0.074886	0.190099	0.092409	0.089595	0.136159	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proline synthase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1	PROSC_HUMAN	PROSC_HUMAN	Proline synthase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1	98.900000	0.007510	30325.800000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.23786.23786.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23786"	SAELGVGCALR	S[+42]AELGVGC[+57]ALR	M	A	99.700000	77.200000	51.000000	56.800000	Acetyl (+42), Carbamidomethyl (+57)	1173.580000	2.000000	0.000110	0.090000	8.000000	18.000000	0.605800	0.299300	0.493467	0.697050	0.405500	0.581750	NaN	NaN	NaN	0.761342	0.434230	0.858054	0.810877	0.550614	0.869646	NaN	NaN	NaN	0.786110	0.492422	0.020051	0.074886	0.189581	0.092376	0.089491	0.136078	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Proline synthase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1	PROSC_HUMAN	PROSC_HUMAN	Proline synthase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1	98.900000	0.008960	30325.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.20630.20630.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20630"	SAELGVGCALR	S[+42]AELGVGC[+57]ALR	M	A	99.700000	67.600000	51.300000	27.800000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1183.590000	2.000000	0.000480	0.400000	8.000000	18.000000	0.605800	0.299300	0.493467	0.697050	0.405500	0.581750	NaN	NaN	NaN	0.761342	0.434230	0.858054	0.810877	0.550614	0.869646	NaN	NaN	NaN	0.786110	0.492422	0.020051	0.074886	0.029746	0.092343	0.088974	0.135441	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.013900	69396.600000	3.000000	5.000000	6.000000	Nsco_Tails_biological_replicate_3_fraction6A.9496.9496.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9496"	SAELSSEGIR	SAELSSEGIR	Y	D	98.800000	51.500000	50.400000	34.100000	Label:13C(6)15N(4) (+10)	1057.530000	2.000000	-0.002500	-2.400000	500.000000	509.000000	5.945733	57.411967	7.029667	0.788950	1.174350	1.142450	NaN	NaN	NaN	7.472330	83.294274	12.223381	0.917784	1.594609	1.707826	NaN	NaN	NaN	4.195057	42.444442	0.422197	0.399332	0.982579	0.492249	0.088026	0.135362	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of UPF0469 protein KIAA0907 OS=Homo sapiens GN=KIAA0907	sp|Q7Z7F0-3|K0907_HUMAN	K0907_HUMAN	Isoform 3 of UPF0469 protein KIAA0907 OS=Homo sapiens GN=KIAA0907	98.800000	0.002630	40264.800000	1.000000	2.000000	2.000000	Spectrum24012 scans:2635,	SAGSATHPGAGGR	S[+42]AGSATHPGAGGR	M	R	99.700000	90.300000	44.700000	78.100000	Acetyl (+42)	1166.540000	2.000000	-0.000730	-0.620000	2.000000	14.000000	0.511200	0.202767	0.380867	0.681050	0.254200	0.364900	NaN	NaN	NaN	0.642453	0.294177	0.662262	0.792264	0.345169	0.545482	NaN	NaN	NaN	0.717359	0.319673	0.066235	0.050667	0.075579	0.062434	0.087959	0.135204	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Isoform 3 of UPF0469 protein KIAA0907 OS=Homo sapiens GN=KIAA0907	sp|Q7Z7F0-3|K0907_HUMAN	K0907_HUMAN	Isoform 3 of UPF0469 protein KIAA0907 OS=Homo sapiens GN=KIAA0907	99.400000	0.021500	40264.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction5A.2640.2640.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2640"	SAGSATHPGAGGR	S[+42]AGSATHPGAGGR	M	R	99.700000	75.200000	48.600000	52.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1176.550000	2.000000	-0.001000	-0.850000	2.000000	14.000000	0.511200	0.202767	0.380867	0.681050	0.254200	0.364900	NaN	NaN	NaN	0.642453	0.294177	0.662262	0.792264	0.345169	0.545482	NaN	NaN	NaN	0.717359	0.319673	0.066235	0.050667	0.075554	0.062412	0.087826	0.133796	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1	CPSF3_HUMAN	CPSF3_HUMAN	Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1	98.800000	0.005270	77470.000000	1.000000	3.000000	4.000000	Spectrum59798 scans:33009,	SAIPAEESDQLLIR	S[+42]AIPAEESDQLLIR	M	P	99.600000	66.400000	51.500000	54.400000	Acetyl (+42), Label:13C(6) (+6)	1588.840000	2.000000	0.000220	0.140000	2.000000	15.000000	1.244767	0.326433	0.313333	0.519750	0.309300	0.594900	NaN	NaN	NaN	1.564367	0.473595	0.544833	0.604624	0.419988	0.889304	NaN	NaN	NaN	1.084495	0.446791	0.265207	0.038146	1.000000	0.044523	0.087726	0.133564	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1	CPSF3_HUMAN	CPSF3_HUMAN	Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1	98.800000	0.005270	77470.000000	1.000000	3.000000	4.000000	Spectrum31822 scans:23185,	SAIPAEESDQLLIR	S[+42]AIPAEESDQLLIR	M	P	99.700000	66.800000	51.200000	48.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1592.830000	2.000000	-0.000980	-0.610000	2.000000	15.000000	1.244767	0.326433	0.313333	0.519750	0.309300	0.594900	NaN	NaN	NaN	1.564367	0.473595	0.544833	0.604624	0.419988	0.889304	NaN	NaN	NaN	1.084495	0.446791	0.265207	0.038146	1.000000	0.065013	0.087164	0.132645	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1	CPSF3_HUMAN	CPSF3_HUMAN	Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1	98.800000	0.005270	77470.000000	1.000000	3.000000	4.000000	Spectrum31820 scans:23179,	SAIPAEESDQLLIR	S[+42]AIPAEESDQLLIR	M	P	99.700000	76.000000	51.100000	52.900000	Acetyl (+42)	1582.820000	2.000000	-0.003400	-2.200000	2.000000	15.000000	1.244767	0.326433	0.313333	0.519750	0.309300	0.594900	NaN	NaN	NaN	1.564367	0.473595	0.544833	0.604624	0.419988	0.889304	NaN	NaN	NaN	1.084495	0.446791	0.265207	0.038146	1.000000	0.055407	0.086642	0.132266	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	LIM domain kinase 2 OS=Homo sapiens GN=LIMK2 PE=1 SV=1	sp|P53671|LIMK2_HUMAN	LIMK2_HUMAN	LIM domain kinase 2 OS=Homo sapiens GN=LIMK2 PE=1 SV=1	98.900000	0.004480	72215.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.25199.25199.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25199"	SALAGEDVWR	S[+42]ALAGEDVWR	M	C	99.700000	61.500000	49.700000	36.600000	Acetyl (+42)	1144.550000	2.000000	0.000300	0.260000	2.000000	11.000000	9.940133	5.029467	0.743800	0.567900	0.140850	0.249000	NaN	NaN	NaN	12.492313	7.296837	1.293340	0.660637	0.191255	0.372225	NaN	NaN	NaN	6.576475	3.744046	0.458004	0.483318	1.000000	1.000000	0.086609	0.132040	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	RWD domain-containing protein 4 OS=Homo sapiens GN=RWDD4 PE=4 SV=1	D6RCM5_HUMAN	D6RCM5_HUMAN	RWD domain-containing protein 4 OS=Homo sapiens GN=RWDD4 PE=4 SV=1	98.800000	0.002630	5119.900000	1.000000	2.000000	2.000000	Spectrum30880 scans:18464,	SANEDQEMELEALR	S[+42]ANEDQEM[+16]ELEALR	M	S	99.700000	76.800000	42.200000	65.800000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10)	1701.740000	2.000000	-0.002100	-1.200000	2.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	RWD domain-containing protein 4 OS=Homo sapiens GN=RWDD4 PE=4 SV=1	D6RDH6_HUMAN	D6RDH6_HUMAN	RWD domain-containing protein 4 OS=Homo sapiens GN=RWDD4 PE=4 SV=1	98.800000	0.002630	6022.800000	1.000000	2.000000	2.000000	Spectrum30881 scans:18465,	SANEDQEMELEALR	S[+42]ANEDQEM[+16]ELEALR	M	S	99.700000	76.300000	42.200000	66.300000	Acetyl (+42), Oxidation (+16)	1691.730000	2.000000	0.000960	0.560000	2.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 2 of Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B	sp|O95487-2|SC24B_HUMAN	SC24B_HUMAN	Isoform 2 of Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B	98.000000	0.004720	133612.900000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.9821.9821.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9821"	SAPAGSSHPAASAR	S[+42]APAGSSHPAASAR	M	I	98.800000	54.200000	51.300000	49.900000	Acetyl (+42), Label:13C(6) (+6)	1313.640000	2.000000	-0.000900	-0.680000	2.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B	sp|O95487|SC24B_HUMAN	SC24B_HUMAN	Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B PE=1 SV=2	97.700000	0.004670	137401.400000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.9330.9330.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9330"	SAPAGSSHPAASAR	S[+42]APAGSSHPAASAR	M	I	99.500000	56.800000	50.100000	51.300000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1317.630000	2.000000	-0.004600	-3.500000	2.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B	sp|O95487|SC24B_HUMAN	SC24B_HUMAN	Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B PE=1 SV=2	97.700000	0.004670	137401.400000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.9313.9313.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9313"	SAPAGSSHPAASAR	S[+42]APAGSSHPAASAR	M	I	99.700000	91.000000	49.900000	82.400000	Acetyl (+42)	1307.620000	2.000000	-0.003200	-2.500000	2.000000	15.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Sortilin OS=Homo sapiens GN=SORT1 PE=1 SV=3	SORT_HUMAN	SORT_HUMAN	Sortilin OS=Homo sapiens GN=SORT1 PE=1 SV=3	98.900000	0.005010	92051.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.3213.3213.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3213"	SAPGEDEECGR	S[+28]APGEDEEC[+57]GR	R	V	99.700000	55.700000	39.400000	55.700000	Dimethyl (+28), Carbamidomethyl (+57)	1233.490000	2.000000	-0.000690	-0.560000	78.000000	88.000000	0.398800	0.244833	0.608233	0.545450	0.385250	0.705400	NaN	NaN	NaN	0.501194	0.355208	1.057613	0.634521	0.523118	1.054488	NaN	NaN	NaN	0.567857	0.439163	0.074395	0.120251	0.092994	0.328561	0.085743	0.130845	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Sortilin OS=Homo sapiens GN=SORT1 PE=1 SV=3	SORT_HUMAN	SORT_HUMAN	Sortilin OS=Homo sapiens GN=SORT1 PE=1 SV=3	98.900000	0.005010	92051.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.3218.3218.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3218"	SAPGEDEECGR	S[+28]APGEDEEC[+57]GR	R	V	99.700000	76.400000	40.600000	76.400000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1243.510000	2.000000	0.003800	3.100000	78.000000	88.000000	0.398800	0.244833	0.608233	0.545450	0.385250	0.705400	NaN	NaN	NaN	0.501194	0.355208	1.057613	0.634521	0.523118	1.054488	NaN	NaN	NaN	0.567857	0.439163	0.074395	0.120251	0.092961	0.328303	0.085552	0.129744	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Sortilin OS=Homo sapiens GN=SORT1 PE=1 SV=3	SORT_HUMAN	SORT_HUMAN	Sortilin OS=Homo sapiens GN=SORT1 PE=1 SV=3	99.400000	0.010800	92051.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.3184.3184.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3184"	SAPGEDEECGR	S[+28]APGEDEEC[+57]GR	R	V	99.700000	59.000000	41.800000	56.700000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1239.510000	2.000000	-0.000660	-0.540000	78.000000	88.000000	0.398800	0.244833	0.608233	0.545450	0.385250	0.705400	NaN	NaN	NaN	0.501194	0.355208	1.057613	0.634521	0.523118	1.054488	NaN	NaN	NaN	0.567857	0.439163	0.074395	0.120251	0.092927	0.204345	0.085489	0.129671	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Interferon-induced 35 kDa protein OS=Homo sapiens GN=IFI35	sp|P80217|IN35_HUMAN	IN35_HUMAN	Interferon-induced 35 kDa protein OS=Homo sapiens GN=IFI35 PE=1 SV=5	99.200000	0.001320	31528.200000	1.000000	1.000000	1.000000	Spectrum30560 scans:17258,	SAPLDAALH	S[+42]APLDAALH	M	A	98.500000	46.000000	46.300000	28.800000	Acetyl (+42)	935.470000	2.000000	-0.000470	-0.500000	2.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Interferon-induced 35 kDa protein OS=Homo sapiens GN=IFI35	sp|P80217|IN35_HUMAN	IN35_HUMAN	Interferon-induced 35 kDa protein OS=Homo sapiens GN=IFI35 PE=1 SV=5	97.400000	0.008640	31528.200000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.40960.40960.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40960"	SAPLDAALHALQEEQAR	S[+42]APLDAALHALQEEQAR	M	L	99.700000	68.900000	55.400000	60.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1870.940000	2.000000	-0.005200	-2.800000	2.000000	18.000000	0.643400	0.428200	0.665500	1.308950	0.569800	0.477000	NaN	NaN	NaN	0.808596	0.621240	1.157190	1.522699	0.773712	0.713058	NaN	NaN	NaN	1.165648	0.697476	0.189227	0.069309	1.000000	0.088877	0.085112	0.129092	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Interferon-induced 35 kDa protein OS=Homo sapiens GN=IFI35	sp|P80217|IN35_HUMAN	IN35_HUMAN	Interferon-induced 35 kDa protein OS=Homo sapiens GN=IFI35 PE=1 SV=5	98.900000	0.010000	31528.200000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.41849.41849.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41849"	SAPLDAALHALQEEQAR	S[+42]APLDAALHALQEEQAR	M	L	99.700000	75.300000	56.600000	64.300000	Acetyl (+42), Label:13C(6) (+6)	1866.970000	2.000000	0.012000	6.500000	2.000000	18.000000	0.643400	0.428200	0.665500	1.308950	0.569800	0.477000	NaN	NaN	NaN	0.808596	0.621240	1.157190	1.522699	0.773712	0.713058	NaN	NaN	NaN	1.165648	0.697476	0.189227	0.069309	1.000000	0.159484	0.084831	0.128447	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Interferon-induced 35 kDa protein OS=Homo sapiens GN=IFI35	sp|P80217|IN35_HUMAN	IN35_HUMAN	Interferon-induced 35 kDa protein OS=Homo sapiens GN=IFI35 PE=1 SV=5	98.900000	0.010000	31528.200000	1.000000	2.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.41753.41753.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41753"	SAPLDAALHALQEEQAR	S[+42]APLDAALHALQEEQAR	M	L	99.700000	106.000000	55.300000	84.200000	Acetyl (+42)	1860.930000	2.000000	-0.002000	-1.100000	2.000000	18.000000	0.643400	0.428200	0.665500	1.308950	0.569800	0.477000	NaN	NaN	NaN	0.808596	0.621240	1.157190	1.522699	0.773712	0.713058	NaN	NaN	NaN	1.165648	0.697476	0.189227	0.069309	1.000000	0.115238	0.084800	0.128163	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Protein bicaudal D homolog 2 OS=Homo sapiens GN=BICD2	sp|Q8TD16|BICD2_HUMAN	BICD2_HUMAN	Protein bicaudal D homolog 2 OS=Homo sapiens GN=BICD2 PE=1 SV=1	100.000000	0.007510	93518.000000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.11504.11504.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11504"	SAPSEEEEYAR	S[+42]APSEEEEYAR	M	L	99.700000	53.000000	42.700000	52.300000	Acetyl (+42)	1308.550000	2.000000	-0.000560	-0.430000	2.000000	12.000000	NaN	3.072000	NaN	3.445650	27.655650	4.524450	NaN	17.527743	4.157943	NaN	4.456911	NaN	4.008318	37.552651	6.763510	NaN	7.464899	1.992497	4.008318	16.491487	NaN	0.044859	NaN	0.074515	1.000000	0.008734	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Protein bicaudal D homolog 2 OS=Homo sapiens GN=BICD2	sp|Q8TD16|BICD2_HUMAN	BICD2_HUMAN	Protein bicaudal D homolog 2 OS=Homo sapiens GN=BICD2 PE=1 SV=1	100.000000	0.007510	93518.000000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.11563.11563.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11563"	SAPSEEEEYAR	S[+42]APSEEEEYAR	M	L	99.700000	62.500000	42.500000	47.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1318.550000	2.000000	-0.005400	-4.100000	2.000000	12.000000	NaN	3.072000	NaN	3.445650	27.655650	4.524450	NaN	17.527743	4.157943	NaN	4.456911	NaN	4.008318	37.552651	6.763510	NaN	7.464899	1.992497	4.008318	16.491487	NaN	0.044859	NaN	0.074443	1.000000	0.008724	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2	sp|Q9Y5A9|YTHD2_HUMAN	YTHD2_HUMAN	YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2	99.900000	0.001320	62316.400000	1.000000	1.000000	1.000000	Spectrum9079 scans:33212,	SASSLLEQR	S[+42]ASSLLEQR	M	P	99.400000	60.100000	47.300000	40.900000	Acetyl (+42)	1031.530000	2.000000	0.000630	0.610000	2.000000	10.000000	0.507533	0.080300	0.160633	0.983850	1.734450	1.440150	1.539257	0.666686	0.343214	0.637845	0.116501	0.279314	1.144511	2.355150	2.152851	1.029500	0.283935	0.164469	0.937285	0.918528	0.025742	0.330149	0.220553	0.798339	0.005733	0.008681	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1	tr|R4GN55|R4GN55_HUMAN	R4GN55_HUMAN	YTH domain-containing family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1	95.200000	0.004480	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.4784.4784.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4784"	SATSVDQR	S[+42]ATSVDQR	M	P	98.800000	45.500000	47.400000	26.100000	Acetyl (+42)	904.420000	2.000000	-0.000670	-0.740000	0.000000	0.000000	1559.546267	0.839900	0.583033	0.851700	0.179750	0.209800	NaN	NaN	NaN	1959.967660	1.218541	1.013795	0.990781	0.244076	0.313626	NaN	NaN	NaN	980.479220	0.731309	0.437130	0.374149	1.000000	0.409299	0.083786	0.127036	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Rap1 GTPase-GDP dissociation stimulator 1 (Fragment) OS=Homo sapiens GN=RAP1GDS1 PE=4 SV=1	D6REZ0_HUMAN	D6REZ0_HUMAN	Rap1 GTPase-GDP dissociation stimulator 1 (Fragment) OS=Homo sapiens GN=RAP1GDS1 PE=4 SV=1	100.000000	0.003950	16842.900000	1.000000	2.000000	3.000000	Spectrum54243 scans:26374,	SAVDQAGGAQIVIDHLR	S[+28]AVDQAGGAQIVIDHLR	R	S	99.700000	54.000000	52.700000	44.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1786.960000	3.000000	0.004100	2.300000	84.000000	100.000000	NaN	1.371367	0.121000	1.382050	0.527450	0.309600	NaN	NaN	NaN	NaN	1.989602	0.210398	1.607736	0.716206	0.462815	NaN	NaN	NaN	1.607736	1.352904	NaN	0.280027	NaN	0.306238	1.000000	0.126619	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Rap1 GTPase-GDP dissociation stimulator 1 (Fragment) OS=Homo sapiens GN=RAP1GDS1 PE=4 SV=1	D6REZ0_HUMAN	D6REZ0_HUMAN	Rap1 GTPase-GDP dissociation stimulator 1 (Fragment) OS=Homo sapiens GN=RAP1GDS1 PE=4 SV=1	100.000000	0.003950	16842.900000	1.000000	2.000000	3.000000	Spectrum54303 scans:26447,	SAVDQAGGAQIVIDHLR	S[+28]AVDQAGGAQIVIDHLR	R	S	99.700000	82.300000	52.800000	66.300000	Dimethyl (+28), Label:13C(6) (+6)	1782.970000	3.000000	0.001300	0.720000	84.000000	100.000000	NaN	1.371367	0.121000	1.382050	0.527450	0.309600	NaN	NaN	NaN	NaN	1.989602	0.210398	1.607736	0.716206	0.462815	NaN	NaN	NaN	1.607736	1.352904	NaN	0.280027	NaN	0.597597	1.000000	0.126550	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.027700	40405.300000	7.000000	17.000000	21.000000	Spectrum55985 scans:28379,	SAVPLNLIGLKAGR	S[+28]AVPLNLIGLKAGR	F	C	99.700000	47.000000	46.100000	40.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1473.960000	3.000000	-0.000380	-0.260000	84.000000	97.000000	NaN	NaN	NaN	0.057200	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.066541	NaN	NaN	NaN	NaN	NaN	0.066541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.027700	40405.300000	7.000000	17.000000	21.000000	Spectrum56090 scans:28502,	SAVPLNLIGLKAGR	S[+28]AVPLNLIGLKAGR	F	C	99.700000	55.300000	47.900000	43.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1481.940000	3.000000	0.001100	0.760000	84.000000	97.000000	NaN	NaN	NaN	0.057200	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.066541	NaN	NaN	NaN	NaN	NaN	0.066541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2	PAPS1_HUMAN	PAPS1_HUMAN	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2	100.000000	0.005010	70815.200000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.44299.44299.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44299"	SCDVNDCVQQVVELLQER	S[+28]C[+57]DVNDC[+57]VQQVVELLQER	D	D	99.600000	79.900000	53.500000	76.300000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2228.050000	3.000000	0.003900	1.800000	206.000000	223.000000	0.556700	0.235100	0.422300	0.783450	0.416150	0.527900	NaN	NaN	NaN	0.699636	0.341087	0.734307	0.911386	0.565076	0.789147	NaN	NaN	NaN	0.805511	0.453081	0.083199	0.154270	0.880189	0.354279	0.083635	0.125793	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2	PAPS1_HUMAN	PAPS1_HUMAN	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2	100.000000	0.017900	70815.200000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.37268.37268.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37268"	SCDVNDCVQQVVELLQER	S[+28]C[+57]DVNDC[+57]VQQVVELLQER	D	D	98.900000	70.500000	53.000000	65.900000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57)	2218.040000	3.000000	0.000350	0.160000	206.000000	223.000000	0.556700	0.235100	0.422300	0.783450	0.416150	0.527900	NaN	NaN	NaN	0.699636	0.341087	0.734307	0.911386	0.565076	0.789147	NaN	NaN	NaN	0.805511	0.453081	0.083199	0.154270	0.877514	0.645736	0.083604	0.125520	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glutathione S-transferase Mu 3 OS=Homo sapiens GN=GSTM3 PE=1 SV=3	GSTM3_HUMAN	GSTM3_HUMAN	Glutathione S-transferase Mu 3 OS=Homo sapiens GN=GSTM3 PE=1 SV=3	100.000000	0.003950	26543.100000	1.000000	3.000000	3.000000	Spectrum66490 scans:40868,	SCESSMVLGYWDIR	S[+42]C[+57]ESSMVLGYWDIR	M	G	99.000000	52.600000	41.100000	51.200000	Acetyl (+42), Carbamidomethyl (+57), Oxidation (+16)	1759.750000	2.000000	-0.004000	-2.300000	2.000000	15.000000	0.621200	0.163600	0.263400	NaN	NaN	NaN	NaN	NaN	NaN	0.780696	0.237354	0.458007	NaN	NaN	NaN	NaN	NaN	NaN	0.780696	0.237354	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glutathione S-transferase Mu 3 OS=Homo sapiens GN=GSTM3 PE=1 SV=3	GSTM3_HUMAN	GSTM3_HUMAN	Glutathione S-transferase Mu 3 OS=Homo sapiens GN=GSTM3 PE=1 SV=3	100.000000	0.003950	26543.100000	1.000000	3.000000	3.000000	Spectrum70417 scans:45614,	SCESSMVLGYWDIR	S[+42]C[+57]ESSMVLGYWDIR	M	G	99.700000	69.400000	42.900000	68.700000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1753.770000	2.000000	-0.002700	-1.600000	2.000000	15.000000	0.621200	0.163600	0.263400	NaN	NaN	NaN	NaN	NaN	NaN	0.780696	0.237354	0.458007	NaN	NaN	NaN	NaN	NaN	NaN	0.780696	0.237354	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Glutathione S-transferase Mu 3 OS=Homo sapiens GN=GSTM3 PE=1 SV=3	GSTM3_HUMAN	GSTM3_HUMAN	Glutathione S-transferase Mu 3 OS=Homo sapiens GN=GSTM3 PE=1 SV=3	99.800000	0.002310	26543.100000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.45659.45659.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=45659"	SCESSMVLGYWDIR	S[+42]C[+57]ESSMVLGYWDIR	M	G	99.700000	88.600000	45.000000	86.300000	Acetyl (+42), Carbamidomethyl (+57)	1743.750000	2.000000	-0.014000	-8.200000	2.000000	15.000000	0.621200	0.163600	0.263400	NaN	NaN	NaN	NaN	NaN	NaN	0.780696	0.237354	0.458007	NaN	NaN	NaN	NaN	NaN	NaN	0.780696	0.237354	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	DRG1_HUMAN	DRG1_HUMAN	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	100.000000	0.005270	40525.800000	2.000000	4.000000	4.000000	Spectrum12752 scans:47358,	SDATADDLIDVVEGNR	S[+28]DATADDLIDVVEGNR	R	V	99.700000	137.000000	48.200000	119.000000	Dimethyl (+28)	1716.810000	2.000000	-0.003200	-1.900000	223.000000	238.000000	1.880633	1.207467	0.451067	2.289500	6.458100	2.743250	NaN	NaN	NaN	2.363495	1.751814	0.784327	2.663371	8.769231	4.100830	NaN	NaN	NaN	2.513433	5.260522	0.037932	0.374476	0.092890	0.747229	0.083333	0.124775	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4	SYVC_HUMAN	SYVC_HUMAN	Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4	100.000000	0.007510	140459.500000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.10304.10304.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10304"	SDEEVVVATTR	S[+28]DEEVVVATTR	D	I	99.700000	62.500000	52.300000	40.900000	Dimethyl (+28)	1232.630000	2.000000	0.000580	0.470000	527.000000	537.000000	0.876733	0.461133	0.457433	1.435350	4.336350	1.931250	NaN	NaN	NaN	1.101839	0.669020	0.795398	1.669740	5.888180	2.886987	NaN	NaN	NaN	1.385789	3.278600	0.128663	0.427976	0.189500	0.541011	0.083303	0.124172	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	sp|P26368|U2AF2_HUMAN	U2AF2_HUMAN	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4	100.000000	0.038200	53483.100000	5.000000	10.000000	29.000000	Spectrum31091 scans:19392,	SDFDEFER	NaN	M	Q	99.000000	53.200000	39.000000	0.000000	Acetyl (+42), Label:13C(6) (+6)	1091.450000	2.000000	0.000780	0.720000	2.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	sp|P26368|U2AF2_HUMAN	U2AF2_HUMAN	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4	100.000000	0.038200	53483.100000	5.000000	10.000000	29.000000	Spectrum23190 scans:16006,	SDFDEFER	NaN	M	Q	99.000000	52.700000	35.700000	0.000000	Acetyl (+42)	1085.430000	2.000000	0.000530	0.490000	2.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2	sp|P26368|U2AF2_HUMAN	U2AF2_HUMAN	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4	100.000000	0.038200	53483.100000	5.000000	10.000000	29.000000	Spectrum31089 scans:19381,	SDFDEFER	NaN	M	Q	99.000000	71.300000	36.900000	0.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1095.440000	2.000000	0.000920	0.840000	2.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1	STABP_HUMAN	STABP_HUMAN	STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1	99.900000	0.005270	48059.300000	1.000000	2.000000	4.000000	Spectrum41943 scans:12292,	SDHGDVSLPPEDR	S[+42]DHGDVSLPPEDR	M	V	99.600000	71.400000	43.100000	59.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1474.650000	2.000000	-0.004500	-3.100000	2.000000	14.000000	1.345900	3.642767	14.963700	10.338500	0.477900	0.063200	NaN	NaN	16.723929	1.691467	5.284989	26.019301	12.026756	0.648924	0.094476	NaN	NaN	8.014150	6.859111	2.966956	0.393328	0.422221	0.779912	1.000000	0.083154	0.123708	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1	STABP_HUMAN	STABP_HUMAN	STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1	99.900000	0.005270	48059.300000	1.000000	2.000000	4.000000	Spectrum42429 scans:12835,	SDHGDVSLPPEDR	S[+42]DHGDVSLPPEDR	M	V	99.700000	83.900000	42.800000	71.200000	Acetyl (+42)	1464.640000	2.000000	-0.004100	-2.800000	2.000000	14.000000	1.345900	3.642767	14.963700	10.338500	0.477900	0.063200	NaN	NaN	16.723929	1.691467	5.284989	26.019301	12.026756	0.648924	0.094476	NaN	NaN	8.014150	6.859111	2.966956	0.393328	0.422221	0.779467	1.000000	0.083034	0.123642	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1	ZC3HF_HUMAN	ZC3HF_HUMAN	Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1	100.000000	0.009220	48585.700000	2.000000	7.000000	7.000000	Spectrum846 scans:11198,	SDLEEDNER	S[+28]DLEEDNER	R	E	99.500000	51.700000	40.800000	29.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1143.490000	2.000000	-0.000730	-0.640000	381.000000	389.000000	1.118967	0.167233	0.316767	0.922950	0.618250	0.692350	NaN	NaN	NaN	1.406267	0.242625	0.550803	1.073666	0.839500	1.034980	NaN	NaN	NaN	1.239966	0.541063	0.084875	0.320890	0.134482	1.000000	0.082885	0.122011	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1	ZC3HF_HUMAN	ZC3HF_HUMAN	Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1	96.300000	0.002330	48585.700000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.10930.10930.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10930"	SDLEEDNER	S[+28]DLEEDNER	R	E	99.500000	51.500000	43.800000	40.100000	Dimethyl (+28)	1133.480000	2.000000	-0.000800	-0.700000	381.000000	389.000000	1.118967	0.167233	0.316767	0.922950	0.618250	0.692350	NaN	NaN	NaN	1.406267	0.242625	0.550803	1.073666	0.839500	1.034980	NaN	NaN	NaN	1.239966	0.541063	0.084875	0.320890	1.000000	1.000000	0.082856	0.121819	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3	ACPM_HUMAN	ACPM_HUMAN	Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3	99.700000	0.003950	17399.900000	1.000000	2.000000	3.000000	Spectrum53139 scans:25153,	SDMPPLTLEGIQDR	S[+28]DMPPLTLEGIQDR	Y	V	99.200000	69.700000	49.200000	53.200000	Dimethyl (+28), Oxidation (+16)	1614.790000	2.000000	-0.005000	-3.100000	69.000000	82.000000	0.479833	3.331367	5.119467	0.781500	9.557250	12.325100	NaN	NaN	NaN	0.603033	4.833204	8.901872	0.909117	12.977459	18.424546	NaN	NaN	NaN	0.756075	8.905332	0.127145	0.213384	0.957032	1.000000	0.082737	0.121754	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3	ACPM_HUMAN	ACPM_HUMAN	Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3	99.700000	0.003950	17399.900000	1.000000	2.000000	3.000000	Spectrum30872 scans:18430,	SDMPPLTLEGIQDR	S[+28]DMPPLTLEGIQDR	Y	V	99.500000	65.900000	50.000000	53.000000	Dimethyl (+28), Oxidation (+16), Label:13C(6) (+6)	1620.810000	2.000000	-0.003500	-2.200000	69.000000	82.000000	0.479833	3.331367	5.119467	0.781500	9.557250	12.325100	NaN	NaN	NaN	0.603033	4.833204	8.901872	0.909117	12.977459	18.424546	NaN	NaN	NaN	0.756075	8.905332	0.127145	0.213384	0.954960	1.000000	0.082708	0.121562	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3	ACPM_HUMAN	ACPM_HUMAN	Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3	97.700000	0.009330	17399.900000	1.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.52117.52117.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=52117"	SDMPPLTLEGIQDR	S[+28]DMPPLTLEGIQDR	Y	V	99.700000	66.200000	53.700000	62.100000	Dimethyl (+28)	1598.790000	2.000000	-0.003300	-2.100000	69.000000	82.000000	0.479833	3.331367	5.119467	0.781500	9.557250	12.325100	NaN	NaN	NaN	0.603033	4.833204	8.901872	0.909117	12.977459	18.424546	NaN	NaN	NaN	0.756075	8.905332	0.127145	0.213384	0.952897	1.000000	0.082590	0.121499	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3	ACPM_HUMAN	ACPM_HUMAN	Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3	97.700000	0.009330	17399.900000	1.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.52064.52064.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=52064"	SDMPPLTLEGIQDR	S[+28]DMPPLTLEGIQDR	Y	V	99.700000	75.800000	54.000000	68.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1608.800000	2.000000	-0.001100	-0.660000	69.000000	82.000000	0.479833	3.331367	5.119467	0.781500	9.557250	12.325100	NaN	NaN	NaN	0.603033	4.833204	8.901872	0.909117	12.977459	18.424546	NaN	NaN	NaN	0.756075	8.905332	0.127145	0.213384	0.290640	0.254623	0.082560	0.121180	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3	ACPM_HUMAN	ACPM_HUMAN	Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3	97.700000	0.009330	17399.900000	1.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.44050.44050.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44050"	SDMPPLTLEGIQDR	S[+28]DMPPLTLEGIQDR	Y	V	99.700000	74.100000	53.300000	68.000000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1624.800000	2.000000	-0.003500	-2.200000	69.000000	82.000000	0.479833	3.331367	5.119467	0.781500	9.557250	12.325100	NaN	NaN	NaN	0.603033	4.833204	8.901872	0.909117	12.977459	18.424546	NaN	NaN	NaN	0.756075	8.905332	0.127145	0.213384	0.290449	0.254535	0.082531	0.120990	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 3 of Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2	sp|P34897-3|GLYM_HUMAN	GLYM_HUMAN	Isoform 3 of Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2	100.000000	0.012500	53438.500000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33673.33673.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33673"	SDPEMWELLQR	S[+28]DPEMWELLQR	D	E	99.400000	51.400000	51.200000	37.200000	Dimethyl (+28)	1430.690000	2.000000	-0.001100	-0.780000	31.000000	41.000000	0.475067	0.819833	1.821933	1.761750	0.838100	0.478300	NaN	NaN	NaN	0.597042	1.189428	3.168029	2.049440	1.138027	0.715001	NaN	NaN	NaN	1.323241	1.163728	0.319535	0.014057	1.000000	0.015998	0.082501	0.120864	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 3 of Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2	sp|P34897-3|GLYM_HUMAN	GLYM_HUMAN	Isoform 3 of Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2	100.000000	0.012500	53438.500000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33663.33663.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33663"	SDPEMWELLQR	S[+28]DPEMWELLQR	D	E	99.500000	59.000000	51.700000	50.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1440.700000	2.000000	0.004100	2.900000	31.000000	41.000000	0.475067	0.819833	1.821933	1.761750	0.838100	0.478300	NaN	NaN	NaN	0.597042	1.189428	3.168029	2.049440	1.138027	0.715001	NaN	NaN	NaN	1.323241	1.163728	0.319535	0.014057	1.000000	0.015993	0.082472	0.120675	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB	sp|P47756|CAPZB_HUMAN	CAPZB_HUMAN	F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB PE=1 SV=4	100.000000	0.036900	31333.600000	3.000000	9.000000	28.000000	Spectrum57468 scans:30196,	SDQQLDCALDLMR	S[+42]DQQLDC[+57]ALDLMR	M	R	99.700000	61.900000	42.900000	61.300000	Acetyl (+42), Carbamidomethyl (+57), Oxidation (+16), Label:13C(6)15N(4) (+10)	1631.710000	2.000000	-0.001200	-0.760000	2.000000	14.000000	0.482533	2.429633	7.819200	0.755100	0.505300	0.669950	NaN	5.278029	NaN	0.606426	3.524954	13.596244	0.878406	0.686129	1.001495	NaN	2.247862	NaN	0.742416	2.152982	0.115333	0.119800	0.144739	0.136252	0.082442	0.008206	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB	sp|P47756|CAPZB_HUMAN	CAPZB_HUMAN	F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB PE=1 SV=4	100.000000	0.036900	31333.600000	3.000000	9.000000	28.000000	Spectrum11720 scans:42040,	SDQQLDCALDLMR	S[+42]DQQLDC[+57]ALDLMR	M	R	99.700000	76.100000	43.800000	66.900000	Acetyl (+42), Carbamidomethyl (+57), Oxidation (+16), Label:13C(6) (+6)	1627.720000	2.000000	-0.004400	-2.700000	2.000000	14.000000	0.482533	2.429633	7.819200	0.755100	0.505300	0.669950	NaN	5.278029	NaN	0.606426	3.524954	13.596244	0.878406	0.686129	1.001495	NaN	2.247862	NaN	0.742416	2.152982	0.115333	0.119800	0.144687	0.207335	0.082413	0.008198	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB	sp|P47756|CAPZB_HUMAN	CAPZB_HUMAN	F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB PE=1 SV=4	100.000000	0.036900	31333.600000	3.000000	9.000000	28.000000	Spectrum11723 scans:42045,	SDQQLDCALDLMR	S[+42]DQQLDC[+57]ALDLMR	M	R	99.700000	69.300000	42.300000	59.900000	Acetyl (+42), Carbamidomethyl (+57), Oxidation (+16)	1621.700000	2.000000	-0.003000	-1.800000	2.000000	14.000000	0.482533	2.429633	7.819200	0.755100	0.505300	0.669950	NaN	5.278029	NaN	0.606426	3.524954	13.596244	0.878406	0.686129	1.001495	NaN	2.247862	NaN	0.742416	2.152982	0.115333	0.119800	0.139444	0.207231	0.082384	0.008160	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB	sp|P47756|CAPZB_HUMAN	CAPZB_HUMAN	F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB PE=1 SV=4	100.000000	0.036900	31333.600000	3.000000	9.000000	28.000000	Spectrum32235 scans:28020,	SDQQLDCALDLMR	S[+42]DQQLDC[+57]ALDLMR	M	R	99.700000	76.100000	43.800000	65.600000	Acetyl (+42), Carbamidomethyl (+57)	1605.710000	2.000000	0.000970	0.600000	2.000000	14.000000	0.482533	2.429633	7.819200	0.755100	0.505300	0.669950	NaN	5.278029	NaN	0.606426	3.524954	13.596244	0.878406	0.686129	1.001495	NaN	2.247862	NaN	0.742416	2.152982	0.115333	0.119800	0.139395	0.594715	0.082354	0.008143	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB	sp|P47756|CAPZB_HUMAN	CAPZB_HUMAN	F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB PE=1 SV=4	100.000000	0.036900	31333.600000	3.000000	9.000000	28.000000	Spectrum32232 scans:28001,	SDQQLDCALDLMR	S[+42]DQQLDC[+57]ALDLMR	M	R	99.700000	78.500000	45.200000	68.100000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6) (+6)	1611.730000	2.000000	-0.000860	-0.540000	2.000000	14.000000	0.482533	2.429633	7.819200	0.755100	0.505300	0.669950	NaN	5.278029	NaN	0.606426	3.524954	13.596244	0.878406	0.686129	1.001495	NaN	2.247862	NaN	0.742416	2.152982	0.115333	0.119800	0.136216	0.211018	0.082325	0.008114	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB	sp|P47756|CAPZB_HUMAN	CAPZB_HUMAN	F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB PE=1 SV=4	100.000000	0.022400	31333.600000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis.33118.33118.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33118"	SDQQLDCALDLMR	S[+42]DQQLDC[+57]ALDLMR	M	R	99.600000	55.900000	47.800000	50.200000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1615.720000	2.000000	-0.000620	-0.380000	2.000000	14.000000	0.482533	2.429633	7.819200	0.755100	0.505300	0.669950	NaN	5.278029	NaN	0.606426	3.524954	13.596244	0.878406	0.686129	1.001495	NaN	2.247862	NaN	0.742416	2.152982	0.115333	0.119800	0.136170	0.210911	0.082296	0.008109	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribosomal L1 domain-containing protein 1 (Fragment) OS=Homo sapiens GN=RSL1D1 PE=4 SV=1	I3L3U9_HUMAN	I3L3U9_HUMAN	Ribosomal L1 domain-containing protein 1 (Fragment) OS=Homo sapiens GN=RSL1D1 PE=4 SV=1	100.000000	0.002630	33883.800000	2.000000	2.000000	2.000000	Spectrum12510 scans:45892,	SDSEDICLF	NaN	R	T	99.000000	42.900000	39.500000	18.900000	Dimethyl (+28), Carbamidomethyl (+57)	1112.470000	2.000000	-0.000150	-0.130000	90.000000	98.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1	sp|P62136|PP1A_HUMAN	PP1A_HUMAN	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1	99.900000	0.010500	37495.900000	1.000000	4.000000	8.000000	Spectrum31860 scans:23387,	SDSEKLNLDSIIGR	S[+42]DSEKLNLDSIIGR	M	L	99.700000	69.100000	52.100000	54.300000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1625.890000	2.000000	-0.000970	-0.590000	2.000000	15.000000	65.439367	43.068633	0.634267	45.776400	33.037100	0.718900	NaN	NaN	12.404271	82.241255	62.484718	1.102881	53.251592	44.859936	1.074669	NaN	NaN	5.944159	67.746424	53.672327	0.000000	0.000000	0.000000	0.000000	0.082237	0.118693	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1	sp|P62136|PP1A_HUMAN	PP1A_HUMAN	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1	99.400000	0.043100	37495.900000	1.000000	3.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction5A.23396.23396.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23396"	SDSEKLNLDSIIGR	S[+42]DSEKLNLDSIIGR	M	L	99.600000	63.800000	55.500000	55.900000	Acetyl (+42), Dimethyl (+28)	1615.840000	2.000000	0.000860	0.530000	2.000000	15.000000	65.439367	43.068633	0.634267	45.776400	33.037100	0.718900	NaN	NaN	12.404271	82.241255	62.484718	1.102881	53.251592	44.859936	1.074669	NaN	NaN	5.944159	67.746424	53.672327	0.000000	0.000000	0.000000	0.000000	0.082208	0.118632	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1	sp|P62136|PP1A_HUMAN	PP1A_HUMAN	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1	99.400000	0.043100	37495.900000	1.000000	3.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction5A.23390.23390.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23390"	SDSEKLNLDSIIGR	S[+42]DSEKLNLDSIIGR	M	L	99.700000	77.800000	56.000000	69.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1633.870000	2.000000	0.001000	0.640000	2.000000	15.000000	65.439367	43.068633	0.634267	45.776400	33.037100	0.718900	NaN	NaN	12.404271	82.241255	62.484718	1.102881	53.251592	44.859936	1.074669	NaN	NaN	5.944159	67.746424	53.672327	0.000000	0.000000	0.000000	0.000000	0.082179	0.118269	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.034200	64268.600000	8.000000	18.000000	26.000000	Spectrum20255 scans:15393,	SDSFENPVLQQH	S[+28]DSFENPVLQQH	R	F	99.700000	77.600000	46.300000	71.800000	Dimethyl (+28)	1427.670000	2.000000	0.000260	0.180000	425.000000	436.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.034200	64268.600000	8.000000	18.000000	26.000000	Spectrum9915 scans:35823,	SDSFENPVLQQHFR	S[+28]DSFENPVLQQHFR	R	N	99.000000	34.200000	50.100000	34.200000	Dimethyl (+28), Label:13C(6) (+6)	1736.860000	3.000000	-0.001000	-0.600000	425.000000	438.000000	0.663200	0.208833	0.315467	40.353000	8.906100	0.182300	NaN	NaN	NaN	0.833480	0.302979	0.548542	46.942562	12.093285	0.272517	NaN	NaN	NaN	23.888021	6.198132	0.447061	0.480718	0.710955	0.532936	0.082120	0.118087	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1	sp|P62995|TRA2B_HUMAN	TRA2B_HUMAN	Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1	99.900000	0.005010	33648.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.5979.5979.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=5979"	SDSGEQNYGER	S[+42]DSGEQNYGER	M	E	99.200000	39.800000	40.900000	32.600000	Acetyl (+42), Label:13C(6) (+6)	1288.530000	2.000000	-0.000920	-0.710000	2.000000	12.000000	1.426267	13.814867	462.458833	0.554350	0.771400	1.428600	NaN	NaN	NaN	1.792468	20.042847	804.136382	0.644874	1.047457	2.135586	NaN	NaN	NaN	1.218671	10.545152	0.280143	0.433559	1.000000	0.876208	0.082062	0.117967	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1	sp|P62995|TRA2B_HUMAN	TRA2B_HUMAN	Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1	99.900000	0.005010	33648.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.5953.5953.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=5953"	SDSGEQNYGER	S[+42]DSGEQNYGER	M	E	99.700000	47.400000	38.400000	47.400000	Acetyl (+42)	1282.510000	2.000000	-0.001000	-0.790000	2.000000	12.000000	1.426267	13.814867	462.458833	0.554350	0.771400	1.428600	NaN	NaN	NaN	1.792468	20.042847	804.136382	0.644874	1.047457	2.135586	NaN	NaN	NaN	1.218671	10.545152	0.280143	0.433559	0.664453	0.712672	0.082033	0.117787	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	HTSF1_HUMAN	HTSF1_HUMAN	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	100.000000	0.017100	85836.600000	5.000000	8.000000	13.000000	Spectrum14117 scans:2592,	SDSVSASER	S[+28]DSVSASER	R	A	99.500000	57.000000	43.700000	39.800000	Dimethyl (+28)	964.450000	2.000000	0.000140	0.140000	385.000000	393.000000	1.513867	4.340933	7.268033	NaN	NaN	9.955400	NaN	NaN	NaN	1.902560	6.297901	12.637860	NaN	NaN	14.882129	NaN	NaN	NaN	1.902560	6.297901	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	HTSF1_HUMAN	HTSF1_HUMAN	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	100.000000	0.017100	85836.600000	5.000000	8.000000	13.000000	Spectrum14118 scans:2593,	SDSVSASER	S[+28]DSVSASER	R	A	99.700000	60.800000	44.300000	36.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	974.450000	2.000000	-0.000510	-0.520000	385.000000	393.000000	1.513867	4.340933	7.268033	NaN	NaN	9.955400	NaN	NaN	NaN	1.902560	6.297901	12.637860	NaN	NaN	14.882129	NaN	NaN	NaN	1.902560	6.297901	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of Sorting nexin-12 OS=Homo sapiens GN=SNX12	sp|Q9UMY4-2|SNX12_HUMAN	SNX12_HUMAN	Isoform 2 of Sorting nexin-12 OS=Homo sapiens GN=SNX12	97.700000	0.002330	18867.100000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.15726.15726.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15726"	SDTAVADTR	S[+42]DTAVADTR	M	R	99.700000	60.200000	46.900000	37.100000	Acetyl (+42)	976.450000	2.000000	-0.000790	-0.810000	2.000000	10.000000	0.704333	0.215267	0.330300	0.666100	0.825600	1.547900	3.832214	1.449314	1.848800	0.885174	0.312313	0.574335	0.774873	1.121054	2.313925	2.563097	0.617249	0.885950	1.407715	0.683538	0.135434	0.101255	0.146267	0.351002	0.005585	0.007998	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Tubulin-specific chaperone E OS=Homo sapiens GN=TBCE PE=1 SV=1	TBCE_HUMAN	TBCE_HUMAN	Tubulin-specific chaperone E OS=Homo sapiens GN=TBCE PE=1 SV=1	98.500000	0.002360	59329.700000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.48699.48699.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=48699"	SDTLTADVIGR	S[+42]DTLTADVIGR	M	R	99.700000	74.700000	52.000000	62.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1198.610000	2.000000	-0.000260	-0.220000	2.000000	12.000000	1.108867	1.728000	1.066300	0.688550	0.440650	0.637600	0.963657	2.440714	3.191471	1.393574	2.507012	1.854112	0.800989	0.598343	0.953136	0.644522	1.039477	1.529361	0.946362	1.381611	0.053487	0.138936	1.000000	0.481146	0.005583	0.007994	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tubulin-specific chaperone E OS=Homo sapiens GN=TBCE PE=1 SV=1	TBCE_HUMAN	TBCE_HUMAN	Tubulin-specific chaperone E OS=Homo sapiens GN=TBCE PE=1 SV=1	100.000000	0.005270	59329.700000	1.000000	3.000000	4.000000	Spectrum55404 scans:27710,	SDTLTADVIGR	S[+42]DTLTADVIGR	M	R	99.200000	55.700000	48.900000	37.900000	Acetyl (+42), Label:13C(6) (+6)	1194.620000	2.000000	0.000400	0.340000	2.000000	12.000000	1.108867	1.728000	1.066300	0.688550	0.440650	0.637600	0.963657	2.440714	3.191471	1.393574	2.507012	1.854112	0.800989	0.598343	0.953136	0.644522	1.039477	1.529361	0.946362	1.381611	0.053487	0.138936	1.000000	0.480666	0.005556	0.007986	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tubulin-specific chaperone E OS=Homo sapiens GN=TBCE PE=1 SV=1	TBCE_HUMAN	TBCE_HUMAN	Tubulin-specific chaperone E OS=Homo sapiens GN=TBCE PE=1 SV=1	100.000000	0.005270	59329.700000	1.000000	3.000000	4.000000	Spectrum55510 scans:27833,	SDTLTADVIGR	S[+42]DTLTADVIGR	M	R	99.700000	69.200000	48.100000	41.200000	Acetyl (+42)	1188.600000	2.000000	-0.000110	-0.091000	2.000000	12.000000	1.108867	1.728000	1.066300	0.688550	0.440650	0.637600	0.963657	2.440714	3.191471	1.393574	2.507012	1.854112	0.800989	0.598343	0.953136	0.644522	1.039477	1.529361	0.946362	1.381611	0.053487	0.138936	1.000000	0.433161	0.005554	0.007982	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Melanoma antigen family D, 2 OS=Homo sapiens GN=MAGED2 PE=2 SV=1	Q5H907_HUMAN	Q5H907_HUMAN	Melanoma antigen family D, 2 OS=Homo sapiens GN=MAGED2 PE=2 SV=1	98.700000	0.003950	55779.100000	1.000000	2.000000	3.000000	Spectrum21766 scans:5864,	SDTSESGAGLTR	S[+42]DTSESGAGLTR	M	F	99.600000	57.300000	43.200000	42.600000	Acetyl (+42)	1221.550000	2.000000	-0.000350	-0.290000	2.000000	13.000000	0.995667	1.202667	1.310400	0.364450	0.326100	0.997050	1.010571	0.577429	0.640557	1.251309	1.744850	2.278560	0.423964	0.442800	1.490470	0.675900	0.245921	0.306957	0.783724	0.811190	0.085298	0.226683	1.000000	0.706096	0.005552	0.007978	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Melanoma antigen family D, 2 OS=Homo sapiens GN=MAGED2 PE=2 SV=1	Q5H907_HUMAN	Q5H907_HUMAN	Melanoma antigen family D, 2 OS=Homo sapiens GN=MAGED2 PE=2 SV=1	99.600000	0.008960	55779.100000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.7755.7755.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7755"	SDTSESGAGLTR	S[+42]DTSESGAGLTR	M	F	99.700000	71.600000	46.100000	57.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1231.550000	2.000000	-0.010000	-8.300000	2.000000	13.000000	0.995667	1.202667	1.310400	0.364450	0.326100	0.997050	1.010571	0.577429	0.640557	1.251309	1.744850	2.278560	0.423964	0.442800	1.490470	0.675900	0.245921	0.306957	0.783724	0.811190	0.085298	0.226683	1.000000	1.000000	0.005550	0.007958	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Thioredoxin domain-containing protein 5 OS=Homo sapiens GN=TXNDC5 PE=1 SV=2	sp|Q8NBS9-2|TXND5_HUMAN	TXND5_HUMAN	Isoform 2 of Thioredoxin domain-containing protein 5 OS=Homo sapiens GN=TXNDC5	99.900000	0.001320	0.000000	1.000000	1.000000	1.000000	Spectrum35262 scans:4567,	SDVCSAQGVR	S[+28]DVC[+57]SAQGVR	H	G	98.500000	44.800000	45.000000	29.300000	Dimethyl (+28), Carbamidomethyl (+57)	1105.520000	2.000000	-0.000110	-0.097000	0.000000	0.000000	73.618533	25.624900	NaN	NaN	NaN	53.183650	NaN	1.729900	NaN	92.520464	37.177048	NaN	NaN	NaN	79.503177	NaN	0.736748	NaN	92.520464	18.956898	NaN	0.453182	NaN	1.000000	1.000000	0.116365	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1	EIF3E_HUMAN	EIF3E_HUMAN	Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E PE=1 SV=1	100.000000	0.007900	52204.600000	3.000000	5.000000	6.000000	Spectrum12106 scans:43643,	SEAPNWATQDSGFY	S[+28]EAPNWATQDSGFY	R	-	99.700000	88.200000	40.800000	81.000000	Dimethyl (+28)	1599.680000	2.000000	-0.003700	-2.300000	432.000000	445.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Annexin A1 OS=Homo sapiens GN=ANXA1 PE=1 SV=2	ANXA1_HUMAN	ANXA1_HUMAN	Annexin A1 OS=Homo sapiens GN=ANXA1 PE=1 SV=2	100.000000	0.004720	38697.900000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.40430.40430.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40430"	SEDFGVNEDLADSDAR	S[+28]EDFGVNEDLADSDAR	R	A	99.400000	57.800000	46.200000	57.800000	Dimethyl (+28)	1766.770000	2.000000	0.005800	3.300000	189.000000	204.000000	0.524600	0.246933	0.471800	NaN	NaN	NaN	NaN	NaN	NaN	0.659294	0.358255	0.820379	NaN	NaN	NaN	NaN	NaN	NaN	0.659294	0.358255	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Annexin A1 OS=Homo sapiens GN=ANXA1 PE=1 SV=2	ANXA1_HUMAN	ANXA1_HUMAN	Annexin A1 OS=Homo sapiens GN=ANXA1 PE=1 SV=2	100.000000	0.004670	38697.900000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.39107.39107.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39107"	SEDFGVNEDLADSDAR	S[+28]EDFGVNEDLADSDAR	R	A	99.700000	66.200000	45.800000	66.200000	Dimethyl (+28), Label:13C(6) (+6)	1772.770000	2.000000	-0.014000	-8.100000	189.000000	204.000000	0.524600	0.246933	0.471800	NaN	NaN	NaN	NaN	NaN	NaN	0.659294	0.358255	0.820379	NaN	NaN	NaN	NaN	NaN	NaN	0.659294	0.358255	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Annexin A1 OS=Homo sapiens GN=ANXA1 PE=1 SV=2	ANXA1_HUMAN	ANXA1_HUMAN	Annexin A1 OS=Homo sapiens GN=ANXA1 PE=1 SV=2	100.000000	0.004670	38697.900000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.39056.39056.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39056"	SEDFGVNEDLADSDAR	S[+28]EDFGVNEDLADSDAR	R	A	99.700000	74.700000	45.700000	74.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1776.770000	2.000000	-0.002500	-1.400000	189.000000	204.000000	0.524600	0.246933	0.471800	NaN	NaN	NaN	NaN	NaN	NaN	0.659294	0.358255	0.820379	NaN	NaN	NaN	NaN	NaN	NaN	0.659294	0.358255	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Serine/threonine-protein kinase OSR1 OS=Homo sapiens GN=OXSR1 PE=1 SV=1	OXSR1_HUMAN	OXSR1_HUMAN	Serine/threonine-protein kinase OSR1 OS=Homo sapiens GN=OXSR1 PE=1 SV=1	98.900000	0.002500	58005.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.31434.31434.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31434"	SEDSSALPWSINR	S[+42]EDSSALPWSINR	M	D	99.700000	64.200000	49.800000	54.300000	Acetyl (+42)	1502.700000	2.000000	-0.003400	-2.300000	2.000000	14.000000	1.033233	0.258367	0.257167	0.373550	0.197950	0.530100	NaN	NaN	NaN	1.298521	0.374843	0.447169	0.434550	0.268789	0.792436	NaN	NaN	NaN	0.866536	0.321816	0.294413	0.103964	1.000000	1.000000	0.081027	0.115898	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	CAN1_HUMAN	CAN1_HUMAN	Calpain-1 catalytic subunit OS=Homo sapiens GN=CAPN1 PE=1 SV=1	100.000000	0.009220	81874.600000	3.000000	6.000000	7.000000	Spectrum55679 scans:28030,	SEEIITPVYCTGVSAQVQKQR	S[+42]EEIITPVYC[+57]TGVSAQVQKQR	M	A	99.500000	85.900000	54.200000	77.600000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2480.260000	2.000000	-0.008800	-3.600000	2.000000	22.000000	3.552467	0.646333	0.177467	8.221100	6.572600	0.400750	NaN	NaN	NaN	4.464580	0.937712	0.308584	9.563589	8.924706	0.599073	NaN	NaN	NaN	7.014085	4.931209	0.221949	0.433355	0.903945	1.000000	0.080942	0.115840	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	sp|Q96KP4|CNDP2_HUMAN	CNDP2_HUMAN	Cytosolic non-specific dipeptidase OS=Homo sapiens GN=CNDP2 PE=1 SV=2	100.000000	0.042100	52861.700000	8.000000	16.000000	32.000000	Spectrum62099 scans:35881,	SEGLDELIFAR	S[+28]EGLDELIFAR	G	K	99.000000	53.600000	50.000000	41.900000	Dimethyl (+28), Label:13C(6) (+6)	1282.690000	2.000000	-0.000830	-0.650000	170.000000	180.000000	3.017033	3.033667	0.809567	0.522250	1.698400	8.227500	NaN	NaN	NaN	3.791672	4.401296	1.407697	0.607532	2.306199	12.299125	NaN	NaN	NaN	2.199602	3.353747	0.398855	0.192736	1.000000	1.000000	0.080914	0.115667	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1	sp|P62136|PP1A_HUMAN	PP1A_HUMAN	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1	100.000000	0.004480	37495.900000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.21986.21986.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21986"	SEKLNLDSIIGR	S[+28]EKLNLDSIIGR	D	L	99.300000	81.500000	54.700000	58.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1409.850000	3.000000	0.001600	1.100000	4.000000	15.000000	0.793700	0.449600	0.828800	8.851150	6.267850	0.716550	NaN	NaN	NaN	0.997486	0.652287	1.441141	10.296525	8.510897	1.071156	NaN	NaN	NaN	5.647006	4.581592	0.436707	0.451304	0.475934	1.000000	0.080886	0.115609	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2	P20D2_HUMAN	P20D2_HUMAN	Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2	100.000000	0.006590	47758.700000	3.000000	5.000000	5.000000	Spectrum54052 scans:26160,	SELELLKLR	S[+28]ELELLKLR	R	S	98.700000	31.400000	47.300000	21.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1173.740000	3.000000	-0.001200	-1.100000	18.000000	26.000000	142.884467	54.801533	0.406500	NaN	NaN	0.200900	NaN	NaN	NaN	179.570776	79.507012	0.706834	NaN	NaN	0.300321	NaN	NaN	NaN	179.570776	79.507012	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	KAP0_HUMAN	KAP0_HUMAN	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	100.000000	0.019800	42964.400000	2.000000	8.000000	15.000000	Spectrum19495 scans:12847,	SENEEFVEVGR	S[+28]ENEEFVEVGR	R	L	99.700000	68.800000	45.600000	48.800000	Dimethyl (+28)	1321.610000	2.000000	-0.000002	-0.001200	307.000000	317.000000	0.799000	0.316433	0.465667	NaN	0.995200	1.844750	NaN	NaN	NaN	1.004147	0.459087	0.809714	NaN	1.351348	2.757680	NaN	NaN	NaN	1.004147	0.905217	NaN	0.291512	NaN	0.869026	1.000000	0.115493	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	KAP0_HUMAN	KAP0_HUMAN	cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Homo sapiens GN=PRKAR1A PE=1 SV=1	100.000000	0.019800	42964.400000	2.000000	8.000000	15.000000	Spectrum45271 scans:16113,	SENEEFVEVGR	S[+28]ENEEFVEVGR	R	L	99.700000	74.300000	46.700000	55.700000	Dimethyl (+28), Label:13C(6) (+6)	1327.630000	2.000000	-0.002100	-1.600000	307.000000	317.000000	0.799000	0.316433	0.465667	NaN	0.995200	1.844750	NaN	NaN	NaN	1.004147	0.459087	0.809714	NaN	1.351348	2.757680	NaN	NaN	NaN	1.004147	0.905217	NaN	0.291512	NaN	0.592587	1.000000	0.115436	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 1 of Ena/VASP-like protein OS=Homo sapiens GN=EVL	sp|Q9UI08-2|EVL_HUMAN	EVL_HUMAN	Isoform 1 of Ena/VASP-like protein OS=Homo sapiens GN=EVL	100.000000	0.011900	44773.800000	2.000000	5.000000	9.000000	Spectrum26925 scans:7541,	SEQSICQAR	S[+42]EQSIC[+57]QAR	T	A	99.400000	52.900000	44.000000	35.300000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6) (+6)	1125.520000	2.000000	-0.000360	-0.320000	4.000000	12.000000	0.636100	2.820767	5.425333	1.024450	0.355300	0.357450	NaN	NaN	NaN	0.799422	4.092417	9.433722	1.191741	0.482450	0.534345	NaN	NaN	NaN	0.995581	2.287433	0.123847	0.425295	0.231172	0.494230	0.080604	0.115263	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 1 of Ena/VASP-like protein OS=Homo sapiens GN=EVL	sp|Q9UI08-2|EVL_HUMAN	EVL_HUMAN	Isoform 1 of Ena/VASP-like protein OS=Homo sapiens GN=EVL	100.000000	0.011900	44773.800000	2.000000	5.000000	9.000000	Spectrum26929 scans:7546,	SEQSICQAR	S[+42]EQSIC[+57]QAR	T	A	99.700000	58.000000	42.900000	43.800000	Acetyl (+42), Carbamidomethyl (+57)	1119.500000	2.000000	-0.000250	-0.230000	4.000000	12.000000	0.636100	2.820767	5.425333	1.024450	0.355300	0.357450	NaN	NaN	NaN	0.799422	4.092417	9.433722	1.191741	0.482450	0.534345	NaN	NaN	NaN	0.995581	2.287433	0.123847	0.425295	0.181866	0.494065	0.080576	0.115206	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 1 of Ena/VASP-like protein OS=Homo sapiens GN=EVL	sp|Q9UI08-2|EVL_HUMAN	EVL_HUMAN	Isoform 1 of Ena/VASP-like protein OS=Homo sapiens GN=EVL	100.000000	0.013400	44773.800000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.8108.8108.