Package ubic.gemma.core.analysis.expression.diff
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Class Summary Class Description AncovaTest Tests of ANCOVA: using linear models with mixtures of fixed level and continuous parameters.BaseAnalyzerConfigurationTest Other tests can extend this class if they want an expression experiment with complete block design and biological replicates.BaselineDetectionTest BaselineSelectionTest ContinuousVariableDiffExTest DifferentialExpressionAnalysisHelperServiceTest DifferentialExpressionAnalyzerServiceTest DifferentialExpressionAnalyzerTest DiffExMetaAnalyzerServiceTest This is a test that requires complex setup: loading several data sets, information on genes, array design annotations, conducting differential expression, and finally the meta-analysis.DiffExTest Tests added to check various cases of differential expression analysis.DiffExWithInvalidInteraction2Test for bug 3927DiffExWithInvalidInteractionTest LowVarianceDataTest Test based on GSE19480, see bug 3177OneWayAnovaAnalyzerTest Tests the one way anova analyzer.SubsettedAnalysis2Test SubsettedAnalysis3Test SubsettedAnalysisTest TTestAnalyzerTest See test/data/stat-tests/README.txt for R code.TwoWayAnovaWithInteractionsAnalyzerTest Tests the two way anova analyzer with interactions.TwoWayAnovaWithInteractionsTest2 TwoWayAnovaWithInteractionTest2 Test based on GSE8441TwoWayAnovaWithoutInteractionsAnalyzerTest Tests the two way anova analyzer.