public class ExperimentScoreQuickPvalGenerator extends GeneSetResamplingPvalGenerator
GeneSetResamplingPvalGenerator
but is stripped-down for using during resampling.generator, hist
ALERT_UPDATE_FREQUENCY, geneAnnots, geneToScoreMap, messenger, numGenesUsed, settings
Constructor and Description |
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ExperimentScoreQuickPvalGenerator(SettingsHolder settings,
GeneAnnotations a,
Map<Gene,Double> geneToScoreMap,
StatusViewer messenger) |
Modifier and Type | Method and Description |
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double |
classPvalue(GeneSetTerm geneSetName)
This is stripped-down version of classPvalue.
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classPval, classPvalGeneratorRaw, generateGeneSetResults, generateGeneSetResults, scoreToPval
checkAspect, checkAspectAndRedundancy, getMaxClassSize, getMessenger, getMinGeneSetSize, getNumGenesUsed, multipleTestCorrect, numGenesInSet, numProbesInSet, ranksOfGenesInSet, set_class_max_size, set_class_min_size
ifInterruptedStop
public ExperimentScoreQuickPvalGenerator(SettingsHolder settings, GeneAnnotations a, Map<Gene,Double> geneToScoreMap, StatusViewer messenger)
public double classPvalue(GeneSetTerm geneSetName)
class_name
- Stringgroup_pval_map
- MapprobesToPvals
- MapIllegalStateException
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