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8108"	SEQSICQAR	S[+42]EQSIC[+57]QAR	T	A	99.700000	82.400000	46.400000	36.700000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1129.510000	2.000000	0.000400	0.360000	4.000000	12.000000	0.636100	2.820767	5.425333	1.024450	0.355300	0.357450	NaN	NaN	NaN	0.799422	4.092417	9.433722	1.191741	0.482450	0.534345	NaN	NaN	NaN	0.995581	2.287433	0.123847	0.425295	0.181789	0.493900	0.080464	0.115148	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Diphosphoinositol polyphosphate phosphohydrolase 1 OS=Homo sapiens GN=NUDT3 PE=1 SV=1	NUDT3_HUMAN	NUDT3_HUMAN	Diphosphoinositol polyphosphate phosphohydrolase 1 OS=Homo sapiens GN=NUDT3 PE=1 SV=1	97.700000	0.002330	19452.500000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.40285.40285.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40285"	SESEEEVLLVSSSR	S[+28]ESEEEVLLVSSSR	R	H	99.700000	65.100000	52.900000	54.100000	Dimethyl (+28)	1577.770000	2.000000	-0.005200	-3.300000	28.000000	41.000000	0.723333	1.102967	1.286333	0.062700	0.566450	5.881550	NaN	NaN	NaN	0.909053	1.600203	2.236712	0.072939	0.769163	8.792212	NaN	NaN	NaN	0.490996	1.184683	0.449029	0.214756	1.000000	0.399572	0.080436	0.115091	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Glia maturation factor beta (Fragment) OS=Homo sapiens GN=GMFB PE=4 SV=1	G3V4P8_HUMAN	G3V4P8_HUMAN	Glia maturation factor beta (Fragment) OS=Homo sapiens GN=GMFB PE=4 SV=1	100.000000	0.011500	17494.400000	1.000000	3.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.49980.49980.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=49980"	SESLVVCDVAEDLVEKLR	S[+42]ESLVVC[+57]DVAEDLVEKLR	K	K	99.700000	108.000000	57.500000	95.100000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl (+28)	2130.090000	2.000000	0.000016	0.007700	14.000000	31.000000	20.989833	12.525400	0.768467	NaN	NaN	NaN	NaN	NaN	NaN	26.379079	18.172067	1.336231	NaN	NaN	NaN	NaN	NaN	NaN	26.379079	18.172067	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Glia maturation factor beta (Fragment) OS=Homo sapiens GN=GMFB PE=4 SV=1	G3V4P8_HUMAN	G3V4P8_HUMAN	Glia maturation factor beta (Fragment) OS=Homo sapiens GN=GMFB PE=4 SV=1	100.000000	0.009440	17494.400000	2.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64847.64847.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64847"	SESLVVCDVAEDLVEKLR	S[+42]ESLVVC[+57]DVAEDLVEKLR	K	K	99.500000	69.300000	58.700000	65.000000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2140.140000	2.000000	0.002500	1.200000	14.000000	31.000000	20.989833	12.525400	0.768467	NaN	NaN	NaN	NaN	NaN	NaN	26.379079	18.172067	1.336231	NaN	NaN	NaN	NaN	NaN	NaN	26.379079	18.172067	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Glia maturation factor beta (Fragment) OS=Homo sapiens GN=GMFB PE=4 SV=1	G3V4P8_HUMAN	G3V4P8_HUMAN	Glia maturation factor beta (Fragment) OS=Homo sapiens GN=GMFB PE=4 SV=1	100.000000	0.009440	17494.400000	2.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64846.64846.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64846"	SESLVVCDVAEDLVEKLR	S[+42]ESLVVC[+57]DVAEDLVEKLR	K	K	99.700000	98.800000	58.100000	90.200000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2148.110000	2.000000	0.000890	0.420000	14.000000	31.000000	20.989833	12.525400	0.768467	NaN	NaN	NaN	NaN	NaN	NaN	26.379079	18.172067	1.336231	NaN	NaN	NaN	NaN	NaN	NaN	26.379079	18.172067	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone H1.5 OS=Homo sapiens GN=HIST1H1B PE=1 SV=3	H15_HUMAN	H15_HUMAN	Histone H1.5 OS=Homo sapiens GN=HIST1H1B PE=1 SV=3	100.000000	0.006590	22563.700000	4.000000	5.000000	5.000000	Spectrum19128 scans:11920,	SETAPAETATPAPVEKSPA	S[+42]ETAPAETATPAPVEKSPA	M	K	98.800000	36.000000	51.800000	30.000000	Acetyl (+42), Dimethyl:2H(4) (+32)	1926.970000	3.000000	-0.002100	-1.100000	2.000000	20.000000	3.257133	4.673700	1.181767	NaN	NaN	NaN	NaN	NaN	NaN	4.093419	6.780685	2.054889	NaN	NaN	NaN	NaN	NaN	NaN	4.093419	6.780685	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	ANX11_HUMAN	ANX11_HUMAN	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	100.000000	0.008640	54373.700000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.23263.23263.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23263"	SETDLLDIR	S[+28]ETDLLDIR	R	S	98.900000	53.200000	52.000000	15.700000	Dimethyl (+28)	1088.570000	2.000000	-0.000610	-0.560000	462.000000	470.000000	0.876600	0.976567	0.708967	0.891150	0.951700	2.070200	NaN	NaN	NaN	1.101671	1.416820	1.232771	1.036673	1.292281	3.094701	NaN	NaN	NaN	1.069172	1.354550	0.019345	0.029245	0.022052	0.119812	0.080074	0.114749	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	ANX11_HUMAN	ANX11_HUMAN	Annexin A11 OS=Homo sapiens GN=ANXA11 PE=1 SV=1	100.000000	0.008640	54373.700000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.23267.23267.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23267"	SETDLLDIR	S[+28]ETDLLDIR	R	S	99.100000	63.200000	52.500000	14.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1098.590000	2.000000	0.005600	5.100000	462.000000	470.000000	0.876600	0.976567	0.708967	0.891150	0.951700	2.070200	NaN	NaN	NaN	1.101671	1.416820	1.232771	1.036673	1.292281	3.094701	NaN	NaN	NaN	1.069172	1.354550	0.019345	0.029245	0.022045	0.029682	0.080046	0.114578	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction3A (Nsco_Tails_biological_replicate_3_fraction3A_127089)	Vasodilator-stimulated phosphoprotein OS=Homo sapiens GN=VASP PE=1 SV=3	VASP_HUMAN	VASP_HUMAN	Vasodilator-stimulated phosphoprotein OS=Homo sapiens GN=VASP PE=1 SV=3	99.200000	0.079400	39811.100000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction3A.8026.8026.2 File:"Nsco_Tails_biological_replicate_3_fraction3A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8026"	SETVICSSR	S[+42]ETVIC[+57]SSR	M	A	99.700000	56.400000	47.500000	27.500000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1089.500000	2.000000	0.000730	0.670000	2.000000	10.000000	0.465500	0.244067	0.523533	0.807150	0.300400	0.378950	11.787743	1.141686	3.149229	0.585019	0.354096	0.910334	0.938956	0.407903	0.566485	7.883987	0.486233	1.509119	3.135987	0.416077	0.317732	0.008394	0.458623	0.008517	0.005454	0.007804	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Short of Cold shock domain-containing protein E1 OS=Homo sapiens GN=CSDE1	sp|O75534|CSDE1_HUMAN	CSDE1_HUMAN	Cold shock domain-containing protein E1 OS=Homo sapiens GN=CSDE1 PE=1 SV=2	100.000000	0.003950	88867.000000	3.000000	3.000000	3.000000	Spectrum30751 scans:18061,	SFDPNLLHNNGH	S[+42]FDPNLLHNNGH	M	N	99.100000	49.700000	44.300000	40.300000	Acetyl (+42)	1405.640000	2.000000	-0.001200	-0.860000	2.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Methylosome subunit pICln OS=Homo sapiens GN=CLNS1A PE=1 SV=1	ICLN_HUMAN	ICLN_HUMAN	Methylosome subunit pICln OS=Homo sapiens GN=CLNS1A PE=1 SV=1	100.000000	0.043500	26197.400000	3.000000	7.000000	33.000000	Spectrum68767 scans:43533,	SFLKSFPPPGPAEGLLR	S[+42]FLKSFPPPGPAEGLLR	M	Q	99.200000	62.600000	53.100000	48.100000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1892.080000	2.000000	-0.003200	-1.700000	2.000000	18.000000	41.933500	22.183500	0.626233	36.185950	20.490350	0.533150	NaN	NaN	NaN	52.700138	32.184205	1.088912	42.095041	27.823138	0.796995	NaN	NaN	NaN	47.397590	30.003672	0.000000	0.000000	0.000000	0.000000	0.079798	0.114182	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Methylosome subunit pICln OS=Homo sapiens GN=CLNS1A PE=1 SV=1	ICLN_HUMAN	ICLN_HUMAN	Methylosome subunit pICln OS=Homo sapiens GN=CLNS1A PE=1 SV=1	100.000000	0.008960	26197.400000	1.000000	1.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.34472.34472.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34472"	SFLKSFPPPGPAEGLLR	S[+42]FLKSFPPPGPAEGLLR	M	Q	99.700000	67.900000	58.100000	47.600000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1900.060000	2.000000	-0.002400	-1.200000	2.000000	18.000000	41.933500	22.183500	0.626233	36.185950	20.490350	0.533150	NaN	NaN	NaN	52.700138	32.184205	1.088912	42.095041	27.823138	0.796995	NaN	NaN	NaN	47.397590	30.003672	0.000000	0.000000	0.000000	0.000000	0.079715	0.114126	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS PE=1 SV=5	SYEP_HUMAN	SYEP_HUMAN	Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS PE=1 SV=5	96.600000	0.004480	170575.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.27780.27780.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27780"	SFTSTINELNHCLSLR	S[+28]FTSTINELNHC[+57]LSLR	D	T	99.100000	77.200000	55.600000	64.800000	Dimethyl (+28), Carbamidomethyl (+57)	1918.960000	3.000000	0.001800	0.910000	94.000000	109.000000	3.411300	1.039233	2.852133	0.594700	0.318900	0.565350	NaN	NaN	NaN	4.287169	1.507738	4.959369	0.691813	0.433023	0.845130	NaN	NaN	NaN	2.489491	0.970380	0.398148	0.321954	0.573743	0.660663	0.079551	0.113957	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	GUAA_HUMAN	GUAA_HUMAN	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	100.000000	0.013200	76698.700000	5.000000	10.000000	10.000000	Spectrum53658 scans:25724,	SFYNGTTTLPISDEDR	S[+28]FYNGTTTLPISDEDR	H	T	99.700000	106.000000	47.500000	87.800000	Dimethyl (+28)	1842.860000	2.000000	-0.005600	-3.100000	302.000000	317.000000	NaN	NaN	NaN	NaN	NaN	0.197800	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.295687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	GUAA_HUMAN	GUAA_HUMAN	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	100.000000	0.013200	76698.700000	5.000000	10.000000	10.000000	Spectrum53647 scans:25712,	SFYNGTTTLPISDEDR	S[+28]FYNGTTTLPISDEDR	H	T	99.700000	94.300000	48.100000	84.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1852.870000	2.000000	-0.002300	-1.200000	302.000000	317.000000	NaN	NaN	NaN	NaN	NaN	0.197800	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.295687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	GUAA_HUMAN	GUAA_HUMAN	GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1	100.000000	0.013200	76698.700000	5.000000	10.000000	10.000000	Spectrum53696 scans:25766,	SFYNGTTTLPISDEDR	S[+28]FYNGTTTLPISDEDR	H	T	99.700000	114.000000	48.800000	99.100000	Dimethyl (+28), Label:13C(6) (+6)	1848.880000	2.000000	-0.004100	-2.200000	302.000000	317.000000	NaN	NaN	NaN	NaN	NaN	0.197800	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.295687	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.039500	29487.900000	8.000000	18.000000	30.000000	Spectrum71484 scans:47157,	SGALDVLQMKEEDVLKF	S[+42]GALDVLQM[+16]KEEDVLKF	M	L	98.700000	66.000000	54.000000	57.600000	Acetyl (+42), Oxidation (+16), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	2043.110000	2.000000	0.002200	1.100000	2.000000	18.000000	5.300800	2.497400	0.471100	54.549850	17.806750	0.354000	NaN	NaN	NaN	6.661807	3.623271	0.819162	63.457729	24.179170	0.529188	NaN	NaN	NaN	35.059768	13.901221	0.125880	0.278702	0.183223	1.000000	0.079414	0.113733	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.039500	29487.900000	8.000000	18.000000	30.000000	Spectrum71511 scans:47199,	SGALDVLQMKEEDVLKF	S[+42]GALDVLQM[+16]KEEDVLKF	M	L	98.900000	36.000000	53.700000	26.100000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	2051.080000	3.000000	-0.000120	-0.056000	2.000000	18.000000	5.300800	2.497400	0.471100	54.549850	17.806750	0.354000	NaN	NaN	NaN	6.661807	3.623271	0.819162	63.457729	24.179170	0.529188	NaN	NaN	NaN	35.059768	13.901221	0.125880	0.278702	0.183146	1.000000	0.079387	0.113677	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.039500	29487.900000	8.000000	18.000000	30.000000	Spectrum74044 scans:53878,	SGALDVLQMKEEDVLKFLAAGTH	S[+42]GALDVLQM[+16]KEEDVLKFLAAGTH	M	L	99.100000	43.300000	55.600000	31.300000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	2601.370000	3.000000	-0.003700	-1.400000	2.000000	24.000000	NaN	0.428100	NaN	194.751900	103.996100	0.522500	NaN	NaN	NaN	NaN	0.621095	NaN	226.554486	141.212710	0.781075	NaN	NaN	NaN	226.554486	70.916902	NaN	0.460511	NaN	0.555816	1.000000	0.113566	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Obg-like ATPase 1 OS=Homo sapiens GN=OLA1 PE=1 SV=2	sp|Q9NTK5|OLA1_HUMAN	OLA1_HUMAN	Obg-like ATPase 1 OS=Homo sapiens GN=OLA1 PE=1 SV=2	100.000000	0.007900	44727.400000	4.000000	5.000000	6.000000	Spectrum56519 scans:29027,	SGALELKLQELSAEER	S[+28]GALELKLQELSAEER	F	Q	99.700000	44.100000	53.000000	34.700000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1838.040000	3.000000	-0.000400	-0.220000	264.000000	279.000000	NaN	NaN	0.407000	NaN	126.706000	0.265800	NaN	NaN	NaN	NaN	NaN	0.707703	NaN	172.049698	0.397339	NaN	NaN	NaN	NaN	172.049698	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2	LA_HUMAN	LA_HUMAN	Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2	100.000000	0.014500	46821.000000	4.000000	5.000000	11.000000	Spectrum15047 scans:4004,	SGDLDDQTCR	S[+28]GDLDDQTC[+57]R	F	E	99.700000	70.700000	41.000000	50.000000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1199.520000	2.000000	-0.000500	-0.410000	237.000000	246.000000	5.651433	9.641067	3.222567	25.103800	21.604800	NaN	NaN	NaN	NaN	7.102467	13.987426	5.603489	29.203199	29.336411	NaN	NaN	NaN	NaN	18.152833	21.661919	0.106843	0.000000	0.137619	0.000000	0.079251	0.113343	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	PA2G4_HUMAN	PA2G4_HUMAN	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	100.000000	0.023700	43768.700000	6.000000	9.000000	18.000000	Spectrum12499 scans:45827,	SGEDEQQEQTIAEDLVVTK	S[+42]GEDEQQEQTIAEDLVVTK	M	Y	99.700000	52.900000	50.200000	51.700000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	2196.050000	3.000000	-0.002900	-1.300000	2.000000	20.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	PA2G4_HUMAN	PA2G4_HUMAN	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	100.000000	0.023700	43768.700000	6.000000	9.000000	18.000000	Spectrum21193 scans:26452,	SGEDEQQEQTIAEDLVVTKY	S[+42]GEDEQQEQTIAEDLVVTKY	M	K	99.700000	96.800000	50.600000	96.400000	Acetyl (+42), Dimethyl:2H(4) (+32)	2355.130000	3.000000	-0.002000	-0.860000	2.000000	21.000000	6.460850	6.285750	NaN	91.938600	55.706350	0.601850	NaN	NaN	NaN	8.119706	9.119475	NaN	106.951985	75.641727	0.899694	NaN	NaN	NaN	57.535845	42.380601	0.065827	0.029298	0.084662	0.054924	0.079197	0.113066	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	PA2G4_HUMAN	PA2G4_HUMAN	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	100.000000	0.002500	43768.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37510.37510.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37510"	SGEDEQQEQTIAEDLVVTKY	S[+42]GEDEQQEQTIAEDLVVTKY	M	K	99.700000	111.000000	54.900000	108.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	2359.130000	2.000000	0.009300	3.900000	2.000000	21.000000	6.460850	6.285750	NaN	91.938600	55.706350	0.601850	NaN	NaN	NaN	8.119706	9.119475	NaN	106.951985	75.641727	0.899694	NaN	NaN	NaN	57.535845	42.380601	0.065827	0.029298	0.082941	0.162924	0.079088	0.113011	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	PA2G4_HUMAN	PA2G4_HUMAN	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	100.000000	0.039500	43768.700000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.23203.23203.3 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23203"	SGEDEQQEQTIAEDLVVTKYK	S[+42]GEDEQQEQTIAEDLVVTKYK	M	M	99.100000	70.600000	59.000000	64.400000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	2515.280000	3.000000	-0.000820	-0.330000	2.000000	22.000000	6.455900	1.634633	0.264267	143.722400	74.747800	0.513050	251.937943	NaN	NaN	8.113485	2.371554	0.459514	167.191973	101.497454	0.766948	168.503456	NaN	NaN	114.602972	51.934504	0.004473	0.351761	0.005633	1.000000	0.005385	0.112791	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	PA2G4_HUMAN	PA2G4_HUMAN	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	99.300000	0.010800	43768.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.23707.23707.3 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23707"	SGEDEQQEQTIAEDLVVTKYK	S[+42]GEDEQQEQTIAEDLVVTKYK	M	M	99.700000	83.200000	57.100000	83.200000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	2507.230000	3.000000	-0.001500	-0.610000	2.000000	22.000000	6.455900	1.634633	0.264267	143.722400	74.747800	0.513050	251.937943	NaN	NaN	8.113485	2.371554	0.459514	167.191973	101.497454	0.766948	168.503456	NaN	NaN	114.602972	51.934504	0.004473	0.351761	0.005631	1.000000	0.005383	0.112736	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	PA2G4_HUMAN	PA2G4_HUMAN	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	100.000000	0.013400	43768.700000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.27349.27349.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27349"	SGEDEQQEQTIAEDLVVTKYK	S[+42]GEDEQQEQTIAEDLVVTKYK	M	M	99.700000	84.200000	58.100000	84.200000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	2523.260000	2.000000	-0.000820	-0.330000	2.000000	22.000000	6.455900	1.634633	0.264267	143.722400	74.747800	0.513050	251.937943	NaN	NaN	8.113485	2.371554	0.459514	167.191973	101.497454	0.766948	168.503456	NaN	NaN	114.602972	51.934504	0.004473	0.351761	0.004994	0.614607	0.005381	0.112681	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Platelet-activating factor acetylhydrolase IB subunit gamma OS=Homo sapiens GN=PAFAH1B3 PE=1 SV=1	PA1B3_HUMAN	PA1B3_HUMAN	Platelet-activating factor acetylhydrolase IB subunit gamma OS=Homo sapiens GN=PAFAH1B3 PE=1 SV=1	100.000000	0.010500	25715.600000	4.000000	7.000000	8.000000	Spectrum42265 scans:12651,	SGEENPASKPTPVQDVQGDGR	S[+42]GEENPASKPTPVQDVQGDGR	M	W	99.700000	78.400000	51.700000	65.500000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2247.100000	2.000000	-0.001600	-0.720000	2.000000	22.000000	28.326600	13.955767	0.466400	8.930850	5.330150	0.273800	NaN	NaN	NaN	35.599598	20.247268	0.810989	10.389239	7.237626	0.409298	NaN	NaN	NaN	22.994419	13.742447	0.000000	0.101160	0.000000	0.176661	0.078899	0.112516	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Platelet-activating factor acetylhydrolase IB subunit gamma OS=Homo sapiens GN=PAFAH1B3 PE=1 SV=1	PA1B3_HUMAN	PA1B3_HUMAN	Platelet-activating factor acetylhydrolase IB subunit gamma OS=Homo sapiens GN=PAFAH1B3 PE=1 SV=1	100.000000	0.010500	25715.600000	4.000000	7.000000	8.000000	Spectrum42281 scans:12669,	SGEENPASKPTPVQDVQGDGR	S[+42]GEENPASKPTPVQDVQGDGR	M	W	99.700000	86.600000	50.300000	81.400000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2255.080000	2.000000	-0.002500	-1.100000	2.000000	22.000000	28.326600	13.955767	0.466400	8.930850	5.330150	0.273800	NaN	NaN	NaN	35.599598	20.247268	0.810989	10.389239	7.237626	0.409298	NaN	NaN	NaN	22.994419	13.742447	0.000000	0.101160	0.000000	0.428079	0.078846	0.112462	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	sp|Q13263|TIF1B_HUMAN	TIF1B_HUMAN	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	100.000000	0.007900	88531.000000	4.000000	6.000000	6.000000	Spectrum3330 scans:18279,	SGEGEVSGLMR	S[+28]GEGEVSGLM[+16]R	R	K	98.700000	46.000000	45.000000	20.800000	Dimethyl (+28), Oxidation (+16)	1164.540000	2.000000	-0.001200	-0.990000	473.000000	483.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Inorganic pyrophosphatase OS=Homo sapiens GN=PPA1 PE=1 SV=2	IPYR_HUMAN	IPYR_HUMAN	Inorganic pyrophosphatase OS=Homo sapiens GN=PPA1 PE=1 SV=2	100.000000	0.005760	32642.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.10766.10766.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=10766"	SGFSTEER	SGFSTEER	M	A	99.000000	53.700000	43.600000	32.700000	Acetyl (+42)	953.410000	2.000000	0.000880	0.920000	2.000000	9.000000	NaN	123.324133	0.327133	1.720050	2.566400	2.059450	NaN	NaN	NaN	NaN	178.920785	0.568829	2.000931	3.484826	3.078631	NaN	NaN	NaN	2.000931	91.202806	NaN	0.286527	NaN	0.425803	1.000000	0.112352	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Inorganic pyrophosphatase OS=Homo sapiens GN=PPA1 PE=1 SV=2	IPYR_HUMAN	IPYR_HUMAN	Inorganic pyrophosphatase OS=Homo sapiens GN=PPA1 PE=1 SV=2	100.000000	0.010500	32642.600000	1.000000	3.000000	8.000000	Spectrum40904 scans:11105,	SGFSTEER	SGFSTEER	M	A	99.000000	53.800000	41.400000	38.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	963.420000	2.000000	0.000200	0.210000	2.000000	9.000000	NaN	123.324133	0.327133	1.720050	2.566400	2.059450	NaN	NaN	NaN	NaN	178.920785	0.568829	2.000931	3.484826	3.078631	NaN	NaN	NaN	2.000931	91.202806	NaN	0.286527	NaN	0.688538	1.000000	0.112189	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Inorganic pyrophosphatase OS=Homo sapiens GN=PPA1 PE=1 SV=2	IPYR_HUMAN	IPYR_HUMAN	Inorganic pyrophosphatase OS=Homo sapiens GN=PPA1 PE=1 SV=2	100.000000	0.010500	32642.600000	1.000000	3.000000	8.000000	Spectrum27724 scans:9097,	SGFSTEER	SGFSTEER	M	A	99.000000	57.100000	42.500000	42.900000	Acetyl (+42), Label:13C(6) (+6)	959.430000	2.000000	0.000320	0.340000	2.000000	9.000000	NaN	123.324133	0.327133	1.720050	2.566400	2.059450	NaN	NaN	NaN	NaN	178.920785	0.568829	2.000931	3.484826	3.078631	NaN	NaN	NaN	2.000931	91.202806	NaN	0.286527	NaN	0.688062	1.000000	0.112134	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.079000	62047.800000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate_3_fraction2A.5883.5883.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=5883"	SGGGGGGGLGSGGSIR	SGGGGGGGLGSGGSIR	R	S	99.700000	103.000000	51.500000	63.700000	Dimethyl (+28)	1259.620000	2.000000	-0.000870	-0.690000	14.000000	29.000000	0.056700	0.205100	19.345533	0.026150	0.487500	38.537200	NaN	NaN	NaN	0.071258	0.297563	33.638556	0.030420	0.661959	57.608491	NaN	NaN	NaN	0.050839	0.479761	0.243136	0.231058	1.000000	0.487696	0.078712	0.112080	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction3A (Nsco_Tails_biological_replicate_3_fraction3A_127089)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.397000	62047.800000	4.000000	5.000000	5.000000	Nsco_Tails_biological_replicate_3_fraction3A.4709.4709.2 File:"Nsco_Tails_biological_replicate_3_fraction3A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4709"	SGGGGGGGLGSGGSIR	SGGGGGGGLGSGGSIR	R	S	99.700000	102.000000	50.200000	61.700000		1231.590000	2.000000	-0.000780	-0.630000	14.000000	29.000000	0.056700	0.205100	19.345533	0.026150	0.487500	38.537200	NaN	NaN	NaN	0.071258	0.297563	33.638556	0.030420	0.661959	57.608491	NaN	NaN	NaN	0.050839	0.479761	0.243136	0.231058	1.000000	0.487399	0.078631	0.112026	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Glycogen synthase kinase-3 alpha OS=Homo sapiens GN=GSK3A PE=1 SV=2	GSK3A_HUMAN	GSK3A_HUMAN	Glycogen synthase kinase-3 alpha OS=Homo sapiens GN=GSK3A PE=1 SV=2	97.700000	0.002330	50963.900000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.8682.8682.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8682"	SGGGPSGGGPGGSGR	S[+42]GGGPSGGGPGGSGR	M	A	99.700000	78.000000	45.400000	66.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1194.520000	2.000000	-0.001900	-1.600000	2.000000	16.000000	NaN	NaN	NaN	NaN	0.145650	0.792600	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.197773	1.184842	NaN	NaN	NaN	NaN	0.197773	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Glycogen synthase kinase-3 alpha OS=Homo sapiens GN=GSK3A PE=1 SV=2	GSK3A_HUMAN	GSK3A_HUMAN	Glycogen synthase kinase-3 alpha OS=Homo sapiens GN=GSK3A PE=1 SV=2	100.000000	0.004630	50963.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction6A.3341.3341.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3341"	SGGGPSGGGPGGSGR	S[+42]GGGPSGGGPGGSGR	M	A	98.900000	46.600000	45.000000	45.200000	Acetyl (+42)	1184.520000	2.000000	-0.001800	-1.500000	2.000000	16.000000	NaN	NaN	NaN	NaN	0.145650	0.792600	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.197773	1.184842	NaN	NaN	NaN	NaN	0.197773	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	sp|P53396|ACLY_HUMAN	ACLY_HUMAN	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	100.000000	0.014400	120824.800000	4.000000	5.000000	5.000000	Nsco_Tails_biological_replicate1_apoptosis.19316.19316.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19316"	SGGMSNELNNIISR	S[+28]GGM[+16]SNELNNIISR	R	T	99.700000	90.300000	51.600000	82.000000	Dimethyl (+28), Oxidation (+16)	1534.730000	2.000000	-0.006300	-4.100000	663.000000	676.000000	1.148900	0.236100	0.280733	4.742300	4.453600	0.971500	NaN	NaN	NaN	1.443886	0.342538	0.488147	5.516708	6.047390	1.452276	NaN	NaN	NaN	3.480297	3.194964	0.337033	0.463979	0.554005	1.000000	0.078471	0.111863	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 4E-binding protein 1 OS=Homo sapiens GN=EIF4EBP1 PE=1 SV=3	4EBP1_HUMAN	4EBP1_HUMAN	Eukaryotic translation initiation factor 4E-binding protein 1 OS=Homo sapiens GN=EIF4EBP1 PE=1 SV=3	98.800000	0.002630	12562.200000	1.000000	2.000000	2.000000	Spectrum33783 scans:2895,	SGGSSCSQTPSR	S[+42]GGSSC[+57]SQTPSR	M	A	99.700000	87.900000	38.100000	73.000000	Acetyl (+42), Carbamidomethyl (+57)	1251.510000	2.000000	-0.000490	-0.390000	2.000000	13.000000	0.683367	0.223067	0.331033	NaN	NaN	NaN	NaN	NaN	NaN	0.858825	0.323629	0.575610	NaN	NaN	NaN	NaN	NaN	NaN	0.858825	0.323629	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Eukaryotic translation initiation factor 4E-binding protein 1 OS=Homo sapiens GN=EIF4EBP1 PE=1 SV=3	4EBP1_HUMAN	4EBP1_HUMAN	Eukaryotic translation initiation factor 4E-binding protein 1 OS=Homo sapiens GN=EIF4EBP1 PE=1 SV=3	97.700000	0.004670	12562.200000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.7828.7828.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7828"	SGGSSCSQTPSR	S[+42]GGSSC[+57]SQTPSR	M	A	99.700000	65.800000	42.400000	53.200000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1261.530000	2.000000	0.002200	1.700000	2.000000	13.000000	0.683367	0.223067	0.331033	NaN	NaN	NaN	NaN	NaN	NaN	0.858825	0.323629	0.575610	NaN	NaN	NaN	NaN	NaN	NaN	0.858825	0.323629	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.035600	26545.800000	9.000000	20.000000	27.000000	Spectrum58798 scans:31811,	SGLAAKHFIDVGAGVIDEDYR	S[+28]GLAAKHFIDVGAGVIDEDYR	R	G	99.300000	63.300000	54.600000	50.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2306.210000	3.000000	0.009600	4.200000	174.000000	194.000000	3.306633	1.892467	0.629400	3.649500	0.763950	0.153200	NaN	NaN	NaN	4.155628	2.745623	1.094418	4.245456	1.037341	0.229016	NaN	NaN	NaN	4.200542	1.891482	0.006807	0.270029	0.042253	1.000000	0.078365	0.111594	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.035600	26545.800000	9.000000	20.000000	27.000000	Spectrum58794 scans:31806,	SGLAAKHFIDVGAGVIDEDYR	S[+28]GLAAKHFIDVGAGVIDEDYR	R	G	99.700000	99.200000	54.800000	88.400000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2298.220000	3.000000	-0.000620	-0.270000	174.000000	194.000000	3.306633	1.892467	0.629400	3.649500	0.763950	0.153200	NaN	NaN	NaN	4.155628	2.745623	1.094418	4.245456	1.037341	0.229016	NaN	NaN	NaN	4.200542	1.891482	0.006807	0.270029	0.011893	1.000000	0.078338	0.111486	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction3A (Nsco_Tails_biological_replicate_3_fraction3A_127089)	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	TCPQ_HUMAN	TCPQ_HUMAN	T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4	100.000000	0.318000	59603.000000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction3A.9345.9345.2 File:"Nsco_Tails_biological_replicate_3_fraction3A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9345"	SGLEEAVYR	S[+28]GLEEAVYR	F	N	99.000000	49.900000	51.000000	34.100000	Dimethyl (+28)	1050.530000	2.000000	0.000360	0.340000	23.000000	31.000000	0.449467	0.806633	2.343000	0.854900	0.722150	0.764700	NaN	NaN	NaN	0.564870	1.170278	4.074074	0.994503	0.980583	1.143135	NaN	NaN	NaN	0.779686	1.075430	0.171153	0.056002	0.298894	0.070561	0.078312	0.111379	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform B of GDP-fucose protein O-fucosyltransferase 2 OS=Homo sapiens GN=POFUT2	sp|Q9Y2G5-2|OFUT2_HUMAN	OFUT2_HUMAN	Isoform B of GDP-fucose protein O-fucosyltransferase 2 OS=Homo sapiens GN=POFUT2	98.800000	0.001320	44066.200000	1.000000	1.000000	1.000000	Spectrum65093 scans:39278,	SGQEFWPGQSAADILSGAASR	S[+28]GQEFWPGQSAADILSGAASR	A	R	99.700000	61.400000	51.400000	50.200000	Dimethyl (+28), Label:13C(6) (+6)	2168.060000	3.000000	0.001100	0.520000	22.000000	42.000000	2.160833	4.420767	16.121000	NaN	1.128400	NaN	NaN	NaN	NaN	2.715638	6.413725	28.031647	NaN	1.532215	NaN	NaN	NaN	NaN	2.715638	3.972970	NaN	0.350712	NaN	0.441732	1.000000	0.111325	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C	sp|Q9UNZ2|NSF1C_HUMAN	NSF1C_HUMAN	NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2	100.000000	0.014500	40555.200000	6.000000	10.000000	11.000000	Spectrum38742 scans:8588,	SGQQIVGPPR	S[+28]GQQIVGPPR	R	K	98.800000	55.200000	49.000000	19.600000	Dimethyl (+28)	1065.590000	2.000000	0.000700	0.650000	102.000000	111.000000	7.019667	41.276700	2.956800	0.875000	9.831500	16.197300	NaN	NaN	NaN	8.822002	59.884950	5.141367	1.017886	13.349854	24.213020	NaN	NaN	NaN	4.919944	36.617402	0.426870	0.000000	1.000000	0.000000	0.078259	0.111111	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphatidylinositol-binding clathrin assembly protein OS=Homo sapiens GN=PICALM PE=4 SV=1	E9PJT1_HUMAN	E9PJT1_HUMAN	Phosphatidylinositol-binding clathrin assembly protein OS=Homo sapiens GN=PICALM PE=4 SV=1	95.700000	0.003950	5207.000000	1.000000	3.000000	3.000000	Spectrum26077 scans:6001,	SGQSLTDR	S[+42]GQSLTDR	M	I	99.000000	63.400000	44.400000	33.400000	Acetyl (+42)	904.420000	2.000000	-0.000610	-0.670000	2.000000	9.000000	0.899967	0.996533	1.005900	0.848350	0.398650	0.459150	0.659114	NaN	NaN	1.131038	1.445788	1.749087	0.986884	0.541313	0.686374	0.440835	NaN	NaN	0.852919	0.993550	0.055711	0.271931	0.420252	0.779834	0.005334	0.110898	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphatidylinositol-binding clathrin assembly protein OS=Homo sapiens GN=PICALM PE=4 SV=1	E9PJT1_HUMAN	E9PJT1_HUMAN	Phosphatidylinositol-binding clathrin assembly protein OS=Homo sapiens GN=PICALM PE=4 SV=1	95.700000	0.003950	5207.000000	1.000000	3.000000	3.000000	Spectrum26103 scans:6051,	SGQSLTDR	S[+42]GQSLTDR	M	I	99.000000	65.500000	45.600000	24.000000	Acetyl (+42), Label:13C(6) (+6)	910.440000	2.000000	-0.000280	-0.300000	2.000000	9.000000	0.899967	0.996533	1.005900	0.848350	0.398650	0.459150	0.659114	NaN	NaN	1.131038	1.445788	1.749087	0.986884	0.541313	0.686374	0.440835	NaN	NaN	0.852919	0.993550	0.055711	0.271931	0.160428	0.779190	0.005332	0.110792	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Phosphatidylinositol-binding clathrin assembly protein OS=Homo sapiens GN=PICALM PE=4 SV=1	E9PJT1_HUMAN	E9PJT1_HUMAN	Phosphatidylinositol-binding clathrin assembly protein OS=Homo sapiens GN=PICALM PE=4 SV=1	96.100000	0.002500	5207.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.6551.6551.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6551"	SGQSLTDR	S[+42]GQSLTDR	M	I	99.000000	50.800000	47.500000	24.100000	Acetyl (+42), Label:13C(6)15N(4) (+10)	914.430000	2.000000	-0.002800	-3.000000	2.000000	9.000000	0.899967	0.996533	1.005900	0.848350	0.398650	0.459150	0.659114	NaN	NaN	1.131038	1.445788	1.749087	0.986884	0.541313	0.686374	0.440835	NaN	NaN	0.852919	0.993550	0.055711	0.271931	0.160295	0.778547	0.005330	0.110686	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	PSB6_HUMAN	PSB6_HUMAN	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	100.000000	0.011900	25339.900000	5.000000	8.000000	9.000000	Spectrum20619 scans:17051,	SGSAADTQAVADAVTY	S[+28]GSAADTQAVADAVTY	R	Q	99.700000	86.000000	46.200000	78.700000	Dimethyl (+28)	1553.720000	2.000000	-0.000780	-0.500000	80.000000	95.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Caspase-3 subunit p12 OS=Homo sapiens GN=CASP3 PE=4 SV=2	A8MVM1_HUMAN	A8MVM1_HUMAN	Caspase-3 subunit p12 OS=Homo sapiens GN=CASP3 PE=4 SV=2	100.000000	0.005270	20491.200000	3.000000	3.000000	4.000000	Spectrum39483 scans:9453,	SGTDVDAANLR	S[+28]GTDVDAANLR	R	E	99.700000	68.200000	47.500000	52.500000	Dimethyl (+28)	1145.570000	2.000000	-0.000540	-0.470000	65.000000	75.000000	0.598500	0.240967	0.405133	4.616800	0.336650	0.191350	2.708314	1.569786	0.937029	0.752168	0.349599	0.704457	5.370714	0.457125	0.286045	1.811400	0.668557	0.449027	2.644761	0.491760	0.198821	0.034434	0.238393	0.035635	0.005323	0.007532	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	HTSF1_HUMAN	HTSF1_HUMAN	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	100.000000	0.079000	85836.600000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate_3_fraction2A.18897.18897.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18897"	SGTNLDGNDEFDEQLR	S[+42]GTNLDGNDEFDEQLR	M	M	99.700000	106.000000	45.100000	91.300000	Acetyl (+42)	1850.790000	2.000000	-0.001200	-0.640000	2.000000	17.000000	0.608233	0.030067	0.049400	0.731750	0.095300	0.130200	NaN	NaN	NaN	0.764400	0.043621	0.085898	0.851243	0.129405	0.194633	NaN	NaN	NaN	0.807822	0.086513	0.034186	0.293016	0.040976	0.503350	0.078048	0.110264	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	HTSF1_HUMAN	HTSF1_HUMAN	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	100.000000	0.017100	85836.600000	5.000000	8.000000	13.000000	Spectrum20866 scans:18896,	SGTNLDGNDEFDEQLR	S[+42]GTNLDGNDEFDEQLR	M	M	99.700000	105.000000	41.600000	82.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1860.800000	2.000000	-0.003100	-1.700000	2.000000	17.000000	0.608233	0.030067	0.049400	0.731750	0.095300	0.130200	NaN	NaN	NaN	0.764400	0.043621	0.085898	0.851243	0.129405	0.194633	NaN	NaN	NaN	0.807822	0.086513	0.034186	0.293016	0.096132	0.502852	0.078021	0.110159	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Cytochrome c oxidase subunit 5A, mitochondrial OS=Homo sapiens GN=COX5A PE=1 SV=2	COX5A_HUMAN	COX5A_HUMAN	Cytochrome c oxidase subunit 5A, mitochondrial OS=Homo sapiens GN=COX5A PE=1 SV=2	98.900000	0.002330	16744.500000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.15584.15584.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15584"	SHGSQETDEEFDAR	S[+28]HGSQETDEEFDAR	Y	W	99.700000	57.100000	42.700000	48.300000	Dimethyl (+28)	1634.680000	3.000000	-0.001400	-0.850000	42.000000	55.000000	NaN	10.235167	NaN	NaN	4.883650	NaN	NaN	NaN	NaN	NaN	14.849357	NaN	NaN	6.631340	NaN	NaN	NaN	NaN	NaN	10.740348	NaN	0.127225	NaN	0.218119	NaN	0.110106	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1	SYQ_HUMAN	SYQ_HUMAN	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1	100.000000	0.005270	87781.900000	4.000000	4.000000	4.000000	Spectrum10730 scans:38535,	SHPLDPIDTVDFER	S[+28]HPLDPIDTVDFER	R	E	99.400000	35.600000	49.400000	26.300000	Dimethyl (+28)	1667.810000	3.000000	-0.000920	-0.550000	96.000000	109.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Twinfilin-1 OS=Homo sapiens GN=TWF1 PE=1 SV=3	sp|Q12792|TWF1_HUMAN	TWF1_HUMAN	Twinfilin-1 OS=Homo sapiens GN=TWF1 PE=1 SV=3	99.900000	0.002630	40266.200000	1.000000	2.000000	2.000000	Spectrum56340 scans:28798,	SHQTGIQASEDVKEIFAR	S[+42]HQTGIQASEDVKEIFAR	M	A	99.700000	72.300000	52.900000	63.700000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2103.070000	3.000000	-0.000140	-0.067000	2.000000	19.000000	10.759200	9.531200	0.963300	13.372800	3.082100	0.235650	NaN	NaN	NaN	13.521679	13.828030	1.675013	15.556551	4.185077	0.352268	NaN	NaN	NaN	14.539115	9.006553	0.000000	0.247670	0.000000	0.902747	0.077864	0.109845	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Enhancer of rudimentary homolog OS=Homo sapiens GN=ERH PE=1 SV=1	ERH_HUMAN	ERH_HUMAN	Enhancer of rudimentary homolog OS=Homo sapiens GN=ERH PE=1 SV=1	99.900000	0.002630	12241.300000	1.000000	1.000000	2.000000	Spectrum11102 scans:39698,	SHTILLVQPT	S[+42]HTILLVQPT	M	K	99.700000	68.500000	49.600000	58.000000	Acetyl (+42)	1149.640000	2.000000	-0.000029	-0.025000	2.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4	sp|O75083|WDR1_HUMAN	WDR1_HUMAN	WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4	100.000000	0.011900	66175.200000	4.000000	6.000000	9.000000	Spectrum56350 scans:28811,	SIDNPGYEPEVVAVHPGGDTVAIGGVDGNVR	S[+28]IDNPGYEPEVVAVHPGGDTVAIGGVDGNVR	F	L	99.500000	42.800000	55.300000	40.100000	Dimethyl (+28), Label:13C(6) (+6)	3123.560000	3.000000	-0.000420	-0.130000	440.000000	470.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4	sp|O75083|WDR1_HUMAN	WDR1_HUMAN	WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4	100.000000	0.011900	66175.200000	4.000000	6.000000	9.000000	Spectrum56356 scans:28818,	SIDNPGYEPEVVAVHPGGDTVAIGGVDGNVR	S[+28]IDNPGYEPEVVAVHPGGDTVAIGGVDGNVR	F	L	99.600000	43.700000	54.700000	38.200000	Dimethyl (+28)	3117.540000	3.000000	-0.000420	-0.130000	440.000000	470.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A	sp|P78559|MAP1A_HUMAN	MAP1A_HUMAN	Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A PE=1 SV=6	100.000000	0.015800	305468.400000	8.000000	11.000000	12.000000	Spectrum10294 scans:36984,	SIEEACLTLQHLNR	S[+28]IEEAC[+57]LTLQHLNR	R	L	98.500000	34.900000	51.700000	29.300000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1716.890000	3.000000	-0.002300	-1.400000	155.000000	168.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A	sp|P78559|MAP1A_HUMAN	MAP1A_HUMAN	Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A PE=1 SV=6	100.000000	0.015800	305468.400000	8.000000	11.000000	12.000000	Spectrum10292 scans:36969,	SIEEACLTLQHLNR	S[+28]IEEAC[+57]LTLQHLNR	R	L	99.400000	42.000000	51.300000	30.200000	Dimethyl (+28), Carbamidomethyl (+57)	1710.880000	3.000000	0.002600	1.500000	155.000000	168.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	WD40 repeat-containing protein SMU1 OS=Homo sapiens GN=SMU1 PE=1 SV=2	SMU1_HUMAN	SMU1_HUMAN	WD40 repeat-containing protein SMU1 OS=Homo sapiens GN=SMU1 PE=1 SV=2	99.800000	0.002630	57526.800000	1.000000	2.000000	2.000000	Spectrum31352 scans:20605,	SIEIESSDVIR	S[+42]IEIESSDVIR	M	L	99.700000	77.600000	49.400000	52.600000	Acetyl (+42), Label:13C(6) (+6)	1294.670000	2.000000	-0.000280	-0.210000	2.000000	12.000000	1.714400	1.043433	0.840500	0.663650	0.781100	1.184400	NaN	NaN	NaN	2.154581	1.513831	1.461485	0.772023	1.060629	1.770536	NaN	NaN	NaN	1.463302	1.287230	0.280962	0.110933	1.000000	0.307949	0.077551	0.109274	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	WD40 repeat-containing protein SMU1 OS=Homo sapiens GN=SMU1 PE=1 SV=2	SMU1_HUMAN	SMU1_HUMAN	WD40 repeat-containing protein SMU1 OS=Homo sapiens GN=SMU1 PE=1 SV=2	99.000000	0.002500	57526.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.27092.27092.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27092"	SIEIESSDVIR	S[+42]IEIESSDVIR	M	L	99.700000	63.200000	52.500000	38.500000	Acetyl (+42)	1288.650000	2.000000	0.000047	0.037000	2.000000	12.000000	1.714400	1.043433	0.840500	0.663650	0.781100	1.184400	NaN	NaN	NaN	2.154581	1.513831	1.461485	0.772023	1.060629	1.770536	NaN	NaN	NaN	1.463302	1.287230	0.280962	0.110933	1.000000	0.223930	0.077525	0.109223	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Max-binding protein MNT OS=Homo sapiens GN=MNT PE=1 SV=1	MNT_HUMAN	MNT_HUMAN	Max-binding protein MNT OS=Homo sapiens GN=MNT PE=1 SV=1	99.400000	0.005010	62281.100000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.42936.42936.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42936"	SIETLLEAAR	S[+42]IETLLEAAR	M	F	99.300000	55.400000	53.100000	26.300000	Acetyl (+42)	1143.620000	2.000000	0.001400	1.200000	2.000000	11.000000	1.640800	0.829100	0.505300	0.811800	0.286450	0.343750	NaN	NaN	NaN	2.062084	1.202873	0.878630	0.944365	0.388961	0.513865	NaN	NaN	NaN	1.503224	0.795917	0.226598	0.300899	0.968343	0.607046	0.077499	0.109171	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Enolase-phosphatase E1 OS=Homo sapiens GN=ENOPH1 PE=4 SV=1	sp|Q9UHY7|ENOPH_HUMAN	ENOPH_HUMAN	Enolase-phosphatase E1 OS=Homo sapiens GN=ENOPH1 PE=1 SV=1	97.400000	0.002880	28914.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.35552.35552.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35552"	SIGCSTNNILFLTDVTR	S[+28]IGC[+57]STNNILFLTDVTR	D	E	99.700000	102.000000	56.200000	91.800000	Dimethyl (+28), Carbamidomethyl (+57)	1937.980000	2.000000	-0.007700	-4.000000	199.000000	215.000000	0.797300	0.428400	0.514600	NaN	NaN	NaN	NaN	NaN	NaN	1.002011	0.621530	0.894801	NaN	NaN	NaN	NaN	NaN	NaN	1.002011	0.621530	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4	TCPD_HUMAN	TCPD_HUMAN	T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4	100.000000	0.001320	57907.900000	1.000000	1.000000	1.000000	Spectrum48973 scans:20377,	SIHDALCVIR	S[+28]IHDALC[+57]VIR	R	C	99.600000	37.400000	49.600000	0.000000	Dimethyl (+28), Carbamidomethyl (+57)	1210.650000	3.000000	0.000500	0.410000	404.000000	413.000000	0.674200	0.301733	0.446800	2.278100	1.350450	0.407800	NaN	NaN	NaN	0.847304	0.437760	0.776908	2.650109	1.833729	0.609612	NaN	NaN	NaN	1.748707	1.135745	0.302996	0.350814	0.441578	0.377114	0.077447	0.109017	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2	SAE2_HUMAN	SAE2_HUMAN	SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2	100.000000	0.013400	71207.200000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.25618.25618.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25618"	SIMNPDYNVEFFR	S[+28]IMNPDYNVEFFR	D	Q	99.400000	52.400000	50.000000	52.400000	Dimethyl (+28), Oxidation (+16)	1674.770000	2.000000	-0.000690	-0.410000	95.000000	107.000000	0.563833	0.462733	0.870667	0.616500	5.017100	8.295400	NaN	NaN	7.291543	0.708600	0.671342	1.513940	0.717173	6.812547	12.400628	NaN	NaN	3.494126	0.712887	3.741944	0.003828	0.437466	0.009413	0.631451	0.077421	0.108965	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2	SAE2_HUMAN	SAE2_HUMAN	SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2	100.000000	0.013400	71207.200000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.29078.29078.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29078"	SIMNPDYNVEFFR	S[+28]IMNPDYNVEFFR	D	Q	99.700000	87.100000	50.700000	77.500000	Dimethyl (+28)	1658.770000	2.000000	-0.002900	-1.700000	95.000000	107.000000	0.563833	0.462733	0.870667	0.616500	5.017100	8.295400	NaN	NaN	7.291543	0.708600	0.671342	1.513940	0.717173	6.812547	12.400628	NaN	NaN	3.494126	0.712887	3.741944	0.003828	0.437466	0.009407	0.631188	0.077291	0.108914	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	DYHC1_HUMAN	DYHC1_HUMAN	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	100.000000	0.009220	532387.600000	5.000000	7.000000	7.000000	Spectrum19119 scans:11902,	SIPLDEGEDEAQR	S[+28]IPLDEGEDEAQR	R	R	99.700000	77.900000	46.500000	64.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1495.700000	2.000000	-0.003600	-2.400000	2384.000000	2396.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	DYHC1_HUMAN	DYHC1_HUMAN	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	100.000000	0.009220	532387.600000	5.000000	7.000000	7.000000	Spectrum19114 scans:11892,	SIPLDEGEDEAQR	S[+28]IPLDEGEDEAQR	R	R	99.700000	72.400000	46.500000	60.300000	Dimethyl (+28)	1485.690000	2.000000	-0.000420	-0.280000	2384.000000	2396.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1	TBL1R_HUMAN	TBL1R_HUMAN	F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1	97.400000	0.005760	55576.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.38598.38598.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38598"	SISSDEVNFLVYR	S[+42]ISSDEVNFLVYR	M	Y	99.700000	95.100000	52.400000	81.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1579.770000	2.000000	-0.010000	-6.500000	2.000000	14.000000	0.468800	0.416100	0.887500	0.941650	0.404950	0.432200	NaN	NaN	NaN	0.589167	0.603685	1.543210	1.095420	0.549868	0.646087	NaN	NaN	NaN	0.842293	0.576776	0.185851	0.029679	0.227881	0.042769	0.077188	0.108709	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1	TBL1R_HUMAN	TBL1R_HUMAN	F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1	98.800000	0.003950	55576.800000	1.000000	3.000000	3.000000	Spectrum66982 scans:41419,	SISSDEVNFLVYR	S[+42]ISSDEVNFLVYR	M	Y	99.700000	76.300000	49.800000	62.700000	Acetyl (+42), Label:13C(6) (+6)	1575.790000	2.000000	-0.001200	-0.770000	2.000000	14.000000	0.468800	0.416100	0.887500	0.941650	0.404950	0.432200	NaN	NaN	NaN	0.589167	0.603685	1.543210	1.095420	0.549868	0.646087	NaN	NaN	NaN	0.842293	0.576776	0.185851	0.029679	0.227801	0.042751	0.077163	0.108658	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1	TBL1R_HUMAN	TBL1R_HUMAN	F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1	98.800000	0.003950	55576.800000	1.000000	3.000000	3.000000	Spectrum13286 scans:49050,	SISSDEVNFLVYR	S[+42]ISSDEVNFLVYR	M	Y	99.700000	94.600000	48.700000	77.800000	Acetyl (+42)	1569.760000	2.000000	-0.002900	-1.900000	2.000000	14.000000	0.468800	0.416100	0.887500	0.941650	0.404950	0.432200	NaN	NaN	NaN	0.589167	0.603685	1.543210	1.095420	0.549868	0.646087	NaN	NaN	NaN	0.842293	0.576776	0.185851	0.029679	1.000000	0.070394	0.077137	0.108607	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Structural maintenance of chromosomes protein OS=Homo sapiens GN=SMC4 PE=3 SV=1	E9PD53_HUMAN	E9PD53_HUMAN	Structural maintenance of chromosomes protein OS=Homo sapiens GN=SMC4 PE=3 SV=1	100.000000	0.008960	144442.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.24671.24671.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24671"	SITNQIALLEAR	S[+28]ITNQIALLEAR	D	C	99.400000	59.500000	55.100000	46.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1365.790000	2.000000	-0.000190	-0.140000	1046.000000	1057.000000	1.061633	0.228500	0.392800	0.601950	0.093550	0.148900	NaN	NaN	NaN	1.334213	0.331512	0.683012	0.700247	0.127028	0.222588	NaN	NaN	NaN	1.017230	0.229270	0.192308	0.267047	1.000000	0.632960	0.076957	0.108556	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Structural maintenance of chromosomes protein OS=Homo sapiens GN=SMC4 PE=3 SV=1	E9PD53_HUMAN	E9PD53_HUMAN	Structural maintenance of chromosomes protein OS=Homo sapiens GN=SMC4 PE=3 SV=1	100.000000	0.008960	144442.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.24669.24669.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24669"	SITNQIALLEAR	S[+28]ITNQIALLEAR	D	C	99.700000	67.400000	55.100000	59.200000	Dimethyl (+28)	1355.770000	2.000000	-0.002600	-1.900000	1046.000000	1057.000000	1.061633	0.228500	0.392800	0.601950	0.093550	0.148900	NaN	NaN	NaN	1.334213	0.331512	0.683012	0.700247	0.127028	0.222588	NaN	NaN	NaN	1.017230	0.229270	0.192308	0.267047	0.356469	0.635564	0.076932	0.108454	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	sp|P33993|MCM7_HUMAN	MCM7_HUMAN	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	100.000000	0.020200	81291.000000	4.000000	7.000000	7.000000	Nsco_Tails_biological_replicate1_apoptosis.19105.19105.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19105"	SITVLVEGENTR	S[+28]ITVLVEGENTR	R	I	99.100000	56.900000	54.500000	32.700000	Dimethyl (+28)	1344.720000	2.000000	-0.000410	-0.300000	252.000000	263.000000	1.604667	0.152900	0.145533	71.388300	11.575550	2.943200	188.284800	NaN	NaN	2.016673	0.221830	0.253057	83.045863	15.718039	4.399731	125.930375	NaN	NaN	70.330970	7.969935	0.110175	0.485880	0.613654	1.000000	0.005240	0.108302	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	sp|P33993|MCM7_HUMAN	MCM7_HUMAN	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	100.000000	0.020200	81291.000000	4.000000	7.000000	7.000000	Nsco_Tails_biological_replicate1_apoptosis.19118.19118.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19118"	SITVLVEGENTR	S[+28]ITVLVEGENTR	R	I	99.700000	66.400000	54.600000	58.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1354.730000	2.000000	-0.001900	-1.400000	252.000000	263.000000	1.604667	0.152900	0.145533	71.388300	11.575550	2.943200	188.284800	NaN	NaN	2.016673	0.221830	0.253057	83.045863	15.718039	4.399731	125.930375	NaN	NaN	70.330970	7.969935	0.110175	0.485880	0.113646	1.000000	0.005238	0.108201	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3	tr|M0QXB4|M0QXB4_HUMAN	M0QXB4_HUMAN	Coatomer protein complex, subunit epsilon, isoform CRA_g OS=Homo sapiens GN=COPE PE=1 SV=1	99.900000	0.004480	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.15385.15385.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15385"	SIVAELDR	NaN	D	E	99.000000	55.100000	51.800000	17.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	939.530000	2.000000	0.000340	0.360000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit C OS=Homo sapiens GN=EIF3C PE=1 SV=1	EIF3C_HUMAN	EIF3C_HUMAN	Eukaryotic translation initiation factor 3 subunit C OS=Homo sapiens GN=EIF3C PE=1 SV=1	100.000000	0.006590	105329.200000	4.000000	5.000000	5.000000	Spectrum16727 scans:6872,	SIVDKEGVPR	S[+28]IVDKEGVPR	K	F	99.700000	47.400000	49.500000	33.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1172.690000	3.000000	-0.000490	-0.420000	95.000000	104.000000	0.773800	0.701733	1.305533	3.769050	0.747000	0.140350	NaN	NaN	NaN	0.972477	1.018087	2.270098	4.384528	1.014325	0.209806	NaN	NaN	NaN	2.678503	1.016206	0.361049	0.001178	1.000000	0.088876	0.076778	0.108100	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.029000	31307.200000	7.000000	15.000000	22.000000	Spectrum790 scans:11030,	SKEVATAIR	S[+28]KEVATAIR	C	G	99.500000	38.300000	48.300000	22.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1047.640000	3.000000	-0.001200	-1.100000	144.000000	152.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Neuronal-specific septin-3 OS=Homo sapiens GN=SEPT3	sp|Q9UH03-2|SEPT3_HUMAN	SEPT3_HUMAN	Isoform 2 of Neuronal-specific septin-3 OS=Homo sapiens GN=SEPT3	99.900000	0.001320	40082.700000	1.000000	1.000000	1.000000	Spectrum16005 scans:5619,	SKGLPETR	NaN	M	T	99.000000	54.100000	48.300000	12.300000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	974.550000	2.000000	-0.000160	-0.160000	2.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4	RL13_HUMAN	RL13_HUMAN	60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4	100.000000	0.006590	24244.200000	3.000000	4.000000	5.000000	Spectrum9274 scans:33799,	SKLILFPR	NaN	R	K	99.000000	41.600000	44.200000	15.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1046.700000	3.000000	-0.000045	-0.043000	122.000000	129.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5	sp|O15511|ARPC5_HUMAN	ARPC5_HUMAN	Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5 PE=1 SV=3	100.000000	0.010000	16302.600000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.2428.2428.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2428"	SKNTVSSAR	S[+42]KNTVSSAR	M	F	99.600000	56.700000	51.800000	24.900000	Acetyl (+42), Dimethyl (+28)	1018.540000	2.000000	0.000540	0.530000	2.000000	10.000000	16.582033	42.346767	24.263833	39.772200	21.500550	0.540600	NaN	NaN	1.135486	20.839554	61.437421	42.190634	46.266919	29.194854	0.808132	NaN	NaN	0.544128	33.553236	45.316138	0.000000	0.000000	0.000000	0.000000	0.076449	0.107848	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Isoform 2 of Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5	sp|O15511|ARPC5_HUMAN	ARPC5_HUMAN	Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5 PE=1 SV=3	96.800000	0.010800	16302.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.2495.2495.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2495"	SKNTVSSAR	S[+42]KNTVSSAR	M	F	98.600000	51.000000	52.700000	28.200000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1028.590000	2.000000	0.000390	0.380000	2.000000	10.000000	16.582033	42.346767	24.263833	39.772200	21.500550	0.540600	NaN	NaN	1.135486	20.839554	61.437421	42.190634	46.266919	29.194854	0.808132	NaN	NaN	0.544128	33.553236	45.316138	0.000000	0.000000	0.000000	0.000000	0.076423	0.107797	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Matrin-3 OS=Homo sapiens GN=MATR3 PE=4 SV=1	A8MXP9_HUMAN	A8MXP9_HUMAN	Matrin-3 OS=Homo sapiens GN=MATR3 PE=4 SV=1	98.900000	0.008960	99952.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.9552.9552.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9552"	SKSFQQSSLSR	S[+42]KSFQQSSLSR	M	D	99.700000	63.400000	53.800000	43.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1341.700000	2.000000	-0.000920	-0.690000	2.000000	12.000000	120.369800	37.283100	0.305567	185.228450	45.153900	0.215250	NaN	NaN	NaN	151.275355	54.090966	0.531328	215.475876	61.312920	0.321773	NaN	NaN	NaN	183.375616	57.701943	0.000000	0.000000	0.000000	0.000000	0.076398	0.107747	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Matrin-3 OS=Homo sapiens GN=MATR3 PE=4 SV=1	sp|P43243|MATR3_HUMAN	MATR3_HUMAN	Matrin-3 OS=Homo sapiens GN=MATR3 PE=1 SV=2	98.900000	0.008960	94608.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.9559.9559.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9559"	SKSFQQSSLSR	S[+42]KSFQQSSLSR	M	D	99.700000	59.800000	53.100000	44.300000	Acetyl (+42), Dimethyl (+28)	1323.680000	2.000000	-0.001400	-1.000000	2.000000	12.000000	120.369800	37.283100	0.305567	185.228450	45.153900	0.215250	NaN	NaN	NaN	151.275355	54.090966	0.531328	215.475876	61.312920	0.321773	NaN	NaN	NaN	183.375616	57.701943	0.000000	0.000000	0.000000	0.000000	0.076272	0.107697	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	ADA_HUMAN	ADA_HUMAN	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	100.000000	0.017300	40747.100000	3.000000	4.