Mouse aging data

Supplement to Altered hippocampal transcript profile accompanies an age-related spatial memory deficit in mice.
Verbitsky M, Yonan AL, Malleret G, Kandel ER, Gilliam TC, Pavlidis P pubmed reprint

Abstract

We have carried out a global survey of age-related changes in mRNA levels in the C57BL/6NIA mouse hippocampus and found a difference in the hippocampal gene expression profile between 2-month-old young mice and 15-month-old middle-aged mice correlated with an age-related cognitive deficit in hippocampal-based explicit memory formation. Middle-aged mice displayed a mild but specific deficit in spatial memory in the Morris water maze. By using Affymetrix GeneChip microarrays, we found a distinct pattern of age-related change, consisting mostly of gene overexpression in the middle-aged mice, suggesting that the induction of negative regulators in the middle-aged hippocampus could be involved in impairment of learning. Interestingly, we report changes in transcript levels for genes that could affect synaptic plasticity. Those changes could be involved in the memory deficits we observed in the 15-month-old mice. In agreement with previous reports, we also found altered expression in genes related to inflammation, protein processing, and oxidative stress.

Contact

paul@chibi.ubc.ca

Supplement

The link below is to a very large tarred-gzipped file containing the raw data files (DAT, CEL etc.).

 

Download the data (and be prepared to wait – it’s over 1 GB).

Samples starting with “20” are the “young” mice, “19” are old.

 

Also available is the summary table (RMA) that was used for the analysis in the paper.