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.45802.45802.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=45802"	SKVEPIPWNQAEGDLTPDEVVALVGQGLQEGER	S[+28]KVEPIPWNQAEGDLTPDEVVALVGQGLQEGER	N	D	99.500000	88.400000	62.800000	86.400000	Dimethyl (+28), Dimethyl (+28)	3615.840000	3.000000	-0.002600	-0.730000	110.000000	142.000000	85.198000	50.205500	0.637200	NaN	NaN	NaN	NaN	NaN	NaN	107.073017	72.839008	1.107981	NaN	NaN	NaN	NaN	NaN	NaN	107.073017	72.839008	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum65782 scans:40047,	SLDIQSLDIQCEELSDAR	S[+42]LDIQSLDIQC[+57]EELSDAR	M	W	99.700000	93.900000	48.900000	80.700000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6) (+6)	2139.000000	2.000000	-0.005300	-2.500000	2.000000	19.000000	0.355300	0.166350	0.335750	0.646850	0.517700	0.799350	NaN	NaN	NaN	0.446525	0.241343	0.583812	0.752479	0.702967	1.194932	NaN	NaN	NaN	0.599502	0.472155	0.159054	0.289462	0.164408	0.322450	0.076172	0.107497	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum65904 scans:40182,	SLDIQSLDIQCEELSDAR	S[+42]LDIQSLDIQC[+57]EELSDAR	M	W	99.700000	89.900000	48.500000	78.200000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2143.000000	2.000000	0.000460	0.210000	2.000000	19.000000	0.355300	0.166350	0.335750	0.646850	0.517700	0.799350	NaN	NaN	NaN	0.446525	0.241343	0.583812	0.752479	0.702967	1.194932	NaN	NaN	NaN	0.599502	0.472155	0.159054	0.289462	1.000000	0.322347	0.076147	0.107447	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum66029 scans:40323,	SLDIQSLDIQCEELSDAR	S[+42]LDIQSLDIQC[+57]EELSDAR	M	W	99.700000	121.000000	47.800000	109.000000	Acetyl (+42), Carbamidomethyl (+57)	2132.990000	2.000000	-0.004200	-2.000000	2.000000	19.000000	0.355300	0.166350	0.335750	0.646850	0.517700	0.799350	NaN	NaN	NaN	0.446525	0.241343	0.583812	0.752479	0.702967	1.194932	NaN	NaN	NaN	0.599502	0.472155	0.159054	0.289462	1.000000	0.322243	0.076122	0.107297	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 2 subunit 1 OS=Homo sapiens GN=EIF2S1 PE=1 SV=3	IF2A_HUMAN	IF2A_HUMAN	Eukaryotic translation initiation factor 2 subunit 1 OS=Homo sapiens GN=EIF2S1 PE=1 SV=3	99.800000	0.002500	36094.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.11867.11867.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11867"	SLDLNEDER	S[+28]LDLNEDER	D	E	99.500000	50.300000	48.800000	37.100000	Dimethyl (+28)	1117.530000	2.000000	0.000180	0.160000	165.000000	173.000000	2.762833	0.630000	0.312200	4.347750	1.392300	0.389650	NaN	15.097414	NaN	3.472205	0.914015	0.542862	5.057729	1.890556	0.582480	NaN	6.429845	NaN	4.264967	3.078139	0.116998	0.211791	0.243395	0.242307	0.076096	0.007309	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Structural maintenance of chromosomes protein 2 OS=Homo sapiens GN=SMC2	sp|O95347|SMC2_HUMAN	SMC2_HUMAN	Structural maintenance of chromosomes protein 2 OS=Homo sapiens GN=SMC2 PE=1 SV=2	99.900000	0.003950	135642.700000	1.000000	3.000000	3.000000	Spectrum20567 scans:16781,	SLEDALAEAQR	S[+28]LEDALAEAQR	R	V	99.500000	59.100000	48.800000	38.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1239.630000	2.000000	-0.000630	-0.510000	298.000000	308.000000	2.485433	16.266267	6.492400	2.181100	10.480100	16.492600	NaN	NaN	NaN	3.123581	23.599381	11.289167	2.537269	14.230566	24.654458	NaN	NaN	NaN	2.830425	18.914973	0.065702	0.000000	0.093056	0.000000	0.076071	0.107148	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Structural maintenance of chromosomes protein 2 OS=Homo sapiens GN=SMC2	sp|O95347|SMC2_HUMAN	SMC2_HUMAN	Structural maintenance of chromosomes protein 2 OS=Homo sapiens GN=SMC2 PE=1 SV=2	99.900000	0.003950	135642.700000	1.000000	3.000000	3.000000	Spectrum20564 scans:16777,	SLEDALAEAQR	S[+28]LEDALAEAQR	R	V	99.700000	72.200000	48.600000	43.000000	Dimethyl (+28)	1229.620000	2.000000	-0.000780	-0.640000	298.000000	308.000000	2.485433	16.266267	6.492400	2.181100	10.480100	16.492600	NaN	NaN	NaN	3.123581	23.599381	11.289167	2.537269	14.230566	24.654458	NaN	NaN	NaN	2.830425	18.914973	0.065702	0.000000	0.092980	0.000000	0.076046	0.107049	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein flightless-1 homolog OS=Homo sapiens GN=FLII PE=1 SV=2	sp|Q13045-2|FLII_HUMAN	FLII_HUMAN	Isoform 2 of Protein flightless-1 homolog OS=Homo sapiens GN=FLII	98.400000	0.001320	0.000000	1.000000	1.000000	1.000000	Spectrum10744 scans:38579,	SLEGTEAQVF	S[+28]LEGTEAQVF	R	K	99.100000	56.000000	47.100000	43.200000	Dimethyl (+28)	1107.550000	2.000000	0.000400	0.360000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2	RFA1_HUMAN	RFA1_HUMAN	Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2	100.000000	0.007900	68121.000000	3.000000	4.000000	6.000000	Spectrum10002 scans:36109,	SLELVDESGEIR	S[+28]LELVDESGEIR	F	A	99.700000	79.100000	49.600000	59.600000	Dimethyl (+28)	1373.700000	2.000000	-0.002300	-1.700000	223.000000	234.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	sp|P33993|MCM7_HUMAN	MCM7_HUMAN	DNA replication licensing factor MCM7 OS=Homo sapiens GN=MCM7 PE=1 SV=4	100.000000	0.020200	81291.000000	4.000000	7.000000	7.000000	Nsco_Tails_biological_replicate1_apoptosis.35278.35278.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35278"	SLEQNIQLPAALLSR	S[+28]LEQNIQLPAALLSR	R	F	99.700000	72.300000	56.900000	61.900000	Dimethyl (+28)	1679.960000	2.000000	0.000200	0.120000	500.000000	514.000000	0.501100	0.128100	0.259467	2.184850	2.206200	2.997700	NaN	NaN	NaN	0.629760	0.185850	0.451168	2.541632	2.995723	4.481202	NaN	NaN	NaN	1.585696	1.590786	0.345374	0.460556	1.000000	0.927527	0.075947	0.106901	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1	sp|Q14980|NUMA1_HUMAN	NUMA1_HUMAN	Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1 PE=1 SV=2	100.000000	0.004480	238241.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.23543.23543.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23543"	SLGDVFLDSGR	S[+28]LGDVFLDSGR	D	K	98.900000	53.800000	52.200000	37.200000	Dimethyl (+28)	1192.610000	2.000000	0.000710	0.590000	1792.000000	1802.000000	0.615800	2.719767	12.272900	0.572950	0.147450	0.254350	NaN	NaN	NaN	0.773910	3.945885	21.340463	0.666512	0.200217	0.380223	NaN	NaN	NaN	0.720211	2.073051	0.047379	0.467725	0.052275	0.853764	0.075922	0.106802	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum51924 scans:23796,	SLGLQLPDGQR	S[+28]LGLQLPDGQR	R	R	99.600000	62.800000	49.900000	45.000000	Dimethyl (+28), Label:13C(6) (+6)	1216.690000	2.000000	-0.000770	-0.630000	407.000000	417.000000	1.309867	1.134800	1.610800	0.243600	0.953250	3.915550	2.036457	NaN	NaN	1.646182	1.646387	2.800904	0.283379	1.294385	5.853278	1.362042	NaN	NaN	1.097201	1.470386	0.118268	0.075841	0.130449	0.244807	0.005175	0.106704	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	E7ENZ3_HUMAN	E7ENZ3_HUMAN	T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=4 SV=1	100.000000	0.018400	53831.900000	4.000000	9.000000	14.000000	Spectrum48973 scans:20377,	SLHDALCVIR	S[+28]LHDALC[+57]VIR	R	N	99.600000	37.400000	49.600000	0.000000	Dimethyl (+28), Carbamidomethyl (+57)	1210.650000	3.000000	0.000500	0.410000	346.000000	355.000000	0.674200	0.301733	0.446800	2.278100	1.350450	0.407800	NaN	NaN	NaN	0.847304	0.437760	0.776908	2.650109	1.833729	0.609612	NaN	NaN	NaN	1.748707	1.135745	0.302996	0.350814	0.357253	1.000000	0.075797	0.106605	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Actin-related protein 2/3 complex subunit 1A OS=Homo sapiens GN=ARPC1A PE=1 SV=2	ARC1A_HUMAN	ARC1A_HUMAN	Actin-related protein 2/3 complex subunit 1A OS=Homo sapiens GN=ARPC1A PE=1 SV=2	100.000000	0.010500	41551.200000	2.000000	3.000000	8.000000	Spectrum69754 scans:44745,	SLHQFLLEPITC	S[+42]LHQFLLEPITC[+57]	M	H	99.700000	78.500000	49.400000	64.600000	Acetyl (+42), Carbamidomethyl (+57)	1498.750000	2.000000	-0.000810	-0.540000	2.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Actin-related protein 2/3 complex subunit 1A OS=Homo sapiens GN=ARPC1A PE=1 SV=2	ARC1A_HUMAN	ARC1A_HUMAN	Actin-related protein 2/3 complex subunit 1A OS=Homo sapiens GN=ARPC1A PE=1 SV=2	100.000000	0.007510	41551.200000	2.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.36919.36919.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36919"	SLHQFLLEPITCH	S[+42]LHQFLLEPITC[+57]H	M	A	99.700000	75.900000	53.600000	49.600000	Acetyl (+42), Carbamidomethyl (+57)	1635.810000	2.000000	-0.001800	-1.100000	2.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1	tr|J3KNF4|J3KNF4_HUMAN	J3KNF4_HUMAN	Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1	99.800000	0.002630	0.000000	1.000000	2.000000	2.000000	Spectrum53866 scans:25955,	SLIIDEGEDDLGR	S[+28]LIIDEGEDDLGR	R	G	99.700000	71.500000	48.800000	58.700000	Dimethyl (+28)	1458.720000	2.000000	-0.002600	-1.800000	0.000000	0.000000	0.939433	0.575033	0.722433	1.767900	0.268150	0.163000	NaN	NaN	NaN	1.180638	0.834268	1.256187	2.056594	0.364112	0.243665	NaN	NaN	NaN	1.618616	0.599190	0.168233	0.238016	1.000000	1.000000	0.075550	0.106311	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1	CCS_HUMAN	CCS_HUMAN	Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1	99.800000	0.002630	29022.100000	1.000000	2.000000	2.000000	Spectrum53861 scans:25949,	SLIIDEGEDDLGR	S[+28]LIIDEGEDDLGR	R	G	99.700000	67.100000	49.700000	50.300000	Dimethyl (+28), Label:13C(6) (+6)	1464.740000	2.000000	-0.000610	-0.420000	197.000000	209.000000	0.939433	0.575033	0.722433	1.767900	0.268150	0.163000	NaN	NaN	NaN	1.180638	0.834268	1.256187	2.056594	0.364112	0.243665	NaN	NaN	NaN	1.618616	0.599190	0.168233	0.238016	0.359685	0.383255	0.075525	0.106262	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Enolase-phosphatase E1 OS=Homo sapiens GN=ENOPH1 PE=4 SV=1	D6RA00_HUMAN	D6RA00_HUMAN	Enolase-phosphatase E1 OS=Homo sapiens GN=ENOPH1 PE=4 SV=1	100.000000	0.001320	19168.700000	1.000000	1.000000	1.000000	Spectrum72451 scans:48690,	SLITSFSELYLPSST	S[+28]LITSFSELYLPSST	Y	-	99.300000	63.600000	51.300000	42.100000	Dimethyl (+28)	1671.860000	2.000000	0.000660	0.390000	159.000000	173.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.089300	15036.300000	4.000000	11.000000	31.000000	Nsco_Tails_biological_replicate1_apoptosis.28441.28441.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28441"	SLLQDGEFSMDLR	SLLQDGEFSMDLR	D	T	98.900000	57.700000	51.100000	50.600000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1563.740000	2.000000	-0.008300	-5.300000	77.000000	89.000000	1.022500	0.546367	0.531700	17.426750	7.427600	0.439950	NaN	NaN	NaN	1.285032	0.792678	0.924535	20.272503	10.085681	0.657672	NaN	NaN	NaN	10.778767	5.439180	0.418638	0.449642	0.851010	0.722341	0.075402	0.106116	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.089300	15036.300000	4.000000	11.000000	31.000000	Nsco_Tails_biological_replicate1_apoptosis.26456.26456.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26456"	SLLQDGEFSMDLR	SLLQDGEFSMDLR	D	T	99.700000	68.200000	51.200000	58.700000	Dimethyl (+28), Oxidation (+16)	1553.740000	2.000000	-0.003300	-2.100000	77.000000	89.000000	1.022500	0.546367	0.531700	17.426750	7.427600	0.439950	NaN	NaN	NaN	1.285032	0.792678	0.924535	20.272503	10.085681	0.657672	NaN	NaN	NaN	10.778767	5.439180	0.418638	0.449642	0.930009	0.512232	0.075279	0.105922	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.049600	15036.300000	3.000000	12.000000	21.000000	NSco_TAILS_20150124_Protein_complex_100Kda.59425.59425.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=59425"	SLLQDGEFSMDLR	SLLQDGEFSMDLR	D	T	99.700000	72.400000	52.300000	57.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1547.750000	2.000000	-0.002400	-1.600000	77.000000	89.000000	1.022500	0.546367	0.531700	17.426750	7.427600	0.439950	NaN	NaN	NaN	1.285032	0.792678	0.924535	20.272503	10.085681	0.657672	NaN	NaN	NaN	10.778767	5.439180	0.418638	0.449642	0.929414	0.512063	0.075255	0.105873	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.049600	15036.300000	3.000000	12.000000	21.000000	NSco_TAILS_20150124_Protein_complex_100Kda.59470.59470.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=59470"	SLLQDGEFSMDLR	SLLQDGEFSMDLR	D	T	99.700000	90.600000	52.000000	75.800000	Dimethyl (+28)	1537.740000	2.000000	-0.002200	-1.400000	77.000000	89.000000	1.022500	0.546367	0.531700	17.426750	7.427600	0.439950	NaN	NaN	NaN	1.285032	0.792678	0.924535	20.272503	10.085681	0.657672	NaN	NaN	NaN	10.778767	5.439180	0.418638	0.449642	1.000000	0.511895	0.075230	0.105777	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Eukaryotic translation initiation factor 4B OS=Homo sapiens GN=EIF4B PE=1 SV=2	IF4B_HUMAN	IF4B_HUMAN	Eukaryotic translation initiation factor 4B OS=Homo sapiens GN=EIF4B PE=1 SV=2	100.000000	0.008960	69135.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.30059.30059.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30059"	SLLSALSLNEESLGNR	S[+28]LLSALSLNEESLGNR	D	R	98.900000	55.600000	56.600000	55.600000	Dimethyl (+28)	1729.920000	2.000000	-0.002900	-1.700000	149.000000	164.000000	1.298167	1.051167	0.595700	0.923100	0.235100	0.253400	NaN	NaN	NaN	1.631478	1.525051	1.035820	1.073840	0.319234	0.378803	NaN	NaN	NaN	1.352659	0.922142	0.129412	0.368635	0.463424	1.000000	0.075206	0.105728	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Eukaryotic translation initiation factor 4B OS=Homo sapiens GN=EIF4B PE=1 SV=2	IF4B_HUMAN	IF4B_HUMAN	Eukaryotic translation initiation factor 4B OS=Homo sapiens GN=EIF4B PE=1 SV=2	100.000000	0.008960	69135.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.30060.30060.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30060"	SLLSALSLNEESLGNR	S[+28]LLSALSLNEESLGNR	D	R	99.700000	69.400000	56.700000	66.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1739.930000	2.000000	-0.001800	-1.100000	149.000000	164.000000	1.298167	1.051167	0.595700	0.923100	0.235100	0.253400	NaN	NaN	NaN	1.631478	1.525051	1.035820	1.073840	0.319234	0.378803	NaN	NaN	NaN	1.352659	0.922142	0.129412	0.368635	0.148057	1.000000	0.075181	0.105680	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome activator complex subunit 2 OS=Homo sapiens GN=PSME2 PE=1 SV=4	PSME2_HUMAN	PSME2_HUMAN	Proteasome activator complex subunit 2 OS=Homo sapiens GN=PSME2 PE=1 SV=4	100.000000	0.005010	27384.200000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.29383.29383.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29383"	SLNVADLTSLR	S[+28]LNVADLTSLR	D	A	99.600000	63.000000	54.000000	41.600000	Dimethyl (+28)	1215.690000	2.000000	0.003100	2.500000	51.000000	61.000000	2.520367	1.616900	0.962233	0.453200	0.492000	1.083750	NaN	NaN	NaN	3.167484	2.345826	1.673158	0.527207	0.668070	1.620076	NaN	NaN	NaN	1.847345	1.506948	0.395001	0.323373	0.883723	1.000000	0.075157	0.105583	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3	PRS7_HUMAN	PRS7_HUMAN	26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3	100.000000	0.007900	48617.600000	3.000000	6.000000	6.000000	Spectrum19658 scans:13393,	SLPDLEGR	S[+28]LPDLEGR	F	T	98.900000	49.800000	47.100000	26.000000	Dimethyl (+28)	913.490000	2.000000	-0.000280	-0.310000	344.000000	351.000000	1.679033	0.873167	0.923167	2.451050	0.914300	0.345850	NaN	NaN	NaN	2.110134	1.266805	1.605228	2.851301	1.241496	0.517004	NaN	NaN	NaN	2.480718	1.254151	0.094404	0.006423	0.211070	0.022674	0.075133	0.105487	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2	RL15_HUMAN	RL15_HUMAN	60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2	100.000000	0.003950	24128.500000	1.000000	2.000000	3.000000	Spectrum4864 scans:22178,	SLQSVAEER	S[+28]LQSVAEER	R	A	98.900000	52.200000	47.800000	29.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1055.550000	2.000000	0.000290	0.270000	97.000000	105.000000	0.482933	0.129533	0.272333	0.970000	3.943750	5.431700	NaN	NaN	NaN	0.606929	0.187929	0.473541	1.128399	5.355082	8.119740	NaN	NaN	NaN	0.867664	2.771506	0.185841	0.477668	0.205765	0.515074	0.074962	0.105247	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2	RL15_HUMAN	RL15_HUMAN	60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2	100.000000	0.003950	24128.500000	1.000000	2.000000	3.000000	Spectrum4862 scans:22174,	SLQSVAEER	S[+28]LQSVAEER	R	A	99.000000	52.600000	47.700000	29.700000	Dimethyl (+28)	1045.540000	2.000000	0.000260	0.250000	97.000000	105.000000	0.482933	0.129533	0.272333	0.970000	3.943750	5.431700	NaN	NaN	NaN	0.606929	0.187929	0.473541	1.128399	5.355082	8.119740	NaN	NaN	NaN	0.867664	2.771506	0.185841	0.477668	0.205699	0.514914	0.074938	0.105199	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Dihydropyrimidinase-related protein 2 OS=Homo sapiens GN=DPYSL2 PE=1 SV=1	DPYL2_HUMAN	DPYL2_HUMAN	Dihydropyrimidinase-related protein 2 OS=Homo sapiens GN=DPYSL2 PE=1 SV=1	100.000000	0.005760	62276.000000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.18224.18224.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18224"	SLSGAQIDDNIPR	S[+28]LSGAQIDDNIPR	F	R	99.500000	60.500000	53.800000	49.700000	Dimethyl (+28)	1412.730000	2.000000	-0.000720	-0.510000	540.000000	552.000000	NaN	8.808600	NaN	0.436750	0.870550	1.824050	NaN	NaN	NaN	NaN	12.779669	NaN	0.508070	1.182090	2.726736	NaN	NaN	NaN	0.508070	6.980879	NaN	0.425093	NaN	1.000000	1.000000	0.105152	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Caprin-1 OS=Homo sapiens GN=CAPRIN1	sp|Q14444-2|CAPR1_HUMAN	CAPR1_HUMAN	Isoform 2 of Caprin-1 OS=Homo sapiens GN=CAPRIN1	99.900000	0.002630	76841.900000	1.000000	2.000000	2.000000	Spectrum9469 scans:34413,	SLTPVAQADPLVR	S[+28]LTPVAQADPLVR	H	R	99.700000	59.900000	51.000000	43.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1403.800000	3.000000	-0.001200	-0.820000	343.000000	355.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	GA binding protein transcription factor beta subunit 1 transcript variant gamma-2 OS=Homo sapiens GN=GABPB1 PE=2 SV=1	H9ZYI9_HUMAN	H9ZYI9_HUMAN	GA binding protein transcription factor beta subunit 1 transcript variant gamma-2 OS=Homo sapiens GN=GABPB1 PE=2 SV=1	100.000000	0.002630	36831.900000	1.000000	1.000000	2.000000	Spectrum72535 scans:48885,	SLVDLGKKLLEAAR	S[+42]LVDLGKKLLEAAR	M	A	99.600000	37.600000	47.300000	22.900000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1624.050000	3.000000	-0.001200	-0.760000	2.000000	15.000000	38.725300	18.622100	0.400200	2283.116850	1102.839550	0.431850	NaN	NaN	NaN	48.668217	27.017265	0.695879	2655.945151	1497.507706	0.645564	NaN	NaN	NaN	1352.306684	762.262485	0.000000	0.000000	0.000000	0.000000	0.074841	0.105008	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	GA binding protein transcription factor beta subunit 1 transcript variant gamma-2 OS=Homo sapiens GN=GABPB1 PE=2 SV=1	H9ZYI9_HUMAN	H9ZYI9_HUMAN	GA binding protein transcription factor beta subunit 1 transcript variant gamma-2 OS=Homo sapiens GN=GABPB1 PE=2 SV=1	99.900000	0.005010	36831.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46146.46146.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46146"	SLVDLGKKLLEAAR	S[+42]LVDLGKKLLEAAR	M	A	99.700000	77.600000	55.100000	57.400000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1636.010000	2.000000	-0.008200	-5.000000	2.000000	15.000000	38.725300	18.622100	0.400200	2283.116850	1102.839550	0.431850	NaN	NaN	NaN	48.668217	27.017265	0.695879	2655.945151	1497.507706	0.645564	NaN	NaN	NaN	1352.306684	762.262485	0.000000	0.000000	0.000000	0.000000	0.074817	0.104913	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	GA binding protein transcription factor beta subunit 1 transcript variant gamma-2 OS=Homo sapiens GN=GABPB1 PE=2 SV=1	H9ZYI9_HUMAN	H9ZYI9_HUMAN	GA binding protein transcription factor beta subunit 1 transcript variant gamma-2 OS=Homo sapiens GN=GABPB1 PE=2 SV=1	99.900000	0.005010	36831.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.46145.46145.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46145"	SLVDLGKKLLEAAR	S[+42]LVDLGKKLLEAAR	M	A	99.700000	82.700000	55.500000	61.400000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28)	1609.980000	2.000000	-0.001100	-0.700000	2.000000	15.000000	38.725300	18.622100	0.400200	2283.116850	1102.839550	0.431850	NaN	NaN	NaN	48.668217	27.017265	0.695879	2655.945151	1497.507706	0.645564	NaN	NaN	NaN	1352.306684	762.262485	0.000000	0.000000	0.000000	0.000000	0.074793	0.104818	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	PA2G4_HUMAN	PA2G4_HUMAN	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	100.000000	0.023700	43768.700000	6.000000	9.000000	18.000000	Spectrum11594 scans:41406,	SLVEASSSGVSVL	S[+28]LVEASSSGVSVL	R	S	99.000000	55.500000	50.000000	35.200000	Dimethyl (+28)	1261.680000	2.000000	0.000140	0.110000	34.000000	46.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform A of Protein CutA OS=Homo sapiens GN=CUTA	sp|O60888|CUTA_HUMAN	CUTA_HUMAN	Protein CutA OS=Homo sapiens GN=CUTA PE=1 SV=2	100.000000	0.006590	19098.100000	2.000000	3.000000	5.000000	Spectrum64821 scans:38978,	SLVPALTDFVR	S[+28]LVPALTDFVR	S	S	99.000000	61.500000	49.800000	40.200000	Dimethyl (+28), Label:13C(6) (+6)	1250.730000	2.000000	0.001100	0.900000	128.000000	138.000000	0.338433	3.440433	11.117267	NaN	3.184150	NaN	NaN	NaN	NaN	0.425328	4.991440	19.331015	NaN	4.323647	NaN	NaN	NaN	NaN	0.425328	4.657544	NaN	0.045561	NaN	0.234217	1.000000	0.104723	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform A of Protein CutA OS=Homo sapiens GN=CUTA	sp|O60888|CUTA_HUMAN	CUTA_HUMAN	Protein CutA OS=Homo sapiens GN=CUTA PE=1 SV=2	100.000000	0.006590	19098.100000	2.000000	3.000000	5.000000	Spectrum64822 scans:38979,	SLVPALTDFVR	S[+28]LVPALTDFVR	S	S	99.500000	61.000000	50.000000	42.200000	Dimethyl (+28)	1244.710000	2.000000	-0.000720	-0.580000	128.000000	138.000000	0.338433	3.440433	11.117267	NaN	3.184150	NaN	NaN	NaN	NaN	0.425328	4.991440	19.331015	NaN	4.323647	NaN	NaN	NaN	NaN	0.425328	4.657544	NaN	0.045561	NaN	0.384663	1.000000	0.104676	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2	sp|P40938-2|RFC3_HUMAN	RFC3_HUMAN	Isoform 2 of Replication factor C subunit 3 OS=Homo sapiens GN=RFC3	100.000000	0.004480	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.25190.25190.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25190"	SLWVDKYRPC	S[+42]LWVDKYRPC[+57]	M	S	99.300000	54.800000	53.000000	37.500000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10), Carbamidomethyl (+57)	1410.710000	2.000000	-0.001000	-0.720000	0.000000	0.000000	6.391800	21.321267	3.295500	67.162950	11.463100	0.164650	NaN	NaN	NaN	8.032927	30.933262	5.730308	78.130522	15.565347	0.246132	NaN	NaN	NaN	43.081725	23.249305	0.069170	0.000000	0.222448	0.000000	0.074696	0.104628	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1	sp|Q12904|AIMP1_HUMAN	AIMP1_HUMAN	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2	100.000000	0.012500	34335.000000	2.000000	4.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.29797.29797.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29797"	SLYVEEVDVGEIAPR	S[+28]LYVEEVDVGEIAPR	D	T	98.700000	59.000000	55.900000	53.100000	Dimethyl (+28)	1702.890000	2.000000	0.007600	4.400000	173.000000	187.000000	0.358500	0.195767	0.579800	1.918550	6.791650	3.547100	NaN	NaN	NaN	0.450547	0.284022	1.008172	2.231845	9.222147	5.302489	NaN	NaN	NaN	1.341196	4.753084	0.373189	0.480400	1.000000	0.548893	0.074576	0.104534	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL1 PE=1 SV=3	TXNL1_HUMAN	TXNL1_HUMAN	Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL1 PE=1 SV=3	99.300000	0.002330	32233.400000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.29338.29338.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29338"	SMDFEEAER	S[+28]MDFEEAER	R	S	98.800000	41.600000	41.900000	36.100000	Dimethyl (+28)	1140.470000	2.000000	-0.001700	-1.500000	203.000000	211.000000	0.528000	0.246933	0.465600	1.226200	30.049300	6.172900	NaN	NaN	NaN	0.663567	0.358255	0.809598	1.426436	40.802906	9.227745	NaN	NaN	NaN	1.045001	20.580580	0.222806	0.477203	0.521684	0.545060	0.074552	0.104439	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2	sp|P34897-3|GLYM_HUMAN	GLYM_HUMAN	Isoform 3 of Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2	100.000000	0.006590	53438.500000	2.000000	4.000000	5.000000	Spectrum23745 scans:2169,	SNAAQTQTGEANR	S[+28]NAAQTQTGEANR	H	G	99.700000	104.000000	47.600000	74.800000	Dimethyl (+28), Label:13C(6) (+6)	1380.670000	2.000000	-0.002200	-1.600000	8.000000	20.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	sp|O00410|IPO5_HUMAN	IPO5_HUMAN	Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4	100.000000	0.010000	123614.200000	4.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.8483.8483.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8483"	SNAVAGESALDR	S[+28]NAVAGESALDR	D	M	99.700000	74.400000	51.400000	55.600000	Dimethyl (+28)	1216.600000	2.000000	-0.002700	-2.200000	334.000000	345.000000	0.660000	0.160467	0.207133	0.385150	0.186050	0.501750	0.317671	1.621914	16.773043	0.829458	0.232808	0.360169	0.448044	0.252631	0.750056	0.212468	0.690758	8.037686	0.496657	0.392066	0.109836	0.119763	0.113703	0.136704	0.005080	0.007111	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.040300	92453.700000	3.000000	7.000000	9.000000	Nsco_Tails_biological_replicate2_apoptosis.17797.17797.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17797"	SNEFSVIADPR	S[+28]NEFSVIADPR	D	G	98.700000	55.900000	51.900000	45.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1271.630000	2.000000	-0.004700	-3.700000	227.000000	237.000000	0.632167	0.346800	0.530233	0.751850	1.060350	1.468250	NaN	NaN	NaN	0.794479	0.503143	0.921985	0.874626	1.439813	2.194858	NaN	NaN	NaN	0.834552	0.971478	0.030546	0.285978	0.031612	0.312451	0.074480	0.104251	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum42237 scans:12620,	SNELGDVGVH	S[+28]NELGDVGVH	R	C	99.700000	62.100000	45.700000	47.700000	Dimethyl (+28)	1053.510000	2.000000	-0.000160	-0.150000	65.000000	74.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum60510 scans:33889,	SNELGDVGVHCVLQGLQTPS	S[+28]NELGDVGVHC[+57]VLQGLQTPS	R	C	98.700000	97.300000	51.800000	90.200000	Dimethyl (+28), Carbamidomethyl (+57)	2137.060000	2.000000	0.008900	4.100000	65.000000	84.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Short of Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1	sp|P54886|P5CS_HUMAN	P5CS_HUMAN	Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2	99.800000	0.001320	87284.900000	1.000000	1.000000	1.000000	Spectrum62287 scans:36119,	SNIPFITVPLSR	S[+28]NIPFITVPLSR	W	T	99.500000	61.600000	50.600000	41.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1380.800000	2.000000	-0.001500	-1.100000	44.000000	55.000000	0.484367	0.152600	0.318033	0.955200	0.464850	0.486850	NaN	NaN	NaN	0.608730	0.221395	0.553005	1.111182	0.631204	0.727782	NaN	NaN	NaN	0.859956	0.426299	0.180945	0.285241	0.205998	1.000000	0.074193	0.104110	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform Short of Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1	sp|P54886|P5CS_HUMAN	P5CS_HUMAN	Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2	99.800000	0.015000	87284.900000	1.000000	3.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.34220.34220.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34220"	SNIPFITVPLSR	S[+28]NIPFITVPLSR	W	T	99.500000	57.600000	54.900000	38.900000	Dimethyl (+28), Label:13C(6) (+6)	1376.810000	2.000000	0.001100	0.800000	44.000000	55.000000	0.484367	0.152600	0.318033	0.955200	0.464850	0.486850	NaN	NaN	NaN	0.608730	0.221395	0.553005	1.111182	0.631204	0.727782	NaN	NaN	NaN	0.859956	0.426299	0.180945	0.285241	0.981064	1.000000	0.074122	0.103970	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform Short of Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1	sp|P54886|P5CS_HUMAN	P5CS_HUMAN	Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens GN=ALDH18A1 PE=1 SV=2	99.800000	0.015000	87284.900000	1.000000	3.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.34326.34326.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34326"	SNIPFITVPLSR	S[+28]NIPFITVPLSR	W	T	99.700000	86.300000	55.100000	65.300000	Dimethyl (+28)	1370.790000	2.000000	-0.000030	-0.022000	44.000000	55.000000	0.484367	0.152600	0.318033	0.955200	0.464850	0.486850	NaN	NaN	NaN	0.608730	0.221395	0.553005	1.111182	0.631204	0.727782	NaN	NaN	NaN	0.859956	0.426299	0.180945	0.285241	0.979533	1.000000	0.074098	0.103877	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of Cullin-3 OS=Homo sapiens GN=CUL3	sp|Q13618-3|CUL3_HUMAN	CUL3_HUMAN	Isoform 3 of Cullin-3 OS=Homo sapiens GN=CUL3	99.100000	0.005270	81076.800000	1.000000	2.000000	4.000000	Spectrum34552 scans:3754,	SNLSKGTGSR	S[+42]NLSKGTGSR	M	K	98.700000	51.600000	49.000000	30.700000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1085.610000	2.000000	0.000034	0.031000	2.000000	11.000000	43.283433	NaN	NaN	NaN	NaN	0.417350	NaN	NaN	NaN	54.396674	NaN	NaN	NaN	NaN	0.623888	NaN	NaN	NaN	54.396674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of Cullin-3 OS=Homo sapiens GN=CUL3	sp|Q13618-3|CUL3_HUMAN	CUL3_HUMAN	Isoform 3 of Cullin-3 OS=Homo sapiens GN=CUL3	99.100000	0.005270	81076.800000	1.000000	2.000000	4.000000	Spectrum24453 scans:3343,	SNLSKGTGSR	S[+42]NLSKGTGSR	M	K	99.700000	78.600000	49.000000	41.400000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1093.580000	2.000000	-0.000140	-0.120000	2.000000	11.000000	43.283433	NaN	NaN	NaN	NaN	0.417350	NaN	NaN	NaN	54.396674	NaN	NaN	NaN	NaN	0.623888	NaN	NaN	NaN	54.396674	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Lysosomal alpha-mannosidase OS=Homo sapiens GN=MAN2B1 PE=1 SV=3	MA2B1_HUMAN	MA2B1_HUMAN	Lysosomal alpha-mannosidase OS=Homo sapiens GN=MAN2B1 PE=1 SV=3	100.000000	0.002630	113726.900000	1.000000	2.000000	2.000000	Spectrum28966 scans:12277,	SPALTIENEHIR	S[+28]PALTIENEHIR	W	A	99.700000	78.200000	50.800000	37.800000	Dimethyl (+28)	1406.750000	3.000000	-0.000290	-0.200000	602.000000	613.000000	2.871900	3.716600	2.013333	0.463100	2.059850	86.641450	NaN	2.541857	NaN	3.609275	5.392108	3.500840	0.538723	2.796999	129.518574	NaN	1.082553	NaN	2.073999	3.090553	0.405674	0.132428	1.000000	0.166374	0.074003	0.007073	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Lysosomal alpha-mannosidase OS=Homo sapiens GN=MAN2B1 PE=1 SV=3	sp|O00754-2|MA2B1_HUMAN	MA2B1_HUMAN	Isoform 2 of Lysosomal alpha-mannosidase OS=Homo sapiens GN=MAN2B1	100.000000	0.002630	0.000000	1.000000	2.000000	2.000000	Spectrum28954 scans:12238,	SPALTIENEHIR	S[+28]PALTIENEHIR	W	A	99.700000	58.700000	51.000000	35.300000	Dimethyl (+28), Label:13C(6) (+6)	1412.770000	3.000000	-0.000560	-0.390000	0.000000	0.000000	2.871900	3.716600	2.013333	0.463100	2.059850	86.641450	NaN	2.541857	NaN	3.609275	5.392108	3.500840	0.538723	2.796999	129.518574	NaN	1.082553	NaN	2.073999	3.090553	0.405674	0.132428	1.000000	0.166313	0.073979	0.007060	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2	DCUP_HUMAN	DCUP_HUMAN	Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2	100.000000	0.007900	40769.200000	2.000000	6.000000	6.000000	Spectrum53164 scans:25181,	SPEACCELTLQPLR	S[+28]PEAC[+57]C[+57]ELTLQPLR	R	R	98.600000	55.300000	49.900000	48.500000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6) (+6)	1706.840000	2.000000	-0.003600	-2.100000	61.000000	74.000000	1.465000	6.712600	4.157967	1.945350	0.242750	0.736000	NaN	NaN	NaN	1.841146	9.738756	7.229989	2.263022	0.329622	1.100232	NaN	NaN	NaN	2.052084	5.034189	0.065210	0.478461	0.103656	1.000000	0.073956	0.103459	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2	DCUP_HUMAN	DCUP_HUMAN	Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2	100.000000	0.007900	40769.200000	2.000000	6.000000	6.000000	Spectrum53156 scans:25172,	SPEACCELTLQPLR	S[+28]PEAC[+57]C[+57]ELTLQPLR	R	R	99.400000	65.900000	48.900000	56.000000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57)	1700.820000	2.000000	-0.003700	-2.200000	61.000000	74.000000	1.465000	6.712600	4.157967	1.945350	0.242750	0.736000	NaN	NaN	NaN	1.841146	9.738756	7.229989	2.263022	0.329622	1.100232	NaN	NaN	NaN	2.052084	5.034189	0.065210	0.478461	0.103513	1.000000	0.073932	0.103412	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.023000	95322.100000	6.000000	7.000000	8.000000	Nsco_Tails_biological_replicate1_apoptosis.26396.26396.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26396"	SPGHVDFSSEVTAALR	S[+28]PGHVDFSSEVTAALR	D	V	99.600000	85.100000	54.900000	74.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1709.860000	3.000000	0.000620	0.360000	105.000000	120.000000	3.745733	0.563700	0.223867	0.748600	0.431100	0.579350	NaN	NaN	NaN	4.707469	0.817826	0.389266	0.870845	0.585376	0.866059	NaN	NaN	NaN	2.789157	0.701601	0.383547	0.104511	0.400876	0.315901	0.073908	0.103320	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum56097 scans:28510,	SPGHVDFSSEVTAALR	S[+28]PGHVDFSSEVTAALR	D	V	99.500000	39.700000	51.400000	33.700000	Dimethyl (+28), Label:13C(6) (+6)	1705.870000	3.000000	0.001500	0.870000	105.000000	120.000000	3.745733	0.563700	0.223867	0.748600	0.431100	0.579350	NaN	NaN	NaN	4.707469	0.817826	0.389266	0.870845	0.585376	0.866059	NaN	NaN	NaN	2.789157	0.701601	0.383547	0.104511	0.476004	0.158226	0.073814	0.103274	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.044800	95322.100000	6.000000	8.000000	10.000000	Nsco_Tails_biological_replicate2_apoptosis.23226.23226.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=23226"	SPGHVDFSSEVTAALR	S[+28]PGHVDFSSEVTAALR	D	V	98.800000	73.500000	54.700000	62.500000	Dimethyl (+28)	1699.860000	3.000000	0.002200	1.300000	105.000000	120.000000	3.745733	0.563700	0.223867	0.748600	0.431100	0.579350	NaN	NaN	NaN	4.707469	0.817826	0.389266	0.870845	0.585376	0.866059	NaN	NaN	NaN	2.789157	0.701601	0.383547	0.104511	0.569738	1.000000	0.073791	0.103090	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Hypoxanthine-guanine phosphoribosyltransferase OS=Homo sapiens GN=HPRT1 PE=1 SV=2	HPRT_HUMAN	HPRT_HUMAN	Hypoxanthine-guanine phosphoribosyltransferase OS=Homo sapiens GN=HPRT1 PE=1 SV=2	100.000000	0.007900	24562.200000	3.000000	4.000000	6.000000	Spectrum71476 scans:47140,	SPGVVISDDEPGYDLDLF	S[+28]PGVVISDDEPGYDLDLF	R	C	99.700000	65.500000	48.400000	59.800000	Dimethyl (+28)	1964.920000	2.000000	-0.001900	-0.990000	5.000000	22.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Hypoxanthine-guanine phosphoribosyltransferase OS=Homo sapiens GN=HPRT1 PE=1 SV=2	HPRT_HUMAN	HPRT_HUMAN	Hypoxanthine-guanine phosphoribosyltransferase OS=Homo sapiens GN=HPRT1 PE=1 SV=2	100.000000	0.007900	24562.200000	3.000000	4.000000	6.000000	Spectrum70759 scans:46067,	SPGVVISDDEPGYDLDLFCIPNHYAEDLER	S[+28]PGVVISDDEPGYDLDLFC[+57]IPNHYAEDLER	R	V	99.700000	46.200000	49.800000	35.200000	Dimethyl (+28), Carbamidomethyl (+57)	3462.590000	3.000000	-0.001800	-0.520000	5.000000	34.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 3 of Trafficking protein particle complex subunit 11 OS=Homo sapiens GN=TRAPPC11	sp|Q7Z392-4|TPC11_HUMAN	TPC11_HUMAN	Isoform 4 of Trafficking protein particle complex subunit 11 OS=Homo sapiens GN=TRAPPC11	95.500000	0.004480	115968.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.29434.29434.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29434"	SPTQWDFPVELCCR	S[+28]PTQWDFPVELC[+57]C[+57]R	M	P	98.800000	50.700000	48.400000	49.300000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57)	1821.810000	2.000000	-0.005700	-3.100000	2.000000	15.000000	NaN	NaN	NaN	0.574300	0.193000	0.335350	NaN	NaN	NaN	NaN	NaN	NaN	0.668082	0.262068	0.501308	NaN	NaN	NaN	0.668082	0.262068	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum49326 scans:20789,	SPVLHFYVR	S[+28]PVLHFYVR	M	P	99.500000	37.300000	49.600000	14.500000	Dimethyl (+28), Label:13C(6) (+6)	1150.660000	3.000000	-0.000420	-0.360000	2.000000	10.000000	NaN	1.276067	NaN	0.693800	0.482700	0.696250	NaN	NaN	NaN	NaN	1.851340	NaN	0.807096	0.655442	1.040810	NaN	NaN	NaN	0.807096	1.253391	NaN	0.283380	NaN	0.311278	1.000000	0.102815	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2	sp|P07108|ACBP_HUMAN	ACBP_HUMAN	Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2	97.400000	0.011500	10026.800000	1.000000	3.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.24429.24429.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24429"	SQAEFEKAAEEVR	S[+42]QAEFEKAAEEVR	M	H	99.700000	82.500000	53.100000	71.000000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1580.780000	2.000000	-0.002800	-1.800000	2.000000	14.000000	267.531533	142.914300	0.528067	0.012400	NaN	11.412750	NaN	NaN	NaN	336.221608	207.342538	0.918217	0.014425	NaN	17.060692	NaN	NaN	NaN	168.118016	207.342538	0.499082	NaN	0.526067	NaN	0.073579	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2	sp|P07108|ACBP_HUMAN	ACBP_HUMAN	Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2	98.000000	0.009440	10026.800000	1.000000	3.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.46361.46361.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46361"	SQAEFEKAAEEVR	S[+42]QAEFEKAAEEVR	M	H	99.700000	71.600000	54.500000	62.800000	Acetyl (+42), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1572.800000	2.000000	-0.001300	-0.840000	2.000000	14.000000	267.531533	142.914300	0.528067	0.012400	NaN	11.412750	NaN	NaN	NaN	336.221608	207.342538	0.918217	0.014425	NaN	17.060692	NaN	NaN	NaN	168.118016	207.342538	0.499082	NaN	0.859461	NaN	0.073556	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2	sp|P07108|ACBP_HUMAN	ACBP_HUMAN	Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2	98.000000	0.009440	10026.800000	1.000000	3.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.46336.46336.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46336"	SQAEFEKAAEEVR	S[+42]QAEFEKAAEEVR	M	H	99.700000	109.000000	52.200000	97.200000	Acetyl (+42), Dimethyl (+28)	1562.750000	2.000000	-0.003000	-1.900000	2.000000	14.000000	267.531533	142.914300	0.528067	0.012400	NaN	11.412750	NaN	NaN	NaN	336.221608	207.342538	0.918217	0.014425	NaN	17.060692	NaN	NaN	NaN	168.118016	207.342538	0.499082	NaN	0.858609	NaN	0.073533	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	sp|P60660-2|MYL6_HUMAN	MYL6_HUMAN	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	100.000000	0.010500	16942.800000	4.000000	7.000000	8.000000	Spectrum15082 scans:4065,	SQCGDVMR	S[+28]QC[+57]GDVMR	Y	A	99.000000	51.800000	40.900000	36.300000	Dimethyl (+28), Carbamidomethyl (+57)	979.420000	2.000000	-0.000027	-0.027000	30.000000	37.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	UTP--glucose-1-phosphate uridylyltransferase (Fragment) OS=Homo sapiens GN=UGP2 PE=4 SV=1	C9J3M0_HUMAN	C9J3M0_HUMAN	UTP--glucose-1-phosphate uridylyltransferase (Fragment) OS=Homo sapiens GN=UGP2 PE=4 SV=1	98.800000	0.003950	4348.900000	1.000000	3.000000	3.000000	Spectrum23183 scans:15482,	SQDGASQFQEVIR	S[+42]QDGASQFQEVIR	M	Q	99.700000	82.600000	48.200000	68.500000	Acetyl (+42), Label:13C(6) (+6)	1511.730000	2.000000	-0.000700	-0.460000	2.000000	14.000000	0.285467	0.817100	3.308333	0.784150	0.305400	0.389500	NaN	NaN	NaN	0.358762	1.185463	5.752623	0.912200	0.414692	0.582256	NaN	NaN	NaN	0.635481	0.800077	0.261452	0.285771	0.441693	1.000000	0.073393	0.102360	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	UTP--glucose-1-phosphate uridylyltransferase (Fragment) OS=Homo sapiens GN=UGP2 PE=4 SV=1	C9J3M0_HUMAN	C9J3M0_HUMAN	UTP--glucose-1-phosphate uridylyltransferase (Fragment) OS=Homo sapiens GN=UGP2 PE=4 SV=1	98.800000	0.003950	4348.900000	1.000000	3.000000	3.000000	Spectrum23180 scans:15466,	SQDGASQFQEVIR	S[+42]QDGASQFQEVIR	M	Q	99.700000	84.300000	47.000000	75.200000	Acetyl (+42)	1505.710000	2.000000	-0.001200	-0.800000	2.000000	14.000000	0.285467	0.817100	3.308333	0.784150	0.305400	0.389500	NaN	NaN	NaN	0.358762	1.185463	5.752623	0.912200	0.414692	0.582256	NaN	NaN	NaN	0.635481	0.800077	0.261452	0.285771	1.000000	1.000000	0.073369	0.102315	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	UTP--glucose-1-phosphate uridylyltransferase (Fragment) OS=Homo sapiens GN=UGP2 PE=4 SV=1	C9J3M0_HUMAN	C9J3M0_HUMAN	UTP--glucose-1-phosphate uridylyltransferase (Fragment) OS=Homo sapiens GN=UGP2 PE=4 SV=1	98.800000	0.003950	4348.900000	1.000000	3.000000	3.000000	Spectrum23181 scans:15469,	SQDGASQFQEVIR	S[+42]QDGASQFQEVIR	M	Q	99.700000	89.600000	47.300000	76.300000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1515.720000	2.000000	-0.000920	-0.610000	2.000000	14.000000	0.285467	0.817100	3.308333	0.784150	0.305400	0.389500	NaN	NaN	NaN	0.358762	1.185463	5.752623	0.912200	0.414692	0.582256	NaN	NaN	NaN	0.635481	0.800077	0.261452	0.285771	1.000000	1.000000	0.073323	0.102224	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	sp|P68402|PA1B2_HUMAN	PA1B2_HUMAN	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	100.000000	0.014500	25551.500000	4.000000	11.000000	11.000000	Spectrum42420 scans:12825,	SQGDSNPAAIPH	S[+42]QGDSNPAAIPH	M	A	99.100000	48.800000	44.000000	38.400000	Acetyl (+42)	1234.560000	2.000000	-0.000950	-0.770000	2.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	sp|P68402|PA1B2_HUMAN	PA1B2_HUMAN	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	100.000000	0.014500	25551.500000	4.000000	11.000000	11.000000	Spectrum48284 scans:19581,	SQGDSNPAAIPHAAEDIQGDDR	S[+42]QGDSNPAAIPHAAEDIQGDDR	M	W	99.700000	65.400000	45.300000	61.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	2315.030000	2.000000	0.001100	0.460000	2.000000	23.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	sp|P68402|PA1B2_HUMAN	PA1B2_HUMAN	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	100.000000	0.014500	25551.500000	4.000000	11.000000	11.000000	Spectrum48311 scans:19614,	SQGDSNPAAIPHAAEDIQGDDR	S[+42]QGDSNPAAIPHAAEDIQGDDR	M	W	99.700000	76.800000	45.000000	74.800000	Acetyl (+42)	2305.020000	2.000000	0.000550	0.240000	2.000000	23.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	sp|P68402|PA1B2_HUMAN	PA1B2_HUMAN	Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1	100.000000	0.014500	25551.500000	4.000000	11.000000	11.000000	Spectrum48348 scans:19659,	SQGDSNPAAIPHAAEDIQGDDR	S[+42]QGDSNPAAIPHAAEDIQGDDR	M	W	99.700000	80.800000	46.300000	78.400000	Acetyl (+42), Label:13C(6) (+6)	2311.040000	2.000000	-0.000300	-0.130000	2.000000	23.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2	ADRM1_HUMAN	ADRM1_HUMAN	Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2	99.700000	0.002330	42136.200000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.11246.11246.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11246"	SQSAAVTPSSTTSSTR	S[+28]QSAAVTPSSTTSSTR	R	A	99.700000	63.400000	52.700000	49.300000	Dimethyl (+28)	1594.780000	2.000000	-0.004000	-2.500000	211.000000	226.000000	0.736533	0.213833	0.548700	NaN	NaN	NaN	NaN	NaN	NaN	0.925642	0.310233	0.954095	NaN	NaN	NaN	NaN	NaN	NaN	0.925642	0.310233	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.030300	62047.800000	7.000000	12.000000	23.000000	Spectrum21499 scans:3516,	SRSGGGGGGGLGSGGSIR	SRSGGGGGGGLGSGGSIR	L	S	99.700000	46.100000	48.700000	30.000000		1474.720000	3.000000	0.000110	0.076000	12.000000	29.000000	7.497767	1.923700	NaN	NaN	30.093750	NaN	NaN	NaN	NaN	9.422856	2.790937	NaN	NaN	40.863263	NaN	NaN	NaN	NaN	9.422856	21.827100	NaN	0.326732	NaN	0.368823	1.000000	0.101864	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.027700	40405.300000	7.000000	17.000000	21.000000	Spectrum61929 scans:35688,	SSDFAKIINNTENLVR	S[+28]SDFAKIINNTENLVR	R	E	99.000000	36.000000	53.300000	25.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1894.030000	3.000000	0.000180	0.092000	46.000000	61.000000	6.417400	3.289367	0.532367	0.654900	2.896900	4.151950	NaN	NaN	NaN	8.065100	4.772270	0.925694	0.761844	3.933600	6.206667	NaN	NaN	NaN	4.413472	4.352935	0.440042	0.061139	0.447653	0.068993	0.073160	0.101819	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	sp|Q9Y617|SERC_HUMAN	SERC_HUMAN	Phosphoserine aminotransferase OS=Homo sapiens GN=PSAT1 PE=1 SV=2	100.000000	0.027700	40405.300000	7.000000	17.000000	21.000000	Spectrum61944 scans:35706,	SSDFAKIINNTENLVR	S[+28]SDFAKIINNTENLVR	R	E	99.700000	55.400000	53.300000	43.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1886.050000	3.000000	-0.001400	-0.750000	46.000000	61.000000	6.417400	3.289367	0.532367	0.654900	2.896900	4.151950	NaN	NaN	NaN	8.065100	4.772270	0.925694	0.761844	3.933600	6.206667	NaN	NaN	NaN	4.413472	4.352935	0.440042	0.061139	0.490506	0.068971	0.073137	0.101774	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Calcium-regulated heat stable protein 1 OS=Homo sapiens GN=CARHSP1 PE=1 SV=2	H3BNU9_HUMAN	H3BNU9_HUMAN	Calcium-regulated heat stable protein 1 (Fragment) OS=Homo sapiens GN=CARHSP1 PE=4 SV=1	100.000000	0.011800	14197.900000	2.000000	4.000000	5.000000	NSco_TAILS_20150124_Protein_complex_100Kda.43197.43197.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43197"	SSEPPPPPQPPTHQASVGLLDTPR	S[+42]SEPPPPPQPPTHQASVGLLDTPR	M	S	99.100000	66.000000	58.400000	65.500000	Acetyl (+42), Label:13C(6)15N(4) (+10)	2556.280000	3.000000	-0.007000	-2.800000	2.000000	25.000000	0.665833	0.214767	0.325100	NaN	1.072000	NaN	NaN	NaN	NaN	0.836789	0.311587	0.565293	NaN	1.455632	NaN	NaN	NaN	NaN	0.836789	0.883609	NaN	0.365753	NaN	1.000000	1.000000	0.101685	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Calcium-regulated heat stable protein 1 OS=Homo sapiens GN=CARHSP1 PE=1 SV=2	H3BNU9_HUMAN	H3BNU9_HUMAN	Calcium-regulated heat stable protein 1 (Fragment) OS=Homo sapiens GN=CARHSP1 PE=4 SV=1	100.000000	0.011800	14197.900000	2.000000	4.000000	5.000000	NSco_TAILS_20150124_Protein_complex_100Kda.43265.43265.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43265"	SSEPPPPPQPPTHQASVGLLDTPR	S[+42]SEPPPPPQPPTHQASVGLLDTPR	M	S	99.700000	68.300000	58.400000	68.300000	Acetyl (+42)	2546.270000	2.000000	-0.003300	-1.300000	2.000000	25.000000	0.665833	0.214767	0.325100	NaN	1.072000	NaN	NaN	NaN	NaN	0.836789	0.311587	0.565293	NaN	1.455632	NaN	NaN	NaN	NaN	0.836789	0.883609	NaN	0.365753	NaN	1.000000	1.000000	0.101640	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.162000	15036.300000	9.000000	26.000000	123.000000	Spectrum56468 scans:28961,	SSFYVNGLTLGGQK	S[+28]SFYVNGLTLGGQK	R	C	99.700000	67.800000	51.600000	47.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1533.830000	2.000000	-0.001700	-1.100000	57.000000	70.000000	10.006700	4.136967	0.458267	16.912200	10.017900	0.582050	NaN	NaN	NaN	12.575971	6.001983	0.796847	19.673928	13.602960	0.870095	NaN	NaN	NaN	16.124949	9.802471	0.000000	0.155865	0.000000	0.194551	0.073045	0.101596	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.162000	15036.300000	9.000000	26.000000	123.000000	Spectrum56462 scans:28954,	SSFYVNGLTLGGQK	S[+28]SFYVNGLTLGGQK	R	C	99.700000	100.000000	51.700000	78.900000	Dimethyl (+28), Dimethyl:2H(4) (+32)	1529.840000	2.000000	0.002000	1.300000	57.000000	70.000000	10.006700	4.136967	0.458267	16.912200	10.017900	0.582050	NaN	NaN	NaN	12.575971	6.001983	0.796847	19.673928	13.602960	0.870095	NaN	NaN	NaN	16.124949	9.802471	0.000000	0.155865	0.000000	0.194482	0.073022	0.101373	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.190000	15036.300000	6.000000	16.000000	82.000000	Nsco_Tails_biological_replicate_3_fraction6A.28989.28989.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28989"	SSFYVNGLTLGGQK	S[+28]SFYVNGLTLGGQK	R	C	99.700000	79.800000	55.400000	65.800000	Dimethyl (+28), Dimethyl (+28)	1525.810000	2.000000	-0.002400	-1.600000	57.000000	70.000000	10.006700	4.136967	0.458267	16.912200	10.017900	0.582050	NaN	NaN	NaN	12.575971	6.001983	0.796847	19.673928	13.602960	0.870095	NaN	NaN	NaN	16.124949	9.802471	0.000000	0.155865	0.000000	0.194412	0.072999	0.101284	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.089300	15036.300000	4.000000	11.000000	31.000000	Nsco_Tails_biological_replicate1_apoptosis.27222.27222.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27222"	SSFYVNGLTLGGQKC	S[+28]SFYVNGLTLGGQKC[+57]	R	S	98.800000	53.600000	54.300000	49.200000	Dimethyl (+28), Dimethyl (+28), Carbamidomethyl (+57)	1685.840000	2.000000	-0.003500	-2.100000	57.000000	71.000000	0.398500	0.274500	0.764767	0.278050	0.078300	0.280200	NaN	NaN	NaN	0.500817	0.398249	1.329798	0.323455	0.106321	0.418865	NaN	NaN	NaN	0.412136	0.252285	0.134927	0.333915	1.000000	0.520523	0.072930	0.101196	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.162000	15036.300000	9.000000	26.000000	123.000000	Spectrum56125 scans:28542,	SSFYVNGLTLGGQKCSVIR	S[+28]SFYVNGLTLGGQKC[+57]SVIR	R	D	99.700000	54.200000	54.400000	43.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Carbamidomethyl (+57), Label:13C(6) (+6)	2151.180000	3.000000	0.000260	0.120000	57.000000	75.000000	16.965800	7.809667	0.388667	NaN	1.775900	NaN	NaN	NaN	NaN	21.321855	11.330399	0.675824	NaN	2.411433	NaN	NaN	NaN	NaN	21.321855	6.870916	NaN	0.349359	NaN	1.000000	1.000000	0.101151	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Methyltransferase-like protein 10 OS=Homo sapiens GN=METTL10 PE=4 SV=1	MET10_HUMAN	MET10_HUMAN	Methyltransferase-like protein 10 OS=Homo sapiens GN=METTL10 PE=1 SV=2	98.000000	0.004720	31812.900000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.15166.15166.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15166"	SSGADGGGGAAVAAR	S[+42]SGADGGGGAAVAAR	M	S	99.700000	77.000000	48.100000	61.400000	Acetyl (+42)	1244.570000	2.000000	-0.002700	-2.100000	2.000000	16.000000	4.833467	NaN	NaN	0.285800	1.689500	205.201750	NaN	NaN	NaN	6.074484	NaN	NaN	0.332471	2.294114	306.751999	NaN	NaN	NaN	3.203477	2.294114	0.465191	NaN	1.000000	NaN	0.072884	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Methyltransferase-like protein 10 OS=Homo sapiens GN=METTL10 PE=4 SV=1	G3V238_HUMAN	G3V238_HUMAN	Methyltransferase-like protein 10 OS=Homo sapiens GN=METTL10 PE=4 SV=1	98.000000	0.004720	11328.900000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.15142.15142.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15142"	SSGADGGGGAAVAAR	S[+42]SGADGGGGAAVAAR	M	S	99.300000	56.200000	48.800000	45.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1254.580000	2.000000	0.000600	0.480000	2.000000	16.000000	4.833467	NaN	NaN	0.285800	1.689500	205.201750	NaN	NaN	NaN	6.074484	NaN	NaN	0.332471	2.294114	306.751999	NaN	NaN	NaN	3.203477	2.294114	0.465191	NaN	1.000000	NaN	0.072861	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3	sp|P25788|PSA3_HUMAN	PSA3_HUMAN	Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2	100.000000	0.006590	28415.700000	2.000000	4.000000	5.000000	Spectrum12275 scans:44531,	SSIGTGYDLSASTFSPDGR	SSIGTGYDLSASTFSPDGR	M	V	99.700000	115.000000	46.800000	105.000000	Acetyl (+42), Label:13C(6) (+6)	1964.900000	2.000000	-0.004700	-2.400000	2.000000	20.000000	NaN	NaN	NaN	NaN	40.365900	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.811460	NaN	NaN	NaN	NaN	NaN	54.811460	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3	sp|P25788|PSA3_HUMAN	PSA3_HUMAN	Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2	100.000000	0.037600	28415.700000	2.000000	5.000000	15.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.30841.30841.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30841"	SSIGTGYDLSASTFSPDGR	SSIGTGYDLSASTFSPDGR	M	V	99.700000	151.000000	49.600000	136.000000	Acetyl (+42)	1958.880000	2.000000	-0.002000	-1.000000	2.000000	20.000000	NaN	NaN	NaN	NaN	40.365900	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.811460	NaN	NaN	NaN	NaN	NaN	54.811460	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3	sp|P25788|PSA3_HUMAN	PSA3_HUMAN	Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2	100.000000	0.021000	28415.700000	2.000000	4.000000	9.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.46932.46932.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=46932"	SSIGTGYDLSASTFSPDGR	SSIGTGYDLSASTFSPDGR	M	V	99.700000	101.000000	49.500000	101.000000		1916.870000	2.000000	-0.009900	-5.200000	2.000000	20.000000	NaN	NaN	NaN	NaN	40.365900	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.811460	NaN	NaN	NaN	NaN	NaN	54.811460	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Isoform 2 of Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3	sp|P25788|PSA3_HUMAN	PSA3_HUMAN	Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2	100.000000	0.021000	28415.700000	2.000000	4.000000	9.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.56273.56273.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=56273"	SSIGTGYDLSASTFSPDGR	SSIGTGYDLSASTFSPDGR	M	V	99.700000	144.000000	49.300000	140.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1968.890000	2.000000	-0.008800	-4.400000	2.000000	20.000000	NaN	NaN	NaN	NaN	40.365900	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.811460	NaN	NaN	NaN	NaN	NaN	54.811460	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Phosphotriesterase-related protein OS=Homo sapiens GN=PTER	sp|Q96BW5-2|PTER_HUMAN	PTER_HUMAN	Isoform 2 of Phosphotriesterase-related protein OS=Homo sapiens GN=PTER	100.000000	0.002630	33417.900000	1.000000	1.000000	2.000000	Spectrum68422 scans:43127,	SSLSGKVQTVLGLVEPSKLGR	S[+42]SLSGKVQTVLGLVEPSKLGR	M	T	99.600000	42.300000	52.900000	38.100000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2278.350000	3.000000	0.001800	0.780000	2.000000	22.000000	4.222400	2.681100	0.635000	0.335550	0.336800	0.932550	NaN	NaN	NaN	5.306523	3.889786	1.104156	0.390345	0.457329	1.394050	NaN	NaN	NaN	2.848434	2.173558	0.453255	0.425494	1.000000	1.000000	0.072723	0.100580	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Isoform 4 of Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP	sp|P62633-4|CNBP_HUMAN	CNBP_HUMAN	Isoform 4 of Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP	99.800000	0.039500	19573.200000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction2A.5805.5805.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=5805"	SSNECFKCGR	S[+42]SNEC[+57]FKC[+57]GR	M	S	99.600000	57.500000	42.700000	46.800000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl (+28), Carbamidomethyl (+57)	1313.550000	2.000000	-0.000910	-0.690000	2.000000	11.000000	782.525000	385.859700	0.476667	NaN	NaN	0.351400	NaN	NaN	3.078743	983.442252	559.811926	0.828841	NaN	NaN	0.525301	NaN	NaN	1.475342	983.442252	559.811926	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 4 of Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP	sp|P62633-4|CNBP_HUMAN	CNBP_HUMAN	Isoform 4 of Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP	99.900000	0.012500	19573.200000	1.000000	3.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.6198.6198.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6198"	SSNECFKCGR	S[+42]SNEC[+57]FKC[+57]GR	M	S	99.500000	59.100000	46.300000	45.700000	Acetyl (+42), Carbamidomethyl (+57), Dimethyl:2H(4) (+32), Carbamidomethyl (+57), Label:13C(6) (+6)	1323.590000	2.000000	-0.009100	-6.800000	2.000000	11.000000	782.525000	385.859700	0.476667	NaN	NaN	0.351400	NaN	NaN	3.078743	983.442252	559.811926	0.828841	NaN	NaN	0.525301	NaN	NaN	1.475342	983.442252	559.811926	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 4 of Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP	sp|P62633-4|CNBP_HUMAN	CNBP_HUMAN	Isoform 4 of Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP	99.900000	0.012500	19573.200000	1.000000	3.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.6332.6332.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6332"	SSNECFKCGR	S[+42]SNEC[+57]FKC[+57]GR	M	S	99.700000	63.400000	44.400000	55.400000	Acetyl (+42), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1331.570000	2.000000	-0.000690	-0.520000	2.000000	11.000000	782.525000	385.859700	0.476667	NaN	NaN	0.351400	NaN	NaN	3.078743	983.442252	559.811926	0.828841	NaN	NaN	0.525301	NaN	NaN	1.475342	983.442252	559.811926	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DNA replication licensing factor MCM4 OS=Homo sapiens GN=MCM4 PE=1 SV=5	MCM4_HUMAN	MCM4_HUMAN	DNA replication licensing factor MCM4 OS=Homo sapiens GN=MCM4 PE=1 SV=5	97.500000	0.001320	96542.600000	1.000000	1.000000	1.000000	Spectrum22588 scans:2925,	SSPASTPSR	S[+42]SPASTPSR	M	R	99.400000	54.800000	45.800000	25.300000	Acetyl (+42), Label:13C(6) (+6)	936.460000	2.000000	-0.000220	-0.230000	2.000000	10.000000	0.771000	1.213233	1.317900	0.662650	0.346200	0.522250	11.709643	13.485286	1.424886	0.968958	1.760180	2.291601	0.770859	0.470093	0.780701	7.831751	5.743255	0.682809	3.190523	2.657843	0.303048	0.235968	1.000000	0.435305	0.004940	0.006846	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum44233 scans:14939,	SSPELQAQIEAR	S[+28]SPELQAQIEAR	F	G	99.500000	62.100000	50.100000	44.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1365.710000	2.000000	-0.001200	-0.870000	1241.000000	1252.000000	0.371200	0.320300	0.583567	2.750650	2.364900	0.260300	NaN	NaN	NaN	0.466507	0.464697	1.014722	3.199826	3.211216	0.389117	NaN	NaN	NaN	1.833166	1.837956	0.407836	0.408510	1.000000	0.753203	0.072427	0.100362	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum44221 scans:14926,	SSPELQAQIEAR	S[+28]SPELQAQIEAR	F	G	99.600000	73.600000	50.300000	47.900000	Dimethyl (+28), Label:13C(6) (+6)	1361.720000	2.000000	-0.003300	-2.400000	1241.000000	1252.000000	0.371200	0.320300	0.583567	2.750650	2.364900	0.260300	NaN	NaN	NaN	0.466507	0.464697	1.014722	3.199826	3.211216	0.389117	NaN	NaN	NaN	1.833166	1.837956	0.407836	0.408510	1.000000	0.460236	0.072405	0.100318	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum44224 scans:14929,	SSPELQAQIEAR	S[+28]SPELQAQIEAR	F	G	99.700000	79.200000	49.900000	50.800000	Dimethyl (+28)	1355.700000	2.000000	-0.000120	-0.090000	1241.000000	1252.000000	0.371200	0.320300	0.583567	2.750650	2.364900	0.260300	NaN	NaN	NaN	0.466507	0.464697	1.014722	3.199826	3.211216	0.389117	NaN	NaN	NaN	1.833166	1.837956	0.407836	0.408510	1.000000	0.460087	0.072337	0.100275	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2	TTL12_HUMAN	TTL12_HUMAN	Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2	100.000000	0.007900	74385.700000	3.000000	5.000000	6.000000	Spectrum65641 scans:39890,	SSPGQTPEEGAQALAEFAALHGPALR	S[+28]SPGQTPEEGAQALAEFAALHGPALR	R	A	98.500000	36.400000	54.400000	31.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2642.330000	3.000000	-0.002500	-0.950000	15.000000	40.000000	NaN	NaN	0.233350	33.909050	6.382350	0.291550	NaN	NaN	NaN	NaN	NaN	0.405756	39.446328	8.666372	0.435832	NaN	NaN	NaN	39.446328	8.666372	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 4E-binding protein 2 OS=Homo sapiens GN=EIF4EBP2 PE=1 SV=1	4EBP2_HUMAN	4EBP2_HUMAN	Eukaryotic translation initiation factor 4E-binding protein 2 OS=Homo sapiens GN=EIF4EBP2 PE=1 SV=1	98.800000	0.003950	12921.500000	1.000000	3.000000	3.000000	Spectrum33123 scans:2156,	SSSAGSGHQPSQSR	S[+42]SSAGSGHQPSQSR	M	A	99.700000	84.100000	43.100000	72.400000	Acetyl (+42)	1413.620000	2.000000	0.000150	0.110000	2.000000	15.000000	0.986600	0.436967	0.517733	NaN	NaN	0.168400	NaN	NaN	NaN	1.239915	0.633959	0.900249	NaN	NaN	0.251738	NaN	NaN	NaN	1.239915	0.633959	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 4E-binding protein 2 OS=Homo sapiens GN=EIF4EBP2 PE=1 SV=1	4EBP2_HUMAN	4EBP2_HUMAN	Eukaryotic translation initiation factor 4E-binding protein 2 OS=Homo sapiens GN=EIF4EBP2 PE=1 SV=1	98.800000	0.003950	12921.500000	1.000000	3.000000	3.000000	Spectrum33120 scans:2153,	SSSAGSGHQPSQSR	S[+42]SSAGSGHQPSQSR	M	A	99.700000	89.400000	44.400000	77.900000	Acetyl (+42), Label:13C(6) (+6)	1419.640000	2.000000	-0.001900	-1.300000	2.000000	15.000000	0.986600	0.436967	0.517733	NaN	NaN	0.168400	NaN	NaN	NaN	1.239915	0.633959	0.900249	NaN	NaN	0.251738	NaN	NaN	NaN	1.239915	0.633959	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Eukaryotic translation initiation factor 4E-binding protein 2 OS=Homo sapiens GN=EIF4EBP2 PE=1 SV=1	4EBP2_HUMAN	4EBP2_HUMAN	Eukaryotic translation initiation factor 4E-binding protein 2 OS=Homo sapiens GN=EIF4EBP2 PE=1 SV=1	96.000000	0.006940	12921.500000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate_3_fraction6A.2160.2160.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2160"	SSSAGSGHQPSQSR	S[+42]SSAGSGHQPSQSR	M	A	99.700000	81.300000	46.100000	74.700000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1423.630000	2.000000	-0.006100	-4.300000	2.000000	15.000000	0.986600	0.436967	0.517733	NaN	NaN	0.168400	NaN	NaN	NaN	1.239915	0.633959	0.900249	NaN	NaN	0.251738	NaN	NaN	NaN	1.239915	0.633959	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Disks large-associated protein 5 (Fragment) OS=Homo sapiens GN=DLGAP5 PE=4 SV=1	G3V4E5_HUMAN	G3V4E5_HUMAN	Disks large-associated protein 5 (Fragment) OS=Homo sapiens GN=DLGAP5 PE=4 SV=1	96.000000	0.004480	26907.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.4298.4298.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4298"	SSSHFASR	S[+42]SSHFASR	M	H	99.000000	58.500000	46.100000	35.000000	Acetyl (+42)	919.410000	2.000000	-0.000031	-0.033000	2.000000	9.000000	0.552667	0.380333	0.859567	0.518650	0.127750	0.248300	NaN	0.738471	NaN	0.694567	0.551794	1.494639	0.603344	0.173467	0.371179	NaN	0.314508	NaN	0.648956	0.346590	0.044671	0.088219	0.104947	0.439198	0.072044	0.006813	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.025000	90567.200000	8.000000	16.000000	19.000000	Spectrum15705 scans:5076,	SSSPVNVKK	S[+42]SSPVNVKK	M	L	98.800000	50.300000	47.200000	40.000000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	1050.650000	2.000000	0.000120	0.110000	2.000000	10.000000	45.528667	66.040100	1.768667	9.334750	1.868250	0.199950	20.891543	NaN	NaN	57.218382	95.812119	3.075407	10.859096	2.536832	0.298901	13.972874	NaN	NaN	27.350117	49.174476	0.000000	0.341837	0.000000	1.000000	0.004911	0.099885	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.007510	90567.200000	3.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.5376.5376.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=5376"	SSSPVNVKK	S[+42]SSPVNVKK	M	L	99.500000	55.000000	52.700000	37.400000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1058.630000	2.000000	-0.001400	-1.300000	2.000000	10.000000	45.528667	66.040100	1.768667	9.334750	1.868250	0.199950	20.891543	NaN	NaN	57.218382	95.812119	3.075407	10.859096	2.536832	0.298901	13.972874	NaN	NaN	27.350117	49.174476	0.000000	0.341837	0.000000	0.345219	0.004909	0.099756	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU	sp|Q00839|HNRPU_HUMAN	HNRPU_HUMAN	Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6	100.000000	0.092200	90567.200000	4.000000	7.000000	7.000000	Nsco_Tails_biological_replicate_3_fraction2A.7924.7924.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7924"	SSSPVNVKKLK	S[+42]SSPVNVKKLK	M	V	99.000000	59.900000	53.600000	50.000000	Acetyl (+42), Dimethyl (+28), Dimethyl (+28), Dimethyl (+28)	1311.810000	2.000000	-0.001200	-0.950000	2.000000	12.000000	2.228767	61.680133	260.846033	129.039000	25.892550	0.198450	NaN	65.925886	NaN	2.801014	89.486604	453.566394	150.110804	35.158599	0.296659	NaN	28.077208	NaN	76.455909	50.907470	0.326137	0.000000	0.330422	0.000000	0.071977	0.006799	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	DRG1_HUMAN	DRG1_HUMAN	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	100.000000	0.005270	40525.800000	2.000000	4.000000	4.000000	Spectrum13026 scans:48763,	SSTLAKIAEIEAEMAR	S[+42]STLAKIAEIEAEMAR	M	T	99.700000	51.800000	52.800000	31.600000	Acetyl (+42), Dimethyl:2H(4) (+32), Oxidation (+16), Label:13C(6) (+6)	1814.970000	3.000000	0.002000	1.100000	2.000000	17.000000	3.304200	0.777100	0.222533	5.087150	1.056450	0.246950	NaN	NaN	NaN	4.152570	1.127430	0.386947	5.917871	1.434517	0.369161	NaN	NaN	NaN	5.035221	1.280974	0.110474	0.075946	0.419874	0.077922	0.071954	0.099670	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	DRG1_HUMAN	DRG1_HUMAN	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	100.000000	0.005270	40525.800000	2.000000	4.000000	4.000000	Spectrum13027 scans:48764,	SSTLAKIAEIEAEMAR	S[+42]STLAKIAEIEAEMAR	M	T	99.700000	65.500000	52.300000	48.700000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Oxidation (+16), Label:13C(6)15N(4) (+10)	1822.950000	3.000000	0.000660	0.360000	2.000000	17.000000	3.304200	0.777100	0.222533	5.087150	1.056450	0.246950	NaN	NaN	NaN	4.152570	1.127430	0.386947	5.917871	1.434517	0.369161	NaN	NaN	NaN	5.035221	1.280974	0.110474	0.075946	0.420796	0.077899	0.071932	0.099584	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	DRG1_HUMAN	DRG1_HUMAN	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	100.000000	0.010000	40525.800000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.43466.43466.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43466"	SSTLAKIAEIEAEMAR	S[+42]STLAKIAEIEAEMAR	M	T	99.700000	88.800000	56.300000	71.800000	Acetyl (+42), Dimethyl (+28)	1788.930000	2.000000	-0.000720	-0.400000	2.000000	17.000000	3.304200	0.777100	0.222533	5.087150	1.056450	0.246950	NaN	NaN	NaN	4.152570	1.127430	0.386947	5.917871	1.434517	0.369161	NaN	NaN	NaN	5.035221	1.280974	0.110474	0.075946	0.283749	0.077876	0.071843	0.099455	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	DRG1_HUMAN	DRG1_HUMAN	Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1	100.000000	0.022400	40525.800000	3.000000	4.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis.30135.30135.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30135"	SSTLAKIAEIEAEMAR	S[+42]STLAKIAEIEAEMAR	M	T	99.700000	66.200000	56.000000	59.800000	Acetyl (+42), Dimethyl (+28), Oxidation (+16)	1804.920000	2.000000	-0.001200	-0.690000	2.000000	17.000000	3.304200	0.777100	0.222533	5.087150	1.056450	0.246950	NaN	NaN	NaN	4.152570	1.127430	0.386947	5.917871	1.434517	0.369161	NaN	NaN	NaN	5.035221	1.280974	0.110474	0.075946	0.283539	0.083794	0.071820	0.098608	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Acylphosphatase OS=Homo sapiens GN=ACYP2 PE=3 SV=1	E9PF46_HUMAN	E9PF46_HUMAN	Acylphosphatase OS=Homo sapiens GN=ACYP2 PE=3 SV=1	97.400000	0.005760	10279.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.31141.31141.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31141"	STAQSLKSVDYEVFGR	S[+42]TAQSLKSVDYEVFGR	M	V	99.700000	82.300000	55.400000	81.400000	Acetyl (+42), Dimethyl (+28)	1855.930000	2.000000	-0.003000	-1.600000	30.000000	45.000000	2.563700	1.125133	0.445867	3.523200	0.307500	0.069200	NaN	NaN	NaN	3.221943	1.632363	0.775285	4.098531	0.417544	0.103446	NaN	NaN	NaN	3.660237	1.024953	0.075871	0.340577	0.194583	0.375652	0.071798	0.098440	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Acylphosphatase OS=Homo sapiens GN=ACYP2 PE=3 SV=1	F8WA34_HUMAN	F8WA34_HUMAN	Acylphosphatase OS=Homo sapiens GN=ACYP2 PE=3 SV=1	97.400000	0.005760	10277.500000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.31145.31145.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31145"	STAQSLKSVDYEVFGR	S[+42]TAQSLKSVDYEVFGR	M	V	99.300000	64.200000	55.800000	55.800000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1873.950000	2.000000	-0.008700	-4.600000	30.000000	45.000000	2.563700	1.125133	0.445867	3.523200	0.307500	0.069200	NaN	NaN	NaN	3.221943	1.632363	0.775285	4.098531	0.417544	0.103446	NaN	NaN	NaN	3.660237	1.024953	0.075871	0.340577	0.095839	0.748449	0.071776	0.098398	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein kinase C alpha type OS=Homo sapiens GN=PRKCA PE=1 SV=4	KPCA_HUMAN	KPCA_HUMAN	Protein kinase C alpha type OS=Homo sapiens GN=PRKCA PE=1 SV=4	100.000000	0.010500	76733.100000	1.000000	5.000000	8.000000	Spectrum33902 scans:3029,	STASQDVANR	S[+28]TASQDVANR	D	F	99.300000	66.600000	46.700000	51.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1085.540000	2.000000	0.001300	1.200000	10.000000	19.000000	1.001700	0.435433	0.665667	NaN	NaN	NaN	NaN	NaN	NaN	1.258892	0.631734	1.157480	NaN	NaN	NaN	NaN	NaN	NaN	1.258892	0.631734	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=4 SV=1	sp|P20340-3|RAB6A_HUMAN	RAB6A_HUMAN	Isoform 3 of Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A	96.600000	0.002360	0.000000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.41173.41173.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41173"	STGGDFGNPLR	S[+42]TGGDFGNPLR	M	K	99.500000	55.300000	48.400000	43.700000	Acetyl (+42)	1161.540000	2.000000	-0.002300	-2.000000	0.000000	0.000000	0.344133	0.501700	3.366233	0.306900	0.328700	1.247950	NaN	NaN	NaN	0.432491	0.727875	5.853301	0.357016	0.446330	1.865536	NaN	NaN	NaN	0.394754	0.587103	0.060675	0.149817	0.118951	0.328820	0.071665	0.097815	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=4 SV=1	F5GX61_HUMAN	F5GX61_HUMAN	Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=4 SV=1	98.800000	0.001320	9833.800000	1.000000	1.000000	1.000000	Spectrum9437 scans:34316,	STGGDFGNPLR	S[+42]TGGDFGNPLR	M	K	99.700000	67.300000	45.400000	60.800000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1171.550000	2.000000	-0.000500	-0.420000	2.000000	12.000000	0.344133	0.501700	3.366233	0.306900	0.328700	1.247950	NaN	NaN	NaN	0.432491	0.727875	5.853301	0.357016	0.446330	1.865536	NaN	NaN	NaN	0.394754	0.587103	0.060675	0.149817	0.118883	0.328612	0.071642	0.097650	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	AL9A1_HUMAN	AL9A1_HUMAN	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	100.000000	0.018400	53784.000000	4.000000	9.000000	14.000000	Spectrum58297 scans:31194,	STGTFVVSQPLNYR	S[+42]TGTFVVSQPLNYR	M	G	99.500000	68.900000	50.300000	58.000000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1619.810000	2.000000	-0.004000	-2.500000	2.000000	15.000000	0.588600	0.342233	0.580633	0.723300	0.475550	0.657850	NaN	NaN	NaN	0.739726	0.496518	1.009622	0.841413	0.645733	0.983407	NaN	NaN	NaN	0.790570	0.571125	0.040886	0.082695	0.318822	0.181270	0.071620	0.097609	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	AL9A1_HUMAN	AL9A1_HUMAN	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	100.000000	0.018400	53784.000000	4.000000	9.000000	14.000000	Spectrum58392 scans:31299,	STGTFVVSQPLNYR	S[+42]TGTFVVSQPLNYR	M	G	99.700000	76.200000	50.300000	60.700000	Acetyl (+42)	1609.810000	2.000000	-0.001800	-1.100000	2.000000	15.000000	0.588600	0.342233	0.580633	0.723300	0.475550	0.657850	NaN	NaN	NaN	0.739726	0.496518	1.009622	0.841413	0.645733	0.983407	NaN	NaN	NaN	0.790570	0.571125	0.040886	0.082695	0.318108	0.181156	0.071598	0.097568	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	AL9A1_HUMAN	AL9A1_HUMAN	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	100.000000	0.018400	53784.000000	4.000000	9.000000	14.000000	Spectrum58414 scans:31324,	STGTFVVSQPLNYR	S[+42]TGTFVVSQPLNYR	M	G	99.700000	76.200000	51.000000	61.000000	Acetyl (+42), Label:13C(6) (+6)	1615.830000	2.000000	-0.001200	-0.750000	2.000000	15.000000	0.588600	0.342233	0.580633	0.723300	0.475550	0.657850	NaN	NaN	NaN	0.739726	0.496518	1.009622	0.841413	0.645733	0.983407	NaN	NaN	NaN	0.790570	0.571125	0.040886	0.082695	0.317396	0.296744	0.071576	0.097527	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	SYAC_HUMAN	SYAC_HUMAN	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	100.000000	0.063200	106795.200000	2.000000	8.000000	48.000000	Spectrum27560 scans:8796,	STLTASEIR	S[+28]TLTASEIR	D	Q	98.800000	51.700000	48.600000	18.500000	Dimethyl (+28), Label:13C(6) (+6)	1010.570000	2.000000	0.000250	0.250000	3.000000	11.000000	0.726167	0.689267	0.788700	0.611200	0.516750	0.844600	5.226571	NaN	NaN	0.912614	1.000000	1.371414	0.711008	0.701677	1.262576	3.495684	NaN	NaN	1.706435	0.850838	0.197307	0.110484	1.000000	0.127538	0.004879	0.097404	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	SYAC_HUMAN	SYAC_HUMAN	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	100.000000	0.063200	106795.200000	2.000000	8.000000	48.000000	Spectrum27556 scans:8788,	STLTASEIR	S[+28]TLTASEIR	D	Q	98.900000	52.800000	48.600000	18.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1014.560000	2.000000	0.000330	0.320000	3.000000	11.000000	0.726167	0.689267	0.788700	0.611200	0.516750	0.844600	5.226571	NaN	NaN	0.912614	1.000000	1.371414	0.711008	0.701677	1.262576	3.495684	NaN	NaN	1.706435	0.850838	0.197307	0.110484	0.245837	0.127495	0.004877	0.097363	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	SYAC_HUMAN	SYAC_HUMAN	Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	100.000000	0.017500	106795.200000	2.000000	5.000000	7.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.9902.9902.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9902"	STLTASEIR	S[+28]TLTASEIR	D	Q	98.600000	51.700000	52.300000	16.000000	Dimethyl (+28)	1004.550000	2.000000	0.002100	2.000000	3.000000	11.000000	0.726167	0.689267	0.788700	0.611200	0.516750	0.844600	5.226571	NaN	NaN	0.912614	1.000000	1.371414	0.711008	0.701677	1.262576	3.495684	NaN	NaN	1.706435	0.850838	0.197307	0.110484	0.669263	1.000000	0.004871	0.096873	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4	SYVC_HUMAN	SYVC_HUMAN	Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4	100.000000	0.007510	140459.500000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.30744.30744.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30744"	STLYVSPHPDAFPSLR	S[+42]TLYVSPHPDAFPSLR	M	A	99.700000	73.400000	55.300000	71.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1837.920000	2.000000	-0.002000	-1.100000	2.000000	17.000000	0.690133	1.832533	1.733467	0.779750	0.338800	0.434500	NaN	NaN	NaN	0.867329	2.658671	3.014200	0.907082	0.460045	0.649525	NaN	NaN	NaN	0.887205	1.559358	0.014260	0.390922	0.048323	1.000000	0.071377	0.096469	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4	SYVC_HUMAN	SYVC_HUMAN	Valine--tRNA ligase OS=Homo sapiens GN=VARS PE=1 SV=4	100.000000	0.007510	140459.500000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.30743.30743.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30743"	STLYVSPHPDAFPSLR	S[+42]TLYVSPHPDAFPSLR	M	A	99.700000	94.200000	55.300000	80.700000	Acetyl (+42)	1827.920000	2.000000	0.000820	0.450000	2.000000	17.000000	0.690133	1.832533	1.733467	0.779750	0.338800	0.434500	NaN	NaN	NaN	0.867329	2.658671	3.014200	0.907082	0.460045	0.649525	NaN	NaN	NaN	0.887205	1.559358	0.014260	0.390922	0.014503	1.000000	0.071355	0.095909	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.079000	62047.800000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate_3_fraction2A.3287.3287.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3287"	STMQELNSR	STMQELNSR	K	L	99.500000	61.800000	48.300000	50.600000	Dimethyl (+28), Oxidation (+16)	1108.520000	2.000000	0.000003	0.003100	155.000000	163.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.030300	62047.800000	7.000000	12.000000	23.000000	Spectrum16560 scans:6590,	STMQELNSR	STMQELNSR	K	L	98.600000	46.200000	45.800000	34.800000	Dimethyl (+28)	1092.520000	2.000000	-0.000820	-0.750000	155.000000	163.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.030300	62047.800000	7.000000	12.000000	23.000000	Spectrum21364 scans:2701,	STMQELNSR	STMQELNSR	K	L	99.700000	77.200000	43.300000	53.700000	Oxidation (+16)	1080.490000	2.000000	-0.000200	-0.180000	155.000000	163.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum64290 scans:38391,	STNGDTFLGGEDFDQALLR	S[+28]TNGDTFLGGEDFDQALLR	K	H	99.700000	83.400000	48.900000	68.500000	Dimethyl (+28)	2082.980000	2.000000	-0.005100	-2.500000	266.000000	284.000000	NaN	2.109667	1.024700	1.311050	1.373300	2.160150	NaN	NaN	NaN	NaN	3.060741	1.781777	1.525142	1.864757	3.229165	NaN	NaN	NaN	1.525142	2.462749	NaN	0.151646	NaN	0.303993	1.000000	0.095751	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum64269 scans:38365,	STNGDTFLGGEDFDQALLR	S[+28]TNGDTFLGGEDFDQALLR	K	H	99.700000	89.500000	50.400000	75.200000	Dimethyl (+28), Label:13C(6) (+6)	2089.010000	2.000000	0.002300	1.100000	266.000000	284.000000	NaN	2.109667	1.024700	1.311050	1.373300	2.160150	NaN	NaN	NaN	NaN	3.060741	1.781777	1.525142	1.864757	3.229165	NaN	NaN	NaN	1.525142	2.462749	NaN	0.151646	NaN	0.478374	1.000000	0.095711	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum43924 scans:14576,	STPHVAEPAENEQDEQDENGAEASADLR	S[+28]TPHVAEPAENEQDEQDENGAEASADLR	M	A	99.700000	61.600000	43.700000	56.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	3046.320000	3.000000	-0.005500	-1.800000	468.000000	495.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum43904 scans:14553,	STPHVAEPAENEQDEQDENGAEASADLR	S[+28]TPHVAEPAENEQDEQDENGAEASADLR	M	A	99.700000	58.200000	43.700000	55.900000	Dimethyl (+28)	3036.320000	3.000000	-0.000800	-0.260000	468.000000	495.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2	MPPB_HUMAN	MPPB_HUMAN	Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2	99.500000	0.005760	54349.100000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.19622.19622.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19622"	STQAATQVVLNVPETR	S[+28]TQAATQVVLNVPETR	R	V	99.700000	115.000000	57.000000	104.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1750.950000	2.000000	0.000110	0.062000	44.000000	59.000000	0.525500	0.323133	0.640167	1.705250	0.146550	0.084800	NaN	NaN	NaN	0.660425	0.468807	1.113140	1.983714	0.198995	0.126766	NaN	NaN	NaN	1.322069	0.333901	0.295402	0.244446	1.000000	1.000000	0.070874	0.095592	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2	MPPB_HUMAN	MPPB_HUMAN	Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2	98.000000	0.007080	54349.100000	1.000000	3.000000	3.000000	NSco_TAILS_20150124_Protein_complex_100Kda.38237.38237.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38237"	STQAATQVVLNVPETR	S[+28]TQAATQVVLNVPETR	R	V	99.700000	113.000000	56.700000	101.000000	Dimethyl (+28)	1740.930000	2.000000	-0.012000	-6.700000	44.000000	59.000000	0.525500	0.323133	0.640167	1.705250	0.146550	0.084800	NaN	NaN	NaN	0.660425	0.468807	1.113140	1.983714	0.198995	0.126766	NaN	NaN	NaN	1.322069	0.333901	0.295402	0.244446	1.000000	1.000000	0.070787	0.095553	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2	MPPB_HUMAN	MPPB_HUMAN	Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2	100.000000	0.003950	54349.100000	2.000000	3.000000	3.000000	Spectrum49582 scans:21073,	STQAATQVVLNVPETR	S[+28]TQAATQVVLNVPETR	R	V	99.700000	110.000000	52.700000	90.800000	Dimethyl (+28), Label:13C(6) (+6)	1746.950000	2.000000	-0.004600	-2.600000	44.000000	59.000000	0.525500	0.323133	0.640167	1.705250	0.146550	0.084800	NaN	NaN	NaN	0.660425	0.468807	1.113140	1.983714	0.198995	0.126766	NaN	NaN	NaN	1.322069	0.333901	0.295402	0.244446	0.334218	0.466573	0.070766	0.095513	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Purine nucleoside phosphorylase OS=Homo sapiens GN=PNP PE=1 SV=2	PNPH_HUMAN	PNPH_HUMAN	Purine nucleoside phosphorylase OS=Homo sapiens GN=PNP PE=1 SV=2	100.000000	0.007900	32100.000000	3.000000	5.000000	6.000000	Spectrum33092 scans:2119,	STVPGHAGR	NaN	R	L	99.700000	41.400000	47.900000	17.600000	Dimethyl (+28), Label:13C(6) (+6)	914.500000	3.000000	0.000270	0.300000	59.000000	67.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	dCTP pyrophosphatase 1 OS=Homo sapiens GN=DCTPP1 PE=1 SV=1	DCTP1_HUMAN	DCTP1_HUMAN	dCTP pyrophosphatase 1 OS=Homo sapiens GN=DCTPP1 PE=1 SV=1	100.000000	0.002630	18663.200000	2.000000	2.000000	2.000000	Spectrum27800 scans:9268,	SVAGGEIR	S[+42]VAGGEIR	M	G	99.000000	68.800000	47.700000	19.500000	Acetyl (+42), Label:13C(6) (+6)	835.450000	2.000000	0.000002	0.002600	2.000000	9.000000	0.600867	0.259300	0.428267	0.693850	0.487750	0.703550	1.112043	0.873457	1.764300	0.755142	0.376197	0.744682	0.807154	0.662299	1.051723	0.743767	0.371997	0.845457	0.768688	0.470164	0.000644	0.039310	0.000826	0.096674	0.004813	0.006507	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	dCTP pyrophosphatase 1 OS=Homo sapiens GN=DCTPP1 PE=1 SV=1	DCTP1_HUMAN	DCTP1_HUMAN	dCTP pyrophosphatase 1 OS=Homo sapiens GN=DCTPP1 PE=1 SV=1	96.000000	0.004480	18663.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.9850.9850.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9850"	SVAGGEIR	S[+42]VAGGEIR	M	G	99.000000	56.900000	50.000000	15.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	839.440000	2.000000	-0.000620	-0.730000	2.000000	9.000000	0.600867	0.259300	0.428267	0.693850	0.487750	0.703550	1.112043	0.873457	1.764300	0.755142	0.376197	0.744682	0.807154	0.662299	1.051723	0.743767	0.371997	0.845457	0.768688	0.470164	0.000644	0.039310	0.000825	0.096606	0.004809	0.006502	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	sp|P25789|PSA4_HUMAN	PSA4_HUMAN	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	100.000000	0.013400	29466.800000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.28043.28043.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28043"	SVAGITSDANVLTNELR	SVAGITSDANVLTNELR	C	L	99.400000	63.900000	56.700000	50.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1796.950000	2.000000	-0.005400	-3.000000	75.000000	91.000000	2.276167	2.452633	0.988367	2.651200	NaN	NaN	NaN	NaN	NaN	2.860584	3.558323	1.718600	3.084136	NaN	NaN	NaN	NaN	NaN	2.972360	3.558323	0.023929	NaN	0.664265	NaN	0.070507	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	sp|P25789|PSA4_HUMAN	PSA4_HUMAN	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	100.000000	0.013400	29466.800000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.28042.28042.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28042"	SVAGITSDANVLTNELR	SVAGITSDANVLTNELR	C	L	99.600000	68.200000	56.800000	59.100000	Dimethyl (+28)	1786.950000	2.000000	0.002900	1.600000	75.000000	91.000000	2.276167	2.452633	0.988367	2.651200	NaN	NaN	NaN	NaN	NaN	2.860584	3.558323	1.718600	3.084136	NaN	NaN	NaN	NaN	NaN	2.972360	3.558323	0.023929	NaN	0.213453	NaN	0.070485	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.034200	38850.300000	7.000000	16.000000	26.000000	Spectrum43061 scans:13568,	SVDPDSPAEASGLR	S[+28]VDPDSPAEASGLR	R	A	99.700000	67.700000	48.800000	52.200000	Dimethyl (+28), Label:13C(6) (+6)	1433.710000	2.000000	-0.001200	-0.800000	181.000000	194.000000	0.386533	0.257533	0.685200	NaN	1.731350	NaN	NaN	NaN	NaN	0.485778	0.373634	1.191445	NaN	2.350940	NaN	NaN	NaN	NaN	0.485778	1.362287	NaN	0.399662	NaN	1.000000	1.000000	0.095199	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.034200	38850.300000	7.000000	16.000000	26.000000	Spectrum43033 scans:13532,	SVDPDSPAEASGLR	S[+28]VDPDSPAEASGLR	R	A	99.700000	73.200000	47.700000	54.300000	Dimethyl (+28)	1427.690000	2.000000	-0.001800	-1.200000	181.000000	194.000000	0.386533	0.257533	0.685200	NaN	1.731350	NaN	NaN	NaN	NaN	0.485778	0.373634	1.191445	NaN	2.350940	NaN	NaN	NaN	NaN	0.485778	1.362287	NaN	0.399662	NaN	1.000000	1.000000	0.095160	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	NHRF1_HUMAN	NHRF1_HUMAN	Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Homo sapiens GN=SLC9A3R1 PE=1 SV=4	100.000000	0.034200	38850.300000	7.000000	16.000000	26.000000	Spectrum43037 scans:13538,	SVDPDSPAEASGLR	S[+28]VDPDSPAEASGLR	R	A	99.700000	75.200000	48.000000	57.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1437.700000	2.000000	-0.001800	-1.200000	181.000000	194.000000	0.386533	0.257533	0.685200	NaN	1.731350	NaN	NaN	NaN	NaN	0.485778	0.373634	1.191445	NaN	2.350940	NaN	NaN	NaN	NaN	0.485778	1.362287	NaN	0.399662	NaN	1.000000	1.000000	0.095121	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.040800	82573.600000	11.000000	21.000000	31.000000	Spectrum36143 scans:5563,	SVGKPALER	NaN	R	F	99.300000	31.900000	46.700000	17.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1021.650000	3.000000	0.000220	0.210000	612.000000	620.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Calcium-regulated heat stable protein 1 OS=Homo sapiens GN=CARHSP1 PE=1 SV=2	H3BNU9_HUMAN	H3BNU9_HUMAN	Calcium-regulated heat stable protein 1 (Fragment) OS=Homo sapiens GN=CARHSP1 PE=4 SV=1	100.000000	0.004670	14197.900000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.32733.32733.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32733"	SVGLLDTPR	S[+28]VGLLDTPR	A	S	99.600000	60.300000	52.400000	31.200000	Dimethyl (+28)	984.560000	2.000000	-0.000200	-0.210000	17.000000	25.000000	0.582233	0.169667	0.291467	8.230650	6.350750	0.835050	NaN	NaN	NaN	0.731725	0.246155	0.506810	9.574698	8.623464	1.248300	NaN	NaN	NaN	5.153211	4.434810	0.451442	0.481833	1.000000	1.000000	0.070357	0.095042	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	SODC_HUMAN	SODC_HUMAN	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	100.000000	0.049000	15917.300000	7.000000	17.000000	17.000000	Nsco_Tails_biological_replicate1_apoptosis.20659.20659.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20659"	SVISLSGDHCIIGR	S[+28]VISLSGDHC[+57]IIGR	D	T	98.600000	68.500000	55.600000	59.900000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6) (+6)	1546.820000	3.000000	0.000620	0.400000	103.000000	116.000000	0.596867	0.338167	0.566700	0.227650	0.452150	3.047250	NaN	NaN	NaN	0.750115	0.490618	0.985394	0.264825	0.613959	4.555273	NaN	NaN	NaN	0.507470	0.552288	0.283941	0.070794	1.000000	0.085002	0.070335	0.095003	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	SODC_HUMAN	SODC_HUMAN	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	100.000000	0.049000	15917.300000	7.000000	17.000000	17.000000	Nsco_Tails_biological_replicate1_apoptosis.20627.20627.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20627"	SVISLSGDHCIIGR	S[+28]VISLSGDHC[+57]IIGR	D	T	99.700000	66.900000	55.000000	48.500000	Dimethyl (+28), Carbamidomethyl (+57)	1540.800000	2.000000	-0.001300	-0.810000	103.000000	116.000000	0.596867	0.338167	0.566700	0.227650	0.452150	3.047250	NaN	NaN	NaN	0.750115	0.490618	0.985394	0.264825	0.613959	4.555273	NaN	NaN	NaN	0.507470	0.552288	0.283941	0.070794	1.000000	0.331518	0.070314	0.094964	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	SODC_HUMAN	SODC_HUMAN	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	100.000000	0.018700	15917.300000	3.000000	6.000000	8.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.39002.39002.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39002"	SVISLSGDHCIIGR	S[+28]VISLSGDHC[+57]IIGR	D	T	99.700000	72.600000	55.000000	57.000000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1550.810000	2.000000	-0.003500	-2.200000	103.000000	116.000000	0.596867	0.338167	0.566700	0.227650	0.452150	3.047250	NaN	NaN	NaN	0.750115	0.490618	0.985394	0.264825	0.613959	4.555273	NaN	NaN	NaN	0.507470	0.552288	0.283941	0.070794	0.600411	0.212688	0.070293	0.094925	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.035800	99012.600000	4.000000	8.000000	8.000000	Nsco_Tails_biological_replicate2_apoptosis.19751.19751.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19751"	SVIVVDNVPQVGPDR	S[+28]VIVVDNVPQVGPDR	D	L	99.700000	84.700000	56.500000	74.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1630.890000	2.000000	-0.000320	-0.200000	185.000000	199.000000	0.123733	NaN	NaN	0.875650	0.295750	0.337850	NaN	NaN	NaN	0.155502	NaN	NaN	1.018642	0.401589	0.505045	NaN	NaN	NaN	0.587072	0.401589	0.403560	NaN	0.852834	NaN	0.070207	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Bardet-Biedl syndrome 5 protein OS=Homo sapiens GN=BBS5 PE=4 SV=1	E9PBE3_HUMAN	E9PBE3_HUMAN	Bardet-Biedl syndrome 5 protein OS=Homo sapiens GN=BBS5 PE=4 SV=1	99.800000	0.008960	60960.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.38744.38744.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38744"	SVLDALWEDR	S[+42]VLDALWEDR	M	D	99.700000	62.600000	50.900000	43.100000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1254.610000	2.000000	-0.001100	-0.850000	2.000000	11.000000	0.040400	0.075100	1.225300	0.639350	0.087650	0.141150	NaN	NaN	NaN	0.050773	0.108956	2.130586	0.743755	0.119017	0.211002	NaN	NaN	NaN	0.397264	0.113987	0.456608	0.028076	0.828244	0.084204	0.070186	0.094848	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Bardet-Biedl syndrome 5 protein OS=Homo sapiens GN=BBS5 PE=4 SV=1	E9PBE3_HUMAN	E9PBE3_HUMAN	Bardet-Biedl syndrome 5 protein OS=Homo sapiens GN=BBS5 PE=4 SV=1	99.800000	0.008960	60960.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.38741.38741.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38741"	SVLDALWEDR	S[+42]VLDALWEDR	M	D	99.700000	72.200000	50.800000	52.800000	Acetyl (+42)	1244.600000	2.000000	0.000700	0.560000	2.000000	11.000000	0.040400	0.075100	1.225300	0.639350	0.087650	0.141150	NaN	NaN	NaN	0.050773	0.108956	2.130586	0.743755	0.119017	0.211002	NaN	NaN	NaN	0.397264	0.113987	0.456608	0.028076	0.498248	0.255036	0.070165	0.094731	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	HSP74_HUMAN	HSP74_HUMAN	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	100.000000	0.009440	94313.900000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.54423.54423.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=54423"	SVMDATQIAGLNCLR	S[+28]VMDATQIAGLNC[+57]LR	R	L	99.700000	65.800000	54.300000	65.800000	Dimethyl (+28), Carbamidomethyl (+57)	1675.840000	2.000000	-0.001500	-0.910000	155.000000	169.000000	0.456267	0.311833	0.685333	0.782050	0.805900	4.236500	0.437900	1.415014	NaN	0.573415	0.452413	1.191677	0.909757	1.094304	6.333059	0.292880	0.602641	NaN	0.592018	0.716453	0.079991	0.066032	0.087258	0.598250	0.004783	0.006456	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	HSP74_HUMAN	HSP74_HUMAN	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	100.000000	0.009440	94313.900000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.54346.54346.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=54346"	SVMDATQIAGLNCLR	S[+28]VMDATQIAGLNC[+57]LR	R	L	99.700000	73.900000	54.300000	69.600000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1685.840000	2.000000	-0.006600	-3.900000	155.000000	169.000000	0.456267	0.311833	0.685333	0.782050	0.805900	4.236500	0.437900	1.415014	NaN	0.573415	0.452413	1.191677	0.909757	1.094304	6.333059	0.292880	0.602641	NaN	0.592018	0.716453	0.079991	0.066032	0.192622	0.118108	0.004781	0.006454	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1	EIF3M_HUMAN	EIF3M_HUMAN	Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1	100.000000	0.026300	42485.800000	2.000000	8.000000	20.000000	Spectrum69703 scans:44681,	SVPAFIDISEEDQAAELR	SVPAFIDISEEDQAAELR	M	A	99.700000	118.000000	50.300000	106.000000	Acetyl (+42)	2030.980000	2.000000	0.002600	1.300000	2.000000	19.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1	EIF3M_HUMAN	EIF3M_HUMAN	Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1	100.000000	0.026300	42485.800000	2.000000	8.000000	20.000000	Spectrum70023 scans:45094,	SVPAFIDISEEDQAAELR	SVPAFIDISEEDQAAELR	M	A	99.700000	126.000000	51.100000	109.000000	Acetyl (+42), Label:13C(6) (+6)	2037.000000	2.000000	-0.001700	-0.830000	2.000000	19.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1	EIF3M_HUMAN	EIF3M_HUMAN	Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1	100.000000	0.032600	42485.800000	2.000000	4.000000	13.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.42695.42695.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42695"	SVPAFIDISEEDQAAELR	SVPAFIDISEEDQAAELR	M	A	99.700000	107.000000	54.700000	96.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	2040.990000	2.000000	0.001900	0.920000	2.000000	19.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3	UBP14_HUMAN	UBP14_HUMAN	Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3	100.000000	0.006590	56052.300000	4.000000	5.000000	5.000000	Spectrum44486 scans:15231,	SVPELKDALKR	NaN	R	Y	99.500000	25.200000	45.600000	11.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1352.890000	4.000000	-0.000640	-0.470000	125.000000	135.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYPLA2 PE=1 SV=1	Q5QPN5_HUMAN	Q5QPN5_HUMAN	Acyl-protein thioesterase 2 (Fragment) OS=Homo sapiens GN=LYPLA2 PE=2 SV=1	90.900000	0.002880	9715.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.35652.35652.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35652"	SVPLLTDAATVSGAER	S[+42]VPLLTDAATVSGAER	M	E	99.000000	75.200000	54.600000	67.400000	Acetyl (+42)	1627.830000	2.000000	-0.016000	-10.000000	7.000000	22.000000	1.396167	0.431833	0.347800	3.393100	1.641500	0.637650	NaN	NaN	NaN	1.754640	0.626511	0.604764	3.947186	2.228936	0.953210	NaN	NaN	NaN	2.850913	1.427724	0.233705	0.325559	0.238096	0.813312	0.069742	0.094460	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYPLA2 PE=1 SV=1	LYPA2_HUMAN	LYPA2_HUMAN	Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYPLA2 PE=1 SV=1	96.000000	0.002500	24719.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.36332.36332.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36332"	SVPLLTDAATVSGAER	S[+42]VPLLTDAATVSGAER	M	E	99.000000	57.300000	56.000000	55.400000	Acetyl (+42), Label:13C(6) (+6)	1633.870000	2.000000	0.003700	2.300000	7.000000	22.000000	1.396167	0.431833	0.347800	3.393100	1.641500	0.637650	NaN	NaN	NaN	1.754640	0.626511	0.604764	3.947186	2.228936	0.953210	NaN	NaN	NaN	2.850913	1.427724	0.233705	0.325559	1.000000	0.408568	0.069721	0.094383	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	HSP74_HUMAN	HSP74_HUMAN	Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4	100.000000	0.014000	94313.900000	5.000000	6.000000	6.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.64208.64208.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64208"	SVVGIDLGFQSCY	S[+42]VVGIDLGFQSC[+57]Y	M	V	99.400000	56.600000	49.100000	38.000000	Acetyl (+42), Carbamidomethyl (+57)	1485.680000	2.000000	0.000870	0.580000	2.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Centromere protein F OS=Homo sapiens GN=CENPF PE=1 SV=2	CENPF_HUMAN	CENPF_HUMAN	Centromere protein F OS=Homo sapiens GN=CENPF PE=1 SV=2	98.900000	0.005010	367746.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.39481.39481.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39481"	SWALEEWKEGLPTR	S[+42]WALEEWKEGLPTR	M	A	99.700000	73.100000	55.500000	61.600000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1788.910000	2.000000	-0.011000	-6.300000	2.000000	15.000000	1.303900	2.359100	1.809200	3.927450	6.503200	1.412450	NaN	NaN	NaN	1.638683	3.422623	3.145888	4.568795	8.830471	2.111443	NaN	NaN	NaN	3.103739	6.126547	0.280763	0.264601	1.000000	0.279502	0.069679	0.094268	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	SRSF2_HUMAN	SRSF2_HUMAN	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	100.000000	0.002630	25459.100000	1.000000	2.000000	2.000000	Spectrum53002 scans:25003,	SYGRPPPDVEGMTSLKVDNLTYR	S[+42]YGRPPPDVEGMTSLKVDNLTYR	M	T	99.300000	45.400000	55.100000	42.200000	Acetyl (+42), Label:13C(6) (+6), Oxidation (+16), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2696.380000	3.000000	-0.005100	-1.900000	2.000000	24.000000	25.146133	6.579333	0.246933	465.509300	185.225450	0.361750	NaN	NaN	NaN	31.602530	9.545411	0.429375	541.526014	251.511236	0.540773	NaN	NaN	NaN	286.564272	130.528323	0.000000	0.014804	0.000000	0.295227	0.069428	0.094229	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	SRSF2_HUMAN	SRSF2_HUMAN	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	100.000000	0.002630	25459.100000	1.000000	2.000000	2.000000	Spectrum52990 scans:24989,	SYGRPPPDVEGMTSLKVDNLTYR	S[+42]YGRPPPDVEGMTSLKVDNLTYR	M	T	99.600000	53.800000	53.700000	45.700000	Acetyl (+42), Label:13C(6)15N(4) (+10), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2708.340000	3.000000	-0.008700	-3.200000	2.000000	24.000000	25.146133	6.579333	0.246933	465.509300	185.225450	0.361750	NaN	NaN	NaN	31.602530	9.545411	0.429375	541.526014	251.511236	0.540773	NaN	NaN	NaN	286.564272	130.528323	0.000000	0.014804	0.000000	0.293540	0.069407	0.094076	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	SRSF2_HUMAN	SRSF2_HUMAN	Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4	100.000000	0.012500	25459.100000	3.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.28979.28979.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28979"	SYGRPPPDVEGMTSLKVDNLTYR	S[+42]YGRPPPDVEGMTSLKVDNLTYR	M	T	99.400000	76.700000	58.300000	73.100000	Acetyl (+42), Dimethyl (+28)	2664.320000	3.000000	-0.001400	-0.510000	2.000000	24.000000	25.146133	6.579333	0.246933	465.509300	185.225450	0.361750	NaN	NaN	NaN	31.602530	9.545411	0.429375	541.526014	251.511236	0.540773	NaN	NaN	NaN	286.564272	130.528323	0.000000	0.014804	0.000000	0.168425	0.069282	0.094038	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C	sp|Q9UNZ2|NSF1C_HUMAN	NSF1C_HUMAN	NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2	100.000000	0.014500	40555.200000	6.000000	10.000000	11.000000	Spectrum56471 scans:28965,	SYQDPSNAQFLESIR	S[+28]YQDPSNAQFLESIR	R	R	99.500000	37.600000	50.200000	26.600000	Dimethyl (+28), Label:13C(6) (+6)	1787.880000	3.000000	0.000510	0.290000	200.000000	214.000000	1.044267	1.728233	1.310900	1.137650	8.680350	1.601550	NaN	NaN	NaN	1.312387	2.507351	2.279430	1.323426	11.786747	2.394125	NaN	NaN	NaN	1.317907	7.147049	0.002666	0.343601	0.004125	0.383375	0.069220	0.093923	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform 3 of NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C	sp|Q9UNZ2|NSF1C_HUMAN	NSF1C_HUMAN	NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2	100.000000	0.011600	40555.200000	2.000000	4.000000	5.000000	Nsco_Tails_biological_replicate_3_fraction6A.28917.28917.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28917"	SYQDPSNAQFLESIR	S[+28]YQDPSNAQFLESIR	R	R	99.700000	76.800000	52.300000	70.700000	Dimethyl (+28)	1781.850000	2.000000	-0.013000	-7.300000	200.000000	214.000000	1.044267	1.728233	1.310900	1.137650	8.680350	1.601550	NaN	NaN	NaN	1.312387	2.507351	2.279430	1.323426	11.786747	2.394125	NaN	NaN	NaN	1.317907	7.147049	0.002666	0.343601	0.004119	0.383252	0.069137	0.093885	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dihydropyrimidinase-related protein 2 OS=Homo sapiens GN=DPYSL2 PE=1 SV=1	DPYL2_HUMAN	DPYL2_HUMAN	Dihydropyrimidinase-related protein 2 OS=Homo sapiens GN=DPYSL2 PE=1 SV=1	100.000000	0.001320	62276.000000	1.000000	1.000000	1.000000	Spectrum25351 scans:4736,	SYQGKKNIPR	S[+42]YQGKKNIPR	M	I	99.600000	42.300000	48.900000	24.300000	Acetyl (+42), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1301.800000	3.000000	0.002300	1.800000	2.000000	11.000000	12.998533	62.910867	3.391367	124.299750	58.704150	0.477700	NaN	NaN	NaN	16.335973	91.272173	5.897003	144.597644	79.712336	0.714104	NaN	NaN	NaN	80.466808	85.492255	0.000000	0.000000	0.000000	0.000000	0.069096	0.093847	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1	PRS10_HUMAN	PRS10_HUMAN	26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1	100.000000	0.014400	44156.900000	2.000000	3.000000	5.000000	Nsco_Tails_biological_replicate1_apoptosis.21873.21873.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21873"	SYSEIGGLSEQIR	S[+28]YSEIGGLSEQIR	V	E	99.600000	60.200000	53.700000	45.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1475.750000	2.000000	-0.002200	-1.500000	131.000000	143.000000	0.872733	0.309467	0.343533	0.073550	0.035850	0.515200	NaN	NaN	NaN	1.096812	0.448980	0.597345	0.085561	0.048679	0.770162	NaN	NaN	NaN	0.591186	0.248830	0.450439	0.431245	1.000000	1.000000	0.069075	0.093809	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4	MIF_HUMAN	MIF_HUMAN	Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4	100.000000	0.161000	12458.500000	2.000000	7.000000	56.000000	Nsco_Tails_biological_replicate1_apoptosis.31170.31170.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31170"	SYSKLLCGLLAER	S[+28]YSKLLC[+57]GLLAER	R	L	99.700000	65.100000	56.200000	36.600000	Dimethyl (+28), Dimethyl (+28), Carbamidomethyl (+57)	1564.860000	2.000000	-0.002200	-1.400000	75.000000	87.000000	17.926967	9.587800	0.474367	4.381150	2.030400	0.820350	NaN	NaN	NaN	22.529806	13.910146	0.824842	5.096583	2.757010	1.226325	NaN	NaN	NaN	13.813194	8.333578	0.199933	0.328738	0.758215	0.787791	0.069055	0.093771	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	MARE1_HUMAN	MARE1_HUMAN	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	100.000000	0.030300	29981.500000	5.000000	15.000000	23.000000	Spectrum35932 scans:5329,	TAAAPKAGPGVVR	T[+28]AAAPKAGPGVVR	R	K	99.400000	33.200000	47.700000	19.700000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1259.800000	3.000000	0.000065	0.052000	169.000000	181.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	MARE1_HUMAN	MARE1_HUMAN	Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3	100.000000	0.030300	29981.500000	5.000000	15.000000	23.000000	Spectrum35931 scans:5328,	TAAAPKAGPGVVR	T[+28]AAAPKAGPGVVR	R	K	99.400000	59.200000	49.200000	37.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1267.770000	2.000000	-0.001500	-1.200000	169.000000	181.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	HTSF1_HUMAN	HTSF1_HUMAN	HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1	100.000000	0.017100	85836.600000	5.000000	8.000000	13.000000	Spectrum16448 scans:6397,	TAEEPPQEKAPEPTDAR	T[+28]AEEPPQEKAPEPTDAR	R	K	99.700000	49.100000	51.500000	33.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1938.970000	3.000000	0.003900	2.000000	96.000000	112.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	PA2G4_HUMAN	PA2G4_HUMAN	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	100.000000	0.023700	43768.700000	6.000000	9.000000	18.000000	Spectrum5070 scans:22705,	TAENATSGETLEENEAGD	T[+28]AENATSGETLEENEAGD	K	-	99.700000	112.000000	39.400000	110.000000	Dimethyl (+28)	1864.780000	2.000000	-0.004200	-2.300000	377.000000	394.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1	SYQ_HUMAN	SYQ_HUMAN	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1	100.000000	0.002330	87781.900000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.57115.57115.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=57115"	TAKDVVENGETADQTLSLMEQLR	T[+28]AKDVVENGETADQTLSLMEQLR	R	G	99.500000	74.900000	59.200000	73.400000	Dimethyl (+28), Dimethyl (+28)	2603.320000	3.000000	0.006600	2.500000	203.000000	225.000000	8.347367	6.524567	92.778467	3.127550	NaN	NaN	NaN	NaN	NaN	10.490595	9.465954	161.325798	3.638273	NaN	NaN	NaN	NaN	NaN	7.064434	9.465954	0.277858	NaN	1.000000	NaN	0.068890	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	NEDD8-activating enzyme E1 regulatory subunit OS=Homo sapiens GN=NAE1 PE=1 SV=1	sp|Q13564|ULA1_HUMAN	ULA1_HUMAN	NEDD8-activating enzyme E1 regulatory subunit OS=Homo sapiens GN=NAE1 PE=1 SV=1	100.000000	0.006590	60230.300000	1.000000	5.000000	5.000000	Spectrum69346 scans:44229,	TALNTTQIPSSIEDIFNDDR	T[+28]ALNTTQIPSSIEDIFNDDR	N	C	99.700000	119.000000	51.400000	104.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2287.110000	2.000000	-0.009900	-4.300000	274.000000	293.000000	0.136500	0.108700	0.912000	7.745850	0.461300	0.056700	NaN	NaN	NaN	0.171547	0.157704	1.585811	9.010731	0.626383	0.084760	NaN	NaN	NaN	4.591139	0.392044	0.487881	0.342982	0.593185	0.553300	0.068870	0.093544	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	NEDD8-activating enzyme E1 regulatory subunit OS=Homo sapiens GN=NAE1 PE=1 SV=1	sp|Q13564-4|ULA1_HUMAN	ULA1_HUMAN	Isoform 4 of NEDD8-activating enzyme E1 regulatory subunit OS=Homo sapiens GN=NAE1	100.000000	0.006590	0.000000	1.000000	5.000000	5.000000	Spectrum69343 scans:44225,	TALNTTQIPSSIEDIFNDDR	T[+28]ALNTTQIPSSIEDIFNDDR	N	C	99.700000	83.700000	52.500000	70.300000	Dimethyl (+28), Label:13C(6) (+6)	2283.130000	2.000000	-0.001200	-0.530000	0.000000	0.000000	0.136500	0.108700	0.912000	7.745850	0.461300	0.056700	NaN	NaN	NaN	0.171547	0.157704	1.585811	9.010731	0.626383	0.084760	NaN	NaN	NaN	4.591139	0.392044	0.487881	0.342982	0.592977	1.000000	0.068849	0.093468	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	NEDD8-activating enzyme E1 regulatory subunit OS=Homo sapiens GN=NAE1 PE=1 SV=1	sp|Q13564|ULA1_HUMAN	ULA1_HUMAN	NEDD8-activating enzyme E1 regulatory subunit OS=Homo sapiens GN=NAE1 PE=1 SV=1	100.000000	0.002310	60230.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.44215.44215.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44215"	TALNTTQIPSSIEDIFNDDR	T[+28]ALNTTQIPSSIEDIFNDDR	N	C	99.700000	95.300000	55.700000	93.000000	Dimethyl (+28)	2277.110000	2.000000	-0.007300	-3.200000	274.000000	293.000000	0.136500	0.108700	0.912000	7.745850	0.461300	0.056700	NaN	NaN	NaN	0.171547	0.157704	1.585811	9.010731	0.626383	0.084760	NaN	NaN	NaN	4.591139	0.392044	0.487881	0.342982	1.000000	1.000000	0.068829	0.093430	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	V-type proton ATPase catalytic subunit A OS=Homo sapiens GN=ATP6V1A PE=1 SV=2	VATA_HUMAN	VATA_HUMAN	V-type proton ATPase catalytic subunit A OS=Homo sapiens GN=ATP6V1A PE=1 SV=2	97.700000	0.002330	68287.400000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.32228.32228.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32228"	TALVANTSNMPVAAR	T[+28]ALVANTSNMPVAAR	R	E	99.700000	69.400000	55.600000	59.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1552.830000	2.000000	-0.001600	-1.000000	309.000000	323.000000	0.277500	NaN	NaN	0.989500	4.323800	2.352100	NaN	NaN	NaN	0.348750	NaN	NaN	1.151083	5.871139	3.516107	NaN	NaN	NaN	0.749916	5.871139	0.312717	NaN	0.532970	NaN	0.068767	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2	RNH2A_HUMAN	RNH2A_HUMAN	Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2	100.000000	0.010500	33377.000000	2.000000	5.000000	8.000000	Spectrum65998 scans:40286,	TAQTILEKEAEDVIWEDSASENQEGLR	T[+28]AQTILEKEAEDVIWEDSASENQEGLR	R	K	99.700000	53.000000	54.200000	49.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	3134.530000	3.000000	-0.006000	-1.900000	240.000000	266.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Protein unc-45 homolog A OS=Homo sapiens GN=UNC45A	sp|Q9H3U1-2|UN45A_HUMAN	UN45A_HUMAN	Isoform 2 of Protein unc-45 homolog A OS=Homo sapiens GN=UNC45A	99.300000	0.002630	101659.400000	1.000000	1.000000	2.000000	Spectrum29070 scans:12556,	TASSVEQLR	T[+42]ASSVEQLR	M	K	99.700000	63.000000	47.400000	41.100000	Acetyl (+42)	1031.520000	2.000000	-0.000230	-0.220000	2.000000	10.000000	1.073500	0.442967	0.437533	0.543750	0.506500	0.872650	1.059071	2.877057	3.725029	1.349127	0.642664	0.760795	0.632543	0.687759	1.304507	0.708338	1.225311	1.785043	0.896669	0.851911	0.058654	0.045027	0.665132	1.000000	0.004686	0.006357	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	TERA_HUMAN	TERA_HUMAN	Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4	100.000000	0.007900	89306.800000	2.000000	3.000000	6.000000	Spectrum21292 scans:2276,	TCSDEKIR	T[+28]C[+57]SDEKIR	D	M	99.000000	42.700000	48.300000	23.000000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1081.560000	3.000000	-0.000650	-0.600000	76.000000	83.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.021100	92453.700000	5.000000	9.000000	16.000000	Spectrum15130 scans:4150,	TDDEVVQR	T[+28]DDEVVQR	R	E	99.000000	54.900000	46.900000	37.500000	Dimethyl (+28), Label:13C(6) (+6)	994.500000	2.000000	-0.000930	-0.930000	44.000000	51.000000	0.588133	1.359367	2.508600	7.931150	1.692300	0.866850	NaN	NaN	NaN	0.739140	1.972193	4.362024	9.226291	2.297916	1.295837	NaN	NaN	NaN	4.982715	2.135054	0.449108	0.048467	1.000000	0.066739	0.068543	0.093129	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.021100	92453.700000	5.000000	9.000000	16.000000	Spectrum21507 scans:3559,	TDDEVVQR	T[+28]DDEVVQR	R	E	99.000000	55.100000	46.000000	38.000000	Dimethyl (+28)	988.480000	2.000000	-0.000160	-0.160000	44.000000	51.000000	0.588133	1.359367	2.508600	7.931150	1.692300	0.866850	NaN	NaN	NaN	0.739140	1.972193	4.362024	9.226291	2.297916	1.295837	NaN	NaN	NaN	4.982715	2.135054	0.449108	0.048467	1.000000	0.056684	0.068523	0.093092	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2	RS4X_HUMAN	RS4X_HUMAN	40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2	100.000000	0.002630	29581.300000	2.000000	2.000000	2.000000	Spectrum12074 scans:43479,	TDITYPAGF	T[+28]DITYPAGF	R	M	99.600000	58.500000	45.700000	48.000000	Dimethyl (+28)	1011.490000	2.000000	-0.000460	-0.460000	78.000000	86.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Rho guanine nucleotide exchange factor (GEF) 7 OS=Homo sapiens GN=ARHGEF7 PE=4 SV=1	B1ALK7_HUMAN	B1ALK7_HUMAN	Rho guanine nucleotide exchange factor (GEF) 7 OS=Homo sapiens GN=ARHGEF7 PE=4 SV=1	99.000000	0.002630	79816.000000	1.000000	2.000000	2.000000	Spectrum5661 scans:24261,	TDNSNNQLVVR	T[+42]DNSNNQLVVR	M	A	99.700000	89.000000	47.900000	65.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1310.640000	2.000000	-0.001900	-1.400000	2.000000	12.000000	0.383833	1.468467	11.261467	0.499950	0.209200	0.424200	0.438657	0.888686	2.230000	0.482384	2.130477	19.581754	0.581591	0.284065	0.634128	0.293387	0.378483	1.068622	0.452454	0.931008	0.033179	0.261110	0.370191	0.432071	0.004669	0.006342	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Rho guanine nucleotide exchange factor (GEF) 7 OS=Homo sapiens GN=ARHGEF7 PE=4 SV=1	sp|Q14155|ARHG7_HUMAN	ARHG7_HUMAN	Rho guanine nucleotide exchange factor 7 OS=Homo sapiens GN=ARHGEF7 PE=1 SV=2	99.000000	0.002630	89996.200000	1.000000	2.000000	2.000000	Spectrum5654 scans:24242,	TDNSNNQLVVR	T[+42]DNSNNQLVVR	M	A	99.700000	74.600000	47.700000	50.900000	Acetyl (+42)	1300.630000	2.000000	-0.002500	-1.900000	180.000000	190.000000	0.383833	1.468467	11.261467	0.499950	0.209200	0.424200	0.438657	0.888686	2.230000	0.482384	2.130477	19.581754	0.581591	0.284065	0.634128	0.293387	0.378483	1.068622	0.452454	0.931008	0.033179	0.261110	0.090725	0.431659	0.004665	0.006340	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=2 SV=1	sp|P61978|HNRPK_HUMAN	HNRPK_HUMAN	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=1 SV=1	100.000000	0.017100	50960.500000	4.000000	8.000000	13.000000	Spectrum6871 scans:27214,	TDYNASVSVPDSSGPER	T[+28]DYNASVSVPDSSGPER	R	I	99.700000	75.500000	47.000000	59.700000	Dimethyl (+28), Label:13C(6) (+6)	1813.840000	2.000000	-0.003900	-2.100000	70.000000	86.000000	NaN	4.077633	NaN	NaN	3.282750	NaN	NaN	NaN	NaN	NaN	5.915901	NaN	NaN	4.457533	NaN	NaN	NaN	NaN	NaN	5.186717	NaN	0.088918	NaN	0.099274	NaN	0.092942	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=2 SV=1	sp|P61978|HNRPK_HUMAN	HNRPK_HUMAN	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=1 SV=1	100.000000	0.014000	50960.500000	3.000000	6.000000	6.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.29616.29616.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29616"	TDYNASVSVPDSSGPER	T[+28]DYNASVSVPDSSGPER	R	I	99.600000	57.800000	49.200000	57.800000	Dimethyl (+28)	1807.820000	2.000000	-0.006400	-3.500000	70.000000	86.000000	NaN	4.077633	NaN	NaN	3.282750	NaN	NaN	NaN	NaN	NaN	5.915901	NaN	NaN	4.457533	NaN	NaN	NaN	NaN	NaN	5.186717	NaN	0.088918	NaN	0.110867	NaN	0.092830	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=2 SV=1	sp|P61978|HNRPK_HUMAN	HNRPK_HUMAN	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=1 SV=1	100.000000	0.014000	50960.500000	3.000000	6.000000	6.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.29645.29645.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29645"	TDYNASVSVPDSSGPER	T[+28]DYNASVSVPDSSGPER	R	I	99.700000	69.200000	49.600000	68.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1817.830000	2.000000	-0.005300	-2.900000	70.000000	86.000000	NaN	4.077633	NaN	NaN	3.282750	NaN	NaN	NaN	NaN	NaN	5.915901	NaN	NaN	4.457533	NaN	NaN	NaN	NaN	NaN	5.186717	NaN	0.088918	NaN	0.110828	NaN	0.092756	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Rho GDP-dissociation inhibitor 2 (Fragment) OS=Homo sapiens GN=ARHGDIB PE=4 SV=1	F5H3P3_HUMAN	F5H3P3_HUMAN	Rho GDP-dissociation inhibitor 2 (Fragment) OS=Homo sapiens GN=ARHGDIB PE=4 SV=1	100.000000	0.002310	17918.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.4027.4027.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4027"	TEKAPEPH	T[+42]EKAPEPH	M	V	98.700000	52.000000	49.400000	33.500000	Acetyl (+42), Dimethyl (+28)	977.480000	2.000000	-0.000200	-0.200000	2.000000	9.000000	3.751433	8.282800	1.895133	1.837750	5.571300	NaN	NaN	NaN	NaN	4.714633	12.016829	3.295311	2.137851	7.565076	NaN	NaN	NaN	NaN	3.426242	9.790953	0.228979	0.087691	1.000000	0.538564	0.068300	0.092645	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Rho GDP-dissociation inhibitor 2 (Fragment) OS=Homo sapiens GN=ARHGDIB PE=4 SV=1	F5H3P3_HUMAN	F5H3P3_HUMAN	Rho GDP-dissociation inhibitor 2 (Fragment) OS=Homo sapiens GN=ARHGDIB PE=4 SV=1	100.000000	0.003950	17918.700000	2.000000	2.000000	3.000000	Spectrum47643 scans:18854,	TEKAPEPHVEEDDDDELDSKLN	T[+42]EKAPEPHVEEDDDDELDSKLN	M	Y	99.700000	65.600000	48.100000	52.600000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	2638.210000	3.000000	-0.004300	-1.600000	2.000000	23.000000	NaN	NaN	0.086300	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.150061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L8 OS=Homo sapiens GN=RPL8 PE=1 SV=2	RL8_HUMAN	RL8_HUMAN	60S ribosomal protein L8 OS=Homo sapiens GN=RPL8 PE=1 SV=2	100.000000	0.003950	28006.800000	2.000000	3.000000	3.000000	Spectrum11860 scans:42610,	TELFIAAEGIH	T[+28]ELFIAAEGIH	R	T	99.700000	83.400000	49.500000	63.600000	Dimethyl (+28)	1227.650000	2.000000	-0.000800	-0.650000	73.000000	83.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3	UB2G1_HUMAN	UB2G1_HUMAN	Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3	99.900000	0.005760	19491.800000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.36621.36621.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36621"	TELQSALLLR	T[+42]ELQSALLLR	M	R	99.700000	83.600000	54.000000	62.800000	Acetyl (+42)	1184.680000	2.000000	0.000260	0.220000	2.000000	11.000000	0.643133	0.368033	0.581967	0.816150	1.187000	1.469400	NaN	NaN	NaN	0.808261	0.533949	1.011940	0.949426	1.611786	2.196577	NaN	NaN	NaN	0.878843	1.072868	0.051019	0.296346	0.793885	1.000000	0.068039	0.092459	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3	UB2G1_HUMAN	UB2G1_HUMAN	Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3	98.900000	0.013400	19491.800000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.31701.31701.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31701"	TELQSALLLR	T[+42]ELQSALLLR	M	R	99.700000	63.900000	54.000000	46.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1194.690000	2.000000	0.000540	0.450000	2.000000	11.000000	0.643133	0.368033	0.581967	0.816150	1.187000	1.469400	NaN	NaN	NaN	0.808261	0.533949	1.011940	0.949426	1.611786	2.196577	NaN	NaN	NaN	0.878843	1.072868	0.051019	0.296346	0.790341	1.000000	0.068019	0.092422	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3	UB2G1_HUMAN	UB2G1_HUMAN	Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3	98.900000	0.013400	19491.800000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.31687.31687.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31687"	TELQSALLLR	T[+42]ELQSALLLR	M	R	99.700000	83.300000	53.900000	63.300000	Acetyl (+42), Label:13C(6) (+6)	1190.700000	2.000000	0.000290	0.240000	2.000000	11.000000	0.643133	0.368033	0.581967	0.816150	1.187000	1.469400	NaN	NaN	NaN	0.808261	0.533949	1.011940	0.949426	1.611786	2.196577	NaN	NaN	NaN	0.878843	1.072868	0.051019	0.296346	1.000000	1.000000	0.067899	0.092386	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4	tr|M0R0F0|M0R0F0_HUMAN	M0R0F0_HUMAN	40S ribosomal protein S5 (Fragment) OS=Homo sapiens GN=RPS5 PE=1 SV=1	100.000000	0.002500	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.45860.45860.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=45860"	TEWETAAPAVAETPDIKLF	T[+42]EWETAAPAVAETPDIKLF	M	G	99.700000	82.300000	57.400000	82.300000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	2166.100000	2.000000	-0.000570	-0.260000	0.000000	0.000000	6.568100	1.796800	0.353767	152.534000	78.546550	0.514600	NaN	NaN	NaN	8.254493	2.606829	0.615139	177.442489	106.655645	0.769265	NaN	NaN	NaN	92.848491	54.631237	0.060689	0.337657	1.000000	0.503511	0.067879	0.092349	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369|FLNB_HUMAN	FLNB_HUMAN	Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2	100.000000	0.018400	278140.800000	8.000000	12.000000	14.000000	Spectrum20891 scans:19159,	TFEMSDFIVDTR	T[+28]FEM[+16]SDFIVDTR	R	D	99.700000	91.800000	45.600000	65.400000	Dimethyl (+28), Oxidation (+16)	1503.690000	2.000000	-0.000920	-0.610000	2017.000000	2028.000000	2.065900	0.588167	0.902700	NaN	1.113000	1.472800	NaN	NaN	NaN	2.596330	0.853322	1.569640	NaN	1.511304	2.201659	NaN	NaN	NaN	2.596330	1.182313	NaN	0.172775	NaN	0.257530	1.000000	0.092312	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Nucleoside diphosphate kinase OS=Homo sapiens GN=NME1-NME2 PE=2 SV=1	sp|P22392-2|NDKB_HUMAN	NDKB_HUMAN	Isoform 3 of Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2	100.000000	0.008640	30119.300000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.17563.17563.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17563"	TFIAIKPDGVQR	T[+28]FIAIKPDGVQR	R	G	99.500000	65.600000	55.000000	43.900000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1417.850000	2.000000	0.004000	2.800000	7.000000	18.000000	21.536033	10.446500	0.573167	2.218850	0.287100	0.129100	NaN	NaN	NaN	27.065519	15.155963	0.996638	2.581184	0.389843	0.192989	NaN	NaN	NaN	14.823351	7.772903	0.339187	0.475194	1.000000	0.959793	0.067820	0.092275	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Nucleoside diphosphate kinase OS=Homo sapiens GN=NME1-NME2 PE=2 SV=1	sp|P22392-2|NDKB_HUMAN	NDKB_HUMAN	Isoform 3 of Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2	100.000000	0.008640	30119.300000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.17562.17562.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17562"	TFIAIKPDGVQR	T[+28]FIAIKPDGVQR	R	G	99.700000	72.900000	55.000000	57.900000	Dimethyl (+28), Dimethyl (+28)	1399.830000	2.000000	0.006500	4.600000	7.000000	18.000000	21.536033	10.446500	0.573167	2.218850	0.287100	0.129100	NaN	NaN	NaN	27.065519	15.155963	0.996638	2.581184	0.389843	0.192989	NaN	NaN	NaN	14.823351	7.772903	0.339187	0.475194	1.000000	1.000000	0.067800	0.092238	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleoside diphosphate kinase OS=Homo sapiens GN=NME1-NME2 PE=2 SV=1	sp|P22392-2|NDKB_HUMAN	NDKB_HUMAN	Isoform 3 of Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2	100.000000	0.048700	30119.300000	6.000000	14.000000	37.000000	Spectrum47683 scans:18901,	TFIAIKPDGVQR	T[+28]FIAIKPDGVQR	R	G	99.300000	34.300000	49.300000	28.400000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1409.860000	3.000000	-0.000210	-0.150000	7.000000	18.000000	21.536033	10.446500	0.573167	2.218850	0.287100	0.129100	NaN	NaN	NaN	27.065519	15.155963	0.996638	2.581184	0.389843	0.192989	NaN	NaN	NaN	14.823351	7.772903	0.339187	0.475194	0.619136	1.000000	0.067780	0.092201	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.017900	73663.300000	3.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.30365.30365.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30365"	TFLGGEDFDQALLR	T[+28]FLGGEDFDQALLR	D	H	99.700000	63.700000	54.600000	50.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1618.820000	2.000000	-0.002700	-1.700000	271.000000	284.000000	0.526567	0.270067	0.517533	1.175650	0.778950	0.662550	NaN	NaN	NaN	0.661765	0.391817	0.899901	1.367631	1.057709	0.990433	NaN	NaN	NaN	1.014698	0.724763	0.213097	0.274149	0.655538	0.310374	0.067760	0.092165	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.011500	64268.600000	2.000000	3.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.21833.21833.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21833"	TFNTSTGGLLLPSDTKR	T[+28]FNTSTGGLLLPSDTKR	R	S	98.800000	78.800000	58.000000	58.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1881.040000	3.000000	0.005200	2.800000	252.000000	268.000000	8.183133	4.864167	0.740867	3.988800	42.360150	4.923300	NaN	NaN	NaN	10.284194	7.057017	1.288240	4.640163	57.519384	7.359743	NaN	NaN	NaN	7.462179	32.288200	0.223421	0.108770	0.686690	0.123103	0.067740	0.092128	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.162000	15036.300000	9.000000	26.000000	123.000000	Spectrum63024 scans:36976,	TFVNITPAEVGVLVGKDR	T[+28]FVNITPAEVGVLVGKDR	K	S	99.700000	103.000000	52.500000	81.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1980.160000	3.000000	-0.000940	-0.480000	39.000000	56.000000	50.333400	25.768900	0.527667	NaN	NaN	NaN	NaN	NaN	NaN	63.256755	37.385966	0.917522	NaN	NaN	NaN	NaN	NaN	NaN	63.256755	37.385966	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.049000	15036.300000	3.000000	13.000000	21.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.61773.61773.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=61773"	TFVNITPAEVGVLVGKDR	T[+28]FVNITPAEVGVLVGKDR	K	S	99.700000	83.700000	58.400000	54.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1988.140000	3.000000	-0.004600	-2.300000	39.000000	56.000000	50.333400	25.768900	0.527667	NaN	NaN	NaN	NaN	NaN	NaN	63.256755	37.385966	0.917522	NaN	NaN	NaN	NaN	NaN	NaN	63.256755	37.385966	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.190000	15036.300000	6.000000	16.000000	82.000000	Nsco_Tails_biological_replicate_3_fraction6A.37102.37102.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37102"	TFVNITPAEVGVLVGKDR	T[+28]FVNITPAEVGVLVGKDR	K	S	99.500000	84.700000	58.400000	70.500000	Dimethyl (+28), Dimethyl (+28)	1970.120000	3.000000	0.001200	0.620000	39.000000	56.000000	50.333400	25.768900	0.527667	NaN	NaN	NaN	NaN	NaN	NaN	63.256755	37.385966	0.917522	NaN	NaN	NaN	NaN	NaN	NaN	63.256755	37.385966	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.030300	53123.900000	9.000000	17.000000	23.000000	Spectrum47912 scans:19159,	TGDIIIDGGNSEYR	T[+28]GDIIIDGGNSEYR	D	D	99.500000	65.900000	49.100000	42.300000	Dimethyl (+28), Label:13C(6) (+6)	1542.760000	2.000000	-0.003300	-2.100000	94.000000	107.000000	0.492133	0.293500	0.613200	0.462950	0.179300	0.281650	NaN	NaN	NaN	0.618491	0.425815	1.066249	0.538549	0.243465	0.421033	NaN	NaN	NaN	0.578520	0.334640	0.043916	0.169341	0.073017	0.182886	0.067661	0.091945	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.011700	53123.900000	4.000000	5.000000	5.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.34621.34621.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34621"	TGDIIIDGGNSEYR	T[+28]GDIIIDGGNSEYR	D	D	99.700000	73.600000	52.100000	64.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1546.750000	2.000000	-0.004600	-3.000000	94.000000	107.000000	0.492133	0.293500	0.613200	0.462950	0.179300	0.281650	NaN	NaN	NaN	0.618491	0.425815	1.066249	0.538549	0.243465	0.421033	NaN	NaN	NaN	0.578520	0.334640	0.043916	0.169341	0.072947	0.301185	0.067641	0.091908	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.032400	53123.900000	8.000000	14.000000	14.000000	Nsco_Tails_biological_replicate_3_fraction6A.19160.19160.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19160"	TGDIIIDGGNSEYR	T[+28]GDIIIDGGNSEYR	D	D	98.800000	60.600000	52.300000	41.500000	Dimethyl (+28)	1536.750000	2.000000	0.003200	2.100000	94.000000	107.000000	0.492133	0.293500	0.613200	0.462950	0.179300	0.281650	NaN	NaN	NaN	0.618491	0.425815	1.066249	0.538549	0.243465	0.421033	NaN	NaN	NaN	0.578520	0.334640	0.043916	0.169341	0.072878	0.301031	0.067622	0.091872	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6	sp|Q15084|PDIA6_HUMAN	PDIA6_HUMAN	Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1	100.000000	0.014400	48104.300000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate1_apoptosis.39030.39030.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39030"	TGEAIVDAALSALR	T[+28]GEAIVDAALSALR	R	Q	99.700000	97.200000	55.300000	70.200000	Dimethyl (+28)	1413.780000	2.000000	0.000380	0.270000	119.000000	132.000000	0.689567	0.268300	0.497167	0.988850	0.453550	0.464050	NaN	NaN	NaN	0.866616	0.389254	0.864487	1.150327	0.615860	0.693699	NaN	NaN	NaN	1.008472	0.502557	0.088966	0.141167	0.345314	0.218391	0.067562	0.091835	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6	sp|Q15084|PDIA6_HUMAN	PDIA6_HUMAN	Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1	100.000000	0.014400	48104.300000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate1_apoptosis.39074.39074.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39074"	TGEAIVDAALSALR	T[+28]GEAIVDAALSALR	R	Q	99.700000	97.500000	55.500000	70.400000	Dimethyl (+28), Label:13C(6) (+6)	1419.800000	2.000000	0.000970	0.680000	119.000000	132.000000	0.689567	0.268300	0.497167	0.988850	0.453550	0.464050	NaN	NaN	NaN	0.866616	0.389254	0.864487	1.150327	0.615860	0.693699	NaN	NaN	NaN	1.008472	0.502557	0.088966	0.141167	0.344928	0.218099	0.067543	0.091763	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6	sp|Q15084|PDIA6_HUMAN	PDIA6_HUMAN	Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1	100.000000	0.014400	48104.300000	2.000000	5.000000	5.000000	Nsco_Tails_biological_replicate1_apoptosis.39034.39034.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39034"	TGEAIVDAALSALR	T[+28]GEAIVDAALSALR	R	Q	99.700000	96.800000	55.400000	70.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1423.790000	2.000000	-0.000770	-0.540000	119.000000	132.000000	0.689567	0.268300	0.497167	0.988850	0.453550	0.464050	NaN	NaN	NaN	0.866616	0.389254	0.864487	1.150327	0.615860	0.693699	NaN	NaN	NaN	1.008472	0.502557	0.088966	0.141167	0.344543	0.218002	0.067483	0.091726	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 3 of NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C	sp|Q9UNZ2|NSF1C_HUMAN	NSF1C_HUMAN	NSFL1 cofactor p47 OS=Homo sapiens GN=NSFL1C PE=1 SV=2	100.000000	0.014500	40555.200000	6.000000	10.000000	11.000000	Spectrum63243 scans:37221,	TGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIR	T[+28]GEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIR	F	L	99.300000	41.000000	60.500000	36.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	5078.620000	4.000000	0.006300	1.200000	254.000000	301.000000	NaN	NaN	NaN	1.600550	2.130650	1.442900	NaN	NaN	NaN	NaN	NaN	NaN	1.861917	2.893136	2.156962	NaN	NaN	NaN	1.861917	2.893136	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	RS28_HUMAN	RS28_HUMAN	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	100.000000	0.017300	7822.900000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.2483.2483.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2483"	TGSQGQCTQVR	TGSQGQC[+57]TQVR	R	V	99.700000	70.200000	47.700000	57.500000	Carbamidomethyl (+57)	1220.560000	2.000000	-0.001000	-0.840000	21.000000	31.000000	0.442200	0.817300	0.988033	NaN	NaN	NaN	NaN	NaN	NaN	0.555737	1.185753	1.718020	NaN	NaN	NaN	NaN	NaN	NaN	0.555737	1.185753	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	RS28_HUMAN	RS28_HUMAN	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	100.000000	0.031600	7822.900000	4.000000	14.000000	24.000000	Spectrum14039 scans:2470,	TGSQGQCTQVR	TGSQGQC[+57]TQVR	R	V	99.700000	72.300000	46.200000	26.500000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1258.600000	2.000000	-0.000580	-0.460000	21.000000	31.000000	0.442200	0.817300	0.988033	NaN	NaN	NaN	NaN	NaN	NaN	0.555737	1.185753	1.718020	NaN	NaN	NaN	NaN	NaN	NaN	0.555737	1.185753	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	RS28_HUMAN	RS28_HUMAN	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	100.000000	0.031600	7822.900000	4.000000	14.000000	24.000000	Spectrum14038 scans:2469,	TGSQGQCTQVR	TGSQGQC[+57]TQVR	R	V	99.700000	89.700000	45.900000	69.100000	Dimethyl (+28), Carbamidomethyl (+57)	1248.590000	2.000000	-0.000130	-0.100000	21.000000	31.000000	0.442200	0.817300	0.988033	NaN	NaN	NaN	NaN	NaN	NaN	0.555737	1.185753	1.718020	NaN	NaN	NaN	NaN	NaN	NaN	0.555737	1.185753	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Nuclear receptor 2C2-associated protein OS=Homo sapiens GN=NR2C2AP PE=1 SV=1	sp|Q86WQ0-2|NR2CA_HUMAN	NR2CA_HUMAN	Isoform 2 of Nuclear receptor 2C2-associated protein OS=Homo sapiens GN=NR2C2AP	98.000000	0.002360	0.000000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.29676.29676.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29676"	THSLVCPETVSR	T[+42]HSLVC[+57]PETVSR	M	V	99.700000	66.400000	51.200000	49.700000	Acetyl (+42), Carbamidomethyl (+57)	1426.680000	2.000000	-0.003400	-2.400000	0.000000	0.000000	0.659900	0.565400	0.840433	0.370300	0.435300	0.505950	NaN	NaN	NaN	0.829333	0.820292	1.461369	0.430769	0.591079	0.756335	NaN	NaN	NaN	0.630051	0.705685	0.195021	0.102495	0.902297	0.515447	0.067366	0.091400	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	sp|P53396|ACLY_HUMAN	ACLY_HUMAN	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	100.000000	0.014400	120824.800000	4.000000	5.000000	5.000000	Nsco_Tails_biological_replicate1_apoptosis.36558.36558.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36558"	TIAIIAEGIPEALTR	T[+28]IAIIAEGIPEALTR	R	K	99.700000	79.000000	56.100000	55.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1604.950000	2.000000	0.007500	4.700000	593.000000	607.000000	0.520767	0.226200	0.432167	0.484050	0.293700	0.657750	NaN	NaN	NaN	0.654476	0.328175	0.751464	0.563094	0.398805	0.983257	NaN	NaN	NaN	0.608785	0.363490	0.047691	0.061658	0.220354	0.309627	0.067346	0.091328	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	sp|P53396|ACLY_HUMAN	ACLY_HUMAN	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	100.000000	0.014400	120824.800000	4.000000	5.000000	5.000000	Nsco_Tails_biological_replicate1_apoptosis.36549.36549.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=36549"	TIAIIAEGIPEALTR	T[+28]IAIIAEGIPEALTR	R	K	99.700000	89.000000	56.200000	63.400000	Dimethyl (+28)	1594.930000	2.000000	0.001700	1.000000	593.000000	607.000000	0.520767	0.226200	0.432167	0.484050	0.293700	0.657750	NaN	NaN	NaN	0.654476	0.328175	0.751464	0.563094	0.398805	0.983257	NaN	NaN	NaN	0.608785	0.363490	0.047691	0.061658	0.220061	0.119193	0.067307	0.091292	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4	RL13_HUMAN	RL13_HUMAN	60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4	100.000000	0.006590	24244.200000	3.000000	4.000000	5.000000	Spectrum7475 scans:28755,	TIGISVDPR	NaN	R	R	99.000000	52.700000	48.100000	19.500000	Dimethyl (+28)	984.560000	2.000000	0.000260	0.260000	93.000000	101.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Eukaryotic translation initiation factor 5B OS=Homo sapiens GN=EIF5B PE=1 SV=4	IF2P_HUMAN	IF2P_HUMAN	Eukaryotic translation initiation factor 5B OS=Homo sapiens GN=EIF5B PE=1 SV=4	100.000000	0.002500	138813.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.33744.33744.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33744"	TIIVPGVEGPIVTQIR	T[+28]IIVPGVEGPIVTQIR	D	G	99.600000	67.100000	56.000000	54.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1729.050000	2.000000	0.007400	4.300000	887.000000	902.000000	NaN	NaN	NaN	0.930550	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	1.082507	NaN	NaN	NaN	NaN	NaN	1.082507	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4	DNJB1_HUMAN	DNJB1_HUMAN	DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4	100.000000	0.006590	38027.600000	2.000000	3.000000	5.000000	Spectrum58553 scans:31518,	TIPVVFKDVIR	T[+28]IPVVFKDVIR	R	P	99.700000	40.000000	46.000000	28.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1351.890000	3.000000	0.001400	1.000000	280.000000	290.000000	38.257033	8.842067	0.308300	NaN	NaN	NaN	NaN	NaN	NaN	48.079720	12.828223	0.536081	NaN	NaN	NaN	NaN	NaN	NaN	48.079720	12.828223	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4	DNJB1_HUMAN	DNJB1_HUMAN	DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4	100.000000	0.006590	38027.600000	2.000000	3.000000	5.000000	Spectrum58522 scans:31467,	TIPVVFKDVIR	T[+28]IPVVFKDVIR	R	P	99.700000	53.200000	47.700000	33.400000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1359.860000	3.000000	0.002000	1.500000	280.000000	290.000000	38.257033	8.842067	0.308300	NaN	NaN	NaN	NaN	NaN	NaN	48.079720	12.828223	0.536081	NaN	NaN	NaN	NaN	NaN	NaN	48.079720	12.828223	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	FKBP4_HUMAN	FKBP4_HUMAN	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	100.000000	0.015800	51787.900000	5.000000	9.000000	12.000000	Spectrum26986 scans:7687,	TKFDSSLDR	T[+28]KFDSSLDR	G	K	99.700000	41.600000	49.000000	15.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1141.610000	3.000000	-0.000120	-0.110000	65.000000	73.000000	15.439300	8.760867	8.925933	37.473700	7.883250	27.312800	NaN	NaN	NaN	19.403418	12.710417	15.520663	43.593078	10.704393	40.829359	NaN	NaN	NaN	31.498248	11.707405	0.000000	0.000000	0.000000	0.000000	0.067073	0.091076	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	FKBP4_HUMAN	FKBP4_HUMAN	Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3	100.000000	0.015800	51787.900000	5.000000	9.000000	12.000000	Spectrum26984 scans:7683,	TKFDSSLDR	T[+28]KFDSSLDR	G	K	99.700000	48.700000	49.600000	18.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1133.630000	3.000000	-0.000130	-0.120000	65.000000	73.000000	15.439300	8.760867	8.925933	37.473700	7.883250	27.312800	NaN	NaN	NaN	19.403418	12.710417	15.520663	43.593078	10.704393	40.829359	NaN	NaN	NaN	31.498248	11.707405	0.000000	0.000000	0.000000	0.000000	0.067053	0.091040	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=1 SV=2	E9PEX6_HUMAN	E9PEX6_HUMAN	Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=4 SV=1	100.000000	0.007900	51797.700000	4.000000	4.000000	6.000000	Spectrum60692 scans:34108,	TKNLGLEELGIELDPR	T[+28]KNLGLEELGIELDPR	F	G	99.700000	45.500000	52.700000	22.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1862.080000	3.000000	-0.000015	-0.007900	296.000000	311.000000	1.803900	0.540100	0.362200	0.583450	NaN	2.532700	NaN	NaN	NaN	2.267060	0.783586	0.629804	0.678726	NaN	3.786083	NaN	NaN	NaN	1.472893	0.783586	0.314812	NaN	1.000000	NaN	0.067034	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4	TCPD_HUMAN	TCPD_HUMAN	T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4	100.000000	0.004670	57907.900000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.56012.56012.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=56012"	TLAENAGLNPISTVTELR	T[+28]LAENAGLNPISTVTELR	S	N	99.700000	89.800000	58.000000	73.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1936.050000	2.000000	-0.005200	-2.700000	464.000000	481.000000	1.771000	0.413100	0.570900	NaN	NaN	NaN	NaN	NaN	NaN	2.225713	0.599333	0.992697	NaN	NaN	NaN	NaN	NaN	NaN	2.225713	0.599333	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.030700	60327.200000	3.000000	9.000000	13.000000	NSco_TAILS_20150124_Protein_complex_100Kda.50921.50921.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=50921"	TLAVNAAQDSTDLVAKLR	T[+28]LAVNAAQDSTDLVAKLR	N	A	99.400000	63.000000	58.300000	54.800000	Dimethyl (+28), Dimethyl (+28)	1941.090000	2.000000	-0.004200	-2.200000	451.000000	468.000000	19.411700	7.862000	0.447767	1.515150	1.767550	1.234900	NaN	NaN	NaN	24.395752	11.406326	0.778589	1.762571	2.400095	1.846027	NaN	NaN	NaN	13.079162	6.903210	0.388932	0.350042	1.000000	1.000000	0.066995	0.090826	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.040300	19463.200000	5.000000	11.000000	14.000000	Nsco_Tails_biological_replicate1_apoptosis.41902.41902.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41902"	TLGLYGKDQQEAALVDMVNDGVEDLR	T[+28]LGLYGKDQQEAALVDMVNDGVEDLR	R	C	99.000000	75.600000	59.700000	75.500000	Dimethyl (+28), Dimethyl (+28)	2904.450000	3.000000	-0.001900	-0.650000	76.000000	101.000000	97.511300	58.151333	0.561600	3.135750	5.828600	0.761850	NaN	NaN	NaN	122.547820	84.366960	0.976526	3.647812	7.914454	1.138874	NaN	NaN	NaN	63.097816	46.140707	0.277322	0.073781	1.000000	0.185792	0.066975	0.090790	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.040300	19463.200000	5.000000	11.000000	14.000000	Nsco_Tails_biological_replicate1_apoptosis.33911.33911.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33911"	TLGLYGKDQQEAALVDMVNDGVEDLR	T[+28]LGLYGKDQQEAALVDMVNDGVEDLR	R	C	99.400000	82.500000	59.100000	79.500000	Dimethyl (+28), Dimethyl (+28), Oxidation (+16)	2920.440000	3.000000	-0.005100	-1.700000	76.000000	101.000000	97.511300	58.151333	0.561600	3.135750	5.828600	0.761850	NaN	NaN	NaN	122.547820	84.366960	0.976526	3.647812	7.914454	1.138874	NaN	NaN	NaN	63.097816	46.140707	0.277322	0.073781	1.000000	0.185657	0.066956	0.090755	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.021200	19463.200000	4.000000	8.000000	9.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64453.64453.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64453"	TLGLYGKDQQEAALVDMVNDGVEDLR	T[+28]LGLYGKDQQEAALVDMVNDGVEDLR	R	C	99.500000	75.000000	60.800000	75.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2914.490000	3.000000	-0.009400	-3.200000	76.000000	101.000000	97.511300	58.151333	0.561600	3.135750	5.828600	0.761850	NaN	NaN	NaN	122.547820	84.366960	0.976526	3.647812	7.914454	1.138874	NaN	NaN	NaN	63.097816	46.140707	0.277322	0.073781	0.571102	0.185522	0.066937	0.090719	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.003950	19463.200000	2.000000	3.000000	3.000000	Spectrum62322 scans:36164,	TLGLYGKDQQEAALVDMVNDGVEDLR	T[+28]LGLYGKDQQEAALVDMVNDGVEDLR	R	C	99.400000	45.400000	54.900000	39.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Oxidation (+16), Label:13C(6)15N(4) (+10)	2938.470000	3.000000	-0.004900	-1.700000	76.000000	101.000000	97.511300	58.151333	0.561600	3.135750	5.828600	0.761850	NaN	NaN	NaN	122.547820	84.366960	0.976526	3.647812	7.914454	1.138874	NaN	NaN	NaN	63.097816	46.140707	0.277322	0.073781	1.000000	0.873791	0.066917	0.090683	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.003950	19463.200000	2.000000	3.000000	3.000000	Spectrum69989 scans:45050,	TLGLYGKDQQEAALVDMVNDGVEDLR	T[+28]LGLYGKDQQEAALVDMVNDGVEDLR	R	C	99.700000	59.900000	55.400000	49.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2922.480000	3.000000	0.000120	0.039000	76.000000	101.000000	97.511300	58.151333	0.561600	3.135750	5.828600	0.761850	NaN	NaN	NaN	122.547820	84.366960	0.976526	3.647812	7.914454	1.138874	NaN	NaN	NaN	63.097816	46.140707	0.277322	0.073781	1.000000	0.870819	0.066859	0.090648	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	sp|P49368|TCPG_HUMAN	TCPG_HUMAN	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	100.000000	0.017300	60517.400000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.12800.12800.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12800"	TLIQNCGASTIR	T[+28]LIQNC[+57]GASTIR	R	L	99.200000	55.400000	54.000000	41.300000	Dimethyl (+28), Carbamidomethyl (+57)	1360.710000	2.000000	-0.001000	-0.740000	450.000000	461.000000	0.600800	0.237967	0.395733	2.156100	0.554250	0.258650	NaN	NaN	NaN	0.755058	0.345246	0.688112	2.508187	0.752597	0.386651	NaN	NaN	NaN	1.631623	0.548922	0.313847	0.226191	1.000000	1.000000	0.066840	0.090612	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.079000	62047.800000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate_3_fraction2A.14969.14969.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14969"	TLLDIDNTR	TLLDIDNTR	K	M	98.800000	56.300000	52.100000	34.800000		1059.560000	2.000000	-0.000330	-0.310000	225.000000	233.000000	9.049333	5.013967	0.582900	0.214800	0.780700	2.845700	NaN	NaN	NaN	11.372795	7.274350	1.013563	0.249876	1.060086	4.253980	NaN	NaN	NaN	5.811336	4.167218	0.484096	0.407874	1.000000	0.418116	0.066782	0.090577	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.030300	62047.800000	7.000000	12.000000	23.000000	Spectrum20211 scans:15210,	TLLDIDNTR	TLLDIDNTR	K	M	98.800000	50.600000	48.700000	26.700000	Dimethyl (+28)	1087.590000	2.000000	-0.000200	-0.190000	225.000000	233.000000	9.049333	5.013967	0.582900	0.214800	0.780700	2.845700	NaN	NaN	NaN	11.372795	7.274350	1.013563	0.249876	1.060086	4.253980	NaN	NaN	NaN	5.811336	4.167218	0.484096	0.407874	1.000000	0.417993	0.066763	0.090541	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Zinc finger protein 780A OS=Homo sapiens GN=ZNF780A PE=2 SV=3	sp|O75290|Z780A_HUMAN	Z780A_HUMAN	Zinc finger protein 780A OS=Homo sapiens GN=ZNF780A PE=2 SV=3	95.800000	0.002630	74513.200000	1.000000	1.000000	2.000000	Spectrum46116 scans:17076,	TLLTKLVR	NaN	F	H	99.000000	28.800000	42.200000	0.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1016.710000	3.000000	-0.000650	-0.640000	343.000000	350.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3	sp|P37802-2|TAGL2_HUMAN	TAGL2_HUMAN	Isoform 2 of Transgelin-2 OS=Homo sapiens GN=TAGLN2	91.200000	0.002880	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.21101.21101.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21101"	TLMNLGGLAVAR	T[+28]LM[+16]NLGGLAVAR	R	D	99.000000	53.900000	54.300000	43.700000	Dimethyl (+28), Oxidation (+16)	1258.710000	2.000000	-0.001300	-1.000000	0.000000	0.000000	7.216500	0.921500	0.176733	1.015250	0.667600	0.517700	NaN	NaN	NaN	9.069373	1.336928	0.307309	1.181038	0.906511	0.773899	NaN	NaN	NaN	5.125206	1.121720	0.417562	0.120673	1.000000	0.143501	0.066667	0.090471	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum55114 scans:27372,	TLTDSLVCKAGIIASAR	T[+28]LTDSLVC[+57]KAGIIASAR	S	A	99.200000	37.300000	52.500000	31.200000	Dimethyl (+28), Carbamidomethyl (+57), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1841.070000	3.000000	-0.000660	-0.360000	34.000000	50.000000	8.978533	3.400333	0.270000	1.439850	0.318000	0.602550	NaN	NaN	NaN	11.283817	4.933262	0.469484	1.674975	0.431801	0.900740	NaN	NaN	NaN	6.479396	2.682532	0.394349	0.444419	1.000000	0.528309	1.000000	0.090435	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum55147 scans:27413,	TLTDSLVCKAGIIASAR	T[+28]LTDSLVC[+57]KAGIIASAR	S	A	99.300000	39.100000	53.100000	26.800000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1849.050000	3.000000	0.001300	0.700000	34.000000	50.000000	8.978533	3.400333	0.270000	1.439850	0.318000	0.602550	NaN	NaN	NaN	11.283817	4.933262	0.469484	1.674975	0.431801	0.900740	NaN	NaN	NaN	6.479396	2.682532	0.394349	0.444419	1.000000	0.537329	1.000000	0.090400	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2	sp|P09960|LKHA4_HUMAN	LKHA4_HUMAN	Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2	100.000000	0.010500	69269.100000	3.000000	7.000000	8.000000	Spectrum51245 scans:22973,	TLTGTAALTVQSQEDNLR	T[+28]LTGTAALTVQSQEDNLR	R	S	99.700000	111.000000	52.800000	87.400000	Dimethyl (+28)	1945.010000	2.000000	-0.001400	-0.720000	34.000000	51.000000	0.833433	2.540033	2.226333	3.957000	1.773900	0.353200	NaN	NaN	NaN	1.047422	3.685124	3.871211	4.603170	2.408717	0.527992	NaN	NaN	NaN	2.825296	3.046921	0.357566	0.131445	1.000000	0.158870	1.000000	0.090365	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2	sp|P09960|LKHA4_HUMAN	LKHA4_HUMAN	Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2	100.000000	0.010500	69269.100000	3.000000	7.000000	8.000000	Spectrum51236 scans:22962,	TLTGTAALTVQSQEDNLR	T[+28]LTGTAALTVQSQEDNLR	R	S	99.700000	114.000000	53.200000	89.600000	Dimethyl (+28), Label:13C(6) (+6)	1951.030000	2.000000	-0.002900	-1.500000	34.000000	51.000000	0.833433	2.540033	2.226333	3.957000	1.773900	0.353200	NaN	NaN	NaN	1.047422	3.685124	3.871211	4.603170	2.408717	0.527992	NaN	NaN	NaN	2.825296	3.046921	0.357566	0.131445	0.492363	0.159816	1.000000	0.090329	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	A8MX94_HUMAN	A8MX94_HUMAN	Glutathione S-transferase P OS=Homo sapiens GN=GSTP1 PE=3 SV=1	100.000000	0.040300	19463.200000	5.000000	11.000000	14.000000	Nsco_Tails_biological_replicate1_apoptosis.17523.17523.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17523"	TLYQSNTILR	T[+28]LYQSNTILR	L	H	98.600000	52.100000	54.100000	30.000000	Dimethyl (+28)	1235.680000	2.000000	-0.002900	-2.300000	62.000000	71.000000	0.544367	0.260400	0.495867	NaN	NaN	NaN	NaN	NaN	NaN	0.684136	0.377793	0.862227	NaN	NaN	NaN	NaN	NaN	NaN	0.684136	0.377793	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1	XPO1_HUMAN	XPO1_HUMAN	Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1	94.200000	0.004670	123370.900000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.24742.24742.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24742"	TMLADHAAR	T[+42]MLADHAAR	M	Q	99.200000	52.300000	48.700000	41.500000	Acetyl (+42)	1026.490000	2.000000	-0.000350	-0.340000	6.000000	14.000000	0.850533	0.391433	0.486067	0.391450	0.261700	0.666800	3.352743	5.489157	1.867586	1.068912	0.567898	0.845186	0.455373	0.355353	0.996786	2.242412	2.337780	0.894952	1.255566	1.087010	0.138915	0.225799	0.148547	0.246158	0.438131	0.006154	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1	PRS4_HUMAN	PRS4_HUMAN	26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1	100.000000	0.008640	49168.400000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.37730.37730.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37730"	TMLELLNQLDGFDSR	T[+28]MLELLNQLDGFDSR	R	G	99.700000	66.300000	53.900000	58.500000	Dimethyl (+28), Oxidation (+16)	1794.880000	2.000000	-0.006200	-3.500000	308.000000	322.000000	0.773600	0.164400	0.212500	0.349600	0.121500	0.475450	NaN	NaN	NaN	0.972226	0.238514	0.369501	0.406689	0.164981	0.710741	NaN	NaN	NaN	0.689457	0.201748	0.247779	0.114759	0.264878	1.000000	1.000000	0.090224	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1	PRS4_HUMAN	PRS4_HUMAN	26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1	100.000000	0.008640	49168.400000	1.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.43002.43002.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=43002"	TMLELLNQLDGFDSR	T[+28]MLELLNQLDGFDSR	R	G	99.700000	102.000000	54.500000	0.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1788.890000	2.000000	-0.010000	-5.800000	308.000000	322.000000	0.773600	0.164400	0.212500	0.349600	0.121500	0.475450	NaN	NaN	NaN	0.972226	0.238514	0.369501	0.406689	0.164981	0.710741	NaN	NaN	NaN	0.689457	0.201748	0.247779	0.114759	0.528778	1.000000	1.000000	0.090188	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum64533 scans:38660,	TNGDTFLGGEDFDQALLR	T[+28]NGDTFLGGEDFDQALLR	S	H	99.200000	66.300000	49.300000	39.500000	Dimethyl (+28)	1995.950000	2.000000	-0.005200	-2.600000	267.000000	284.000000	0.246300	0.474633	1.965567	0.934700	1.129350	3.674250	NaN	NaN	NaN	0.309539	0.688606	3.417782	1.087335	1.533505	5.492563	NaN	NaN	NaN	0.698437	1.111056	0.323440	0.231311	1.000000	1.000000	1.000000	0.090153	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.053200	73663.300000	10.000000	19.000000	23.000000	Nsco_Tails_biological_replicate_3_fraction6A.38619.38619.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38619"	TNGDTFLGGEDFDQALLR	T[+28]NGDTFLGGEDFDQALLR	S	H	99.700000	77.700000	54.200000	71.100000	Dimethyl (+28), Label:13C(6) (+6)	2001.970000	2.000000	-0.008900	-4.400000	267.000000	284.000000	0.246300	0.474633	1.965567	0.934700	1.129350	3.674250	NaN	NaN	NaN	0.309539	0.688606	3.417782	1.087335	1.533505	5.492563	NaN	NaN	NaN	0.698437	1.111056	0.323440	0.231311	1.000000	0.481204	1.000000	0.090118	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1	SND1_HUMAN	SND1_HUMAN	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1	100.000000	0.004480	101980.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.22124.22124.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22124"	TPDEPWAFPAR	T[+28]PDEPWAFPAR	D	E	98.700000	53.700000	51.300000	39.700000	Dimethyl (+28)	1313.640000	2.000000	0.001400	1.100000	73.000000	83.000000	1.025267	0.733033	0.435400	0.877700	0.996350	1.152250	NaN	NaN	NaN	1.288509	1.063497	0.757086	1.021027	1.352909	1.722476	NaN	NaN	NaN	1.154768	1.208203	0.073404	0.075886	0.438403	0.085551	1.000000	0.090083	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	PLPP_HUMAN	PLPP_HUMAN	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	100.000000	0.011900	31680.800000	6.000000	9.000000	9.000000	Spectrum53510 scans:25561,	TPGTGSLAAAVETASGR	T[+28]PGTGSLAAAVETASGR	R	Q	99.700000	53.800000	50.900000	32.400000	Dimethyl (+28)	1572.810000	3.000000	-0.001600	-1.000000	190.000000	206.000000	2.279067	2.781033	1.055667	0.728300	0.530050	0.730700	NaN	NaN	NaN	2.864229	4.034771	1.835623	0.847230	0.719737	1.092309	NaN	NaN	NaN	1.855729	2.377254	0.316911	0.387620	1.000000	0.436843	1.000000	0.090048	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	PLPP_HUMAN	PLPP_HUMAN	Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2	100.000000	0.011900	31680.800000	6.000000	9.000000	9.000000	Spectrum53514 scans:25566,	TPGTGSLAAAVETASGR	T[+28]PGTGSLAAAVETASGR	R	Q	99.700000	68.100000	51.500000	50.700000	Dimethyl (+28), Label:13C(6) (+6)	1578.830000	3.000000	0.002800	1.800000	190.000000	206.000000	2.279067	2.781033	1.055667	0.728300	0.530050	0.730700	NaN	NaN	NaN	2.864229	4.034771	1.835623	0.847230	0.719737	1.092309	NaN	NaN	NaN	1.855729	2.377254	0.316911	0.387620	1.000000	1.000000	1.000000	0.090013	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.029000	31307.200000	7.000000	15.000000	22.000000	Spectrum2465 scans:16018,	TQAPAVATT	T[+28]QAPAVATT	R	-	99.200000	54.600000	46.900000	29.900000	Dimethyl (+28)	886.480000	2.000000	0.000160	0.180000	285.000000	293.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	RS3A_HUMAN	RS3A_HUMAN	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	100.000000	0.009220	29927.300000	6.000000	7.000000	7.000000	Spectrum15525 scans:4795,	TQGTKIASDGLKGR	T[+28]QGTKIASDGLKGR	R	V	98.600000	24.600000	49.200000	14.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1528.950000	4.000000	-0.001100	-0.740000	52.000000	65.000000	3.000300	0.832300	0.399133	3.029150	0.359000	0.269350	NaN	NaN	NaN	3.770642	1.207515	0.694024	3.523804	0.487474	0.402646	NaN	NaN	NaN	3.647223	0.847494	0.021534	0.255734	0.023049	1.000000	1.000000	0.089943	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	RS3A_HUMAN	RS3A_HUMAN	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	100.000000	0.009220	29927.300000	6.000000	7.000000	7.000000	Spectrum15532 scans:4804,	TQGTKIASDGLKGR	T[+28]QGTKIASDGLKGR	R	V	99.300000	35.800000	50.800000	24.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1540.910000	3.000000	-0.000510	-0.330000	52.000000	65.000000	3.000300	0.832300	0.399133	3.029150	0.359000	0.269350	NaN	NaN	NaN	3.770642	1.207515	0.694024	3.523804	0.487474	0.402646	NaN	NaN	NaN	3.647223	0.847494	0.021534	0.255734	0.023042	1.000000	1.000000	0.089838	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH	tr|K7ELL7|K7ELL7_HUMAN	K7ELL7_HUMAN	Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=1	100.000000	0.026900	0.000000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis.11999.11999.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11999"	TQTDATSFYDR	T[+28]QTDATSFYDR	D	V	99.700000	56.000000	47.300000	39.900000	Dimethyl (+28)	1331.600000	2.000000	-0.000950	-0.710000	0.000000	0.000000	6.829333	1.477267	2.934900	1.613650	11.598300	1.376750	NaN	NaN	NaN	8.582799	2.143244	5.103286	1.877156	15.748931	2.058076	NaN	NaN	NaN	5.229977	8.946087	0.362923	0.365590	0.600544	1.000000	1.000000	0.089803	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.015000	82573.600000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.31166.31166.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31166"	TQYILPNDIGVSSLDCR	T[+28]QYILPNDIGVSSLDC[+57]R	D	E	99.000000	56.000000	55.800000	49.900000	Dimethyl (+28), Carbamidomethyl (+57)	1977.990000	2.000000	0.002200	1.100000	4.000000	20.000000	0.448967	0.414367	0.985700	0.524200	0.403850	0.762600	NaN	NaN	NaN	0.564241	0.601170	1.713963	0.609801	0.548374	1.139996	NaN	NaN	NaN	0.587021	0.574772	0.024692	0.029218	0.040820	0.098243	1.000000	0.089768	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	UPF0539 protein C7orf59 OS=Homo sapiens GN=C7orf59 PE=4 SV=1	sp|Q0VGL1|LTOR4_HUMAN	LTOR4_HUMAN	Ragulator complex protein LAMTOR4 OS=Homo sapiens GN=LAMTOR4 PE=1 SV=1	97.100000	0.002880	0.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.22558.22558.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=22558"	TSALTQGLER	T[+42]SALTQGLER	M	I	99.700000	62.800000	52.200000	32.300000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1126.590000	2.000000	0.000810	0.720000	0.000000	0.000000	1.932767	2.099767	1.484300	0.749800	0.358950	0.477450	3.171100	0.963314	1.378514	2.429014	3.046378	2.580942	0.872241	0.487406	0.713730	2.120924	0.410266	0.660588	1.807393	1.314683	0.062878	0.268351	0.368560	0.901431	0.204841	0.006118	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	UPF0539 protein C7orf59 OS=Homo sapiens GN=C7orf59 PE=4 SV=1	C9JXA7_HUMAN	C9JXA7_HUMAN	UPF0539 protein C7orf59 OS=Homo sapiens GN=C7orf59 PE=4 SV=1	98.000000	0.008960	14272.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.19847.19847.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19847"	TSALTQGLER	T[+42]SALTQGLER	M	I	98.700000	54.400000	52.100000	24.400000	Acetyl (+42)	1116.580000	2.000000	0.001500	1.300000	2.000000	11.000000	1.932767	2.099767	1.484300	0.749800	0.358950	0.477450	3.171100	0.963314	1.378514	2.429014	3.046378	2.580942	0.872241	0.487406	0.713730	2.120924	0.410266	0.660588	1.807393	1.314683	0.062878	0.268351	0.367938	1.000000	0.179236	0.006116	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	UPF0539 protein C7orf59 OS=Homo sapiens GN=C7orf59 PE=4 SV=1	C9JXA7_HUMAN	C9JXA7_HUMAN	UPF0539 protein C7orf59 OS=Homo sapiens GN=C7orf59 PE=4 SV=1	98.000000	0.008960	14272.900000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.19885.19885.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19885"	TSALTQGLER	T[+42]SALTQGLER	M	I	99.500000	57.300000	52.700000	27.100000	Acetyl (+42), Label:13C(6) (+6)	1122.600000	2.000000	-0.001400	-1.200000	2.000000	11.000000	1.932767	2.099767	1.484300	0.749800	0.358950	0.477450	3.171100	0.963314	1.378514	2.429014	3.046378	2.580942	0.872241	0.487406	0.713730	2.120924	0.410266	0.660588	1.807393	1.314683	0.062878	0.268351	0.306013	0.725216	0.177222	0.006113	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Protein C17orf49 OS=Homo sapiens GN=C17orf49 PE=4 SV=1	sp|Q8IXM2|BAP18_HUMAN	BAP18_HUMAN	Chromatin complexes subunit BAP18 OS=Homo sapiens GN=BAP18 PE=1 SV=1	98.900000	0.002500	17882.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.44831.44831.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44831"	TSASTKVGEIFSAAGAAF	T[+42]SASTKVGEIFSAAGAAF	M	T	99.700000	71.800000	55.400000	59.100000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36)	1791.910000	2.000000	-0.008000	-4.500000	2.000000	19.000000	10.062900	44.363600	4.408600	NaN	NaN	0.395100	NaN	NaN	NaN	12.646600	64.363478	7.665797	NaN	NaN	0.590627	NaN	NaN	NaN	12.646600	64.363478	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Structural maintenance of chromosomes protein 2 OS=Homo sapiens GN=SMC2	sp|O95347|SMC2_HUMAN	SMC2_HUMAN	Structural maintenance of chromosomes protein 2 OS=Homo sapiens GN=SMC2 PE=1 SV=2	99.800000	0.004480	135642.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.24559.24559.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24559"	TSATTALELVAGER	T[+28]SATTALELVAGER	D	L	99.700000	96.600000	55.000000	72.100000	Dimethyl (+28)	1445.770000	2.000000	-0.002000	-1.400000	535.000000	548.000000	5.478367	0.821500	0.828667	1.499550	0.790200	0.508900	NaN	NaN	NaN	6.884965	1.191846	1.440909	1.744423	1.072985	0.760744	NaN	NaN	NaN	4.314694	1.132416	0.342026	0.033380	0.791748	0.274475	1.000000	0.089525	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Sialic acid synthase OS=Homo sapiens GN=NANS PE=1 SV=2	SIAS_HUMAN	SIAS_HUMAN	Sialic acid synthase OS=Homo sapiens GN=NANS PE=1 SV=2	100.000000	0.003950	40289.900000	2.000000	3.000000	3.000000	Spectrum52845 scans:24830,	TSAYPLQPEDVNLR	T[+28]SAYPLQPEDVNLR	C	V	99.500000	65.000000	51.400000	48.700000	Dimethyl (+28), Label:13C(6) (+6)	1635.850000	2.000000	-0.002500	-1.500000	185.000000	198.000000	NaN	1.293967	NaN	0.033250	0.097750	3.364750	NaN	NaN	NaN	NaN	1.877309	NaN	0.038680	0.132731	5.029898	NaN	NaN	NaN	0.038680	1.005020	NaN	0.455064	NaN	1.000000	1.000000	0.089456	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Sialic acid synthase OS=Homo sapiens GN=NANS PE=1 SV=2	SIAS_HUMAN	SIAS_HUMAN	Sialic acid synthase OS=Homo sapiens GN=NANS PE=1 SV=2	100.000000	0.003950	40289.900000	2.000000	3.000000	3.000000	Spectrum52860 scans:24846,	TSAYPLQPEDVNLR	T[+28]SAYPLQPEDVNLR	C	V	99.700000	98.000000	50.800000	81.800000	Dimethyl (+28)	1629.830000	2.000000	-0.005800	-3.600000	185.000000	198.000000	NaN	1.293967	NaN	0.033250	0.097750	3.364750	NaN	NaN	NaN	NaN	1.877309	NaN	0.038680	0.132731	5.029898	NaN	NaN	NaN	0.038680	1.005020	NaN	0.455064	NaN	1.000000	1.000000	0.089421	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC	sp|Q00610|CLH1_HUMAN	CLH1_HUMAN	Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5	100.000000	0.011900	191600.900000	7.000000	9.000000	9.000000	Spectrum12156 scans:43890,	TSIDAYDNFDNISLAQR	T[+28]SIDAYDNFDNISLAQR	R	L	99.700000	70.900000	49.200000	59.900000	Dimethyl (+28)	1969.940000	2.000000	-0.001800	-0.900000	1482.000000	1498.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC	sp|Q00610|CLH1_HUMAN	CLH1_HUMAN	Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5	100.000000	0.011900	191600.900000	7.000000	9.000000	9.000000	Spectrum12160 scans:43915,	TSIDAYDNFDNISLAQR	T[+28]SIDAYDNFDNISLAQR	R	L	99.700000	132.000000	49.300000	122.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1979.940000	2.000000	-0.003100	-1.600000	1482.000000	1498.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	sp|Q86U42-2|PABP2_HUMAN	PABP2_HUMAN	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	100.000000	0.023700	31479.000000	2.000000	6.000000	18.000000	Spectrum12389 scans:45301,	TSLALDESLFR	T[+28]SLALDESLFR	R	G	99.000000	54.800000	50.100000	24.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1288.690000	2.000000	-0.001800	-1.400000	228.000000	238.000000	0.690567	1.351067	1.932600	1.495950	0.132100	0.081950	NaN	NaN	NaN	0.867873	1.960151	3.360459	1.740236	0.179374	0.122505	NaN	NaN	NaN	1.304054	1.069762	0.205490	0.441905	1.000000	0.705664	1.000000	0.089318	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	sp|Q86U42-2|PABP2_HUMAN	PABP2_HUMAN	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	100.000000	0.023700	31479.000000	2.000000	6.000000	18.000000	Spectrum12386 scans:45293,	TSLALDESLFR	T[+28]SLALDESLFR	R	G	99.000000	53.200000	49.900000	38.300000	Dimethyl (+28)	1278.680000	2.000000	-0.000700	-0.550000	228.000000	238.000000	0.690567	1.351067	1.932600	1.495950	0.132100	0.081950	NaN	NaN	NaN	0.867873	1.960151	3.360459	1.740236	0.179374	0.122505	NaN	NaN	NaN	1.304054	1.069762	0.205490	0.441905	1.000000	0.705340	1.000000	0.089283	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	sp|Q86U42-2|PABP2_HUMAN	PABP2_HUMAN	Isoform 2 of Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1	100.000000	0.023700	31479.000000	2.000000	6.000000	18.000000	Spectrum12390 scans:45317,	TSLALDESLFR	T[+28]SLALDESLFR	R	G	99.600000	62.400000	50.200000	33.600000	Dimethyl (+28), Label:13C(6) (+6)	1284.700000	2.000000	-0.001300	-1.000000	228.000000	238.000000	0.690567	1.351067	1.932600	1.495950	0.132100	0.081950	NaN	NaN	NaN	0.867873	1.960151	3.360459	1.740236	0.179374	0.122505	NaN	NaN	NaN	1.304054	1.069762	0.205490	0.441905	0.385224	0.704044	1.000000	0.089249	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Leucine-rich repeat flightless-interacting protein 1 OS=Homo sapiens GN=LRRFIP1	sp|Q32MZ4|LRRF1_HUMAN	LRRF1_HUMAN	Leucine-rich repeat flightless-interacting protein 1 OS=Homo sapiens GN=LRRFIP1 PE=1 SV=2	98.900000	0.002500	89234.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.3791.3791.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3791"	TSPAAAQSR	T[+42]SPAAAQSR	M	E	99.700000	54.700000	49.200000	40.400000	Acetyl (+42)	929.460000	2.000000	-0.000340	-0.370000	2.000000	10.000000	1.530867	0.993267	1.711400	0.736450	0.401850	0.551000	0.541871	0.589571	1.595229	1.923924	1.441048	2.975830	0.856711	0.545658	0.823679	0.362419	0.251093	0.764438	1.047685	0.745933	0.150847	0.172446	0.163065	0.252912	0.115129	0.006083	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Leucine-rich repeat flightless-interacting protein 1 OS=Homo sapiens GN=LRRFIP1	sp|Q32MZ4|LRRF1_HUMAN	LRRF1_HUMAN	Leucine-rich repeat flightless-interacting protein 1 OS=Homo sapiens GN=LRRFIP1 PE=1 SV=2	95.300000	0.004480	89234.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.3858.3858.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3858"	TSPAAAQSR	T[+42]SPAAAQSR	M	E	98.800000	50.800000	49.400000	34.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	939.470000	2.000000	0.000540	0.580000	2.000000	10.000000	1.530867	0.993267	1.711400	0.736450	0.401850	0.551000	0.541871	0.589571	1.595229	1.923924	1.441048	2.975830	0.856711	0.545658	0.823679	0.362419	0.251093	0.764438	1.047685	0.745933	0.150847	0.172446	0.163014	0.252805	0.113473	0.006080	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2	HDAC6_HUMAN	HDAC6_HUMAN	Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2	99.800000	0.005010	131400.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.2952.2952.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=2952"	TSTGQDSTTTR	T[+42]STGQDSTTTR	M	Q	99.700000	92.800000	47.100000	76.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1205.550000	2.000000	0.005300	4.400000	2.000000	12.000000	0.433900	14.639667	NaN	0.477900	3.458600	15.438250	NaN	NaN	NaN	0.545306	21.239482	NaN	0.555940	4.696313	23.078332	NaN	NaN	NaN	0.550623	12.967897	0.006147	0.220486	0.380911	0.225890	1.000000	0.089146	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2	HDAC6_HUMAN	HDAC6_HUMAN	Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2	97.700000	0.002330	131400.700000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.8226.8226.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=8226"	TSTGQDSTTTR	T[+42]STGQDSTTTR	M	Q	99.700000	97.900000	46.100000	80.300000	Acetyl (+42)	1195.530000	2.000000	-0.000400	-0.340000	2.000000	12.000000	0.433900	14.639667	NaN	0.477900	3.458600	15.438250	NaN	NaN	NaN	0.545306	21.239482	NaN	0.555940	4.696313	23.078332	NaN	NaN	NaN	0.550623	12.967897	0.006147	0.220486	0.374228	0.732843	1.000000	0.089043	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ornithine aminotransferase, mitochondrial OS=Homo sapiens GN=OAT PE=1 SV=1	sp|P04181|OAT_HUMAN	OAT_HUMAN	Ornithine aminotransferase, mitochondrial OS=Homo sapiens GN=OAT PE=1 SV=1	100.000000	0.002630	48518.200000	2.000000	2.000000	2.000000	Spectrum46073 scans:17025,	TSVATKKTVQGPPTSDDIFER	T[+28]SVATKKTVQGPPTSDDIFER	A	E	99.500000	34.700000	55.000000	23.600000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2374.330000	4.000000	0.000120	0.051000	26.000000	46.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Ubiquitin-associated protein 2 OS=Homo sapiens GN=UBAP2 PE=1 SV=1	UBAP2_HUMAN	UBAP2_HUMAN	Ubiquitin-associated protein 2 OS=Homo sapiens GN=UBAP2 PE=1 SV=1	98.500000	0.004480	117097.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.3046.3046.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3046"	TSVSSDHCR	T[+42]SVSSDHC[+57]R	M	G	99.600000	49.900000	41.700000	40.500000	Acetyl (+42), Carbamidomethyl (+57)	1089.450000	2.000000	-0.000150	-0.140000	3.000000	11.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.123000	57471.900000	10.000000	25.000000	49.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.41298.41298.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41298"	TSVTVLAAELLR	T[+28]SVTVLAAELLR	T	E	99.700000	87.200000	54.300000	52.000000	Dimethyl (+28)	1299.780000	2.000000	0.000058	0.045000	100.000000	111.000000	0.753100	0.154800	0.205600	0.677050	0.397450	0.630500	NaN	NaN	NaN	0.946462	0.224587	0.357503	0.787611	0.539684	0.942522	NaN	NaN	NaN	0.867037	0.382135	0.058156	0.248951	1.000000	0.422633	1.000000	0.088906	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.112000	57471.900000	9.000000	17.000000	25.000000	Nsco_Tails_biological_replicate2_apoptosis.35036.35036.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35036"	TSVTVLAAELLR	T[+28]SVTVLAAELLR	T	E	99.700000	73.200000	54.300000	40.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1309.780000	2.000000	-0.000940	-0.720000	100.000000	111.000000	0.753100	0.154800	0.205600	0.677050	0.397450	0.630500	NaN	NaN	NaN	0.946462	0.224587	0.357503	0.787611	0.539684	0.942522	NaN	NaN	NaN	0.867037	0.382135	0.058156	0.248951	1.000000	0.421807	1.000000	0.088872	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Ferritin heavy chain OS=Homo sapiens GN=FTH1 PE=4 SV=1	E9PK45_HUMAN	E9PK45_HUMAN	Ferritin heavy chain OS=Homo sapiens GN=FTH1 PE=4 SV=1	98.900000	0.002500	11585.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.4672.4672.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4672"	TTASTSQVR	T[+42]TASTSQVR	M	Q	99.700000	60.600000	49.900000	44.700000	Acetyl (+42)	991.490000	2.000000	-0.000057	-0.057000	2.000000	10.000000	0.855033	5.626467	5.056167	1.003600	1.015350	1.002300	1.380629	9.806486	7.999814	1.074567	8.162975	8.791804	1.167486	1.378709	1.498318	0.923405	4.176489	3.833532	1.055153	4.572724	0.004513	0.145835	0.009862	1.000000	0.105152	0.006057	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Ferritin heavy chain OS=Homo sapiens GN=FTH1 PE=4 SV=1	E9PK45_HUMAN	E9PK45_HUMAN	Ferritin heavy chain OS=Homo sapiens GN=FTH1 PE=4 SV=1	91.800000	0.002330	11585.200000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.11735.11735.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11735"	TTASTSQVR	T[+42]TASTSQVR	M	Q	99.000000	52.000000	50.300000	39.200000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1001.500000	2.000000	-0.000770	-0.760000	2.000000	10.000000	0.855033	5.626467	5.056167	1.003600	1.015350	1.002300	1.380629	9.806486	7.999814	1.074567	8.162975	8.791804	1.167486	1.378709	1.498318	0.923405	4.176489	3.833532	1.055153	4.572724	0.004513	0.145835	0.004580	1.000000	0.103768	0.006055	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORDC1 PE=1 SV=2	sp|Q9UHD1|CHRD1_HUMAN	CHRD1_HUMAN	Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORDC1 PE=1 SV=2	100.000000	0.003950	37471.700000	2.000000	2.000000	3.000000	Spectrum66025 scans:40318,	TTDFSDFLSIVGCTKGR	T[+28]TDFSDFLSIVGC[+57]TKGR	R	H	99.700000	58.300000	52.000000	52.000000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1977.000000	3.000000	-0.002100	-1.100000	47.000000	63.000000	NaN	NaN	NaN	0.138550	1.223550	9.064900	NaN	NaN	NaN	NaN	NaN	NaN	0.161175	1.661416	13.550938	NaN	NaN	NaN	0.161175	1.661416	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	sp|P53396|ACLY_HUMAN	ACLY_HUMAN	ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3	100.000000	0.001320	120824.800000	1.000000	1.000000	1.000000	Spectrum8136 scans:30549,	TTDGVYEGVAIGGDR	T[+28]TDGVYEGVAIGGDR	R	Y	98.500000	47.800000	48.200000	25.700000	Dimethyl (+28)	1536.740000	2.000000	-0.000720	-0.470000	677.000000	691.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.011500	67803.800000	4.000000	4.000000	4.000000	Nsco_Tails_biological_replicate1_apoptosis.1772.1772.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=1772"	TTEAEKNER	T[+28]TEAEKNER	R	V	99.600000	59.300000	51.500000	38.300000	Dimethyl (+28), Dimethyl (+28)	1132.570000	2.000000	-0.000087	-0.077000	509.000000	517.000000	788.113667	385.334000	0.550400	NaN	NaN	NaN	NaN	NaN	NaN	990.465837	559.049231	0.957051	NaN	NaN	NaN	NaN	NaN	NaN	990.465837	559.049231	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum32837 scans:1747,	TTEAEKNER	T[+28]TEAEKNER	R	V	99.300000	34.300000	49.200000	8.990000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1142.620000	3.000000	-0.000610	-0.540000	509.000000	517.000000	788.113667	385.334000	0.550400	NaN	NaN	NaN	NaN	NaN	NaN	990.465837	559.049231	0.957051	NaN	NaN	NaN	NaN	NaN	NaN	990.465837	559.049231	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=4 SV=1	THIOM_HUMAN	THIOM_HUMAN	Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2	99.200000	0.002880	18365.200000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.24677.24677.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24677"	TTFNIQDGPDFQDR	T[+28]TFNIQDGPDFQDR	L	V	99.700000	58.900000	50.300000	56.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1690.780000	2.000000	-0.003000	-1.800000	60.000000	73.000000	0.409100	0.298867	0.728900	0.454100	0.760700	585.076250	NaN	22.586957	NaN	0.514138	0.433601	1.267432	0.528254	1.032928	874.618806	NaN	9.619570	NaN	0.521196	3.695366	0.008620	0.339098	0.015801	0.345571	1.000000	0.006043	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=4 SV=1	F8WDN2_HUMAN	F8WDN2_HUMAN	Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=4 SV=1	98.000000	0.002360	16076.500000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.47476.47476.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=47476"	TTFNIQDGPDFQDR	T[+28]TFNIQDGPDFQDR	L	V	99.700000	73.100000	50.800000	72.200000	Dimethyl (+28), Label:13C(6) (+6)	1686.790000	2.000000	-0.009400	-5.500000	60.000000	73.000000	0.409100	0.298867	0.728900	0.454100	0.760700	585.076250	NaN	22.586957	NaN	0.514138	0.433601	1.267432	0.528254	1.032928	874.618806	NaN	9.619570	NaN	0.521196	3.695366	0.008620	0.339098	0.015793	0.345469	1.000000	0.006041	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1	PSB10_HUMAN	PSB10_HUMAN	Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1	100.000000	0.005010	28918.000000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.44926.44926.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44926"	TTIAGLVFQDGVILGADTR	T[+28]TIAGLVFQDGVILGADTR	G	A	98.600000	70.900000	58.500000	59.900000	Dimethyl (+28), Label:13C(6) (+6)	1980.100000	3.000000	0.004600	2.300000	40.000000	58.000000	0.540000	0.293400	0.543400	0.715400	0.354050	0.496350	NaN	NaN	NaN	0.678648	0.425670	0.944879	0.832223	0.480752	0.741984	NaN	NaN	NaN	0.755436	0.453211	0.064489	0.038639	0.103361	0.068407	1.000000	0.088566	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1	PSB10_HUMAN	PSB10_HUMAN	Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1	99.900000	0.004480	28918.000000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.37717.37717.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37717"	TTIAGLVFQDGVILGADTR	T[+28]TIAGLVFQDGVILGADTR	G	A	99.700000	96.800000	58.400000	86.700000	Dimethyl (+28)	1974.080000	2.000000	0.005100	2.600000	40.000000	58.000000	0.540000	0.293400	0.543400	0.715400	0.354050	0.496350	NaN	NaN	NaN	0.678648	0.425670	0.944879	0.832223	0.480752	0.741984	NaN	NaN	NaN	0.755436	0.453211	0.064489	0.038639	0.103266	0.057250	1.000000	0.088532	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit beta type (Fragment) OS=Homo sapiens GN=PSMB7 PE=2 SV=1	Q5TBG5_HUMAN	Q5TBG5_HUMAN	Proteasome subunit beta type (Fragment) OS=Homo sapiens GN=PSMB7 PE=2 SV=1	100.000000	0.005010	22761.200000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.29668.29668.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29668"	TTIAGVVYKDGIVLGADTR	T[+28]TIAGVVYKDGIVLGADTR	G	A	99.700000	101.000000	58.600000	86.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2022.150000	2.000000	-0.002900	-1.400000	44.000000	62.000000	147.990500	58.940800	0.370033	608.460000	349.910700	0.574950	NaN	NaN	NaN	185.987809	85.512332	0.643424	707.820270	475.131645	0.859481	NaN	NaN	NaN	446.904040	280.321989	0.000000	0.000000	0.000000	0.000000	1.000000	0.088498	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Proteasome subunit beta type (Fragment) OS=Homo sapiens GN=PSMB7 PE=2 SV=1	Q5TBG5_HUMAN	Q5TBG5_HUMAN	Proteasome subunit beta type (Fragment) OS=Homo sapiens GN=PSMB7 PE=2 SV=1	100.000000	0.017900	22761.200000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.25714.25714.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25714"	TTIAGVVYKDGIVLGADTR	T[+28]TIAGVVYKDGIVLGADTR	G	A	99.700000	90.800000	58.600000	85.800000	Dimethyl (+28), Dimethyl (+28)	2004.120000	2.000000	-0.002000	-0.990000	44.000000	62.000000	147.990500	58.940800	0.370033	608.460000	349.910700	0.574950	NaN	NaN	NaN	185.987809	85.512332	0.643424	707.820270	475.131645	0.859481	NaN	NaN	NaN	446.904040	280.321989	0.000000	0.000000	0.000000	0.000000	0.925333	0.088464	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Proteasome subunit beta type (Fragment) OS=Homo sapiens GN=PSMB7 PE=2 SV=1	Q5TBG5_HUMAN	Q5TBG5_HUMAN	Proteasome subunit beta type (Fragment) OS=Homo sapiens GN=PSMB7 PE=2 SV=1	100.000000	0.017900	22761.200000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.25718.25718.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25718"	TTIAGVVYKDGIVLGADTR	T[+28]TIAGVVYKDGIVLGADTR	G	A	99.700000	92.300000	58.300000	82.400000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2014.170000	2.000000	-0.003100	-1.600000	44.000000	62.000000	147.990500	58.940800	0.370033	608.460000	349.910700	0.574950	NaN	NaN	NaN	185.987809	85.512332	0.643424	707.820270	475.131645	0.859481	NaN	NaN	NaN	446.904040	280.321989	0.000000	0.000000	0.000000	0.000000	0.921647	0.088430	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	sp|P25789|PSA4_HUMAN	PSA4_HUMAN	Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1	100.000000	0.003950	29466.800000	2.000000	2.000000	3.000000	Spectrum19682 scans:13450,	TTIFSPEGR	T[+28]TIFSPEGR	R	L	99.000000	51.900000	48.200000	26.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1044.550000	2.000000	-0.000091	-0.087000	9.000000	17.000000	0.582400	0.311500	0.535933	0.642750	0.480200	0.717350	3.396757	7.036100	8.866500	0.731934	0.451930	0.931896	0.747710	0.652047	1.072352	2.271850	2.996608	4.248850	1.250498	1.366862	0.134052	0.236262	0.232000	0.342023	0.062590	0.006027	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	PSB6_HUMAN	PSB6_HUMAN	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	100.000000	0.017900	25339.900000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.25929.25929.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25929"	TTIMAVQFDGGVVLGADSR	T[+28]TIM[+16]AVQFDGGVVLGADSR	G	T	99.700000	73.800000	57.200000	64.600000	Dimethyl (+28), Oxidation (+16), Label:13C(6) (+6)	1986.030000	2.000000	0.006400	3.200000	35.000000	53.000000	NaN	0.297467	NaN	0.625500	0.410700	0.668950	NaN	NaN	NaN	NaN	0.431570	NaN	0.727643	0.557675	1.000000	NaN	NaN	NaN	0.727643	0.494623	NaN	0.080719	NaN	0.309839	1.000000	0.088363	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	PSB6_HUMAN	PSB6_HUMAN	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	100.000000	0.017900	25339.900000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.25894.25894.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25894"	TTIMAVQFDGGVVLGADSR	T[+28]TIM[+16]AVQFDGGVVLGADSR	G	T	99.700000	85.000000	56.400000	77.900000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1990.010000	2.000000	-0.001700	-0.860000	35.000000	53.000000	NaN	0.297467	NaN	0.625500	0.410700	0.668950	NaN	NaN	NaN	NaN	0.431570	NaN	0.727643	0.557675	1.000000	NaN	NaN	NaN	0.727643	0.494623	NaN	0.080719	NaN	0.309496	1.000000	0.088329	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Importin subunit alpha-1 (Fragment) OS=Homo sapiens GN=KPNA1 PE=4 SV=1	C9J4U1_HUMAN	C9J4U1_HUMAN	Importin subunit alpha-1 (Fragment) OS=Homo sapiens GN=KPNA1 PE=4 SV=1	94.800000	0.002500	24399.100000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.7448.7448.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7448"	TTPGKENFR	T[+42]TPGKENFR	M	L	98.700000	47.300000	51.600000	32.400000	Acetyl (+42), Dimethyl (+28)	1118.570000	2.000000	-0.000130	-0.120000	2.000000	10.000000	4.062533	1.395167	1.009800	15.857500	2.613900	0.165700	NaN	NaN	NaN	5.105609	2.024132	1.755869	18.446997	3.549324	0.247702	NaN	NaN	NaN	11.776303	2.786728	0.199477	0.170050	0.354603	0.651294	0.863184	0.088295	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	PDZ and LIM domain protein 1 OS=Homo sapiens GN=PDLIM1 PE=1 SV=4	PDLI1_HUMAN	PDLI1_HUMAN	PDZ and LIM domain protein 1 OS=Homo sapiens GN=PDLIM1 PE=1 SV=4	100.000000	0.013200	36053.300000	1.000000	4.000000	10.000000	Spectrum65289 scans:39500,	TTQQIDLQGPGPWGFR	T[+42]TQQIDLQGPGPWGFR	M	L	99.700000	79.300000	51.200000	64.000000	Acetyl (+42), Label:13C(6) (+6)	1847.930000	2.000000	-0.000320	-0.170000	2.000000	17.000000	0.471233	3.285033	22.492933	0.814350	0.526750	0.647100	NaN	NaN	NaN	0.592225	4.765983	39.111343	0.947332	0.715256	0.967337	NaN	NaN	NaN	0.769778	2.740619	0.144316	0.405167	0.156590	1.000000	0.820331	0.088261	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	PDZ and LIM domain protein 1 OS=Homo sapiens GN=PDLIM1 PE=1 SV=4	PDLI1_HUMAN	PDLI1_HUMAN	PDZ and LIM domain protein 1 OS=Homo sapiens GN=PDLIM1 PE=1 SV=4	100.000000	0.007510	36053.300000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37427.37427.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37427"	TTQQIDLQGPGPWGFR	T[+42]TQQIDLQGPGPWGFR	M	L	99.600000	59.200000	54.800000	50.400000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1851.920000	2.000000	0.001800	0.940000	2.000000	17.000000	0.471233	3.285033	22.492933	0.814350	0.526750	0.647100	NaN	NaN	NaN	0.592225	4.765983	39.111343	0.947332	0.715256	0.967337	NaN	NaN	NaN	0.769778	2.740619	0.144316	0.405167	0.156541	1.000000	0.817432	0.088228	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	PDZ and LIM domain protein 1 OS=Homo sapiens GN=PDLIM1 PE=1 SV=4	PDLI1_HUMAN	PDLI1_HUMAN	PDZ and LIM domain protein 1 OS=Homo sapiens GN=PDLIM1 PE=1 SV=4	100.000000	0.007510	36053.300000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37552.37552.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37552"	TTQQIDLQGPGPWGFR	T[+42]TQQIDLQGPGPWGFR	M	L	99.700000	81.000000	54.400000	69.600000	Acetyl (+42)	1841.910000	2.000000	-0.001100	-0.580000	2.000000	17.000000	0.471233	3.285033	22.492933	0.814350	0.526750	0.647100	NaN	NaN	NaN	0.592225	4.765983	39.111343	0.947332	0.715256	0.967337	NaN	NaN	NaN	0.769778	2.740619	0.144316	0.405167	1.000000	0.938538	0.814554	0.088194	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2	ADRM1_HUMAN	ADRM1_HUMAN	Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2	98.800000	0.005270	42136.200000	1.000000	3.000000	4.000000	Spectrum65034 scans:39213,	TTSGALFPSLVPGSR	T[+42]TSGALFPSLVPGSR	M	G	99.600000	65.400000	51.500000	46.800000	Acetyl (+42), Label:13C(6) (+6)	1536.820000	2.000000	0.000220	0.140000	2.000000	16.000000	15.482733	8.482600	0.464867	0.647900	0.293100	0.452350	0.806586	0.353629	0.665929	19.458003	12.306703	0.808323	0.753701	0.397990	0.676209	0.539468	0.150607	0.319115	6.917057	4.285100	0.350771	0.391527	1.000000	0.906337	0.053832	0.006011	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2	ADRM1_HUMAN	ADRM1_HUMAN	Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2	98.800000	0.005270	42136.200000	1.000000	3.000000	4.000000	Spectrum21191 scans:26343,	TTSGALFPSLVPGSR	T[+42]TSGALFPSLVPGSR	M	G	99.700000	80.400000	51.300000	58.300000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1540.810000	2.000000	-0.000500	-0.320000	2.000000	16.000000	15.482733	8.482600	0.464867	0.647900	0.293100	0.452350	0.806586	0.353629	0.665929	19.458003	12.306703	0.808323	0.753701	0.397990	0.676209	0.539468	0.150607	0.319115	6.917057	4.285100	0.350771	0.391527	1.000000	0.905733	0.053649	0.006009	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2	ADRM1_HUMAN	ADRM1_HUMAN	Proteasomal ubiquitin receptor ADRM1 OS=Homo sapiens GN=ADRM1 PE=1 SV=2	100.000000	0.017500	42136.200000	1.000000	2.000000	7.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.37538.37538.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37538"	TTSGALFPSLVPGSR	T[+42]TSGALFPSLVPGSR	M	G	99.700000	78.200000	55.200000	67.600000	Acetyl (+42)	1530.800000	2.000000	-0.000670	-0.440000	2.000000	16.000000	15.482733	8.482600	0.464867	0.647900	0.293100	0.452350	0.806586	0.353629	0.665929	19.458003	12.306703	0.808323	0.753701	0.397990	0.676209	0.539468	0.150607	0.319115	6.917057	4.285100	0.350771	0.391527	1.000000	0.406888	0.053467	0.006006	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.123000	57471.900000	10.000000	25.000000	49.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40674.40674.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40674"	TTSVTVLAAELLR	T[+28]TSVTVLAAELLR	G	E	99.700000	73.500000	55.000000	48.000000	Dimethyl (+28)	1400.820000	2.000000	-0.000008	-0.005400	99.000000	111.000000	0.560500	0.320200	0.571300	0.775100	0.460150	0.594550	NaN	NaN	NaN	0.704411	0.464552	0.993392	0.901672	0.624822	0.888781	NaN	NaN	NaN	0.803042	0.544687	0.077801	0.092993	1.000000	0.426834	0.755991	0.088060	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.112000	57471.900000	9.000000	17.000000	25.000000	Nsco_Tails_biological_replicate2_apoptosis.34486.34486.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34486"	TTSVTVLAAELLR	T[+28]TSVTVLAAELLR	G	E	99.700000	114.000000	55.100000	79.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1410.830000	2.000000	-0.000340	-0.240000	99.000000	111.000000	0.560500	0.320200	0.571300	0.775100	0.460150	0.594550	NaN	NaN	NaN	0.704411	0.464552	0.993392	0.901672	0.624822	0.888781	NaN	NaN	NaN	0.803042	0.544687	0.077801	0.092993	0.402938	0.426270	0.753529	0.087993	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	PSB6_HUMAN	PSB6_HUMAN	Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4	100.000000	0.011900	25339.900000	5.000000	8.000000	9.000000	Spectrum16586 scans:6644,	TTTGSYIANR	T[+28]TTGSYIANR	R	V	99.000000	52.500000	48.800000	34.000000	Dimethyl (+28), Label:13C(6) (+6)	1116.590000	2.000000	-0.000091	-0.081000	54.000000	63.000000	11.005700	3.529767	0.463567	3.595850	3.981700	0.796000	NaN	NaN	NaN	13.831469	5.121047	0.806063	4.183045	5.406613	1.189925	NaN	NaN	NaN	9.007257	5.263830	0.247780	0.017264	1.000000	0.041573	0.751082	0.087926	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	sp|P28074|PSB5_HUMAN	PSB5_HUMAN	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	100.000000	0.012500	28463.000000	3.000000	5.000000	5.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.19865.19865.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=19865"	TTTLAFKFR	T[+28]TTLAFKFR	G	H	98.700000	59.800000	52.500000	37.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1149.720000	3.000000	-0.000370	-0.320000	60.000000	68.000000	109.940667	63.135967	1.568467	125.209100	80.740850	0.641550	NaN	NaN	NaN	138.168489	91.598752	2.727294	145.655489	109.635209	0.959040	NaN	NaN	NaN	141.911989	100.616981	0.000000	0.000000	0.000000	0.000000	0.748652	0.087893	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 2 of Hematological and neurological expressed 1 protein OS=Homo sapiens GN=HN1	sp|Q9UK76-2|HN1_HUMAN	HN1_HUMAN	Isoform 2 of Hematological and neurological expressed 1 protein OS=Homo sapiens GN=HN1	100.000000	0.004720	19898.400000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.30709.30709.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30709"	TTTTTFKGVDPNSR	T[+42]TTTTFKGVDPNSR	M	N	98.800000	59.700000	54.900000	52.800000	Acetyl (+42), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1611.830000	2.000000	0.002900	1.800000	2.000000	15.000000	805.221967	271.847333	0.313167	1.636550	NaN	NaN	NaN	NaN	NaN	1011.966780	394.400812	0.544543	1.903795	NaN	NaN	NaN	NaN	NaN	506.935288	394.400812	0.380234	NaN	0.411801	NaN	0.746237	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Isoform 2 of Hematological and neurological expressed 1 protein OS=Homo sapiens GN=HN1	sp|Q9UK76-2|HN1_HUMAN	HN1_HUMAN	Isoform 2 of Hematological and neurological expressed 1 protein OS=Homo sapiens GN=HN1	100.000000	0.004720	19898.400000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.30741.30741.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30741"	TTTTTFKGVDPNSR	T[+42]TTTTFKGVDPNSR	M	N	99.300000	58.400000	53.800000	52.000000	Acetyl (+42), Dimethyl (+28)	1593.800000	2.000000	-0.003500	-2.200000	2.000000	15.000000	805.221967	271.847333	0.313167	1.636550	NaN	NaN	NaN	NaN	NaN	1011.966780	394.400812	0.544543	1.903795	NaN	NaN	NaN	NaN	NaN	506.935288	394.400812	0.380234	NaN	0.411673	NaN	0.743837	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Protein transport protein Sec23A (Fragment) OS=Homo sapiens GN=SEC23A PE=4 SV=1	G3V5K1_HUMAN	G3V5K1_HUMAN	Protein transport protein Sec23A (Fragment) OS=Homo sapiens GN=SEC23A PE=4 SV=1	98.900000	0.007510	4697.100000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40062.40062.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40062"	TTYLEFIQQNEER	T[+42]TYLEFIQQNEER	M	D	99.700000	82.200000	51.800000	73.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1721.810000	2.000000	-0.000370	-0.220000	2.000000	14.000000	0.582500	0.232600	0.399200	0.928200	0.375800	0.403900	NaN	NaN	NaN	0.732060	0.337460	0.694140	1.079773	0.510286	0.603782	NaN	NaN	NaN	0.905916	0.423873	0.120708	0.128030	0.145841	0.129561	0.657197	0.087759	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Protein transport protein Sec23A (Fragment) OS=Homo sapiens GN=SEC23A PE=4 SV=1	G3V5K1_HUMAN	G3V5K1_HUMAN	Protein transport protein Sec23A (Fragment) OS=Homo sapiens GN=SEC23A PE=4 SV=1	98.900000	0.007510	4697.100000	1.000000	2.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.40061.40061.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40061"	TTYLEFIQQNEER	T[+42]TYLEFIQQNEER	M	D	99.700000	101.000000	51.400000	91.700000	Acetyl (+42)	1711.800000	2.000000	-0.001400	-0.820000	2.000000	14.000000	0.582500	0.232600	0.399200	0.928200	0.375800	0.403900	NaN	NaN	NaN	0.732060	0.337460	0.694140	1.079773	0.510286	0.603782	NaN	NaN	NaN	0.905916	0.423873	0.120708	0.128030	0.145790	1.000000	0.655335	0.087693	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Cullin-associated NEDD8-dissociated protein 1 OS=Homo sapiens GN=CAND1	sp|Q86VP6-2|CAND1_HUMAN	CAND1_HUMAN	Isoform 2 of Cullin-associated NEDD8-dissociated protein 1 OS=Homo sapiens GN=CAND1	100.000000	0.002630	117875.900000	2.000000	2.000000	2.000000	Spectrum29029 scans:12461,	TVDDGLDIR	T[+28]VDDGLDIR	H	K	98.900000	49.500000	47.500000	28.300000	Dimethyl (+28)	1030.530000	2.000000	-0.000740	-0.720000	906.000000	914.000000	1.816867	10.578033	33.708900	1.601800	0.542000	2.406150	0.470086	3.635671	43.592557	2.283356	15.346794	58.613980	1.863371	0.735963	3.596906	0.314407	1.548398	20.889667	1.487045	5.877052	0.130998	0.300961	0.158164	1.000000	0.044430	0.005977	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.021100	92453.700000	5.000000	9.000000	16.000000	Spectrum21596 scans:4222,	TVEEDLGKSR	T[+28]VEEDLGKSR	G	E	99.400000	35.300000	49.900000	17.700000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1198.680000	3.000000	0.000085	0.071000	30.000000	39.000000	1.759867	2.536267	2.279733	9.322800	6.497000	3.876100	17.451986	NaN	NaN	2.211721	3.679660	3.964064	10.845194	8.822052	5.794305	11.672398	NaN	NaN	8.243104	6.250856	0.104100	0.248434	0.903070	1.000000	0.044305	0.087626	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	ENPL_HUMAN	ENPL_HUMAN	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	100.000000	0.021100	92453.700000	5.000000	9.000000	16.000000	Spectrum21597 scans:4227,	TVEEDLGKSR	T[+28]VEEDLGKSR	G	E	99.700000	40.700000	49.700000	29.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1206.660000	3.000000	-0.000230	-0.190000	30.000000	39.000000	1.759867	2.536267	2.279733	9.322800	6.497000	3.876100	17.451986	NaN	NaN	2.211721	3.679660	3.964064	10.845194	8.822052	5.794305	11.672398	NaN	NaN	8.243104	6.250856	0.104100	0.248434	0.900818	1.000000	0.044181	0.087593	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Isoform 2 of Proteasome activator complex subunit 3 OS=Homo sapiens GN=PSME3	tr|K7ESG5|K7ESG5_HUMAN	K7ESG5_HUMAN	Proteasome activator complex subunit 3 OS=Homo sapiens GN=PSME3 PE=1 SV=1	100.000000	0.005760	0.000000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.27328.27328.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27328"	TVESEAASYLDQISR	T[+28]VESEAASYLDQISR	R	Y	99.700000	70.900000	53.400000	63.300000	Dimethyl (+28)	1695.830000	2.000000	-0.003200	-1.900000	0.000000	0.000000	0.688833	0.887700	1.276400	2.807400	18.580400	6.740050	NaN	NaN	NaN	0.865695	1.287891	2.219440	3.265843	25.229683	10.075566	NaN	NaN	NaN	2.065769	13.258787	0.335041	0.418459	1.000000	1.000000	0.637282	0.087560	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3	RS18_HUMAN	RS18_HUMAN	40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3	100.000000	0.010500	17701.300000	3.000000	5.000000	8.000000	Spectrum13671 scans:1756,	TVGVSKKK	NaN	R	-	99.000000	32.000000	35.900000	21.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	969.730000	3.000000	-0.000520	-0.540000	145.000000	152.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	ADA_HUMAN	ADA_HUMAN	Adenosine deaminase OS=Homo sapiens GN=ADA PE=1 SV=3	100.000000	0.009440	40747.100000	4.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.61704.61704.5 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=61704"	TVHAGEVGSAEVVKEAVDILKTER	TVHAGEVGSAEVVKEAVDILKTER	R	L	98.600000	37.300000	61.300000	35.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2646.460000	5.000000	-0.017000	-6.400000	212.000000	235.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.032900	28786.800000	10.000000	21.000000	25.000000	Spectrum67216 scans:41680,	TVLDAIDQMWLPVVR	T[+28]VLDAIDQM[+16]WLPVVR	W	T	99.700000	78.700000	52.800000	62.400000	Dimethyl (+28), Oxidation (+16)	1798.960000	2.000000	-0.000820	-0.450000	69.000000	83.000000	0.784200	0.303100	0.386500	0.040100	0.584950	15.961400	NaN	NaN	NaN	0.985547	0.439743	0.672057	0.046648	0.794283	23.860378	NaN	NaN	NaN	0.516098	0.617013	0.469890	0.178106	1.000000	0.786296	0.632058	0.087461	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4	sp|Q15393|SF3B3_HUMAN	SF3B3_HUMAN	Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4	100.000000	0.005270	135561.400000	2.000000	3.000000	4.000000	Spectrum9724 scans:35063,	TVLDPVTGDLSDTR	T[+28]VLDPVTGDLSDTR	R	T	99.500000	64.300000	50.400000	41.100000	Dimethyl (+28)	1515.780000	2.000000	-0.002800	-1.800000	677.000000	690.000000	0.449133	0.559033	2.457867	0.502150	7.163550	14.418050	NaN	NaN	NaN	0.564451	0.811055	4.273807	0.584150	9.727137	21.553255	NaN	NaN	NaN	0.574300	5.269096	0.010917	0.447041	0.252558	0.502017	0.630336	0.087428	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4	sp|Q15393|SF3B3_HUMAN	SF3B3_HUMAN	Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4	100.000000	0.005270	135561.400000	2.000000	3.000000	4.000000	Spectrum20638 scans:17236,	TVLDPVTGDLSDTR	T[+28]VLDPVTGDLSDTR	R	T	99.700000	85.600000	51.000000	59.400000	Dimethyl (+28), Label:13C(6) (+6)	1521.800000	2.000000	-0.000190	-0.130000	677.000000	690.000000	0.449133	0.559033	2.457867	0.502150	7.163550	14.418050	NaN	NaN	NaN	0.564451	0.811055	4.273807	0.584150	9.727137	21.553255	NaN	NaN	NaN	0.574300	5.269096	0.010917	0.447041	0.076688	0.501854	0.605585	0.087395	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	RS2_HUMAN	RS2_HUMAN	40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2	100.000000	0.029000	31307.200000	7.000000	15.000000	22.000000	Spectrum15387 scans:4571,	TVPCKVTGR	NaN	H	C	98.800000	30.400000	48.300000	11.900000	Dimethyl (+28), Carbamidomethyl (+57), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1082.650000	3.000000	-0.000350	-0.320000	179.000000	187.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	EIF3D_HUMAN	EIF3D_HUMAN	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	100.000000	0.005270	63955.800000	3.000000	4.000000	4.000000	Spectrum18211 scans:10014,	TVTTTDDPVIR	T[+28]VTTTDDPVIR	H	K	99.000000	53.300000	49.900000	34.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1254.670000	2.000000	-0.000690	-0.550000	226.000000	236.000000	0.622367	2.852033	3.251833	0.701200	0.532700	0.677400	NaN	NaN	NaN	0.782162	4.137779	5.654379	0.815705	0.723335	1.012632	NaN	NaN	NaN	0.798933	2.430557	0.013362	0.389824	0.093479	0.707104	0.594687	0.087296	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	EIF3D_HUMAN	EIF3D_HUMAN	Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1	100.000000	0.005270	63955.800000	3.000000	4.000000	4.000000	Spectrum18207 scans:10008,	TVTTTDDPVIR	T[+28]VTTTDDPVIR	H	K	99.500000	65.700000	49.700000	45.200000	Dimethyl (+28)	1244.660000	2.000000	0.000500	0.400000	226.000000	236.000000	0.622367	2.852033	3.251833	0.701200	0.532700	0.677400	NaN	NaN	NaN	0.782162	4.137779	5.654379	0.815705	0.723335	1.012632	NaN	NaN	NaN	0.798933	2.430557	0.013362	0.389824	0.014990	1.000000	0.593162	0.087230	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Homo sapiens GN=HADH PE=4 SV=1	sp|Q16836|HCDH_HUMAN	HCDH_HUMAN	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Homo sapiens GN=HADH PE=1 SV=3	90.500000	0.002360	34276.100000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64157.64157.5 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64157"	TVVLVDQTEDILAKSKKGIEESLR	TVVLVDQTEDILAKSKKGIEESLR	H	K	98.600000	36.500000	60.000000	32.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2816.660000	5.000000	0.006800	2.400000	52.000000	75.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1	sp|Q12904|AIMP1_HUMAN	AIMP1_HUMAN	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2	100.000000	0.010500	34335.000000	3.000000	4.000000	8.000000	Spectrum7469 scans:28735,	TVVSGLVN	NaN	R	H	98.700000	47.800000	46.900000	19.200000	Dimethyl (+28)	815.470000	2.000000	-0.000500	-0.610000	188.000000	195.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1 SV=4	SYYC_HUMAN	SYYC_HUMAN	Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1 SV=4	100.000000	0.002630	59127.100000	2.000000	2.000000	2.000000	Spectrum58561 scans:31529,	TVVSGLVQFVPKEELQDR	T[+28]VVSGLVQFVPKEELQDR	R	L	99.300000	39.300000	53.800000	26.300000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2109.210000	3.000000	-0.001200	-0.590000	401.000000	418.000000	6.268333	3.309267	0.426467	NaN	NaN	NaN	NaN	NaN	NaN	7.877760	4.801141	0.741552	NaN	NaN	NaN	NaN	NaN	NaN	7.877760	4.801141	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2	RCC2_HUMAN	RCC2_HUMAN	Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2	99.900000	0.001320	56066.800000	1.000000	1.000000	1.000000	Spectrum14677 scans:3392,	TVVSGSCAAH	T[+28]VVSGSC[+57]AAH	R	S	99.500000	57.600000	44.600000	41.300000	Dimethyl (+28), Carbamidomethyl (+57)	1015.480000	2.000000	0.000110	0.110000	152.000000	161.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor Tu, mitochondrial OS=Homo sapiens GN=TUFM PE=1 SV=2	EFTU_HUMAN	EFTU_HUMAN	Elongation factor Tu, mitochondrial OS=Homo sapiens GN=TUFM PE=1 SV=2	100.000000	0.003950	49524.300000	3.000000	3.000000	3.000000	Spectrum64664 scans:38805,	TVVTGIEMF	T[+28]VVTGIEMF	R	H	99.000000	56.400000	47.800000	43.500000	Dimethyl (+28)	1023.530000	2.000000	0.000540	0.530000	301.000000	309.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.035000	57471.900000	9.000000	15.000000	15.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.32420.32420.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=32420"	TVYGGGCSEMLMAH	T[+28]VYGGGC[+57]SEMLMAH	R	A	99.700000	67.900000	41.800000	26.400000	Dimethyl (+28), Carbamidomethyl (+57), Oxidation (+16)	1555.640000	2.000000	-0.006200	-4.000000	406.000000	419.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.039500	29487.900000	8.000000	18.000000	30.000000	Spectrum54517 scans:26682,	TWEKLLLAAR	NaN	R	A	99.100000	31.500000	48.400000	18.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1273.790000	3.000000	-0.000035	-0.027000	54.000000	63.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	C9J9K3_HUMAN	C9J9K3_HUMAN	40S ribosomal protein SA (Fragment) OS=Homo sapiens GN=RPSA PE=3 SV=1	100.000000	0.039500	29487.900000	8.000000	18.000000	30.000000	Spectrum54507 scans:26671,	TWEKLLLAAR	NaN	R	A	99.300000	34.500000	47.100000	20.200000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1265.810000	3.000000	-0.001400	-1.100000	54.000000	63.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	sp|P60660-2|MYL6_HUMAN	MYL6_HUMAN	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	100.000000	0.044800	16942.800000	3.000000	6.000000	10.000000	Nsco_Tails_biological_replicate2_apoptosis.18635.18635.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18635"	TYEDYVEGLR	T[+28]YEDYVEGLR	G	V	99.500000	53.600000	49.800000	38.700000	Dimethyl (+28)	1271.600000	2.000000	-0.001300	-1.100000	85.000000	94.000000	1.799033	0.673533	0.707500	0.791200	0.319050	0.403600	NaN	NaN	NaN	2.260944	0.977174	1.230221	0.920401	0.433227	0.603334	NaN	NaN	NaN	1.590673	0.705200	0.253882	0.234334	0.619094	1.000000	0.568387	0.086902	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Methylosome subunit pICln OS=Homo sapiens GN=CLNS1A PE=1 SV=1	ICLN_HUMAN	ICLN_HUMAN	Methylosome subunit pICln OS=Homo sapiens GN=CLNS1A PE=1 SV=1	100.000000	0.043500	26197.400000	3.000000	7.000000	33.000000	Spectrum53480 scans:25528,	TYEEGLSHLTAEGQATLER	T[+28]YEEGLSHLTAEGQATLER	Y	L	98.600000	37.000000	51.000000	28.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2142.040000	3.000000	-0.004600	-2.100000	169.000000	187.000000	0.516400	0.136767	0.233733	NaN	0.442450	NaN	NaN	NaN	NaN	0.648988	0.198423	0.406422	NaN	0.600788	NaN	NaN	NaN	NaN	0.648988	0.399606	NaN	0.296923	NaN	1.000000	1.000000	0.086869	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Methylosome subunit pICln OS=Homo sapiens GN=CLNS1A PE=1 SV=1	ICLN_HUMAN	ICLN_HUMAN	Methylosome subunit pICln OS=Homo sapiens GN=CLNS1A PE=1 SV=1	100.000000	0.043500	26197.400000	3.000000	7.000000	33.000000	Spectrum53484 scans:25533,	TYEEGLSHLTAEGQATLER	T[+28]YEEGLSHLTAEGQATLER	Y	L	99.700000	55.600000	51.000000	46.600000	Dimethyl (+28)	2132.040000	3.000000	-0.001400	-0.660000	169.000000	187.000000	0.516400	0.136767	0.233733	NaN	0.442450	NaN	NaN	NaN	NaN	0.648988	0.198423	0.406422	NaN	0.600788	NaN	NaN	NaN	NaN	0.648988	0.399606	NaN	0.296923	NaN	1.000000	1.000000	0.086837	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Homo sapiens GN=GFPT1	sp|Q06210-2|GFPT1_HUMAN	GFPT1_HUMAN	Isoform 2 of Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Homo sapiens GN=GFPT1	100.000000	0.013400	76742.400000	3.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.5300.5300.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=5300"	VAAVVDGR	V[+28]AAVVDGR	D	L	99.000000	70.600000	51.200000	35.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	823.480000	2.000000	0.000100	0.130000	281.000000	288.000000	0.365333	0.269433	0.755033	0.725100	0.367800	0.506600	NaN	NaN	NaN	0.459135	0.390899	1.312873	0.843507	0.499423	0.757306	NaN	NaN	NaN	0.651321	0.445161	0.182665	0.077219	0.335192	0.164588	0.554756	0.086804	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	SODC_HUMAN	SODC_HUMAN	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	100.000000	0.049000	15917.300000	7.000000	17.000000	17.000000	Nsco_Tails_biological_replicate1_apoptosis.34585.34585.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34585"	VADVSIEDSVISLSGDHCIIGR	V[+28]ADVSIEDSVISLSGDHC[+57]IIGR	G	T	98.800000	75.900000	57.600000	66.600000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2379.190000	3.000000	-0.010000	-4.200000	95.000000	116.000000	0.298567	0.423433	2.146800	0.083650	0.143450	1.736250	NaN	NaN	NaN	0.375225	0.614324	3.732916	0.097310	0.194786	2.595485	NaN	NaN	NaN	0.236268	0.404555	0.338460	0.304529	0.695355	0.648689	0.553429	0.086772	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum43920 scans:14572,	VAEPAENEQDEQDENGAEASADLR	V[+28]AEPAENEQDEQDENGAEASADLR	H	A	99.700000	72.700000	42.800000	57.100000	Dimethyl (+28)	2614.130000	2.000000	0.000660	0.250000	472.000000	495.000000	NaN	0.293900	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.426395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.426395	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum43902 scans:14551,	VAEPAENEQDEQDENGAEASADLR	V[+28]AEPAENEQDEQDENGAEASADLR	H	A	99.700000	61.000000	43.400000	52.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2624.140000	3.000000	0.003900	1.500000	472.000000	495.000000	NaN	0.293900	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.426395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.426395	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum43922 scans:14574,	VAEPAENEQDEQDENGAEASADLR	V[+28]AEPAENEQDEQDENGAEASADLR	H	A	99.700000	94.600000	43.800000	91.100000	Dimethyl (+28), Label:13C(6) (+6)	2620.140000	3.000000	-0.005200	-2.000000	472.000000	495.000000	NaN	0.293900	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.426395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.426395	NaN	NaN	NaN	NaN	NaN	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.175000	9093.600000	3.000000	19.000000	133.000000	Spectrum37178 scans:6741,	VAEVDKVTGR	V[+28]AEVDKVTGR	N	F	99.000000	51.300000	48.400000	21.700000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1138.690000	2.000000	-0.000680	-0.600000	36.000000	45.000000	3.234200	1.442333	1.143867	0.065400	0.158700	0.409400	NaN	NaN	NaN	4.064597	2.092562	1.988987	0.076080	0.215493	0.612004	NaN	NaN	NaN	2.070338	1.154028	0.488085	0.434671	1.000000	1.000000	0.544314	0.086544	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	RS21_HUMAN	RS21_HUMAN	40S ribosomal protein S21 OS=Homo sapiens GN=RPS21 PE=1 SV=1	100.000000	0.175000	9093.600000	3.000000	19.000000	133.000000	Spectrum37183 scans:6747,	VAEVDKVTGR	V[+28]AEVDKVTGR	N	F	99.300000	56.500000	49.400000	22.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1146.670000	2.000000	-0.001200	-1.100000	36.000000	45.000000	3.234200	1.442333	1.143867	0.065400	0.158700	0.409400	NaN	NaN	NaN	4.064597	2.092562	1.988987	0.076080	0.215493	0.612004	NaN	NaN	NaN	2.070338	1.154028	0.488085	0.434671	0.552580	1.000000	0.543036	0.086512	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Drebrin-like protein OS=Homo sapiens GN=DBNL PE=2 SV=1	sp|Q9UJU6|DBNL_HUMAN	DBNL_HUMAN	Drebrin-like protein OS=Homo sapiens GN=DBNL PE=1 SV=1	98.800000	0.002630	48188.300000	1.000000	2.000000	2.000000	Spectrum69853 scans:44874,	VAGTGEGGLEEMVEELNSGKVMY	V[+28]AGTGEGGLEEMVEELNSGKVM[+16]Y	R	A	99.700000	52.500000	50.400000	25.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Oxidation (+16)	2478.170000	3.000000	-0.002600	-1.000000	42.000000	64.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Drebrin-like protein OS=Homo sapiens GN=DBNL PE=2 SV=1	sp|Q9UJU6-2|DBNL_HUMAN	DBNL_HUMAN	Isoform 2 of Drebrin-like protein OS=Homo sapiens GN=DBNL	98.800000	0.002630	48275.400000	1.000000	2.000000	2.000000	Spectrum69847 scans:44867,	VAGTGEGGLEEMVEELNSGKVMY	V[+28]AGTGEGGLEEMVEELNSGKVM[+16]Y	R	A	98.900000	39.900000	50.900000	17.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Oxidation (+16)	2474.180000	3.000000	-0.005900	-2.400000	42.000000	64.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=3	GLGB_HUMAN	GLGB_HUMAN	1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=3	100.000000	0.005270	80459.100000	2.000000	4.000000	4.000000	Spectrum65028 scans:39207,	VALILQNVDLPN	V[+28]ALILQNVDLPN	R	-	99.300000	58.500000	50.400000	33.300000	Dimethyl (+28)	1335.780000	2.000000	0.000098	0.074000	691.000000	702.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3	ATPB_HUMAN	ATPB_HUMAN	ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3	100.000000	0.005760	56542.500000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.37729.37729.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37729"	VALTGLTVAEYFR	V[+28]ALTGLTVAEYFR	R	D	99.500000	63.500000	55.600000	40.100000	Dimethyl (+28)	1466.810000	2.000000	0.000810	0.550000	282.000000	294.000000	1.124450	13.688800	19.858050	1.814600	NaN	NaN	NaN	NaN	NaN	1.413158	19.859948	34.529734	2.110920	NaN	NaN	NaN	NaN	NaN	1.762039	19.859948	0.124440	NaN	0.636884	NaN	0.518685	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3	ATPB_HUMAN	ATPB_HUMAN	ATP synthase subunit beta, mitochondrial OS=Homo sapiens GN=ATP5B PE=1 SV=3	100.000000	0.006590	56542.500000	3.000000	5.000000	5.000000	Spectrum66169 scans:40489,	VALTGLTVAEYFR	V[+28]ALTGLTVAEYFR	R	D	99.700000	86.000000	51.300000	66.800000	Dimethyl (+28), Label:13C(6) (+6)	1472.830000	2.000000	0.000330	0.220000	282.000000	294.000000	1.124450	13.688800	19.858050	1.814600	NaN	NaN	NaN	NaN	NaN	1.413158	19.859948	34.529734	2.110920	NaN	NaN	NaN	NaN	NaN	1.762039	19.859948	0.124440	NaN	1.000000	NaN	0.517524	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Zinc finger CCCH-type antiviral protein 1 OS=Homo sapiens GN=ZC3HAV1	sp|Q7Z2W4|ZCCHV_HUMAN	ZCCHV_HUMAN	Zinc finger CCCH-type antiviral protein 1 OS=Homo sapiens GN=ZC3HAV1 PE=1 SV=3	100.000000	0.003950	101414.600000	2.000000	3.000000	3.000000	Spectrum10040 scans:36234,	VALVNDSLSDVTSTTSSR	V[+28]ALVNDSLSDVTSTTSSR	R	V	99.700000	63.000000	51.700000	52.100000	Dimethyl (+28)	1878.950000	3.000000	-0.002300	-1.200000	486.000000	503.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Elongator complex protein 2 OS=Homo sapiens GN=ELP2 PE=4 SV=1	F5GWY6_HUMAN	F5GWY6_HUMAN	Elongator complex protein 2 OS=Homo sapiens GN=ELP2 PE=4 SV=1	97.400000	0.010800	5482.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction5A.9098.9098.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=9098"	VAPVLETSH	V[+28]APVLETSH	M	V	98.900000	51.500000	51.800000	40.700000	Dimethyl (+28)	979.530000	2.000000	-0.000180	-0.190000	2.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Elongator complex protein 2 OS=Homo sapiens GN=ELP2 PE=4 SV=1	F5GWY6_HUMAN	F5GWY6_HUMAN	Elongator complex protein 2 OS=Homo sapiens GN=ELP2 PE=4 SV=1	98.100000	0.004480	5482.400000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.18412.18412.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18412"	VAPVLETSHVFCCPNR	V[+28]APVLETSHVFC[+57]C[+57]PNR	M	V	99.500000	85.000000	54.100000	85.000000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57)	1912.930000	3.000000	-0.001700	-0.870000	2.000000	17.000000	NaN	NaN	0.262167	0.560700	0.279600	0.497400	NaN	NaN	NaN	NaN	NaN	0.455863	0.652261	0.379659	0.743553	NaN	NaN	NaN	0.652261	0.379659	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	PA2G4_HUMAN	PA2G4_HUMAN	Proliferation-associated protein 2G4 OS=Homo sapiens GN=PA2G4 PE=1 SV=3	100.000000	0.013400	43768.700000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate2_apoptosis.3313.3313.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=3313"	VAQGTQVTGR	V[+28]AQGTQVTGR	D	K	99.400000	57.700000	52.700000	41.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1053.580000	2.000000	-0.000260	-0.250000	129.000000	138.000000	2.544900	2.142900	0.722033	0.895450	0.400650	0.447600	NaN	NaN	NaN	3.198316	3.108956	1.255492	1.041675	0.544029	0.669108	NaN	NaN	NaN	2.119996	1.826493	0.299554	0.389716	1.000000	0.412794	0.468286	0.086190	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Hypoxanthine-guanine phosphoribosyltransferase OS=Homo sapiens GN=HPRT1 PE=1 SV=2	HPRT_HUMAN	HPRT_HUMAN	Hypoxanthine-guanine phosphoribosyltransferase OS=Homo sapiens GN=HPRT1 PE=1 SV=2	100.000000	0.007900	24562.200000	3.000000	4.000000	6.000000	Spectrum39979 scans:10022,	VASLLVKR	NaN	K	T	99.000000	34.700000	42.800000	18.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	958.670000	3.000000	-0.000610	-0.640000	160.000000	167.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Hypoxanthine-guanine phosphoribosyltransferase OS=Homo sapiens GN=HPRT1 PE=1 SV=2	HPRT_HUMAN	HPRT_HUMAN	Hypoxanthine-guanine phosphoribosyltransferase OS=Homo sapiens GN=HPRT1 PE=1 SV=2	100.000000	0.007900	24562.200000	3.000000	4.000000	6.000000	Spectrum39976 scans:10019,	VASLLVKR	NaN	K	T	99.000000	33.000000	40.500000	18.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	950.690000	3.000000	-0.000290	-0.310000	160.000000	167.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	sp|P55884-2|EIF3B_HUMAN	EIF3B_HUMAN	Isoform 2 of Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B	100.000000	0.027700	99012.600000	5.000000	14.000000	21.000000	Spectrum17845 scans:9111,	VAVPEAAEER	V[+28]AVPEAAEER	N	A	99.100000	53.500000	48.400000	36.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1107.580000	2.000000	-0.001100	-1.000000	7.000000	16.000000	0.366633	0.332100	0.907567	0.805400	0.464750	0.577500	0.591629	1.231871	7.254914	0.460768	0.481816	1.578102	0.936920	0.631068	0.863293	0.395698	0.524642	3.476574	0.597796	0.545842	0.072676	0.006543	1.000000	0.118867	0.029482	0.005868	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS PE=1 SV=5	SYEP_HUMAN	SYEP_HUMAN	Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS PE=1 SV=5	100.000000	0.006590	170575.200000	4.000000	4.000000	5.000000	Spectrum3614 scans:18959,	VAVQGDVVR	V[+28]AVQGDVVR	R	E	99.200000	54.200000	47.800000	30.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	979.570000	2.000000	-0.000330	-0.340000	757.000000	765.000000	3.973533	4.138233	0.738767	0.376900	2.036100	6.831800	NaN	NaN	NaN	4.993758	6.003820	1.284588	0.438447	2.764750	10.212721	NaN	NaN	NaN	2.716103	4.384285	0.444248	0.225267	1.000000	1.000000	0.431592	0.086030	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4	RL14_HUMAN	RL14_HUMAN	60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4	100.000000	0.003950	23414.300000	2.000000	3.000000	3.000000	Spectrum9346 scans:34018,	VAYVSFGPH	V[+28]AYVSFGPH	R	A	99.700000	70.900000	47.200000	61.800000	Dimethyl (+28)	1003.510000	2.000000	0.000058	0.058000	12.000000	20.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of UPF0562 protein C7orf55 OS=Homo sapiens GN=C7orf55	sp|Q96HJ9-2|CG055_HUMAN	CG055_HUMAN	Isoform 2 of UPF0562 protein C7orf55 OS=Homo sapiens GN=C7orf55	100.000000	0.003950	0.000000	3.000000	3.000000	3.000000	Spectrum48389 scans:19706,	VCEVCSAYLGLHDNDR	V[+28]C[+57]EVC[+57]SAYLGLHDNDR	R	R	99.700000	53.900000	44.200000	53.900000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57)	1934.860000	3.000000	-0.005400	-2.800000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing) OS=Homo sapiens GN=DAK PE=1 SV=2	DHAK_HUMAN	DHAK_HUMAN	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing) OS=Homo sapiens GN=DAK PE=1 SV=2	99.600000	0.004630	58930.100000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction6A.37128.37128.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37128"	VCSTLLGLEEHLNALDR	V[+28]C[+57]STLLGLEEHLNALDR	R	A	98.600000	71.800000	57.200000	58.000000	Dimethyl (+28), Carbamidomethyl (+57)	1967.020000	3.000000	0.003300	1.700000	381.000000	397.000000	0.796767	0.761533	1.372400	0.597600	1.527000	1.430800	NaN	NaN	NaN	1.001341	1.104846	2.386368	0.695187	2.073461	2.138874	NaN	NaN	NaN	0.848264	1.589153	0.113661	0.188323	1.000000	1.000000	0.386845	0.085934	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing) OS=Homo sapiens GN=DAK PE=1 SV=2	DHAK_HUMAN	DHAK_HUMAN	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing) OS=Homo sapiens GN=DAK PE=1 SV=2	99.600000	0.004630	58930.100000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate_3_fraction6A.37164.37164.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=37164"	VCSTLLGLEEHLNALDR	V[+28]C[+57]STLLGLEEHLNALDR	R	A	99.700000	92.200000	57.300000	82.300000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1977.030000	3.000000	0.002600	1.300000	381.000000	397.000000	0.796767	0.761533	1.372400	0.597600	1.527000	1.430800	NaN	NaN	NaN	1.001341	1.104846	2.386368	0.695187	2.073461	2.138874	NaN	NaN	NaN	0.848264	1.589153	0.113661	0.188323	1.000000	1.000000	0.376764	0.085902	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L30 OS=Homo sapiens GN=RPL30 PE=1 SV=2	RL30_HUMAN	RL30_HUMAN	60S ribosomal protein L30 OS=Homo sapiens GN=RPL30 PE=1 SV=2	100.000000	0.007900	12766.700000	1.000000	4.000000	6.000000	Spectrum12526 scans:46024,	VCTLAIIDPGDSDIIR	V[+28]C[+57]TLAIIDPGDSDIIR	R	S	99.700000	81.600000	52.300000	68.400000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1794.940000	2.000000	-0.003100	-1.700000	91.000000	106.000000	0.473333	0.116733	0.248867	0.297900	0.041650	0.143650	NaN	NaN	NaN	0.594864	0.169359	0.432736	0.346546	0.056555	0.214740	NaN	NaN	NaN	0.470705	0.112957	0.164183	0.294822	1.000000	1.000000	0.376152	0.085806	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	60S ribosomal protein L30 OS=Homo sapiens GN=RPL30 PE=1 SV=2	RL30_HUMAN	RL30_HUMAN	60S ribosomal protein L30 OS=Homo sapiens GN=RPL30 PE=1 SV=2	100.000000	0.007900	12766.700000	1.000000	4.000000	6.000000	Spectrum12525 scans:46021,	VCTLAIIDPGDSDIIR	V[+28]C[+57]TLAIIDPGDSDIIR	R	S	99.700000	107.000000	52.200000	84.800000	Dimethyl (+28), Carbamidomethyl (+57)	1784.930000	2.000000	-0.005600	-3.100000	91.000000	106.000000	0.473333	0.116733	0.248867	0.297900	0.041650	0.143650	NaN	NaN	NaN	0.594864	0.169359	0.432736	0.346546	0.056555	0.214740	NaN	NaN	NaN	0.470705	0.112957	0.164183	0.294822	1.000000	1.000000	0.375541	0.085711	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLA2	sp|Q9P2R7-2|SUCB1_HUMAN	SUCB1_HUMAN	Isoform 2 of Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLA2	99.900000	0.001320	48022.700000	1.000000	1.000000	1.000000	Spectrum65136 scans:39325,	VDDAKALIADSGLKILACDDLDEAAR	V[+28]DDAKALIADSGLKILAC[+57]DDLDEAAR	R	M	99.700000	54.500000	56.700000	44.300000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Carbamidomethyl (+57), Label:13C(6) (+6)	2855.540000	4.000000	-0.009300	-3.300000	391.000000	416.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Aminopeptidase B OS=Homo sapiens GN=RNPEP PE=4 SV=1	A6NKB8_HUMAN	A6NKB8_HUMAN	Aminopeptidase B OS=Homo sapiens GN=RNPEP PE=4 SV=1	100.000000	0.006590	68152.300000	3.000000	5.000000	5.000000	Spectrum64769 scans:38921,	VDIIPGFEFDR	V[+28]DIIPGFEFDR	R	W	99.400000	58.200000	50.100000	45.100000	Dimethyl (+28), Label:13C(6) (+6)	1340.710000	2.000000	-0.000031	-0.023000	432.000000	442.000000	1.844467	0.510633	1.199100	1.027650	0.638750	0.920300	NaN	NaN	NaN	2.318043	0.740836	2.085029	1.195463	0.867337	1.375738	NaN	NaN	NaN	1.756753	0.804086	0.196877	0.049974	1.000000	0.212254	0.371919	0.085521	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Replication protein A 14 kDa subunit OS=Homo sapiens GN=RPA3 PE=1 SV=1	RFA3_HUMAN	RFA3_HUMAN	Replication protein A 14 kDa subunit OS=Homo sapiens GN=RPA3 PE=1 SV=1	95.700000	0.006590	13551.000000	1.000000	3.000000	5.000000	Spectrum29334 scans:13350,	VDMMDLPR	V[+42]DMMDLPR	M	S	99.000000	53.200000	42.200000	36.900000	Acetyl (+42), Oxidation (+16), Oxidation (+16), Label:13C(6) (+6)	1055.470000	2.000000	-0.001400	-1.400000	2.000000	9.000000	0.517700	0.906700	2.141100	0.734550	0.327150	0.441400	NaN	NaN	NaN	0.650622	1.315456	3.723005	0.854501	0.444226	0.659840	NaN	NaN	NaN	0.752561	0.879841	0.085713	0.292670	1.000000	1.000000	0.370726	0.085457	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Replication protein A 14 kDa subunit OS=Homo sapiens GN=RPA3 PE=1 SV=1	RFA3_HUMAN	RFA3_HUMAN	Replication protein A 14 kDa subunit OS=Homo sapiens GN=RPA3 PE=1 SV=1	95.700000	0.006590	13551.000000	1.000000	3.000000	5.000000	Spectrum29323 scans:13306,	VDMMDLPR	V[+42]DMMDLPR	M	S	99.000000	54.500000	41.200000	37.800000	Acetyl (+42), Oxidation (+16), Oxidation (+16), Label:13C(6)15N(4) (+10)	1059.460000	2.000000	0.000150	0.140000	2.000000	9.000000	0.517700	0.906700	2.141100	0.734550	0.327150	0.441400	NaN	NaN	NaN	0.650622	1.315456	3.723005	0.854501	0.444226	0.659840	NaN	NaN	NaN	0.752561	0.879841	0.085713	0.292670	1.000000	0.579000	0.370133	0.085426	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Replication protein A 14 kDa subunit OS=Homo sapiens GN=RPA3 PE=1 SV=1	RFA3_HUMAN	RFA3_HUMAN	Replication protein A 14 kDa subunit OS=Homo sapiens GN=RPA3 PE=1 SV=1	95.700000	0.006590	13551.000000	1.000000	3.000000	5.000000	Spectrum29337 scans:13367,	VDMMDLPR	V[+42]DMMDLPR	M	S	99.000000	55.200000	40.900000	38.900000	Acetyl (+42), Oxidation (+16), Oxidation (+16)	1049.450000	2.000000	-0.000620	-0.590000	2.000000	9.000000	0.517700	0.906700	2.141100	0.734550	0.327150	0.441400	NaN	NaN	NaN	0.650622	1.315456	3.723005	0.854501	0.444226	0.659840	NaN	NaN	NaN	0.752561	0.879841	0.085713	0.292670	1.000000	0.578670	0.369542	0.085394	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Replication protein A 14 kDa subunit OS=Homo sapiens GN=RPA3 PE=1 SV=1	RFA3_HUMAN	RFA3_HUMAN	Replication protein A 14 kDa subunit OS=Homo sapiens GN=RPA3 PE=1 SV=1	96.000000	0.017900	13551.000000	1.000000	3.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.21174.21174.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21174"	VDMMDLPR	V[+42]DMMDLPR	M	S	99.000000	51.100000	45.600000	16.400000	Acetyl (+42), Oxidation (+16), Label:13C(6)15N(4) (+10)	1043.470000	2.000000	0.000059	0.057000	2.000000	9.000000	0.517700	0.906700	2.141100	0.734550	0.327150	0.441400	NaN	NaN	NaN	0.650622	1.315456	3.723005	0.854501	0.444226	0.659840	NaN	NaN	NaN	0.752561	0.879841	0.085713	0.292670	1.000000	0.599154	0.365456	0.085363	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Replication protein A 14 kDa subunit OS=Homo sapiens GN=RPA3 PE=1 SV=1	RFA3_HUMAN	RFA3_HUMAN	Replication protein A 14 kDa subunit OS=Homo sapiens GN=RPA3 PE=1 SV=1	96.000000	0.017900	13551.000000	1.000000	3.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.28820.28820.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28820"	VDMMDLPR	V[+42]DMMDLPR	M	S	99.000000	57.200000	46.700000	37.100000	Acetyl (+42)	1017.460000	2.000000	-0.000520	-0.510000	2.000000	9.000000	0.517700	0.906700	2.141100	0.734550	0.327150	0.441400	NaN	NaN	NaN	0.650622	1.315456	3.723005	0.854501	0.444226	0.659840	NaN	NaN	NaN	0.752561	0.879841	0.085713	0.292670	1.000000	1.000000	0.361458	0.085331	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	DYHC1_HUMAN	DYHC1_HUMAN	Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5	100.000000	0.065800	532387.600000	4.000000	5.000000	5.000000	Nsco_Tails_biological_replicate_3_fraction2A.7005.7005.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=7005"	VDNEFDQR	V[+28]DNEFDQR	R	L	98.700000	49.800000	46.500000	34.600000	Dimethyl (+28)	1049.480000	2.000000	-0.000400	-0.380000	4256.000000	4263.000000	11.438000	3.324033	6.068300	1.018350	1.740950	1.419950	NaN	NaN	NaN	14.374764	4.822565	10.551730	1.184644	2.363976	2.122655	NaN	NaN	NaN	7.779704	3.593270	0.424933	0.209848	1.000000	1.000000	0.360894	0.085268	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2	LSM3_HUMAN	LSM3_HUMAN	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2	100.000000	0.008640	11827.500000	3.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.29828.29828.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29828"	VDQQQTTNTVEEPLDLIR	V[+28]DQQQTTNTVEEPLDLIR	D	L	99.700000	87.100000	57.500000	85.500000	Dimethyl (+28)	2126.080000	2.000000	-0.001400	-0.650000	5.000000	22.000000	0.497400	NaN	NaN	0.602750	NaN	NaN	NaN	NaN	NaN	0.625110	NaN	NaN	0.701178	NaN	NaN	NaN	NaN	NaN	0.663144	NaN	0.036473	NaN	0.506241	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	RS3A_HUMAN	RS3A_HUMAN	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	100.000000	0.009220	29927.300000	6.000000	7.000000	7.000000	Spectrum20149 scans:15021,	VDVKTTDGYLLR	NaN	H	L	98.800000	32.800000	50.500000	20.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1444.850000	3.000000	-0.000440	-0.310000	125.000000	136.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Glucosamine 6-phosphate N-acetyltransferase (Fragment) OS=Homo sapiens GN=GNPNAT1 PE=4 SV=1	GNA1_HUMAN	GNA1_HUMAN	Glucosamine 6-phosphate N-acetyltransferase OS=Homo sapiens GN=GNPNAT1 PE=1 SV=1	99.900000	0.002880	20731.300000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate1_apoptosis.11078.11078.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=11078"	VEDVVVSDECR	V[+28]EDVVVSDEC[+57]R	R	G	99.700000	69.000000	48.900000	56.300000	Dimethyl (+28), Carbamidomethyl (+57)	1333.620000	2.000000	-0.001500	-1.100000	119.000000	129.000000	1.005967	0.471600	0.447600	NaN	0.501650	NaN	NaN	NaN	NaN	1.264254	0.684205	0.778299	NaN	0.681173	NaN	NaN	NaN	NaN	1.264254	0.682689	NaN	0.001414	NaN	0.006585	1.000000	0.085080	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	RS28_HUMAN	RS28_HUMAN	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	100.000000	0.031600	7822.900000	4.000000	14.000000	24.000000	Spectrum19385 scans:12578,	VEFMDDTSR	V[+28]EFMDDTSR	R	S	99.200000	50.600000	42.900000	34.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1136.510000	2.000000	0.000270	0.240000	32.000000	40.000000	0.712733	0.432567	0.834067	4.097500	11.867500	2.681450	NaN	NaN	NaN	0.895731	0.627575	1.450298	4.766613	16.114468	4.008446	NaN	NaN	NaN	2.831172	8.371022	0.381747	0.460100	1.000000	1.000000	0.341200	0.085049	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	RS28_HUMAN	RS28_HUMAN	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	100.000000	0.031600	7822.900000	4.000000	14.000000	24.000000	Spectrum19388 scans:12581,	VEFMDDTSR	V[+28]EFMDDTSR	R	S	99.700000	64.300000	42.000000	45.100000	Dimethyl (+28)	1126.500000	2.000000	-0.000380	-0.340000	32.000000	40.000000	0.712733	0.432567	0.834067	4.097500	11.867500	2.681450	NaN	NaN	NaN	0.895731	0.627575	1.450298	4.766613	16.114468	4.008446	NaN	NaN	NaN	2.831172	8.371022	0.381747	0.460100	1.000000	1.000000	0.339697	0.085018	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	RS28_HUMAN	RS28_HUMAN	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	100.000000	0.031600	7822.900000	4.000000	14.000000	24.000000	Spectrum17263 scans:7945,	VEFMDDTSR	V[+28]EFMDDTSR	R	S	99.700000	63.900000	41.100000	44.000000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(4) (+10)	1152.500000	2.000000	-0.000510	-0.440000	32.000000	40.000000	0.712733	0.432567	0.834067	4.097500	11.867500	2.681450	NaN	NaN	NaN	0.895731	0.627575	1.450298	4.766613	16.114468	4.008446	NaN	NaN	NaN	2.831172	8.371022	0.381747	0.460100	1.000000	1.000000	0.339198	0.084987	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	RS28_HUMAN	RS28_HUMAN	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	100.000000	0.031600	7822.900000	4.000000	14.000000	24.000000	Spectrum17359 scans:8128,	VEFMDDTSR	V[+28]EFMDDTSR	R	S	99.700000	64.400000	40.800000	43.900000	Dimethyl (+28), Oxidation (+16)	1142.490000	2.000000	-0.000300	-0.260000	32.000000	40.000000	0.712733	0.432567	0.834067	4.097500	11.867500	2.681450	NaN	NaN	NaN	0.895731	0.627575	1.450298	4.766613	16.114468	4.008446	NaN	NaN	NaN	2.831172	8.371022	0.381747	0.460100	1.000000	1.000000	0.328132	0.084955	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	RS28_HUMAN	RS28_HUMAN	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	100.000000	0.031600	7822.900000	4.000000	14.000000	24.000000	Spectrum17279 scans:7967,	VEFMDDTSR	V[+28]EFMDDTSR	R	S	99.700000	69.900000	42.900000	54.300000	Dimethyl (+28), Oxidation (+16), Label:13C(6) (+6)	1148.510000	2.000000	-0.000290	-0.250000	32.000000	40.000000	0.712733	0.432567	0.834067	4.097500	11.867500	2.681450	NaN	NaN	NaN	0.895731	0.627575	1.450298	4.766613	16.114468	4.008446	NaN	NaN	NaN	2.831172	8.371022	0.381747	0.460100	1.000000	1.000000	0.327668	0.084924	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	GRP78_HUMAN	GRP78_HUMAN	78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2	100.000000	0.015800	72316.700000	7.000000	10.000000	12.000000	Spectrum40660 scans:10816,	VEIIANDQGNR	V[+28]EIIANDQGNR	R	I	99.700000	65.300000	49.800000	0.000000	Dimethyl (+28), Label:13C(6) (+6)	1261.670000	2.000000	-0.000570	-0.450000	50.000000	60.000000	0.484733	0.330333	0.689467	9.721200	0.691100	0.331800	NaN	NaN	NaN	0.609191	0.479253	1.198864	11.308652	0.938421	0.496001	NaN	NaN	NaN	5.958922	0.708837	0.461266	0.199406	1.000000	0.207043	0.327204	0.084893	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	sp|P49368|TCPG_HUMAN	TCPG_HUMAN	T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4	100.000000	0.004670	60517.400000	2.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.44136.44136.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44136"	VEKIPGGIIEDSCVLR	V[+28]EKIPGGIIEDSC[+57]VLR	R	G	99.200000	67.400000	57.900000	53.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1858.030000	3.000000	-0.007400	-4.000000	201.000000	216.000000	18.115800	8.283767	0.449933	NaN	NaN	0.427600	NaN	NaN	NaN	22.767123	12.018232	0.782357	NaN	NaN	0.639211	NaN	NaN	NaN	22.767123	12.018232	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	TBCB_HUMAN	TBCB_HUMAN	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	100.000000	0.007900	27307.500000	4.000000	6.000000	6.000000	Spectrum43062 scans:13569,	VEKYTISQEAYDQR	V[+28]EKYTISQEAYDQR	R	Q	99.700000	52.000000	51.600000	36.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1802.920000	3.000000	-0.000570	-0.320000	104.000000	117.000000	NaN	NaN	NaN	125.800600	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.343580	NaN	NaN	NaN	NaN	NaN	146.343580	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	AL9A1_HUMAN	AL9A1_HUMAN	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	100.000000	0.018400	53784.000000	4.000000	9.000000	14.000000	Spectrum44556 scans:15311,	VEPADASGTEKAFEPATGR	V[+28]EPADASGTEKAFEPATGR	R	V	99.700000	54.100000	52.900000	46.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1998.030000	3.000000	0.000045	0.023000	20.000000	38.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	AL9A1_HUMAN	AL9A1_HUMAN	4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3	100.000000	0.018400	53784.000000	4.000000	9.000000	14.000000	Spectrum44603 scans:15365,	VEPADASGTEKAFEPATGR	V[+28]EPADASGTEKAFEPATGR	R	V	99.700000	64.500000	52.000000	56.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2006.010000	3.000000	-0.001300	-0.650000	20.000000	38.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	sp|P60660-2|MYL6_HUMAN	MYL6_HUMAN	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	100.000000	0.010500	16942.800000	4.000000	7.000000	8.000000	Spectrum18125 scans:9806,	VFDKEGNGTVMGAEIR	V[+28]FDKEGNGTVM[+16]GAEIR	R	H	98.900000	36.100000	52.400000	0.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Oxidation (+16), Label:13C(6) (+6)	1803.950000	3.000000	0.001700	0.950000	95.000000	110.000000	NaN	NaN	21.481167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.352055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	sp|P60660-2|MYL6_HUMAN	MYL6_HUMAN	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	100.000000	0.010500	16942.800000	4.000000	7.000000	8.000000	Spectrum19726 scans:13567,	VFDKEGNGTVMGAEIR	V[+28]FDKEGNGTVM[+16]GAEIR	R	H	99.600000	45.200000	51.900000	0.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1795.920000	3.000000	-0.002600	-1.500000	95.000000	110.000000	NaN	NaN	21.481167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.352055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	sp|P60660-2|MYL6_HUMAN	MYL6_HUMAN	Isoform Smooth muscle of Myosin light polypeptide 6 OS=Homo sapiens GN=MYL6	100.000000	0.010500	16942.800000	4.000000	7.000000	8.000000	Spectrum18119 scans:9789,	VFDKEGNGTVMGAEIR	V[+28]FDKEGNGTVM[+16]GAEIR	R	H	99.700000	41.500000	51.600000	0.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Oxidation (+16), Label:13C(6)15N(4) (+10)	1811.920000	3.000000	-0.000190	-0.100000	95.000000	110.000000	NaN	NaN	21.481167	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.352055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1	sp|Q08257|QOR_HUMAN	QOR_HUMAN	Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1	100.000000	0.005270	35189.300000	3.000000	3.000000	4.000000	Spectrum59998 scans:33245,	VFEFGGPEVLKLR	V[+28]FEFGGPEVLKLR	R	S	99.700000	57.700000	51.300000	50.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1563.910000	3.000000	-0.000510	-0.330000	13.000000	25.000000	12.148267	7.709067	0.576633	NaN	3.097100	NaN	NaN	NaN	NaN	15.267396	11.184447	1.002666	NaN	4.205445	NaN	NaN	NaN	NaN	15.267396	7.694946	NaN	0.246568	NaN	1.000000	1.000000	0.084552	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	RS3A_HUMAN	RS3A_HUMAN	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	100.000000	0.009220	29927.300000	6.000000	7.000000	7.000000	Spectrum13233 scans:48992,	VFEVSLADLQ	V[+28]FEVSLADLQ	R	N	98.500000	50.500000	49.200000	30.000000	Dimethyl (+28)	1147.610000	2.000000	0.000320	0.280000	66.000000	75.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	RS3A_HUMAN	RS3A_HUMAN	40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2	100.000000	0.002360	29927.300000	1.000000	1.000000	1.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64474.64474.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64474"	VFEVSLADLQNDEVAFR	V[+28]FEVSLADLQNDEVAFR	R	K	99.700000	93.300000	55.900000	87.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1988.990000	2.000000	-0.015000	-7.700000	66.000000	82.000000	1.223400	0.308400	0.554267	0.969700	1.641600	1.572250	NaN	NaN	NaN	1.537514	0.447432	0.963774	1.128050	2.229072	2.350325	NaN	NaN	NaN	1.332782	1.338252	0.097034	0.373890	0.852428	1.000000	0.288086	0.084459	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	PPCE_HUMAN	PPCE_HUMAN	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	100.000000	0.021100	80683.500000	3.000000	10.000000	16.000000	Spectrum65797 scans:40064,	VFLDPNILSDDGTVALR	V[+28]FLDPNILSDDGTVALR	R	G	99.100000	59.900000	53.200000	53.200000	Dimethyl (+28), Label:13C(6) (+6)	1878.020000	2.000000	0.000290	0.150000	112.000000	128.000000	NaN	4.864450	NaN	0.828700	0.641800	0.773900	NaN	NaN	NaN	NaN	7.057428	NaN	0.964025	0.871478	1.156888	NaN	NaN	NaN	0.964025	3.964453	NaN	0.421784	NaN	1.000000	1.000000	0.084428	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	PPCE_HUMAN	PPCE_HUMAN	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	100.000000	0.021100	80683.500000	3.000000	10.000000	16.000000	Spectrum65835 scans:40106,	VFLDPNILSDDGTVALR	V[+28]FLDPNILSDDGTVALR	R	G	99.700000	96.800000	53.000000	88.900000	Dimethyl (+28)	1872.000000	2.000000	-0.000820	-0.440000	112.000000	128.000000	NaN	4.864450	NaN	0.828700	0.641800	0.773900	NaN	NaN	NaN	NaN	7.057428	NaN	0.964025	0.871478	1.156888	NaN	NaN	NaN	0.964025	3.964453	NaN	0.421784	NaN	1.000000	1.000000	0.084397	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	PPCE_HUMAN	PPCE_HUMAN	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	100.000000	0.034700	80683.500000	3.000000	8.000000	15.000000	Nsco_Tails_biological_replicate_3_fraction6A.40098.40098.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=40098"	VFLDPNILSDDGTVALR	V[+28]FLDPNILSDDGTVALR	R	G	99.400000	63.600000	57.600000	59.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1882.010000	2.000000	-0.002400	-1.300000	112.000000	128.000000	NaN	4.864450	NaN	0.828700	0.641800	0.773900	NaN	NaN	NaN	NaN	7.057428	NaN	0.964025	0.871478	1.156888	NaN	NaN	NaN	0.964025	3.964453	NaN	0.421784	NaN	1.000000	1.000000	0.084367	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV=2	FAAA_HUMAN	FAAA_HUMAN	Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV=2	100.000000	0.002630	46357.600000	2.000000	2.000000	2.000000	Spectrum62898 scans:36834,	VFLQNLLSVSQAR	V[+28]FLQNLLSVSQAR	R	L	98.600000	51.900000	51.100000	38.800000	Dimethyl (+28), Label:13C(6) (+6)	1507.880000	2.000000	-0.001200	-0.800000	83.000000	95.000000	221.947333	1.274367	0.088500	0.238100	0.105750	0.215050	NaN	NaN	NaN	278.933434	1.848873	0.153886	0.276981	0.143594	0.321474	NaN	NaN	NaN	139.605208	0.996234	0.482371	0.450655	1.000000	1.000000	0.286658	0.084336	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	EFHD2_HUMAN	EFHD2_HUMAN	EF-hand domain-containing protein D2 OS=Homo sapiens GN=EFHD2 PE=1 SV=1	100.000000	0.014500	26680.400000	5.000000	8.000000	11.000000	Spectrum64173 scans:38257,	VFNPYTEFKEF	V[+28]FNPYTEFKEF	R	S	98.700000	50.400000	49.800000	42.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1483.750000	2.000000	-0.000820	-0.550000	79.000000	89.000000	1.128567	1.543833	1.951433	9.762100	3.194250	0.384300	NaN	NaN	NaN	1.418332	2.239820	3.393207	11.356231	4.337362	0.574482	NaN	NaN	NaN	6.387281	3.288591	0.410304	0.196534	1.000000	1.000000	0.284193	0.084305	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Homo sapiens GN=AHSA1 PE=1 SV=1	AHSA1_HUMAN	AHSA1_HUMAN	Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Homo sapiens GN=AHSA1 PE=1 SV=1	100.000000	0.007900	38256.400000	4.000000	5.000000	6.000000	Spectrum68450 scans:43160,	VFTTQELVQAF	V[+28]FTTQELVQAF	R	T	99.000000	54.700000	50.000000	30.500000	Dimethyl (+28)	1309.690000	2.000000	0.000240	0.180000	225.000000	235.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Homo sapiens GN=AHSA1 PE=1 SV=1	AHSA1_HUMAN	AHSA1_HUMAN	Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Homo sapiens GN=AHSA1 PE=1 SV=1	100.000000	0.007900	38256.400000	4.000000	5.000000	6.000000	Spectrum70872 scans:46237,	VFTTQELVQAFTHAPATLEADR	V[+28]FTTQELVQAFTHAPATLEADR	R	G	99.700000	71.900000	54.500000	60.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2482.270000	3.000000	-0.003700	-1.500000	225.000000	246.000000	1.665600	0.561700	0.337300	0.846750	0.225350	0.548550	NaN	NaN	NaN	2.093251	0.814924	0.586507	0.985023	0.305995	0.820016	NaN	NaN	NaN	1.539137	0.560460	0.219997	0.271327	1.000000	1.000000	0.283497	0.083454	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Homo sapiens GN=AHSA1 PE=1 SV=1	AHSA1_HUMAN	AHSA1_HUMAN	Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Homo sapiens GN=AHSA1 PE=1 SV=1	100.000000	0.007900	38256.400000	4.000000	5.000000	6.000000	Spectrum70878 scans:46245,	VFTTQELVQAFTHAPATLEADR	V[+28]FTTQELVQAFTHAPATLEADR	R	G	99.700000	72.300000	54.400000	63.500000	Dimethyl (+28)	2472.260000	3.000000	-0.001400	-0.590000	225.000000	246.000000	1.665600	0.561700	0.337300	0.846750	0.225350	0.548550	NaN	NaN	NaN	2.093251	0.814924	0.586507	0.985023	0.305995	0.820016	NaN	NaN	NaN	1.539137	0.560460	0.219997	0.271327	1.000000	1.000000	0.271518	0.083423	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Fermitin family homolog 3 OS=Homo sapiens GN=FERMT3	sp|Q86UX7-2|URP2_HUMAN	URP2_HUMAN	Isoform 2 of Fermitin family homolog 3 OS=Homo sapiens GN=FERMT3	95.400000	0.001320	75414.200000	1.000000	1.000000	1.000000	Spectrum53375 scans:25413,	VFVGEEDPEAESVTLR	V[+28]FVGEEDPEAESVTLR	R	V	98.800000	55.300000	50.400000	49.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1813.890000	2.000000	-0.002800	-1.500000	20.000000	35.000000	0.691267	0.978000	1.126533	8.313500	34.064600	4.187800	NaN	NaN	NaN	0.868753	1.418899	1.958848	9.671078	46.255143	6.260259	NaN	NaN	NaN	5.269915	23.837021	0.442966	0.410269	1.000000	1.000000	0.269619	0.083393	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	sp|P33316|DUT_HUMAN	DUT_HUMAN	Deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial OS=Homo sapiens GN=DUT PE=1 SV=4	100.000000	0.005760	26545.800000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.15137.15137.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15137"	VGAGVIDEDYR	V[+28]GAGVIDEDYR	D	G	99.400000	62.100000	51.200000	52.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1230.610000	2.000000	-0.006700	-5.400000	184.000000	194.000000	0.596033	0.304500	0.511267	0.726300	0.678800	0.947450	NaN	NaN	NaN	0.749068	0.441774	0.889005	0.844903	0.921719	1.416324	NaN	NaN	NaN	0.796986	0.681746	0.038230	0.215466	0.304261	1.000000	0.257323	0.083363	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=4 SV=1	E9PPJ0_HUMAN	E9PPJ0_HUMAN	Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=4 SV=1	100.000000	0.005270	98154.100000	2.000000	4.000000	4.000000	Spectrum19144 scans:11955,	VGEPVALSEEER	V[+28]GEPVALSEEER	R	L	99.500000	59.300000	49.000000	50.700000	Dimethyl (+28)	1341.680000	2.000000	-0.000082	-0.061000	135.000000	146.000000	0.172900	0.081833	0.561300	NaN	NaN	NaN	NaN	NaN	NaN	0.217293	0.118725	0.976004	NaN	NaN	NaN	NaN	NaN	NaN	0.217293	0.118725	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=4 SV=1	E9PPJ0_HUMAN	E9PPJ0_HUMAN	Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=4 SV=1	100.000000	0.005270	98154.100000	2.000000	4.000000	4.000000	Spectrum19148 scans:11961,	VGEPVALSEEER	V[+28]GEPVALSEEER	R	L	99.700000	74.800000	49.200000	44.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1351.680000	2.000000	-0.001400	-1.000000	135.000000	146.000000	0.172900	0.081833	0.561300	NaN	NaN	NaN	NaN	NaN	NaN	0.217293	0.118725	0.976004	NaN	NaN	NaN	NaN	NaN	NaN	0.217293	0.118725	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens GN=HNRNPAB PE=4 SV=1	D6R9P3_HUMAN	D6R9P3_HUMAN	Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens GN=HNRNPAB PE=4 SV=1	98.800000	0.003950	30285.000000	1.000000	2.000000	3.000000	Spectrum19251 scans:12164,	VGGLNPEATEEKIR	V[+28]GGLNPEATEEKIR	F	E	99.700000	42.200000	51.900000	15.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1585.880000	3.000000	0.000085	0.054000	158.000000	171.000000	2.095267	1.362900	0.373300	NaN	1.832900	NaN	NaN	NaN	NaN	2.633237	1.977319	0.649105	NaN	2.488832	NaN	NaN	NaN	NaN	2.633237	2.233075	NaN	0.072596	NaN	1.000000	1.000000	0.082915	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens GN=HNRNPAB PE=4 SV=1	D6R9P3_HUMAN	D6R9P3_HUMAN	Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens GN=HNRNPAB PE=4 SV=1	98.800000	0.003950	30285.000000	1.000000	2.000000	3.000000	Spectrum19243 scans:12145,	VGGLNPEATEEKIR	V[+28]GGLNPEATEEKIR	F	E	99.700000	52.500000	51.700000	34.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1577.900000	3.000000	0.001200	0.790000	158.000000	171.000000	2.095267	1.362900	0.373300	NaN	1.832900	NaN	NaN	NaN	NaN	2.633237	1.977319	0.649105	NaN	2.488832	NaN	NaN	NaN	NaN	2.633237	2.233075	NaN	0.072596	NaN	1.000000	1.000000	0.082678	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3	AATC_HUMAN	AATC_HUMAN	Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3	100.000000	0.011900	46230.100000	4.000000	6.000000	9.000000	Spectrum46137 scans:17099,	VGGVQSLGGTGALR	V[+28]GGVQSLGGTGALR	R	I	99.400000	61.300000	50.500000	36.100000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1308.740000	2.000000	-0.001700	-1.300000	101.000000	114.000000	0.336200	0.260600	0.976467	NaN	NaN	4.217350	NaN	NaN	NaN	0.422521	0.378083	1.697908	NaN	NaN	6.304432	NaN	NaN	NaN	0.422521	0.378083	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3	AATC_HUMAN	AATC_HUMAN	Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3	100.000000	0.011900	46230.100000	4.000000	6.000000	9.000000	Spectrum46145 scans:17108,	VGGVQSLGGTGALR	V[+28]GGVQSLGGTGALR	R	I	99.700000	74.000000	50.400000	42.800000	Dimethyl (+28), Label:13C(6) (+6)	1304.750000	2.000000	-0.000410	-0.310000	101.000000	114.000000	0.336200	0.260600	0.976467	NaN	NaN	4.217350	NaN	NaN	NaN	0.422521	0.378083	1.697908	NaN	NaN	6.304432	NaN	NaN	NaN	0.422521	0.378083	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	RS8_HUMAN	RS8_HUMAN	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	100.000000	0.008960	24188.400000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.18170.18170.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=18170"	VGNFSWGSECCTR	V[+28]GNFSWGSEC[+57]C[+57]TR	D	K	99.700000	61.900000	42.800000	51.000000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1596.670000	2.000000	-0.003400	-2.100000	62.000000	74.000000	0.260267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.327091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.327091	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2	RFA1_HUMAN	RFA1_HUMAN	Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2	100.000000	0.007900	68121.000000	3.000000	4.000000	6.000000	Spectrum32175 scans:26640,	VGQLSEGAIAAIM	V[+28]GQLSEGAIAAIM	M	Q	99.700000	79.700000	50.100000	55.500000	Dimethyl (+28)	1286.690000	2.000000	-0.003600	-2.800000	2.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2	RFA1_HUMAN	RFA1_HUMAN	Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2	100.000000	0.007900	68121.000000	3.000000	4.000000	6.000000	Spectrum31258 scans:20050,	VGQLSEGAIAAIM	V[+28]GQLSEGAIAAIM	M	Q	99.700000	79.400000	49.800000	45.900000	Dimethyl (+28), Oxidation (+16)	1302.680000	2.000000	-0.000580	-0.440000	2.000000	14.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.030300	53123.900000	9.000000	17.000000	23.000000	Spectrum34216 scans:3380,	VGSGVSGGEEGAR	V[+28]GSGVSGGEEGAR	F	Y	99.500000	56.800000	45.400000	45.200000		1160.540000	2.000000	-0.000660	-0.570000	124.000000	136.000000	1.171267	NaN	NaN	NaN	NaN	0.675600	NaN	NaN	NaN	1.471995	NaN	NaN	NaN	NaN	1.009941	NaN	NaN	NaN	1.471995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	6PGD_HUMAN	6PGD_HUMAN	6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3	100.000000	0.030300	53123.900000	9.000000	17.000000	23.000000	Spectrum34669 scans:3889,	VGSGVSGGEEGAR	V[+28]GSGVSGGEEGAR	F	Y	99.700000	79.100000	46.800000	59.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1198.580000	2.000000	-0.000930	-0.780000	124.000000	136.000000	1.171267	NaN	NaN	NaN	NaN	0.675600	NaN	NaN	NaN	1.471995	NaN	NaN	NaN	NaN	1.009941	NaN	NaN	NaN	1.471995	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL1 PE=1 SV=3	TXNL1_HUMAN	TXNL1_HUMAN	Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL1 PE=1 SV=3	100.000000	0.003950	32233.400000	1.000000	2.000000	3.000000	Spectrum20411 scans:15989,	VGVKPVGSDPDFQPELSGAGSR	V[+28]GVKPVGSDPDFQPELSGAGSR	M	L	99.700000	53.200000	54.600000	41.400000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2264.200000	3.000000	-0.001100	-0.480000	2.000000	23.000000	42.805267	17.777467	0.411367	87.686450	46.195050	0.516350	NaN	NaN	NaN	53.795735	25.791856	0.715296	102.005468	62.726662	0.771881	NaN	NaN	NaN	77.900601	44.259259	0.000000	0.000000	0.000000	0.000000	0.212623	0.080829	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL1 PE=1 SV=3	TXNL1_HUMAN	TXNL1_HUMAN	Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL1 PE=1 SV=3	100.000000	0.003950	32233.400000	1.000000	2.000000	3.000000	Spectrum20410 scans:15982,	VGVKPVGSDPDFQPELSGAGSR	V[+28]GVKPVGSDPDFQPELSGAGSR	M	L	99.700000	58.400000	54.100000	44.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2272.180000	3.000000	-0.000240	-0.110000	2.000000	23.000000	42.805267	17.777467	0.411367	87.686450	46.195050	0.516350	NaN	NaN	NaN	53.795735	25.791856	0.715296	102.005468	62.726662	0.771881	NaN	NaN	NaN	77.900601	44.259259	0.000000	0.000000	0.000000	0.000000	0.205083	0.080801	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1	SYQ_HUMAN	SYQ_HUMAN	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1	100.000000	0.005270	87781.900000	4.000000	4.000000	4.000000	Spectrum7130 scans:27865,	VGVTVAQTTMEPH	V[+28]GVTVAQTTMEPH	R	L	98.800000	52.300000	49.300000	38.700000	Dimethyl (+28)	1396.700000	2.000000	0.000200	0.140000	539.000000	551.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	HNRPF_HUMAN	HNRPF_HUMAN	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	100.000000	0.025000	45653.800000	3.000000	8.000000	19.000000	Spectrum5950 scans:25029,	VHIEIGPDGR	V[+28]HIEIGPDGR	R	V	99.200000	34.600000	49.000000	28.000000	Dimethyl (+28)	1119.600000	3.000000	-0.000950	-0.850000	317.000000	326.000000	0.498933	0.211200	0.443100	NaN	27.985600	0.201200	NaN	4.193600	NaN	0.627037	0.306413	0.770475	NaN	38.000679	0.300770	NaN	1.786014	NaN	0.627037	13.364369	NaN	0.313031	NaN	1.000000	1.000000	0.005482	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	HNRPF_HUMAN	HNRPF_HUMAN	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	100.000000	0.025000	45653.800000	3.000000	8.000000	19.000000	Spectrum18634 scans:10926,	VHIEIGPDGR	V[+28]HIEIGPDGR	R	V	99.700000	48.400000	49.400000	20.200000	Dimethyl (+28), Label:13C(6) (+6)	1125.620000	3.000000	-0.000380	-0.330000	317.000000	326.000000	0.498933	0.211200	0.443100	NaN	27.985600	0.201200	NaN	4.193600	NaN	0.627037	0.306413	0.770475	NaN	38.000679	0.300770	NaN	1.786014	NaN	0.627037	13.364369	NaN	0.313031	NaN	1.000000	1.000000	0.005446	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform CSBP1 of Mitogen-activated protein kinase 14 OS=Homo sapiens GN=MAPK14	sp|Q16539|MK14_HUMAN	MK14_HUMAN	Mitogen-activated protein kinase 14 OS=Homo sapiens GN=MAPK14 PE=1 SV=3	100.000000	0.002310	41276.700000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.42554.42554.2 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42554"	VIGLLDVFTPAR	V[+28]IGLLDVFTPAR	N	S	99.600000	63.800000	54.200000	49.200000	Dimethyl (+28), Label:13C(6) (+6)	1333.810000	2.000000	-0.001400	-1.000000	83.000000	94.000000	4.464500	0.533900	0.055100	NaN	NaN	NaN	NaN	NaN	NaN	5.610783	0.774591	0.095809	NaN	NaN	NaN	NaN	NaN	NaN	5.610783	0.774591	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1	EIF3F_HUMAN	EIF3F_HUMAN	Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1	100.000000	0.002630	37545.500000	2.000000	2.000000	2.000000	Spectrum20758 scans:17897,	VIGLSSDLQQVGGASAR	V[+28]IGLSSDLQQVGGASAR	R	I	99.300000	37.200000	52.300000	18.300000	Dimethyl (+28)	1684.910000	3.000000	0.000250	0.150000	262.000000	278.000000	NaN	5.693633	NaN	1.268000	NaN	NaN	NaN	NaN	NaN	NaN	8.260422	NaN	1.475062	NaN	NaN	NaN	NaN	NaN	1.475062	8.260422	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1	EIF3F_HUMAN	EIF3F_HUMAN	Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1	100.000000	0.002630	37545.500000	2.000000	2.000000	2.000000	Spectrum20415 scans:16000,	VIGTLLGTVDKH	V[+28]IGTLLGTVDKH	R	S	99.700000	50.700000	49.400000	38.700000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1315.800000	3.000000	0.000550	0.420000	116.000000	127.000000	0.780033	0.252367	0.368567	0.404550	0.285800	2.087950	NaN	NaN	NaN	0.980311	0.366138	0.640874	0.470612	0.388078	3.121235	NaN	NaN	NaN	0.725462	0.377108	0.215067	0.018514	1.000000	0.162641	0.188690	0.079660	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Adenosylhomocysteinase OS=Homo sapiens GN=AHCY PE=1 SV=4	SAHH_HUMAN	SAHH_HUMAN	Adenosylhomocysteinase OS=Homo sapiens GN=AHCY PE=1 SV=4	100.000000	0.003950	47699.100000	2.000000	2.000000	3.000000	Spectrum70575 scans:45825,	VIITEIDPINALQAA	V[+28]IITEIDPINALQAA	R	M	99.200000	57.500000	52.000000	40.700000	Dimethyl (+28)	1607.910000	2.000000	-0.001700	-1.100000	239.000000	253.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1	SYQ_HUMAN	SYQ_HUMAN	Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1	100.000000	0.005270	87781.900000	4.000000	4.000000	4.000000	Spectrum9378 scans:34099,	VIITNFPAAK	V[+28]IITNFPAAK	R	S	98.900000	51.500000	47.800000	27.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1136.700000	2.000000	-0.001500	-1.300000	577.000000	586.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1	RAGP1_HUMAN	RAGP1_HUMAN	Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1	100.000000	0.005010	63525.300000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.31909.31909.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31909"	VIKEIEDFDSLEALR	V[+28]IKEIEDFDSLEALR	D	L	99.300000	73.600000	57.500000	63.800000	Dimethyl (+28), Dimethyl (+28)	1831.990000	3.000000	0.000430	0.240000	41.000000	55.000000	0.287967	3.672500	14.282000	3.864650	3.942600	1.042600	NaN	NaN	NaN	0.361904	5.328127	24.833942	4.495739	5.353520	1.558562	NaN	NaN	NaN	2.428821	5.340823	0.448863	0.001513	1.000000	0.012504	0.180026	0.079578	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.040800	82573.600000	11.000000	21.000000	31.000000	Spectrum42079 scans:12445,	VILGSEAAQQHPEEVR	V[+28]ILGSEAAQQHPEEVR	R	G	99.700000	118.000000	52.600000	114.000000	Dimethyl (+28), Label:13C(6) (+6)	1795.950000	3.000000	-0.000630	-0.350000	126.000000	141.000000	0.558967	0.279533	0.499233	NaN	0.028900	NaN	NaN	NaN	NaN	0.702484	0.405552	0.868081	NaN	0.039242	NaN	NaN	NaN	NaN	0.702484	0.222397	NaN	0.438590	NaN	1.000000	1.000000	0.079360	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	sp|Q9NY33|DPP3_HUMAN	DPP3_HUMAN	Dipeptidyl peptidase 3 OS=Homo sapiens GN=DPP3 PE=1 SV=2	100.000000	0.040800	82573.600000	11.000000	21.000000	31.000000	Spectrum42135 scans:12507,	VILGSEAAQQHPEEVR	V[+28]ILGSEAAQQHPEEVR	R	G	99.700000	126.000000	52.200000	117.000000	Dimethyl (+28)	1789.930000	3.000000	-0.000840	-0.470000	126.000000	141.000000	0.558967	0.279533	0.499233	NaN	0.028900	NaN	NaN	NaN	NaN	0.702484	0.405552	0.868081	NaN	0.039242	NaN	NaN	NaN	NaN	0.702484	0.222397	NaN	0.438590	NaN	1.000000	1.000000	0.079332	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 1 of Cat eye syndrome critical region protein 5 OS=Homo sapiens GN=CECR5	sp|Q9BXW7-2|CECR5_HUMAN	CECR5_HUMAN	Isoform 1 of Cat eye syndrome critical region protein 5 OS=Homo sapiens GN=CECR5	100.000000	0.002630	43570.600000	2.000000	2.000000	2.000000	Spectrum51786 scans:23618,	VIPAALKAFR	NaN	R	R	99.600000	32.200000	43.100000	20.300000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1150.780000	3.000000	0.000540	0.460000	33.000000	42.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3	RS18_HUMAN	RS18_HUMAN	40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3	100.000000	0.010500	17701.300000	3.000000	5.000000	8.000000	Spectrum19617 scans:13225,	VITIMQNPR	V[+28]ITIMQNPR	R	Q	98.900000	56.600000	49.300000	35.600000	Dimethyl (+28)	1098.620000	2.000000	0.000580	0.530000	67.000000	75.000000	0.348900	0.284100	1.505867	5.054750	4.481650	0.755950	NaN	NaN	NaN	0.438482	0.412177	2.618443	5.880180	6.085478	1.130055	NaN	NaN	NaN	3.159331	3.248827	0.452615	0.456947	1.000000	1.000000	0.164767	0.079061	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Isoform 2 of Peroxisomal acyl-coenzyme A oxidase 1 OS=Homo sapiens GN=ACOX1	sp|Q15067-2|ACOX1_HUMAN	ACOX1_HUMAN	Isoform 2 of Peroxisomal acyl-coenzyme A oxidase 1 OS=Homo sapiens GN=ACOX1	99.900000	0.002310	74651.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.25021.25021.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25021"	VKELLTLIR	V[+28]KELLTLIR	R	S	98.900000	62.000000	46.800000	29.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1149.810000	3.000000	-0.000120	-0.110000	592.000000	600.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.033000	83149.600000	3.000000	6.000000	14.000000	NSco_TAILS_20150124_Protein_complex_100Kda.25151.25151.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=25151"	VKELSEALTR	V[+28]KELSEALTR	F	H	99.100000	61.300000	53.700000	40.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1218.730000	3.000000	0.000085	0.070000	631.000000	640.000000	13.459400	6.152333	0.456867	6.374500	3.020200	0.365000	NaN	NaN	NaN	16.915169	8.925912	0.794413	7.415443	4.101025	0.545631	NaN	NaN	NaN	12.165306	6.513468	0.093794	0.225817	0.473058	1.000000	0.163950	0.079007	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	SYG_HUMAN	SYG_HUMAN	Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3	100.000000	0.065900	83149.600000	5.000000	13.000000	50.000000	Spectrum41558 scans:11860,	VKELSEALTR	V[+28]KELSEALTR	F	H	99.700000	60.400000	48.200000	37.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1210.750000	3.000000	0.000075	0.062000	631.000000	640.000000	13.459400	6.152333	0.456867	6.374500	3.020200	0.365000	NaN	NaN	NaN	16.915169	8.925912	0.794413	7.415443	4.101025	0.545631	NaN	NaN	NaN	12.165306	6.513468	0.093794	0.225817	0.472371	1.000000	0.163834	0.078685	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	NUCL_HUMAN	NUCL_HUMAN	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	100.000000	0.007900	76597.900000	6.000000	6.000000	6.000000	Spectrum10722 scans:38521,	VKGLSEDTTEETLKESFDGSVR	V[+28]KGLSEDTTEETLKESFDGSVR	F	A	98.800000	31.200000	54.900000	20.000000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2536.310000	4.000000	-0.002100	-0.830000	576.000000	597.000000	1.551567	0.809133	0.417133	53.097400	3.884100	0.321550	NaN	NaN	NaN	1.949939	1.173905	0.725323	61.768097	5.274085	0.480679	NaN	NaN	NaN	31.859018	3.223995	0.377401	0.360574	1.000000	1.000000	0.163718	0.078658	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	NUCL_HUMAN	NUCL_HUMAN	Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3	100.000000	0.007900	76597.900000	6.000000	6.000000	6.000000	Spectrum23778 scans:2234,	VKLAKAGK	NaN	M	N	99.000000	26.200000	32.000000	17.800000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32)	937.740000	3.000000	-0.000980	-1.000000	2.000000	9.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=4 SV=1	E9PLB0_HUMAN	E9PLB0_HUMAN	RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=4 SV=1	98.900000	0.005010	16246.600000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.24655.24655.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24655"	VKLFIGNLPR	V[+28]KLFIGNLPR	M	E	99.700000	86.000000	51.500000	66.200000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1229.800000	3.000000	0.000110	0.093000	2.000000	11.000000	6.994333	2.831500	1.352567	21.400100	4.122000	0.187500	NaN	NaN	NaN	8.790164	4.107989	2.351881	24.894692	5.597121	0.280290	NaN	NaN	NaN	16.842428	4.852555	0.040933	0.096926	0.202623	0.649290	0.162567	0.078498	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=4 SV=1	D6R9K7_HUMAN	D6R9K7_HUMAN	RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=4 SV=1	98.900000	0.005010	17004.300000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.24679.24679.3 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=24679"	VKLFIGNLPR	V[+28]KLFIGNLPR	M	E	99.400000	70.400000	52.000000	54.200000	Dimethyl (+28), Dimethyl (+28)	1211.780000	3.000000	-0.000570	-0.470000	2.000000	11.000000	6.994333	2.831500	1.352567	21.400100	4.122000	0.187500	NaN	NaN	NaN	8.790164	4.107989	2.351881	24.894692	5.597121	0.280290	NaN	NaN	NaN	16.842428	4.852555	0.040933	0.096926	0.202334	0.648039	0.161885	0.078418	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Interleukin enhancer-binding factor 2 OS=Homo sapiens GN=ILF2 PE=1 SV=2	ILF2_HUMAN	ILF2_HUMAN	Interleukin enhancer-binding factor 2 OS=Homo sapiens GN=ILF2 PE=1 SV=2	100.000000	0.002630	43044.700000	2.000000	2.000000	2.000000	Spectrum9897 scans:35785,	VKPAPDETSFSEALLKR	NaN	R	N	99.300000	29.200000	52.300000	14.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1985.170000	4.000000	-0.000480	-0.240000	44.000000	60.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	TBCB_HUMAN	TBCB_HUMAN	Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2	100.000000	0.007900	27307.500000	4.000000	6.000000	6.000000	Spectrum65825 scans:40095,	VKPAVVTVGDFPEEDYGLDEI	V[+28]KPAVVTVGDFPEEDYGLDEI	F	-	99.500000	64.500000	53.800000	64.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	2355.200000	2.000000	-0.000460	-0.190000	224.000000	244.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369|FLNB_HUMAN	FLNB_HUMAN	Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2	100.000000	0.092200	278140.800000	5.000000	7.000000	7.000000	Nsco_Tails_biological_replicate_3_fraction2A.6124.6124.3 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=6124"	VKVEPAVDTSR	V[+28]KVEPAVDTSR	R	I	99.500000	72.200000	54.500000	51.800000	Dimethyl (+28), Dimethyl (+28)	1255.710000	3.000000	0.000280	0.220000	1220.000000	1230.000000	6.779733	3.252267	0.421333	28.729550	0.903650	NaN	NaN	NaN	NaN	8.520464	4.718445	0.732626	33.421027	1.227035	NaN	NaN	NaN	NaN	20.970745	2.972740	0.050750	0.338034	0.246640	1.000000	0.159871	0.077838	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369|FLNB_HUMAN	FLNB_HUMAN	Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2	100.000000	0.018400	278140.800000	8.000000	12.000000	14.000000	Spectrum16270 scans:6092,	VKVEPAVDTSR	V[+28]KVEPAVDTSR	R	I	99.700000	47.200000	49.500000	21.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1265.760000	3.000000	-0.000270	-0.220000	1220.000000	1230.000000	6.779733	3.252267	0.421333	28.729550	0.903650	NaN	NaN	NaN	NaN	8.520464	4.718445	0.732626	33.421027	1.227035	NaN	NaN	NaN	NaN	20.970745	2.972740	0.050750	0.338034	0.246295	1.000000	0.158665	0.077759	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Small nuclear ribonucleoprotein polypeptide A', isoform CRA_a OS=Homo sapiens GN=SNRPA1 PE=4 SV=1	H0YKK0_HUMAN	H0YKK0_HUMAN	Small nuclear ribonucleoprotein polypeptide A', isoform CRA_a OS=Homo sapiens GN=SNRPA1 PE=4 SV=1	95.700000	0.001320	17655.800000	1.000000	1.000000	1.000000	Spectrum18770 scans:11239,	VLDFQKVK	V[+28]LDFQKVK	R	L	99.000000	32.000000	45.900000	23.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1075.700000	3.000000	-0.000053	-0.050000	144.000000	151.000000	2.124867	1.110500	0.452767	0.609200	0.529500	1.776700	NaN	NaN	NaN	2.670437	1.611133	0.787283	0.708681	0.718990	2.655953	NaN	NaN	NaN	1.689559	1.165061	0.334860	0.232784	1.000000	1.000000	0.157049	0.077733	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=2 SV=1	SYSC_HUMAN	SYSC_HUMAN	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3	100.000000	0.008640	58760.600000	2.000000	3.000000	3.000000	Nsco_Tails_biological_replicate1_apoptosis.35571.35571.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=35571"	VLDLDLFR	V[+28]LDLDLFR	M	V	98.600000	53.000000	52.900000	30.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1027.590000	2.000000	0.000120	0.120000	2.000000	9.000000	0.568433	0.289933	0.512567	0.858450	0.514150	0.603100	NaN	NaN	8.953186	0.714381	0.420640	0.891265	0.998633	0.698147	0.901562	NaN	NaN	4.290390	0.856507	0.559393	0.104685	0.154785	0.506633	0.981906	0.155675	0.077629	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=2 SV=1	SYSC_HUMAN	SYSC_HUMAN	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=1 SV=3	100.000000	0.009220	58760.600000	3.000000	7.000000	7.000000	Spectrum63905 scans:37956,	VLDLDLFR	V[+28]LDLDLFR	M	V	99.000000	58.300000	47.900000	29.900000	Dimethyl (+28), Label:13C(6) (+6)	1023.610000	2.000000	0.000230	0.220000	2.000000	9.000000	0.568433	0.289933	0.512567	0.858450	0.514150	0.603100	NaN	NaN	8.953186	0.714381	0.420640	0.891265	0.998633	0.698147	0.901562	NaN	NaN	4.290390	0.856507	0.559393	0.104685	0.154785	0.496251	0.978329	0.155153	0.077603	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction5A (Nsco_Tails_biological_replicate_3_fraction5A_127087)	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=2 SV=1	Q5T5C7_HUMAN	Q5T5C7_HUMAN	Serine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=SARS PE=2 SV=1	100.000000	0.043100	61296.800000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate_3_fraction5A.26456.26456.2 File:"Nsco_Tails_biological_replicate_3_fraction5A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26456"	VLDLDLFR	V[+28]LDLDLFR	M	V	99.000000	58.700000	52.400000	35.700000	Dimethyl (+28)	1017.590000	2.000000	0.000140	0.140000	2.000000	9.000000	0.568433	0.289933	0.512567	0.858450	0.514150	0.603100	NaN	NaN	8.953186	0.714381	0.420640	0.891265	0.998633	0.698147	0.901562	NaN	NaN	4.290390	0.856507	0.559393	0.104685	0.154785	0.495574	0.976550	0.155049	0.077395	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	TKT_HUMAN	TKT_HUMAN	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	100.000000	0.006590	67861.400000	3.000000	5.000000	5.000000	Spectrum58443 scans:31357,	VLDPFTIKPLDR	V[+28]LDPFTIKPLDR	R	K	98.900000	32.500000	50.400000	20.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1486.890000	3.000000	0.000110	0.071000	531.000000	542.000000	NaN	NaN	0.448833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.780444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	TKT_HUMAN	TKT_HUMAN	Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3	100.000000	0.006590	67861.400000	3.000000	5.000000	5.000000	Spectrum58453 scans:31371,	VLDPFTIKPLDR	V[+28]LDPFTIKPLDR	R	K	99.700000	52.500000	49.400000	22.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1478.910000	3.000000	-0.000025	-0.017000	531.000000	542.000000	NaN	NaN	0.448833	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	0.780444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.017300	73663.300000	4.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.4619.4619.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=4619"	VLENAEGAR	V[+28]LENAEGAR	K	T	99.600000	60.000000	51.400000	17.400000	Dimethyl (+28)	985.520000	2.000000	0.000330	0.330000	77.000000	85.000000	0.791633	0.609533	0.620400	1.006750	3.036550	4.668100	NaN	NaN	NaN	0.994889	0.884322	1.078769	1.171150	4.123226	6.978249	NaN	NaN	NaN	1.083020	2.503774	0.051691	0.365500	0.241085	1.000000	0.154222	0.077111	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	GRP75_HUMAN	GRP75_HUMAN	Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2	100.000000	0.060600	73663.300000	17.000000	36.000000	46.000000	Spectrum35103 scans:4381,	VLENAEGAR	V[+28]LENAEGAR	K	T	99.600000	60.200000	47.800000	29.300000	Label:13C(6) (+6)	963.510000	2.000000	-0.000310	-0.320000	77.000000	85.000000	0.791633	0.609533	0.620400	1.006750	3.036550	4.668100	NaN	NaN	NaN	0.994889	0.884322	1.078769	1.171150	4.123226	6.978249	NaN	NaN	NaN	1.083020	2.503774	0.051691	0.365500	0.240762	1.000000	0.144855	0.077085	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C	sp|Q709C8-2|VP13C_HUMAN	VP13C_HUMAN	Isoform 2 of Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C	97.700000	0.008960	408186.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.31310.31310.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31310"	VLESVVADLLNR	V[+28]LESVVADLLNR	M	F	98.800000	52.900000	55.100000	33.300000	Dimethyl (+28)	1354.780000	2.000000	-0.001300	-0.980000	2.000000	13.000000	2.248200	5.383600	6.997067	0.427300	0.436300	1.021150	NaN	NaN	NaN	2.825437	7.810620	12.166696	0.497077	0.592437	1.526497	NaN	NaN	NaN	1.661257	4.201528	0.389134	0.451805	1.000000	1.000000	0.143240	0.077060	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Isoform 2 of Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C	sp|Q709C8-2|VP13C_HUMAN	VP13C_HUMAN	Isoform 2 of Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C	97.700000	0.008960	408186.700000	1.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.31332.31332.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=31332"	VLESVVADLLNR	V[+28]LESVVADLLNR	M	F	99.400000	59.300000	54.800000	45.300000	Dimethyl (+28), Label:13C(6) (+6)	1360.800000	2.000000	-0.000093	-0.068000	2.000000	13.000000	2.248200	5.383600	6.997067	0.427300	0.436300	1.021150	NaN	NaN	NaN	2.825437	7.810620	12.166696	0.497077	0.592437	1.526497	NaN	NaN	NaN	1.661257	4.201528	0.389134	0.451805	1.000000	1.000000	0.141835	0.077034	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.054000	37523.700000	7.000000	15.000000	41.000000	Spectrum58124 scans:30974,	VLFGAEILKKIPGR	V[+28]LFGAEILKKIPGR	F	V	99.700000	29.600000	42.900000	27.500000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1638.110000	4.000000	-0.000760	-0.460000	89.000000	102.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction2A (Nsco_Tails_biological_replicate_3_fraction2A_127090)	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	PYR1_HUMAN	PYR1_HUMAN	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	100.000000	0.119000	242964.500000	4.000000	8.000000	9.000000	Nsco_Tails_biological_replicate_3_fraction2A.12414.12414.2 File:"Nsco_Tails_biological_replicate_3_fraction2A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12414"	VLGTSPEAIDSAENR	V[+28]LGTSPEAIDSAENR	R	F	99.700000	118.000000	54.200000	107.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1595.800000	2.000000	-0.000470	-0.290000	1034.000000	1048.000000	0.857267	1.537000	NaN	NaN	1.072700	NaN	NaN	NaN	NaN	1.077374	2.229906	NaN	NaN	1.456582	NaN	NaN	NaN	NaN	1.077374	1.843244	NaN	0.131637	NaN	0.741524	1.000000	0.075723	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	PYR1_HUMAN	PYR1_HUMAN	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	100.000000	0.021100	242964.500000	6.000000	12.000000	16.000000	Spectrum19333 scans:12409,	VLGTSPEAIDSAENR	V[+28]LGTSPEAIDSAENR	R	F	99.700000	110.000000	50.000000	97.000000	Dimethyl (+28)	1585.790000	2.000000	-0.000220	-0.140000	1034.000000	1048.000000	0.857267	1.537000	NaN	NaN	1.072700	NaN	NaN	NaN	NaN	1.077374	2.229906	NaN	NaN	1.456582	NaN	NaN	NaN	NaN	1.077374	1.843244	NaN	0.131637	NaN	0.728515	1.000000	0.075698	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH	sp|O60701-2|UGDH_HUMAN	UGDH_HUMAN	Isoform 2 of UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH	95.000000	0.001320	47585.600000	1.000000	1.000000	1.000000	Spectrum42883 scans:13354,	VLIGGDETPEGQR	V[+28]LIGGDETPEGQR	R	A	98.800000	57.500000	50.300000	44.500000	Dimethyl (+28), Label:13C(6) (+6)	1403.730000	2.000000	-0.003000	-2.100000	111.000000	123.000000	NaN	NaN	NaN	2.095750	11.284800	7.524100	NaN	NaN	NaN	NaN	NaN	NaN	2.437982	15.323240	11.247627	NaN	NaN	NaN	2.437982	15.323240	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Actin-related protein 2 OS=Homo sapiens GN=ACTR2 PE=1 SV=1	ARP2_HUMAN	ARP2_HUMAN	Actin-related protein 2 OS=Homo sapiens GN=ACTR2 PE=1 SV=1	100.000000	0.002630	44743.700000	2.000000	2.000000	2.000000	Spectrum38205 scans:7959,	VLKGDVEKLSK	NaN	R	F	98.800000	27.100000	45.500000	18.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1350.890000	3.000000	0.000120	0.088000	329.000000	339.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Cytoplasmic aconitate hydratase OS=Homo sapiens GN=ACO1 PE=1 SV=3	ACOC_HUMAN	ACOC_HUMAN	Cytoplasmic aconitate hydratase OS=Homo sapiens GN=ACO1 PE=1 SV=3	100.000000	0.003950	98383.000000	2.000000	3.000000	3.000000	Spectrum48979 scans:20385,	VLLEAAIR	V[+28]LLEAAIR	R	N	98.600000	46.000000	45.500000	20.000000	Dimethyl (+28), Label:13C(6) (+6)	917.600000	2.000000	-0.000230	-0.250000	41.000000	48.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14 PE=1 SV=2	SRP14_HUMAN	SRP14_HUMAN	Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14 PE=1 SV=2	100.000000	0.007900	14552.600000	2.000000	6.000000	6.000000	Spectrum32145 scans:26205,	VLLESEQFL	V[+28]LLESEQFL	M	T	98.500000	50.700000	49.300000	34.500000	Dimethyl (+28)	1104.610000	2.000000	0.000260	0.230000	2.000000	10.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14 PE=1 SV=2	SRP14_HUMAN	SRP14_HUMAN	Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14 PE=1 SV=2	100.000000	0.017300	14552.600000	1.000000	2.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.39708.39708.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39708"	VLLESEQFLTELTR	V[+28]LLESEQFLTELTR	M	L	99.700000	90.600000	57.000000	74.700000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1714.940000	2.000000	-0.001200	-0.700000	2.000000	15.000000	0.539000	0.184400	0.343067	0.921650	0.385800	0.418550	NaN	NaN	NaN	0.677391	0.267531	0.596534	1.072154	0.523864	0.625682	NaN	NaN	NaN	0.874772	0.395698	0.141279	0.199413	0.631751	0.985704	0.138523	0.075059	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14 PE=1 SV=2	SRP14_HUMAN	SRP14_HUMAN	Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14 PE=1 SV=2	100.000000	0.017300	14552.600000	1.000000	2.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.39705.39705.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39705"	VLLESEQFLTELTR	V[+28]LLESEQFLTELTR	M	L	99.700000	115.000000	56.900000	101.000000	Dimethyl (+28)	1704.930000	2.000000	-0.001400	-0.810000	2.000000	15.000000	0.539000	0.184400	0.343067	0.921650	0.385800	0.418550	NaN	NaN	NaN	0.677391	0.267531	0.596534	1.072154	0.523864	0.625682	NaN	NaN	NaN	0.874772	0.395698	0.141279	0.199413	0.622131	0.984302	0.138440	0.075035	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14 PE=1 SV=2	SRP14_HUMAN	SRP14_HUMAN	Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14 PE=1 SV=2	100.000000	0.007900	14552.600000	2.000000	6.000000	6.000000	Spectrum68055 scans:42673,	VLLESEQFLTELTR	V[+28]LLESEQFLTELTR	M	L	99.700000	49.700000	52.500000	31.300000	Dimethyl (+28), Label:13C(6) (+6)	1710.950000	3.000000	0.001100	0.640000	2.000000	15.000000	0.539000	0.184400	0.343067	0.921650	0.385800	0.418550	NaN	NaN	NaN	0.677391	0.267531	0.596534	1.072154	0.523864	0.625682	NaN	NaN	NaN	0.874772	0.395698	0.141279	0.199413	0.621342	0.982904	0.136965	0.075011	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	RS11_HUMAN	RS11_HUMAN	40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3	100.000000	0.015800	18413.300000	4.000000	11.000000	12.000000	Spectrum18392 scans:10359,	VLLGETGKEKLPR	V[+28]LLGETGKEKLPR	R	Y	99.700000	31.600000	45.600000	22.700000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1537.020000	4.000000	-0.000099	-0.064000	23.000000	35.000000	368.084933	0.473767	0.056400	7813.113000	4.071600	0.000300	NaN	NaN	0.043857	462.592602	0.687349	0.098070	9088.978334	5.528685	0.000448	NaN	NaN	0.021016	4775.785468	3.108017	0.000000	0.421257	0.000000	1.000000	0.136884	0.074986	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	B1AHC9_HUMAN	B1AHC9_HUMAN	X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1	100.000000	0.034200	64268.600000	8.000000	18.000000	26.000000	Spectrum17427 scans:8275,	VLQELDNPGAKR	V[+28]LQELDNPGAKR	Y	I	99.700000	48.100000	51.000000	32.500000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1412.810000	3.000000	-0.000570	-0.410000	54.000000	65.000000	1.473233	NaN	17.824467	12.755800	NaN	NaN	NaN	NaN	NaN	1.851493	NaN	30.993682	14.838796	NaN	NaN	NaN	NaN	NaN	8.345145	NaN	0.383450	NaN	1.000000	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Purine nucleoside phosphorylase OS=Homo sapiens GN=PNP PE=1 SV=2	PNPH_HUMAN	PNPH_HUMAN	Purine nucleoside phosphorylase OS=Homo sapiens GN=PNP PE=1 SV=2	100.000000	0.007900	32100.000000	3.000000	5.000000	6.000000	Spectrum58579 scans:31555,	VLQKLGADAVGMSTVPEVIVAR	V[+28]LQKLGADAVGM[+16]STVPEVIVAR	R	H	99.700000	55.400000	54.100000	47.100000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2326.340000	3.000000	-0.001100	-0.460000	208.000000	229.000000	0.607400	NaN	0.142900	NaN	NaN	NaN	NaN	NaN	NaN	0.763353	NaN	0.248479	NaN	NaN	NaN	NaN	NaN	NaN	0.763353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	FPPS_HUMAN	FPPS_HUMAN	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	100.000000	0.027700	48258.700000	3.000000	12.000000	21.000000	Spectrum50751 scans:22404,	VLTEDEMGHPEIGDAIAR	V[+28]LTEDEMGHPEIGDAIAR	R	L	99.700000	49.800000	51.200000	47.600000	Dimethyl (+28), Label:13C(6) (+6)	1985.980000	3.000000	-0.001600	-0.800000	93.000000	110.000000	0.483967	0.248433	0.528667	0.859250	0.322650	0.410100	NaN	NaN	NaN	0.608228	0.360431	0.919260	0.999564	0.438115	0.613050	NaN	NaN	NaN	0.803896	0.399273	0.151998	0.061737	0.602779	0.298784	0.128805	0.074648	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	FPPS_HUMAN	FPPS_HUMAN	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	100.000000	0.027700	48258.700000	3.000000	12.000000	21.000000	Spectrum46773 scans:17851,	VLTEDEMGHPEIGDAIAR	V[+28]LTEDEMGHPEIGDAIAR	R	L	99.700000	62.800000	50.700000	48.800000	Dimethyl (+28), Oxidation (+16), Label:13C(6) (+6)	2001.980000	3.000000	0.000130	0.064000	93.000000	110.000000	0.483967	0.248433	0.528667	0.859250	0.322650	0.410100	NaN	NaN	NaN	0.608228	0.360431	0.919260	0.999564	0.438115	0.613050	NaN	NaN	NaN	0.803896	0.399273	0.151998	0.061737	0.602091	0.288717	0.122984	0.074624	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	FPPS_HUMAN	FPPS_HUMAN	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	100.000000	0.027700	48258.700000	3.000000	12.000000	21.000000	Spectrum50777 scans:22432,	VLTEDEMGHPEIGDAIAR	V[+28]LTEDEMGHPEIGDAIAR	R	L	99.700000	68.100000	50.400000	58.700000	Dimethyl (+28)	1979.960000	3.000000	-0.000690	-0.350000	93.000000	110.000000	0.483967	0.248433	0.528667	0.859250	0.322650	0.410100	NaN	NaN	NaN	0.608228	0.360431	0.919260	0.999564	0.438115	0.613050	NaN	NaN	NaN	0.803896	0.399273	0.151998	0.061737	0.601404	0.288328	0.122919	0.074600	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	FPPS_HUMAN	FPPS_HUMAN	Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4	100.000000	0.027700	48258.700000	3.000000	12.000000	21.000000	Spectrum50760 scans:22414,	VLTEDEMGHPEIGDAIAR	V[+28]LTEDEMGHPEIGDAIAR	R	L	99.700000	79.300000	49.700000	65.000000	Dimethyl (+28), Oxidation (+16)	1995.960000	3.000000	-0.001700	-0.850000	93.000000	110.000000	0.483967	0.248433	0.528667	0.859250	0.322650	0.410100	NaN	NaN	NaN	0.608228	0.360431	0.919260	0.999564	0.438115	0.613050	NaN	NaN	NaN	0.803896	0.399273	0.151998	0.061737	0.600719	0.287941	0.122399	0.074456	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2	P20D2_HUMAN	P20D2_HUMAN	Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2	100.000000	0.006590	47758.700000	3.000000	5.000000	5.000000	Spectrum47346 scans:18521,	VLTHFFER	V[+28]LTHFFER	R	E	99.000000	43.500000	49.200000	28.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1085.590000	3.000000	0.000440	0.410000	61.000000	68.000000	NaN	6.271733	NaN	NaN	89.930350	0.344150	NaN	NaN	NaN	NaN	9.099139	NaN	NaN	122.113314	0.514463	NaN	NaN	NaN	NaN	65.606227	NaN	0.030006	NaN	0.136999	NaN	0.074408	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2	P20D2_HUMAN	P20D2_HUMAN	Peptidase M20 domain-containing protein 2 OS=Homo sapiens GN=PM20D2 PE=1 SV=2	100.000000	0.006590	47758.700000	3.000000	5.000000	5.000000	Spectrum47332 scans:18506,	VLTHFFER	V[+28]LTHFFER	R	E	99.000000	44.800000	49.100000	29.100000	Dimethyl (+28), Label:13C(6) (+6)	1081.600000	3.000000	0.000083	0.077000	61.000000	68.000000	NaN	6.271733	NaN	NaN	89.930350	0.344150	NaN	NaN	NaN	NaN	9.099139	NaN	NaN	122.113314	0.514463	NaN	NaN	NaN	NaN	65.606227	NaN	0.030006	NaN	0.136819	NaN	0.074336	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Uridine-cytidine kinase 2 OS=Homo sapiens GN=UCK2 PE=1 SV=1	sp|Q9BZX2|UCK2_HUMAN	UCK2_HUMAN	Uridine-cytidine kinase 2 OS=Homo sapiens GN=UCK2 PE=1 SV=1	100.000000	0.002630	29281.400000	2.000000	2.000000	2.000000	Spectrum33352 scans:2416,	VLTSEQKAK	V[+28]LTSEQKAK	R	A	99.700000	49.700000	47.400000	32.600000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36)	1102.690000	3.000000	0.000240	0.210000	67.000000	75.000000	0.230200	0.410900	1.469400	1.535600	0.470150	NaN	NaN	NaN	NaN	0.289305	0.596141	2.555034	1.786360	0.638400	NaN	NaN	NaN	NaN	1.037833	0.617271	0.397785	0.021784	1.000000	0.098809	0.118511	0.074169	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	S-adenosylmethionine synthase isoform type-2 OS=Homo sapiens GN=MAT2A PE=1 SV=1	METK2_HUMAN	METK2_HUMAN	S-adenosylmethionine synthase isoform type-2 OS=Homo sapiens GN=MAT2A PE=1 SV=1	100.000000	0.002630	43642.800000	1.000000	2.000000	2.000000	Spectrum56203 scans:28636,	VLVALEQQSPDIAQGVHLDR	V[+28]LVALEQQSPDIAQGVHLDR	N	N	99.700000	61.000000	54.600000	49.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2225.210000	3.000000	0.000640	0.290000	106.000000	125.000000	0.679933	1.308667	2.175567	NaN	NaN	NaN	NaN	NaN	NaN	0.854510	1.898636	3.782936	NaN	NaN	NaN	NaN	NaN	NaN	0.854510	1.898636	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	S-adenosylmethionine synthase isoform type-2 OS=Homo sapiens GN=MAT2A PE=1 SV=1	METK2_HUMAN	METK2_HUMAN	S-adenosylmethionine synthase isoform type-2 OS=Homo sapiens GN=MAT2A PE=1 SV=1	99.900000	0.002310	43642.800000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate_3_fraction6A.28632.28632.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=28632"	VLVALEQQSPDIAQGVHLDR	V[+28]LVALEQQSPDIAQGVHLDR	N	N	98.500000	79.500000	59.500000	75.300000	Dimethyl (+28)	2215.210000	3.000000	0.012000	5.300000	106.000000	125.000000	0.679933	1.308667	2.175567	NaN	NaN	NaN	NaN	NaN	NaN	0.854510	1.898636	3.782936	NaN	NaN	NaN	NaN	NaN	NaN	0.854510	1.898636	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	SPEE_HUMAN	SPEE_HUMAN	Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1	100.000000	0.054000	33806.500000	4.000000	9.000000	41.000000	Spectrum57172 scans:29828,	VLVLDGVIQCTER	V[+28]LVLDGVIQC[+57]TER	N	D	99.600000	64.100000	51.500000	55.500000	Dimethyl (+28), Carbamidomethyl (+57)	1528.830000	2.000000	-0.000430	-0.280000	62.000000	74.000000	4.061533	1.046067	0.281000	9.988800	8.152350	1.533050	NaN	NaN	NaN	5.104353	1.517652	0.488611	11.619951	11.069794	2.291726	NaN	NaN	NaN	8.362152	6.293723	0.199540	0.404115	0.727316	1.000000	0.106753	0.073486	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	sp|Q13263|TIF1B_HUMAN	TIF1B_HUMAN	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	100.000000	0.007900	88531.000000	4.000000	6.000000	6.000000	Spectrum17750 scans:8898,	VLVNDAQKVTEGQQER	V[+28]LVNDAQKVTEGQQER	R	L	99.700000	44.100000	53.200000	36.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1887.020000	3.000000	-0.000520	-0.280000	312.000000	327.000000	20.455967	6.454033	0.471567	NaN	NaN	NaN	NaN	NaN	NaN	25.708140	9.363623	0.819973	NaN	NaN	NaN	NaN	NaN	NaN	25.708140	9.363623	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	sp|Q13263|TIF1B_HUMAN	TIF1B_HUMAN	Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28 PE=1 SV=5	100.000000	0.007900	88531.000000	4.000000	6.000000	6.000000	Spectrum17751 scans:8899,	VLVNDAQKVTEGQQER	V[+28]LVNDAQKVTEGQQER	R	L	99.700000	47.500000	53.300000	38.300000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1879.040000	3.000000	-0.001200	-0.640000	312.000000	327.000000	20.455967	6.454033	0.471567	NaN	NaN	NaN	NaN	NaN	NaN	25.708140	9.363623	0.819973	NaN	NaN	NaN	NaN	NaN	NaN	25.708140	9.363623	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	PPCE_HUMAN	PPCE_HUMAN	Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2	100.000000	0.005760	80683.500000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate1_apoptosis.20887.20887.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=20887"	VLYVQDSLEGEAR	V[+28]LYVQDSLEGEAR	R	V	99.700000	80.500000	54.300000	58.300000	Dimethyl (+28)	1505.770000	2.000000	-0.001000	-0.690000	99.000000	111.000000	1.327800	0.095433	0.121100	3.093350	81.138200	12.199300	NaN	NaN	NaN	1.668719	0.138456	0.210572	3.598488	110.174757	18.236490	NaN	NaN	NaN	2.633604	55.156607	0.223573	0.491186	0.675193	1.000000	0.097077	0.072496	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Nucleoside diphosphate kinase OS=Homo sapiens GN=NME1-NME2 PE=2 SV=1	sp|P22392-2|NDKB_HUMAN	NDKB_HUMAN	Isoform 3 of Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2	100.000000	0.004720	30119.300000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.30757.30757.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30757"	VMLGETNPADSKPGTIR	V[+42]MLGETNPADSKPGTIR	R	G	98.600000	60.000000	57.000000	54.700000	Dimethyl (+28), Dimethyl (+28)	1840.970000	3.000000	-0.003300	-1.800000	89.000000	105.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleoside diphosphate kinase OS=Homo sapiens GN=NME1-NME2 PE=2 SV=1	sp|P22392-2|NDKB_HUMAN	NDKB_HUMAN	Isoform 3 of Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2	100.000000	0.048700	30119.300000	6.000000	14.000000	37.000000	Spectrum44816 scans:15609,	VMLGETNPADSKPGTIR	V[+42]MLGETNPADSKPGTIR	R	G	99.700000	67.600000	53.200000	58.300000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1851.010000	3.000000	-0.003000	-1.600000	89.000000	105.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Nucleoside diphosphate kinase OS=Homo sapiens GN=NME1-NME2 PE=2 SV=1	sp|P22392-2|NDKB_HUMAN	NDKB_HUMAN	Isoform 3 of Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2	100.000000	0.048700	30119.300000	6.000000	14.000000	37.000000	Spectrum43214 scans:13745,	VMLGETNPADSKPGTIR	V[+42]MLGETNPADSKPGTIR	R	G	99.700000	85.200000	53.200000	76.300000	Dimethyl (+28), Oxidation (+16), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1867.010000	3.000000	-0.001400	-0.750000	89.000000	105.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Nucleoside diphosphate kinase OS=Homo sapiens GN=NME1-NME2 PE=2 SV=1	sp|P22392-2|NDKB_HUMAN	NDKB_HUMAN	Isoform 3 of Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2	100.000000	0.004670	30119.300000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.26393.26393.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26393"	VMLGETNPADSKPGTIR	V[+42]MLGETNPADSKPGTIR	R	G	99.700000	79.700000	57.000000	72.300000	Dimethyl (+28), Oxidation (+16), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1874.980000	3.000000	-0.011000	-6.000000	89.000000	105.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Nucleoside diphosphate kinase OS=Homo sapiens GN=NME1-NME2 PE=2 SV=1	sp|P22392-2|NDKB_HUMAN	NDKB_HUMAN	Isoform 3 of Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2	100.000000	0.004670	30119.300000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.29212.29212.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=29212"	VMLGETNPADSKPGTIR	V[+42]MLGETNPADSKPGTIR	R	G	99.700000	84.400000	57.300000	84.400000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1858.990000	3.000000	-0.006300	-3.400000	89.000000	105.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate_3_fraction6A (Nsco_Tails_biological_replicate_3_fraction6A_127086)	Nucleoside diphosphate kinase OS=Homo sapiens GN=NME1-NME2 PE=2 SV=1	sp|P22392-2|NDKB_HUMAN	NDKB_HUMAN	Isoform 3 of Nucleoside diphosphate kinase B OS=Homo sapiens GN=NME2	100.000000	0.016200	30119.300000	4.000000	6.000000	7.000000	Nsco_Tails_biological_replicate_3_fraction6A.13678.13678.3 File:"Nsco_Tails_biological_replicate_3_fraction6A.raw", NativeID:"controllerType=0 controllerNumber=1 scan=13678"	VMLGETNPADSKPGTIR	V[+42]MLGETNPADSKPGTIR	R	G	99.400000	79.900000	56.700000	70.900000	Dimethyl (+28), Oxidation (+16), Dimethyl (+28)	1856.970000	3.000000	-0.001300	-0.690000	89.000000	105.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2	PAPS1_HUMAN	PAPS1_HUMAN	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2	100.000000	0.017900	70815.200000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.33903.33903.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33903"	VNDCVQQVVELLQER	V[+28]NDC[+57]VQQVVELLQER	D	D	99.700000	73.000000	56.000000	69.800000	Dimethyl (+28), Carbamidomethyl (+57)	1855.940000	2.000000	-0.003100	-1.700000	209.000000	223.000000	0.432400	1.137700	0.359600	0.815550	0.492700	0.607400	NaN	NaN	NaN	0.543421	1.650595	0.625283	0.948728	0.669020	0.907990	NaN	NaN	NaN	0.746074	1.159808	0.168849	0.254847	0.407444	1.000000	0.096149	0.071311	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2	PAPS1_HUMAN	PAPS1_HUMAN	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2	100.000000	0.017900	70815.200000	2.000000	4.000000	4.000000	Nsco_Tails_biological_replicate2_apoptosis.33902.33902.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33902"	VNDCVQQVVELLQER	V[+28]NDC[+57]VQQVVELLQER	D	D	99.700000	79.800000	56.300000	74.800000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1865.960000	2.000000	0.001300	0.690000	209.000000	223.000000	0.432400	1.137700	0.359600	0.815550	0.492700	0.607400	NaN	NaN	NaN	0.543421	1.650595	0.625283	0.948728	0.669020	0.907990	NaN	NaN	NaN	0.746074	1.159808	0.168849	0.254847	0.403516	1.000000	0.096109	0.071245	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	PYR1_HUMAN	PYR1_HUMAN	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	100.000000	0.021100	242964.500000	6.000000	12.000000	16.000000	Spectrum19721 scans:13558,	VNEISVEVDSDPR	V[+28]NEISVEVDSDPR	R	A	99.600000	79.000000	48.700000	51.400000	Dimethyl (+28)	1485.730000	2.000000	-0.004400	-2.900000	2188.000000	2200.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	PYR1_HUMAN	PYR1_HUMAN	CAD protein OS=Homo sapiens GN=CAD PE=1 SV=3	100.000000	0.021100	242964.500000	6.000000	12.000000	16.000000	Spectrum19722 scans:13560,	VNEISVEVDSDPR	V[+28]NEISVEVDSDPR	R	A	99.700000	79.700000	49.000000	55.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1495.740000	2.000000	-0.002200	-1.400000	2188.000000	2200.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.016500	95322.100000	6.000000	7.000000	7.000000	NSco_TAILS_20150124_Protein_complex_100Kda.41439.41439.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=41439"	VNFTVDQIR	V[+28]NFTVDQIR	M	A	99.600000	64.300000	52.900000	43.600000	Dimethyl (+28)	1118.610000	2.000000	0.000026	0.024000	2.000000	10.000000	0.557267	0.258433	0.463767	0.797000	0.436650	0.548150	0.840871	0.987686	1.300129	0.700348	0.374940	0.806410	0.927148	0.592912	0.819418	0.562399	0.420646	0.623025	0.729965	0.462832	0.020566	0.019947	0.046796	0.073400	0.006422	0.004852	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum51074 scans:22763,	VNFTVDQIR	V[+28]NFTVDQIR	M	A	99.500000	64.400000	49.400000	36.000000	Dimethyl (+28), Label:13C(6) (+6)	1124.630000	2.000000	0.000410	0.360000	2.000000	10.000000	0.557267	0.258433	0.463767	0.797000	0.436650	0.548150	0.840871	0.987686	1.300129	0.700348	0.374940	0.806410	0.927148	0.592912	0.819418	0.562399	0.420646	0.623025	0.729965	0.462832	0.020566	0.019947	0.046130	0.073322	0.006420	0.004850	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum51141 scans:22845,	VNFTVDQIR	V[+28]NFTVDQIR	M	A	99.700000	69.400000	49.300000	41.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1128.620000	2.000000	-0.000190	-0.170000	2.000000	10.000000	0.557267	0.258433	0.463767	0.797000	0.436650	0.548150	0.840871	0.987686	1.300129	0.700348	0.374940	0.806410	0.927148	0.592912	0.819418	0.562399	0.420646	0.623025	0.729965	0.462832	0.020566	0.019947	0.046101	0.073244	0.006417	0.004849	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.162000	15036.300000	9.000000	26.000000	123.000000	Spectrum56318 scans:28773,	VNITPAEVGVLVGKDR	V[+28]NITPAEVGVLVGKDR	F	S	99.600000	46.500000	52.100000	32.800000	Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1711.990000	3.000000	-0.003600	-2.100000	41.000000	56.000000	8.388567	4.231667	0.521533	0.017850	NaN	NaN	NaN	NaN	NaN	10.542374	6.139375	0.906857	0.020765	NaN	NaN	NaN	NaN	NaN	5.281569	6.139375	0.498678	NaN	1.000000	NaN	0.093204	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.162000	15036.300000	9.000000	26.000000	123.000000	Spectrum57492 scans:30223,	VNITPAEVGVLVGKDR	V[+28]NITPAEVGVLVGKDR	F	S	99.700000	62.900000	50.700000	50.000000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1732.050000	3.000000	-0.000055	-0.032000	41.000000	56.000000	8.388567	4.231667	0.521533	0.017850	NaN	NaN	NaN	NaN	NaN	10.542374	6.139375	0.906857	0.020765	NaN	NaN	NaN	NaN	NaN	5.281569	6.139375	0.498678	NaN	1.000000	NaN	0.092055	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	PROF1_HUMAN	PROF1_HUMAN	Profilin-1 OS=Homo sapiens GN=PFN1 PE=1 SV=2	100.000000	0.162000	15036.300000	9.000000	26.000000	123.000000	Spectrum57512 scans:30245,	VNITPAEVGVLVGKDR	V[+28]NITPAEVGVLVGKDR	F	S	99.700000	68.000000	51.700000	55.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1740.030000	3.000000	0.000230	0.130000	41.000000	56.000000	8.388567	4.231667	0.521533	0.017850	NaN	NaN	NaN	NaN	NaN	10.542374	6.139375	0.906857	0.020765	NaN	NaN	NaN	NaN	NaN	5.281569	6.139375	0.498678	NaN	1.000000	NaN	0.091799	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=3	sp|P28062|PSB8_HUMAN	PSB8_HUMAN	Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=3	100.000000	0.002630	30336.700000	2.000000	2.000000	2.000000	Spectrum20485 scans:16308,	VNKVIEINPY	V[+28]NKVIEINPY	R	L	98.600000	61.200000	50.000000	44.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36)	1251.730000	2.000000	-0.003500	-2.800000	103.000000	112.000000	4.754133	24.597733	6.260733	NaN	NaN	NaN	NaN	NaN	NaN	5.974781	35.686817	10.886339	NaN	NaN	NaN	NaN	NaN	NaN	5.974781	35.686817	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Spermine synthase OS=Homo sapiens GN=SMS PE=1 SV=2	sp|P52788|SPSY_HUMAN	SPSY_HUMAN	Spermine synthase OS=Homo sapiens GN=SMS PE=1 SV=2	99.900000	0.004480	41251.500000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.17991.17991.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=17991"	VNLAESDLAYTR	V[+28]NLAESDLAYTR	D	A	99.300000	59.900000	53.400000	39.700000	Dimethyl (+28)	1378.710000	2.000000	-0.003800	-2.800000	168.000000	179.000000	0.805867	0.559700	0.368000	0.783800	0.475650	0.614700	NaN	NaN	NaN	1.012777	0.812022	0.639889	0.911793	0.645869	0.918903	NaN	NaN	NaN	0.962285	0.728946	0.033373	0.072243	0.071047	0.204472	0.084182	0.070744	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum54977 scans:27207,	VNPALAELNLR	V[+28]NPALAELNLR	R	S	99.200000	54.800000	49.600000	34.400000	Dimethyl (+28), Label:13C(6) (+6)	1242.740000	2.000000	-0.000450	-0.360000	54.000000	64.000000	0.456567	0.354667	0.778067	0.455600	1.556300	3.436500	NaN	NaN	NaN	0.573792	0.514557	1.352924	0.529999	2.113246	5.137155	NaN	NaN	NaN	0.551896	1.313901	0.025245	0.347948	0.053579	0.984008	0.084152	0.070723	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum54991 scans:27227,	VNPALAELNLR	V[+28]NPALAELNLR	R	S	99.200000	57.200000	49.900000	38.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1246.730000	2.000000	0.000290	0.230000	54.000000	64.000000	0.456567	0.354667	0.778067	0.455600	1.556300	3.436500	NaN	NaN	NaN	0.573792	0.514557	1.352924	0.529999	2.113246	5.137155	NaN	NaN	NaN	0.551896	1.313901	0.025245	0.347948	0.052487	0.957477	0.084121	0.070658	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	RINI_HUMAN	RINI_HUMAN	Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2	100.000000	0.032900	49956.400000	9.000000	21.000000	25.000000	Spectrum54916 scans:27133,	VNPALAELNLR	V[+28]NPALAELNLR	R	S	99.500000	63.100000	49.800000	40.400000	Dimethyl (+28)	1236.720000	2.000000	0.000018	0.015000	54.000000	64.000000	0.456567	0.354667	0.778067	0.455600	1.556300	3.436500	NaN	NaN	NaN	0.573792	0.514557	1.352924	0.529999	2.113246	5.137155	NaN	NaN	NaN	0.551896	1.313901	0.025245	0.347948	0.048238	0.956718	0.083999	0.070636	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	PPIA_HUMAN	PPIA_HUMAN	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	100.000000	0.124000	17994.900000	3.000000	14.000000	43.000000	Nsco_Tails_biological_replicate1_apoptosis.52077.52077.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=52077"	VNPTVFFDIAVDGEPLGR	V[+28]NPTVFFDIAVDGEPLGR	M	V	99.700000	87.500000	56.400000	85.800000	Acetyl (+42)	1987.000000	2.000000	-0.002700	-1.300000	2.000000	19.000000	0.543033	0.267300	0.492133	0.904100	1.273300	1.413050	NaN	NaN	NaN	0.682460	0.387803	0.855735	1.051738	1.728970	2.112340	NaN	NaN	NaN	0.867099	1.058387	0.133566	0.359533	0.252575	0.964871	0.083969	0.070571	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	PPIA_HUMAN	PPIA_HUMAN	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	100.000000	0.124000	17994.900000	3.000000	14.000000	43.000000	Nsco_Tails_biological_replicate1_apoptosis.50061.50061.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=50061"	VNPTVFFDIAVDGEPLGR	V[+28]NPTVFFDIAVDGEPLGR	M	V	99.700000	99.800000	56.600000	97.900000	Acetyl (+42), Label:13C(6)15N(4) (+10)	1997.010000	2.000000	-0.000770	-0.390000	2.000000	19.000000	0.543033	0.267300	0.492133	0.904100	1.273300	1.413050	NaN	NaN	NaN	0.682460	0.387803	0.855735	1.051738	1.728970	2.112340	NaN	NaN	NaN	0.867099	1.058387	0.133566	0.359533	0.252437	0.964125	0.083938	0.070550	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	PPIA_HUMAN	PPIA_HUMAN	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	100.000000	0.124000	17994.900000	3.000000	14.000000	43.000000	Nsco_Tails_biological_replicate1_apoptosis.42382.42382.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=42382"	VNPTVFFDIAVDGEPLGR	V[+28]NPTVFFDIAVDGEPLGR	M	V	99.700000	108.000000	57.400000	94.200000	Dimethyl (+28)	1973.030000	2.000000	-0.000570	-0.290000	2.000000	19.000000	0.543033	0.267300	0.492133	0.904100	1.273300	1.413050	NaN	NaN	NaN	0.682460	0.387803	0.855735	1.051738	1.728970	2.112340	NaN	NaN	NaN	0.867099	1.058387	0.133566	0.359533	0.242657	0.963381	0.083908	0.070443	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	PPIA_HUMAN	PPIA_HUMAN	Peptidyl-prolyl cis-trans isomerase A OS=Homo sapiens GN=PPIA PE=1 SV=2	100.000000	0.011800	17994.900000	3.000000	5.000000	5.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64629.64629.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64629"	VNPTVFFDIAVDGEPLGR	V[+28]NPTVFFDIAVDGEPLGR	M	V	99.700000	153.000000	57.500000	137.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1983.030000	2.000000	-0.000310	-0.160000	2.000000	19.000000	0.543033	0.267300	0.492133	0.904100	1.273300	1.413050	NaN	NaN	NaN	0.682460	0.387803	0.855735	1.051738	1.728970	2.112340	NaN	NaN	NaN	0.867099	1.058387	0.133566	0.359533	0.242530	0.929641	0.083877	0.070271	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.107000	57471.900000	12.000000	23.000000	37.000000	Nsco_Tails_biological_replicate1_apoptosis.44207.44207.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=44207"	VQDDEVGDGTTSVTVLAAELLR	V[+28]QDDEVGDGTTSVTVLAAELLR	R	E	99.700000	126.000000	58.500000	119.000000	Dimethyl (+28)	2315.190000	2.000000	-0.000520	-0.230000	90.000000	111.000000	0.442167	0.412967	1.122767	0.490000	0.318050	1.032950	NaN	NaN	NaN	0.555695	0.599139	1.952298	0.570016	0.431869	1.544136	NaN	NaN	NaN	0.562856	0.515504	0.008098	0.102393	0.014651	0.264559	0.083064	0.070250	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.026000	57471.900000	7.000000	11.000000	11.000000	NSco_TAILS_20150124_Protein_complex_100Kda.64712.64712.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=64712"	VQDDEVGDGTTSVTVLAAELLR	V[+28]QDDEVGDGTTSVTVLAAELLR	R	E	99.700000	131.000000	58.800000	128.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2325.200000	2.000000	0.005100	2.200000	90.000000	111.000000	0.442167	0.412967	1.122767	0.490000	0.318050	1.032950	NaN	NaN	NaN	0.555695	0.599139	1.952298	0.570016	0.431869	1.544136	NaN	NaN	NaN	0.562856	0.515504	0.008098	0.102393	0.013549	0.244699	0.081801	0.070059	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	sp|P78371|TCPB_HUMAN	TCPB_HUMAN	T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4	100.000000	0.038200	57471.900000	5.000000	15.000000	29.000000	Spectrum71844 scans:47765,	VQDDEVGDGTTSVTVLAAELLR	V[+28]QDDEVGDGTTSVTVLAAELLR	R	E	99.700000	162.000000	54.400000	153.000000	Dimethyl (+28), Label:13C(6) (+6)	2321.210000	2.000000	0.000290	0.120000	90.000000	111.000000	0.442167	0.412967	1.122767	0.490000	0.318050	1.032950	NaN	NaN	NaN	0.555695	0.599139	1.952298	0.570016	0.431869	1.544136	NaN	NaN	NaN	0.562856	0.515504	0.008098	0.102393	0.013040	0.233291	0.081772	0.070037	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	RS28_HUMAN	RS28_HUMAN	40S ribosomal protein S28 OS=Homo sapiens GN=RPS28 PE=1 SV=1	100.000000	0.031600	7822.900000	4.000000	14.000000	24.000000	Spectrum17409 scans:8235,	VQPIKLAR	NaN	R	V	98.500000	24.100000	42.000000	7.710000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	989.700000	3.000000	-0.000850	-0.860000	6.000000	13.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ribonuclease H2 subunit B OS=Homo sapiens GN=RNASEH2B PE=1 SV=1	sp|Q5TBB1-2|RNH2B_HUMAN	RNH2B_HUMAN	Isoform 2 of Ribonuclease H2 subunit B OS=Homo sapiens GN=RNASEH2B	100.000000	0.011900	0.000000	2.000000	3.000000	9.000000	Spectrum53026 scans:25029,	VQSTAFFSGDQASTDKEEDYIR	V[+28]QSTAFFSGDQASTDKEEDYIR	R	Y	99.700000	88.200000	50.200000	80.800000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2567.210000	3.000000	-0.007200	-2.800000	0.000000	0.000000	27.627067	NaN	15.735733	NaN	NaN	NaN	NaN	NaN	NaN	34.720456	NaN	27.361734	NaN	NaN	NaN	NaN	NaN	NaN	34.720456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum56552 scans:29066,	VSEELIQDITQR	V[+28]SEELIQDITQR	D	L	98.500000	52.300000	51.000000	41.800000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1467.780000	2.000000	0.000310	0.210000	89.000000	100.000000	0.607133	0.337600	0.556800	0.721700	0.530800	0.735450	NaN	NaN	NaN	0.763018	0.489796	0.968179	0.839552	0.720755	1.099410	NaN	NaN	NaN	0.801285	0.605275	0.030380	0.120017	0.048093	0.269205	0.081685	0.069974	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	MOES_HUMAN	MOES_HUMAN	Moesin OS=Homo sapiens GN=MSN PE=1 SV=3	100.000000	0.094800	67803.800000	19.000000	49.000000	72.000000	Spectrum56570 scans:29088,	VSEELIQDITQR	V[+28]SEELIQDITQR	D	L	98.800000	33.400000	51.200000	12.400000	Dimethyl (+28), Label:13C(6) (+6)	1463.790000	3.000000	-0.000310	-0.210000	89.000000	100.000000	0.607133	0.337600	0.556800	0.721700	0.530800	0.735450	NaN	NaN	NaN	0.763018	0.489796	0.968179	0.839552	0.720755	1.099410	NaN	NaN	NaN	0.801285	0.605275	0.030380	0.120017	0.047422	0.269031	0.081657	0.069953	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3	PPM1F_HUMAN	PPM1F_HUMAN	Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3	100.000000	0.006590	49812.300000	2.000000	5.000000	5.000000	Spectrum33649 scans:2748,	VSGEADAASR	V[+28]SGEADAASR	Y	A	98.500000	46.300000	46.600000	31.400000	Dimethyl (+28), Label:13C(6) (+6)	995.500000	2.000000	-0.000370	-0.370000	337.000000	346.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	MCM6_HUMAN	MCM6_HUMAN	DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1	100.000000	0.017300	92872.600000	3.000000	6.000000	6.000000	Nsco_Tails_biological_replicate1_apoptosis.15427.15427.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=15427"	VSGVDGYETEGIR	V[+28]SGVDGYETEGIR	R	G	99.300000	54.000000	51.300000	40.300000	Dimethyl (+28)	1408.680000	2.000000	-0.003600	-2.600000	270.000000	282.000000	0.595933	0.418567	0.732400	NaN	1.270650	NaN	NaN	NaN	NaN	0.748942	0.607264	1.273518	NaN	1.725372	NaN	NaN	NaN	NaN	0.748942	1.166318	NaN	0.284555	NaN	0.632546	1.000000	0.069763	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	SODC_HUMAN	SODC_HUMAN	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	100.000000	0.049000	15917.300000	7.000000	17.000000	17.000000	Nsco_Tails_biological_replicate1_apoptosis.33302.33302.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33302"	VSIEDSVISLSGDHCIIGR	V[+28]SIEDSVISLSGDHC[+57]IIGR	D	T	99.700000	105.000000	57.200000	99.200000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	2094.070000	2.000000	-0.000260	-0.120000	98.000000	116.000000	0.635733	0.347833	0.547367	1.206600	0.353150	0.292150	NaN	NaN	NaN	0.798961	0.504643	0.951777	1.403635	0.479530	0.436729	NaN	NaN	NaN	1.101298	0.492086	0.170568	0.016241	0.265175	0.034895	0.080520	0.069532	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	SODC_HUMAN	SODC_HUMAN	Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2	100.000000	0.049000	15917.300000	7.000000	17.000000	17.000000	Nsco_Tails_biological_replicate1_apoptosis.33292.33292.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=33292"	VSIEDSVISLSGDHCIIGR	V[+28]SIEDSVISLSGDHC[+57]IIGR	D	T	99.700000	111.000000	57.100000	107.000000	Dimethyl (+28), Carbamidomethyl (+57)	2084.060000	2.000000	0.001100	0.530000	98.000000	116.000000	0.635733	0.347833	0.547367	1.206600	0.353150	0.292150	NaN	NaN	NaN	0.798961	0.504643	0.951777	1.403635	0.479530	0.436729	NaN	NaN	NaN	1.101298	0.492086	0.170568	0.016241	0.265056	0.033766	0.080492	0.069511	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Acetyl-CoA acetyltransferase, mitochondrial OS=Homo sapiens GN=ACAT1 PE=1 SV=1	THIL_HUMAN	THIL_HUMAN	Acetyl-CoA acetyltransferase, mitochondrial OS=Homo sapiens GN=ACAT1 PE=1 SV=1	100.000000	0.007900	45181.800000	2.000000	4.000000	6.000000	Spectrum48505 scans:19836,	VSKPTLKEVVIVSATR	V[+28]SKPTLKEVVIVSATR	Y	T	99.700000	30.200000	48.400000	23.400000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1836.170000	4.000000	-0.000320	-0.170000	34.000000	49.000000	4.505400	3.669200	0.496767	119.199450	76.558400	0.663500	NaN	NaN	NaN	5.662184	5.323339	0.863792	138.664476	103.956005	0.991853	NaN	NaN	NaN	72.163330	54.639672	0.172007	0.188579	0.264568	0.363741	0.079963	0.069490	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Acetyl-CoA acetyltransferase, mitochondrial OS=Homo sapiens GN=ACAT1 PE=1 SV=1	THIL_HUMAN	THIL_HUMAN	Acetyl-CoA acetyltransferase, mitochondrial OS=Homo sapiens GN=ACAT1 PE=1 SV=1	100.000000	0.007900	45181.800000	2.000000	4.000000	6.000000	Spectrum30057 scans:15513,	VSKPTLKEVVIVSATR	V[+28]SKPTLKEVVIVSATR	Y	T	99.700000	40.200000	45.800000	29.900000	Dimethyl (+28), Dimethyl:2H(4) (+32), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1824.200000	4.000000	-0.001400	-0.790000	34.000000	49.000000	4.505400	3.669200	0.496767	119.199450	76.558400	0.663500	NaN	NaN	NaN	5.662184	5.323339	0.863792	138.664476	103.956005	0.991853	NaN	NaN	NaN	72.163330	54.639672	0.172007	0.188579	0.264451	0.363539	0.079935	0.069469	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Succinate-semialdehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH5A1 PE=1 SV=2	sp|P51649-2|SSDH_HUMAN	SSDH_HUMAN	Isoform 2 of Succinate-semialdehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH5A1	99.700000	0.001320	0.000000	1.000000	1.000000	1.000000	Spectrum69621 scans:44576,	VSMELGGLAPF	V[+28]SMELGGLAPF	R	I	98.700000	49.700000	48.700000	26.300000	Dimethyl (+28)	1147.590000	2.000000	-0.000042	-0.036000	0.000000	0.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.054000	37523.700000	7.000000	15.000000	41.000000	Spectrum35389 scans:4712,	VSTEVDAR	V[+28]STEVDAR	R	L	99.000000	66.500000	47.700000	41.100000	Dimethyl (+28), Label:13C(6) (+6)	909.490000	2.000000	-0.000310	-0.340000	103.000000	110.000000	0.356333	0.240867	0.683567	5.472950	1.036700	1.218800	NaN	NaN	NaN	0.447824	0.349454	1.188605	6.366672	1.407699	1.821960	NaN	NaN	NaN	3.407248	0.878576	0.455295	0.345094	0.688098	0.626623	0.079853	0.069386	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.054000	37523.700000	7.000000	15.000000	41.000000	Spectrum35512 scans:4854,	VSTEVDAR	V[+28]STEVDAR	R	L	99.000000	66.200000	46.900000	40.900000	Dimethyl (+28)	903.470000	2.000000	0.000120	0.130000	103.000000	110.000000	0.356333	0.240867	0.683567	5.472950	1.036700	1.218800	NaN	NaN	NaN	0.447824	0.349454	1.188605	6.366672	1.407699	1.821960	NaN	NaN	NaN	3.407248	0.878576	0.455295	0.345094	0.595280	0.572134	0.079170	0.069261	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	TALDO_HUMAN	TALDO_HUMAN	Transaldolase OS=Homo sapiens GN=TALDO1 PE=1 SV=2	100.000000	0.054000	37523.700000	7.000000	15.000000	41.000000	Spectrum35405 scans:4730,	VSTEVDAR	V[+28]STEVDAR	R	L	99.000000	67.800000	46.900000	42.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	913.470000	2.000000	-0.000650	-0.710000	103.000000	110.000000	0.356333	0.240867	0.683567	5.472950	1.036700	1.218800	NaN	NaN	NaN	0.447824	0.349454	1.188605	6.366672	1.407699	1.821960	NaN	NaN	NaN	3.407248	0.878576	0.455295	0.345094	0.577228	0.538676	0.079142	0.069241	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3	SEC13_HUMAN	SEC13_HUMAN	Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3	97.100000	0.004480	35521.600000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis.30385.30385.3 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30385"	VSVINTVDTSHEDMIHDAQMDYYGTR	V[+42]SVINTVDTSHEDMIHDAQMDYYGTR	M	L	99.300000	72.600000	49.500000	72.600000	Acetyl (+42)	3038.330000	3.000000	-0.004200	-1.400000	2.000000	27.000000	NaN	0.228967	NaN	0.777150	0.298550	0.384200	NaN	NaN	NaN	NaN	0.332189	NaN	0.904057	0.405391	0.574333	NaN	NaN	NaN	0.904057	0.368790	NaN	0.062976	NaN	0.098258	1.000000	0.069158	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	99.900000	0.004720	144715.800000	1.000000	2.000000	2.000000	NSco_TAILS_20150124_Protein_complex_100Kda.52548.52548.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=52548"	VSVNGAVVLEEPVGELR	V[+28]SVNGAVVLEEPVGELR	R	A	99.700000	71.300000	57.500000	55.300000	Dimethyl (+28)	1793.990000	2.000000	-0.003300	-1.900000	992.000000	1008.000000	0.756300	0.234367	0.399400	0.512550	1.528000	NaN	NaN	NaN	NaN	0.950484	0.340023	0.694488	0.596248	2.074818	NaN	NaN	NaN	NaN	0.773366	1.207421	0.143328	0.396589	0.176365	0.616838	0.077811	0.069117	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum58152 scans:31006,	VSVNGAVVLEEPVGELR	V[+28]SVNGAVVLEEPVGELR	R	A	99.700000	95.800000	52.900000	80.400000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1804.000000	2.000000	0.002900	1.600000	992.000000	1008.000000	0.756300	0.234367	0.399400	0.512550	1.528000	NaN	NaN	NaN	NaN	0.950484	0.340023	0.694488	0.596248	2.074818	NaN	NaN	NaN	NaN	0.773366	1.207421	0.143328	0.396589	0.176302	0.616561	0.076474	0.069034	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	PUR4_HUMAN	PUR4_HUMAN	Phosphoribosylformylglycinamidine synthase OS=Homo sapiens GN=PFAS PE=1 SV=4	100.000000	0.027700	144715.800000	10.000000	21.000000	21.000000	Spectrum58160 scans:31016,	VSVNGAVVLEEPVGELR	V[+28]SVNGAVVLEEPVGELR	R	A	99.700000	88.700000	53.000000	68.000000	Dimethyl (+28), Label:13C(6) (+6)	1800.000000	2.000000	-0.003900	-2.200000	992.000000	1008.000000	0.756300	0.234367	0.399400	0.512550	1.528000	NaN	NaN	NaN	NaN	0.950484	0.340023	0.694488	0.596248	2.074818	NaN	NaN	NaN	NaN	0.773366	1.207421	0.143328	0.396589	0.174020	0.616285	0.076247	0.068972	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform Beta of Nuclear inhibitor of protein phosphatase 1 OS=Homo sapiens GN=PPP1R8	sp|Q12972-2|PP1R8_HUMAN	PP1R8_HUMAN	Isoform Beta of Nuclear inhibitor of protein phosphatase 1 OS=Homo sapiens GN=PPP1R8	99.600000	0.001320	22693.000000	1.000000	1.000000	1.000000	Spectrum60251 scans:33579,	VTFSEDDEIINPEDVDPSVGR	V[+28]TFSEDDEIINPEDVDPSVGR	R	F	99.500000	43.200000	49.400000	38.600000	Dimethyl (+28)	2360.110000	3.000000	0.004700	2.000000	59.000000	79.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369|FLNB_HUMAN	FLNB_HUMAN	Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2	100.000000	0.005010	278140.800000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.12771.12771.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12771"	VTILSPSR	NaN	D	K	99.000000	51.700000	51.500000	21.500000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	909.550000	2.000000	-0.000039	-0.043000	979.000000	986.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Eukaryotic translation initiation factor 3 subunit G OS=Homo sapiens GN=EIF3G PE=1 SV=2	tr|K7ENA8|K7ENA8_HUMAN	K7ENA8_HUMAN	Eukaryotic translation initiation factor 3 subunit G (Fragment) OS=Homo sapiens GN=EIF3G PE=1 SV=1	100.000000	0.003950	0.000000	2.000000	3.000000	3.000000	Spectrum36903 scans:6425,	VTNLSEDTR	V[+28]TNLSEDTR	R	E	98.700000	49.900000	47.100000	28.000000	Dimethyl (+28)	1061.540000	2.000000	0.000120	0.110000	0.000000	0.000000	0.625000	0.479967	0.771267	1.047350	1.093000	0.716400	NaN	NaN	NaN	0.785472	0.696344	1.341100	1.218380	1.484147	1.070932	NaN	NaN	NaN	1.001926	1.090245	0.135452	0.220718	0.163428	0.279828	0.075847	0.068788	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	EZRI_HUMAN	EZRI_HUMAN	Ezrin OS=Homo sapiens GN=EZR PE=1 SV=4	100.000000	0.021100	69396.600000	5.000000	15.000000	16.000000	Spectrum59771 scans:32979,	VTTMDAELEFAIQPN	V[+28]TTM[+16]DAELEFAIQPN	R	T	99.600000	62.900000	48.200000	51.200000	Dimethyl (+28), Oxidation (+16)	1721.820000	2.000000	-0.001600	-0.950000	9.000000	23.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46 PE=1 SV=2	DDX46_HUMAN	DDX46_HUMAN	Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46 PE=1 SV=2	100.000000	0.001320	117348.100000	1.000000	1.000000	1.000000	Spectrum20551 scans:16638,	VTYVVLDEADR	V[+28]TYVVLDEADR	R	M	99.700000	75.900000	49.400000	64.500000	Dimethyl (+28)	1306.670000	2.000000	-0.002400	-1.900000	523.000000	533.000000	1.801000	0.898967	0.567167	1.181300	0.931250	0.965800	NaN	NaN	NaN	2.263416	1.304236	0.986205	1.374204	1.264512	1.443755	NaN	NaN	NaN	1.818810	1.284374	0.152628	0.009844	0.180819	0.012113	0.075476	0.068604	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=2 SV=1	sp|P61978|HNRPK_HUMAN	HNRPK_HUMAN	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=1 SV=1	100.000000	0.017100	50960.500000	4.000000	8.000000	13.000000	Spectrum40094 scans:10152,	VVLIGGKPDR	NaN	R	V	98.600000	28.100000	47.100000	4.320000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1126.720000	3.000000	0.000260	0.230000	192.000000	201.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369|FLNB_HUMAN	FLNB_HUMAN	Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2	100.000000	0.018400	278140.800000	8.000000	12.000000	14.000000	Spectrum17138 scans:7688,	VVQVGEACNPNACR	V[+28]VQVGEAC[+57]NPNAC[+57]R	F	A	99.300000	32.900000	47.000000	32.800000	Dimethyl (+28), Carbamidomethyl (+57), Carbamidomethyl (+57), Label:13C(6)15N(4) (+10)	1610.750000	3.000000	0.000950	0.590000	443.000000	456.000000	NaN	0.525667	NaN	NaN	2.436000	NaN	NaN	NaN	NaN	NaN	0.762646	NaN	NaN	3.307760	NaN	NaN	NaN	NaN	NaN	2.035203	NaN	0.355740	NaN	0.431917	NaN	0.068564	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Platelet-activating factor acetylhydrolase IB subunit gamma OS=Homo sapiens GN=PAFAH1B3 PE=1 SV=1	PA1B3_HUMAN	PA1B3_HUMAN	Platelet-activating factor acetylhydrolase IB subunit gamma OS=Homo sapiens GN=PAFAH1B3 PE=1 SV=1	100.000000	0.010500	25715.600000	4.000000	7.000000	8.000000	Spectrum59655 scans:32832,	VVVLGLLPR	NaN	R	G	98.800000	43.000000	41.300000	14.600000	Dimethyl (+28), Label:13C(6) (+6)	998.690000	2.000000	-0.000230	-0.230000	133.000000	141.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	RS8_HUMAN	RS8_HUMAN	40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2	100.000000	0.008960	24188.400000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.12956.12956.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=12956"	VVYNASNNELVR	V[+28]VYNASNNELVR	D	T	99.700000	66.000000	54.300000	60.800000	Dimethyl (+28)	1404.740000	2.000000	-0.000920	-0.650000	81.000000	92.000000	0.462367	0.156867	0.346700	1.536550	1.495450	0.823650	3.087300	NaN	NaN	0.581082	0.227585	0.602852	1.787465	2.030620	1.231258	2.064876	NaN	NaN	1.477808	1.129102	0.083291	0.428946	0.097543	0.518983	0.005075	0.068442	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.009440	50123.200000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.39034.39034.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=39034"	VYKIGGIGTVPVGR	V[+28]YKIGGIGTVPVGR	D	V	98.900000	60.800000	54.500000	47.300000	Dimethyl (+28), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	1488.910000	3.000000	0.000045	0.030000	253.000000	266.000000	22.336500	8.656833	0.371467	10.821200	4.231750	0.391150	NaN	NaN	NaN	28.071509	12.559484	0.645917	12.588280	5.746147	0.584722	NaN	NaN	NaN	20.329895	9.152815	0.000000	0.167974	0.000000	0.201546	0.074312	0.068159	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	EF1A1_HUMAN	EF1A1_HUMAN	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1	100.000000	0.009440	50123.200000	3.000000	4.000000	4.000000	NSco_TAILS_20150124_Protein_complex_100Kda.38791.38791.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=38791"	VYKIGGIGTVPVGR	V[+28]YKIGGIGTVPVGR	D	V	99.400000	66.800000	54.800000	50.600000	Dimethyl (+28), Dimethyl (+28)	1470.890000	3.000000	-0.000380	-0.260000	253.000000	266.000000	22.336500	8.656833	0.371467	10.821200	4.231750	0.391150	NaN	NaN	NaN	28.071509	12.559484	0.645917	12.588280	5.746147	0.584722	NaN	NaN	NaN	20.329895	9.152815	0.000000	0.167974	0.000000	0.199000	0.074288	0.068139	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	Phosphoglycerate kinase 1 OS=Homo sapiens GN=PGK1 PE=1 SV=3	PGK1_HUMAN	PGK1_HUMAN	Phosphoglycerate kinase 1 OS=Homo sapiens GN=PGK1 PE=1 SV=3	100.000000	0.014400	44597.300000	2.000000	4.000000	5.000000	Nsco_Tails_biological_replicate1_apoptosis.14374.14374.3 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=14374"	VYVNDAFGTAHR	V[+28]YVNDAFGTAHR	D	A	99.700000	107.000000	52.400000	91.100000	Dimethyl (+28)	1376.680000	3.000000	0.000620	0.450000	160.000000	171.000000	0.626100	0.320700	0.512933	NaN	8.456400	NaN	2.505086	0.919400	NaN	0.786854	0.465277	0.891903	NaN	11.482653	NaN	1.675475	0.391564	NaN	1.231164	4.113165	0.220487	0.374336	0.254182	0.443326	0.072953	0.004645	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda (NSco_TAILS_20150124_Protein_complex_100Kda_127004)	Phosphoglycerate kinase 1 OS=Homo sapiens GN=PGK1 PE=1 SV=3	PGK1_HUMAN	PGK1_HUMAN	Phosphoglycerate kinase 1 OS=Homo sapiens GN=PGK1 PE=1 SV=3	100.000000	0.011800	44597.300000	4.000000	4.000000	5.000000	NSco_TAILS_20150124_Protein_complex_100Kda.30665.30665.3 File:"NSco_TAILS_20150124_Protein_complex_100Kda.raw", NativeID:"controllerType=0 controllerNumber=1 scan=30665"	VYVNDAFGTAHR	V[+28]YVNDAFGTAHR	D	A	99.700000	71.000000	52.600000	54.000000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1386.690000	3.000000	-0.000940	-0.680000	160.000000	171.000000	0.626100	0.320700	0.512933	NaN	8.456400	NaN	2.505086	0.919400	NaN	0.786854	0.465277	0.891903	NaN	11.482653	NaN	1.675475	0.391564	NaN	1.231164	4.113165	0.220487	0.374336	0.254098	0.443175	0.072655	0.004643	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis_repeat (Nsco_Tails_biological_replicate2_apoptosis_repeat_127092)	Drebrin-like protein OS=Homo sapiens GN=DBNL PE=2 SV=1	B4DDP6_HUMAN	B4DDP6_HUMAN	Drebrin-like protein OS=Homo sapiens GN=DBNL PE=2 SV=1	97.100000	0.002500	43021.900000	1.000000	1.000000	1.000000	Nsco_Tails_biological_replicate2_apoptosis_repeat.34405.34405.2 File:"Nsco_Tails_biological_replicate2_apoptosis_repeat.raw", NativeID:"controllerType=0 controllerNumber=1 scan=34405"	WALFTYEGNSNDIR	W[+28]ALFTYEGNSNDIR	D	V	98.500000	49.100000	52.600000	47.600000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1722.830000	2.000000	0.001300	0.760000	28.000000	41.000000	1.717900	0.951100	1.191467	0.685200	0.350450	0.502600	NaN	NaN	NaN	2.158980	1.379872	2.071756	0.797092	0.475864	0.751327	NaN	NaN	NaN	1.478036	0.927868	0.274844	0.288585	0.316636	0.341539	0.072632	0.068079	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	THOP1_HUMAN	THOP1_HUMAN	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	100.000000	0.011900	78822.600000	5.000000	8.000000	9.000000	Spectrum53544 scans:25599,	WDLSAQQIEER	W[+28]DLSAQQIEER	R	T	99.500000	61.500000	48.600000	55.300000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1411.700000	2.000000	0.000009	0.006500	26.000000	36.000000	2.695800	2.159433	1.285967	6.902700	4.777100	1.471050	NaN	NaN	NaN	3.387960	3.132943	2.236075	8.029897	6.486659	2.199043	NaN	NaN	NaN	5.708929	4.809801	0.245825	0.213559	0.281151	0.252229	0.072609	0.068059	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	THOP1_HUMAN	THOP1_HUMAN	Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2	100.000000	0.011900	78822.600000	5.000000	8.000000	9.000000	Spectrum53536 scans:25590,	WDLSAQQIEER	W[+28]DLSAQQIEER	R	T	99.700000	84.600000	48.400000	70.300000	Dimethyl (+28)	1401.690000	2.000000	-0.002000	-1.400000	26.000000	36.000000	2.695800	2.159433	1.285967	6.902700	4.777100	1.471050	NaN	NaN	NaN	3.387960	3.132943	2.236075	8.029897	6.486659	2.199043	NaN	NaN	NaN	5.708929	4.809801	0.245825	0.213559	0.281058	0.252143	0.072382	0.067999	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	EF1G_HUMAN	EF1G_HUMAN	Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3	100.000000	0.040300	50101.400000	3.000000	4.000000	9.000000	Nsco_Tails_biological_replicate2_apoptosis.27518.27518.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27518"	WQVDYESYTWR	W[+28]QVDYESYTWR	D	K	99.700000	57.600000	48.300000	53.000000	Dimethyl (+28)	1559.700000	2.000000	-0.001800	-1.200000	390.000000	400.000000	22.773967	18.767667	0.690533	0.910750	0.795850	0.871000	NaN	NaN	NaN	28.621298	27.228455	1.200719	1.059474	1.080657	1.302041	NaN	NaN	NaN	14.840386	14.154556	0.432802	0.431469	0.486027	0.505298	0.072360	0.067979	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate2_apoptosis (Nsco_Tails_biological_replicate2_apoptosis_127091)	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2	SYMC_HUMAN	SYMC_HUMAN	Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1 SV=2	100.000000	0.008960	101099.500000	2.000000	2.000000	2.000000	Nsco_Tails_biological_replicate2_apoptosis.21182.21182.2 File:"Nsco_Tails_biological_replicate2_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=21182"	WTPNAQFITR	W[+28]TPNAQFITR	D	S	99.600000	59.500000	53.200000	46.400000	Dimethyl (+28)	1260.660000	2.000000	-0.002000	-1.600000	474.000000	483.000000	3.569967	3.094500	1.572500	0.507200	0.261900	0.537200	NaN	NaN	NaN	4.486574	4.489554	2.734307	0.590025	0.355625	0.803050	NaN	NaN	NaN	2.538299	2.422590	0.416756	0.449677	0.467857	0.526444	0.072201	0.067602	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2	PSA_HUMAN	PSA_HUMAN	Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2	100.000000	0.007900	103261.100000	3.000000	5.000000	6.000000	Spectrum47393 scans:18573,	YAAVTQFEATDAR	Y[+28]AAVTQFEATDAR	R	R	98.900000	54.000000	48.400000	47.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1479.720000	2.000000	-0.002300	-1.500000	173.000000	185.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2	PSA_HUMAN	PSA_HUMAN	Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2	100.000000	0.007900	103261.100000	3.000000	5.000000	6.000000	Spectrum47415 scans:18597,	YAAVTQFEATDAR	Y[+28]AAVTQFEATDAR	R	R	99.200000	55.600000	48.200000	39.900000	Dimethyl (+28)	1469.710000	2.000000	-0.002100	-1.400000	173.000000	185.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.032900	28786.800000	10.000000	21.000000	25.000000	Spectrum56472 scans:28966,	YADLTEDQLPSCESLKDTIAR	Y[+28]ADLTEDQLPSC[+57]ESLKDTIAR	R	A	99.700000	44.300000	53.000000	38.500000	Dimethyl (+28), Carbamidomethyl (+57), Label:13C(6)15N(2)+Dimethyl (+36), Label:13C(6)15N(4) (+10)	2498.230000	4.000000	0.001300	0.510000	142.000000	162.000000	7.390167	4.358133	0.603233	1.583650	NaN	NaN	NaN	NaN	NaN	9.287629	6.322855	1.048919	1.842257	NaN	NaN	NaN	NaN	NaN	5.564943	6.322855	0.375341	NaN	0.413339	NaN	0.071754	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	PGAM1_HUMAN	PGAM1_HUMAN	Phosphoglycerate mutase 1 OS=Homo sapiens GN=PGAM1 PE=1 SV=2	100.000000	0.032900	28786.800000	10.000000	21.000000	25.000000	Spectrum56483 scans:28979,	YADLTEDQLPSCESLKDTIAR	Y[+28]ADLTEDQLPSC[+57]ESLKDTIAR	R	A	99.700000	75.300000	53.800000	59.000000	Dimethyl (+28), Carbamidomethyl (+57), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	2490.250000	3.000000	-0.003800	-1.500000	142.000000	162.000000	7.390167	4.358133	0.603233	1.583650	NaN	NaN	NaN	NaN	NaN	9.287629	6.322855	1.048919	1.842257	NaN	NaN	NaN	NaN	NaN	5.564943	6.322855	0.375341	NaN	0.413208	NaN	0.071731	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Isoform 2 of Filamin-B OS=Homo sapiens GN=FLNB	sp|O75369|FLNB_HUMAN	FLNB_HUMAN	Filamin-B OS=Homo sapiens GN=FLNB PE=1 SV=2	100.000000	0.018400	278140.800000	8.000000	12.000000	14.000000	Spectrum18013 scans:9524,	YAPTEVGLHEMH	Y[+28]APTEVGLHEM[+16]H	R	I	99.500000	31.900000	45.300000	27.800000	Dimethyl (+28), Oxidation (+16)	1426.650000	3.000000	-0.000220	-0.160000	1788.000000	1799.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	HNRPF_HUMAN	HNRPF_HUMAN	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3	100.000000	0.025000	45653.800000	3.000000	8.000000	19.000000	Spectrum45974 scans:16912,	YGDSEFTVQSTTGH	Y[+28]GDSEFTVQSTTGH	R	C	99.700000	81.600000	42.300000	68.500000	Dimethyl (+28)	1555.680000	2.000000	-0.002300	-1.500000	276.000000	289.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.086400	60327.200000	3.000000	8.000000	30.000000	Nsco_Tails_biological_replicate1_apoptosis.27506.27506.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27506"	YINENLIVNTDELGR	Y[+28]INENLIVNTDELGR	R	D	99.200000	64.300000	56.200000	50.500000	Dimethyl (+28)	1789.930000	2.000000	0.004300	2.400000	131.000000	145.000000	0.759833	0.257133	0.353000	77.297150	1.607700	1.540950	NaN	NaN	NaN	0.954924	0.373053	0.613806	89.919616	2.183040	2.303535	NaN	NaN	NaN	45.437270	1.278047	0.439391	0.392251	0.474095	0.423494	0.071487	0.067150	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	Nsco_Tails_biological_replicate1_apoptosis (Nsco_Tails_biological_replicate1_apoptosis_126957)	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	TCPA_HUMAN	TCPA_HUMAN	T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1	100.000000	0.086400	60327.200000	3.000000	8.000000	30.000000	Nsco_Tails_biological_replicate1_apoptosis.27550.27550.2 File:"Nsco_Tails_biological_replicate1_apoptosis.raw", NativeID:"controllerType=0 controllerNumber=1 scan=27550"	YINENLIVNTDELGR	Y[+28]INENLIVNTDELGR	R	D	99.700000	82.400000	56.200000	71.900000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	1799.930000	2.000000	-0.001200	-0.650000	131.000000	145.000000	0.759833	0.257133	0.353000	77.297150	1.607700	1.540950	NaN	NaN	NaN	0.954924	0.373053	0.613806	89.919616	2.183040	2.303535	NaN	NaN	NaN	45.437270	1.278047	0.439391	0.392251	0.472040	0.423362	0.071465	0.067111	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	EF2_HUMAN	EF2_HUMAN	Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4	100.000000	0.096200	95322.100000	18.000000	41.000000	73.000000	Spectrum52218 scans:24136,	YLAEKYEWDVAEAR	Y[+28]LAEKYEWDVAEAR	R	K	99.300000	39.900000	52.100000	27.700000	Dimethyl (+28), Dimethyl:2H(4) (+32), Label:13C(6) (+6)	1807.940000	3.000000	-0.002300	-1.300000	634.000000	647.000000	24.223167	13.367500	0.940200	0.333400	7.670150	20.972600	NaN	NaN	NaN	30.442587	19.393800	1.634846	0.387844	10.415032	31.351521	NaN	NaN	NaN	15.415215	14.904416	0.475321	0.000000	0.495008	0.000000	0.070615	0.066898	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	K1C9_HUMAN	K1C9_HUMAN	Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3	100.000000	0.030300	62047.800000	7.000000	12.000000	23.000000	Spectrum21802 scans:6435,	YLSRSGGGGGGGLGSGGSIR	YLSRSGGGGGGGLGSGGSIR	S	S	99.700000	46.400000	50.600000	31.900000		1750.870000	3.000000	-0.000620	-0.350000	10.000000	29.000000	NaN	15.369567	NaN	NaN	0.671950	NaN	NaN	NaN	NaN	NaN	22.298433	NaN	NaN	0.912418	NaN	NaN	NaN	NaN	NaN	11.605425	NaN	0.442074	NaN	0.474922	NaN	0.066879	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_100Kda_rep2 (NSco_TAILS_20150124_Protein_complex_100Kda_rep2_127003)	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=2 SV=1	sp|P61978|HNRPK_HUMAN	HNRPK_HUMAN	Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK PE=1 SV=1	100.000000	0.014000	50960.500000	3.000000	6.000000	6.000000	NSco_TAILS_20150124_Protein_complex_100Kda_rep2.26433.26433.2 File:"NSco_TAILS_20150124_Protein_complex_100Kda_rep2.raw", NativeID:"controllerType=0 controllerNumber=1 scan=26433"	YNASVSVPDSSGPER	Y[+28]NASVSVPDSSGPER	D	I	99.200000	53.000000	50.600000	42.300000	Dimethyl (+28)	1591.740000	2.000000	-0.003800	-2.400000	72.000000	86.000000	0.340767	2.226067	17.441100	NaN	NaN	NaN	NaN	NaN	NaN	0.428260	3.229616	30.327074	NaN	NaN	NaN	NaN	NaN	NaN	0.428260	3.229616	NaN	NaN	NaN	NaN	1.000000	1.000000	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2	H31_HUMAN	H31_HUMAN	Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2	100.000000	0.010500	15386.700000	3.000000	6.000000	8.000000	Spectrum17513 scans:8428,	YRPGTVALR	NaN	R	E	99.300000	33.500000	48.000000	11.700000	Dimethyl (+28), Label:13C(6) (+6), Label:13C(6) (+6)	1071.660000	3.000000	-0.000630	-0.580000	42.000000	50.000000	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	
Apoptosis_scaffold_analysis_20150606	Uncategorized Sample	Apoptosis_study	NSco_TAILS_20150124_Protein_complex_fraction1to5.raw (NSco_TAILS_20150124_Protein_complex_fraction1to5_126432)	U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1	LSM2_HUMAN	LSM2_HUMAN	U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1	99.800000	0.002630	10816.600000	1.000000	2.000000	2.000000	Spectrum61540 scans:35200,	YVQLPADEVDTQLLQDAAR	Y[+28]VQLPADEVDTQLLQDAAR	R	K	99.700000	58.000000	53.200000	41.200000	Dimethyl (+28), Label:13C(6)15N(4) (+10)	2182.110000	3.000000	-0.006200	-2.800000	69.000000	87.000000	0.364067	0.236467	0.617267	1.148250	1.467450	4.198150	NaN	NaN	NaN	0.457543	0.343070	1.073321	1.335757	1.992600	6.275731	NaN	NaN	NaN	0.896650	1.167835	0.289910	0.391456	0.291591	0.391908	0.067092	0.066686	
